AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689440 MtrunA17_Chr1g0147101 96.970 297 7 2 1 297 1 295 0.0 582
Msa0689440 MtrunA17_Chr1g0147091 84.848 297 38 2 1 297 1 290 1.02e-159 446
Msa0689440 MtrunA17_Chr1g0147081 80.602 299 45 3 1 296 1 289 1.86e-153 430
Msa0689440 MtrunA17_Chr6g0477351 73.438 128 23 2 10 137 28 144 1.74e-37 130
Msa0689440 MtrunA17_Chr3g0104601 24.684 158 83 2 140 297 21 142 2.37e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689440 AT5G53400.1 59.582 287 100 2 26 297 19 304 5.02e-116 336
Msa0689440 AT4G27890.1 56.066 305 114 6 1 297 1 293 9.33e-109 317
Msa0689440 AT5G58740.1 25.949 158 81 3 140 297 21 142 9.32e-14 68.2

Find 101 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATGATTTCCTGTTTC+TGG 0.058297 4_4:+56499241 None:intergenic
ACAGTTTGGGGTGTCTAAAT+TGG 0.188690 4_4:-56498921 Msa0689440:three_prime_UTR
TTATATATTTGAACATATTT+TGG 0.220188 4_4:-56498860 Msa0689440:three_prime_UTR
TAAAAGCTTACATCAATAAT+TGG 0.250303 4_4:+56500171 None:intergenic
AACTCTGGTTTATATATTCC+TGG 0.285035 4_4:-56498781 Msa0689440:three_prime_UTR
CAACCATTCATGTTTATGTT+TGG 0.295885 4_4:-56498960 Msa0689440:three_prime_UTR
CTCTCTTGAACTTTCTCTAA+TGG 0.315405 4_4:-56501833 Msa0689440:exon
AAGAGGTTTGGGTTTCTTCT+TGG 0.317575 4_4:+56501794 None:intergenic
TGATCAGAGGCAGAAGTCTA+TGG 0.321181 4_4:-56499286 Msa0689440:CDS
AGAAAGCTGCGCTATGATTC+GGG 0.325747 4_4:-56499064 Msa0689440:three_prime_UTR
TACACTCCCAAACAACAGTT+TGG 0.329221 4_4:-56498935 Msa0689440:three_prime_UTR
AGAAGAAGATGAAGAGGTTT+GGG 0.330750 4_4:+56501783 None:intergenic
GAGAAGAAGATGAAGAGGTT+TGG 0.337011 4_4:+56501782 None:intergenic
AGACACCCCAAACTGTTGTT+TGG 0.354071 4_4:+56498928 None:intergenic
TTCTGGAGCTCCTCACTTGT+TGG 0.356328 4_4:+56499258 None:intergenic
TTGGGTTTCTTCTTGGTAAT+CGG 0.361888 4_4:+56501801 None:intergenic
TCAAGCCTGATGAATGTTAC+TGG 0.367377 4_4:-56499962 Msa0689440:CDS
ATCCATACCATTACCCTGAT+TGG 0.375160 4_4:+56500329 None:intergenic
AGCAGCAATCTTAGCTTTCT+CGG 0.384597 4_4:+56501570 None:intergenic
CGAATCATTGTCGAAGAAAT+CGG 0.389616 4_4:+56501657 None:intergenic
GACACCCCAAACTGTTGTTT+GGG 0.392691 4_4:+56498929 None:intergenic
AAACATAAACATGAATGGTT+GGG 0.395039 4_4:+56498962 None:intergenic
TTGATGGACAGTTCCCAATC+AGG 0.395904 4_4:-56500343 Msa0689440:intron
TAGAAAGCTGCGCTATGATT+CGG 0.396170 4_4:-56499065 Msa0689440:three_prime_UTR
TCAACAGTCTGTCGAGTCTC+AGG 0.400798 4_4:+56499621 None:intergenic
TCACCAAGTTTGCTGCTCTC+AGG 0.401717 4_4:+56499651 None:intergenic
ACACTCCCAAACAACAGTTT+GGG 0.405028 4_4:-56498934 Msa0689440:three_prime_UTR
CAGTTTGGGGTGTCTAAATT+GGG 0.407050 4_4:-56498920 Msa0689440:three_prime_UTR
AGAAAAGCGGTTGGATTTGA+AGG 0.414688 4_4:+56501715 None:intergenic
TGGATCTGGAGAAATATTCT+TGG 0.418168 4_4:-56500311 Msa0689440:CDS
CATGAAGAAATTTATGAGTC+AGG 0.419859 4_4:-56499226 Msa0689440:intron
GATGGAGAAAGTGGCTTAGC+AGG 0.426627 4_4:-56501454 Msa0689440:intron
TTTAACCAAGCATGATCAAA+TGG 0.428418 4_4:-56499730 Msa0689440:CDS
GAGAAGAAGGATGGAGAAAG+TGG 0.429003 4_4:-56501463 Msa0689440:CDS
AAGTGAGGAGCTCCAGAAAC+AGG 0.431963 4_4:-56499253 Msa0689440:CDS
CATCTAAAAGTTGGAATCAA+AGG 0.443557 4_4:-56500201 Msa0689440:CDS
GAACCTGAGAGCAGCAAACT+TGG 0.444776 4_4:-56499654 Msa0689440:CDS
CCAGTCCATTTGATCATGCT+TGG 0.448786 4_4:+56499725 None:intergenic
AAGAAGAACCATCTAAAAGT+TGG 0.449134 4_4:-56500210 Msa0689440:CDS
TGAGAAGGAAGATGAGAAGA+AGG 0.450742 4_4:-56501476 Msa0689440:CDS
CGATTTCTTCGACAATGATT+CGG 0.451771 4_4:-56501656 Msa0689440:CDS
AGCTATGGAGGTAGATGAGA+AGG 0.453896 4_4:-56501491 Msa0689440:CDS
TCAGGGTAATGGTATGGATC+TGG 0.458750 4_4:-56500325 Msa0689440:CDS
GGCGGCTGCTGTTGCTGCGG+CGG 0.461162 4_4:-56501521 Msa0689440:CDS
AAGGAAGATGAGAAGAAGGA+TGG 0.482846 4_4:-56501472 Msa0689440:CDS
AAGGTGGAAGAGAACGGAAT+AGG 0.487694 4_4:+56501742 None:intergenic
TCCATACCATTACCCTGATT+GGG 0.488514 4_4:+56500330 None:intergenic
ATGCTCCAGTAACATTCATC+AGG 0.490196 4_4:+56499957 None:intergenic
TAAACCAGAGTTTGATTCGA+TGG 0.492391 4_4:+56498792 None:intergenic
CGACAATGATTCGGCTGAGA+AGG 0.493721 4_4:-56501647 Msa0689440:CDS
AAACCAGAGTTTGATTCGAT+GGG 0.498271 4_4:+56498793 None:intergenic
TGTTTGAGAAGAAGATGAAG+AGG 0.500343 4_4:+56501777 None:intergenic
CAAACATAAACATGAATGGT+TGG 0.500868 4_4:+56498961 None:intergenic
ATCTAAAAGTTGGAATCAAA+GGG 0.502699 4_4:-56500200 Msa0689440:CDS
GGAGCTCCTCACTTGTTGGA+AGG 0.509413 4_4:+56499262 None:intergenic
TGGTGGAAATGTCTTGTTAA+GGG 0.518276 4_4:-56499705 Msa0689440:CDS
TCCCAATCAGGGTAATGGTA+TGG 0.518546 4_4:-56500331 Msa0689440:CDS
GCATTCGAGAAGTCCATCTC+CGG 0.524232 4_4:+56499098 None:intergenic
AGAGAAGGCGAAGGTTGATA+AGG 0.527997 4_4:-56501545 Msa0689440:CDS
TGTATTGCAGCATCCGGAGA+TGG 0.529847 4_4:-56499111 Msa0689440:intron
TCTGTCGAGTCTCAGGATCC+AGG 0.530996 4_4:+56499628 None:intergenic
TTATATCATGGTTTAAGTAA+CGG 0.532998 4_4:-56498833 Msa0689440:three_prime_UTR
AATCCAAACATAAACATGAA+TGG 0.536791 4_4:+56498957 None:intergenic
ATCCGCCGTTCGCGCTGTGA+AGG 0.537892 4_4:-56501617 Msa0689440:CDS
GTGAATGTTCCAGTGCCAAA+TGG 0.540930 4_4:-56500264 Msa0689440:CDS
TTCCCCATCGAATCAAACTC+TGG 0.541453 4_4:-56498796 Msa0689440:three_prime_UTR
TGATGGACAGTTCCCAATCA+GGG 0.541528 4_4:-56500342 Msa0689440:intron
TGCCAAATGGAACAAAATCA+AGG 0.549463 4_4:-56500251 Msa0689440:CDS
GAGCAGCAAACTTGGTGACC+TGG 0.549952 4_4:-56499646 Msa0689440:CDS
AACATAAACATGAATGGTTG+GGG 0.550301 4_4:+56498963 None:intergenic
AAGCTTACATCAATAATTGG+TGG 0.551582 4_4:+56500174 None:intergenic
ACAGTTCCCAATCAGGGTAA+TGG 0.556894 4_4:-56500336 Msa0689440:intron
GATCAGAGGCAGAAGTCTAT+GGG 0.558052 4_4:-56499285 Msa0689440:CDS
GATGAATGTTACTGGAGCAT+AGG 0.561295 4_4:-56499954 Msa0689440:intron
CAATGATTCGGCTGAGAAGG+TGG 0.562539 4_4:-56501644 Msa0689440:CDS
CTGGTGGAAATGTCTTGTTA+AGG 0.563095 4_4:-56499706 Msa0689440:CDS
TAAGATTGCTGCTGAAGAGA+AGG 0.565303 4_4:-56501560 Msa0689440:CDS
GGCGGCGGCTGCTGTTGCTG+CGG 0.565880 4_4:-56501524 Msa0689440:CDS
TGTATTCGACTTCATCGCTA+AGG 0.567639 4_4:-56501686 Msa0689440:CDS
ACAGACTGTTGAAAAGATGA+TGG 0.576647 4_4:-56499610 Msa0689440:intron
AGCATGATCAAATGGACTGG+TGG 0.576780 4_4:-56499722 Msa0689440:CDS
TGGATTTGAAGGATCGAAGG+TGG 0.582135 4_4:+56501726 None:intergenic
TACTCTAAAGATTACCCCAA+AGG 0.588595 4_4:+56499008 None:intergenic
CCAAGCATGATCAAATGGAC+TGG 0.599013 4_4:-56499725 Msa0689440:CDS
GGCGAAGGTTGATAAGGCGG+CGG 0.599571 4_4:-56501539 Msa0689440:CDS
GGATCGAAGGTGGAAGAGAA+CGG 0.602076 4_4:+56501736 None:intergenic
GAAAGCTGCGCTATGATTCG+GGG 0.610589 4_4:-56499063 Msa0689440:three_prime_UTR
GGTTGGATTTGAAGGATCGA+AGG 0.613022 4_4:+56501723 None:intergenic
AAAGCTGCGCTATGATTCGG+GGG 0.616383 4_4:-56499062 Msa0689440:three_prime_UTR
TACCTTCACAGCGCGAACGG+CGG 0.622007 4_4:+56501615 None:intergenic
CTTAGCTTTCTCGGCAGCAA+CGG 0.624150 4_4:+56501579 None:intergenic
CTTTACCTTCACAGCGCGAA+CGG 0.628341 4_4:+56501612 None:intergenic
TGCTGCTGAAGAGAAGGCGA+AGG 0.633806 4_4:-56501554 Msa0689440:CDS
CACTCCCAAACAACAGTTTG+GGG 0.650363 4_4:-56498933 Msa0689440:three_prime_UTR
AACCAGAGTTTGATTCGATG+GGG 0.651671 4_4:+56498794 None:intergenic
TGTGAAGGTAAAGAAAGCTA+AGG 0.656073 4_4:-56501602 Msa0689440:CDS
GAAGGCGAAGGTTGATAAGG+CGG 0.663476 4_4:-56501542 Msa0689440:CDS
TGCGGCGGAGAAGAAAGCTA+TGG 0.665095 4_4:-56501506 Msa0689440:CDS
TATGGGCCTTCCAACAAGTG+AGG 0.673276 4_4:-56499268 Msa0689440:CDS
GGCGGAGAAGAAAGCTATGG+AGG 0.684045 4_4:-56501503 Msa0689440:CDS
AAGCTGCGCTATGATTCGGG+GGG 0.755475 4_4:-56499061 Msa0689440:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATAAAAAAAAACTA+GGG + chr4_4:56499201-56499220 None:intergenic 10.0%
!! TAAAGAAATAAAAAAAAACT+AGG + chr4_4:56499202-56499221 None:intergenic 10.0%
!!! CTTTACTTTATTTAAAATAT+TGG - chr4_4:56499217-56499236 Msa0689440:intron 10.0%
!!! TTATATATTTGAACATATTT+TGG - chr4_4:56501732-56501751 Msa0689440:CDS 10.0%
!! TTGATTGTTTATTAAATCTA+TGG - chr4_4:56499604-56499623 Msa0689440:intron 15.0%
!! ATTGTAAATTATCAAAATGA+TGG - chr4_4:56500068-56500087 Msa0689440:intron 15.0%
!! AAAAAATTCAGATATATAGT+TGG + chr4_4:56500194-56500213 None:intergenic 15.0%
!!! TCATTATTTTAAAATTTCTC+AGG - chr4_4:56500589-56500608 Msa0689440:intron 15.0%
!!! CATTATTTTAAAATTTCTCA+GGG - chr4_4:56500590-56500609 Msa0689440:intron 15.0%
!!! ATTATTTTAAAATTTCTCAG+GGG - chr4_4:56500591-56500610 Msa0689440:intron 15.0%
!!! TTTTAAACTTGTGAAAATTT+TGG - chr4_4:56500741-56500760 Msa0689440:intron 15.0%
!!! AAAATATTTTGAAATACCTT+TGG - chr4_4:56501568-56501587 Msa0689440:CDS 15.0%
!!! AAATATTTTGAAATACCTTT+GGG - chr4_4:56501569-56501588 Msa0689440:CDS 15.0%
!!! ATTTTGTTTTATTTTTATGC+AGG + chr4_4:56501839-56501858 None:intergenic 15.0%
!! TGAAATTTATGAGATAACAA+TGG - chr4_4:56499287-56499306 Msa0689440:CDS 20.0%
!! GAAATTTATGAGATAACAAT+GGG - chr4_4:56499288-56499307 Msa0689440:CDS 20.0%
!!! TGTATGATATTTTATTGCTA+TGG - chr4_4:56499364-56499383 Msa0689440:intron 20.0%
!!! AAATTATCAAAATGATGGAA+TGG - chr4_4:56500073-56500092 Msa0689440:intron 20.0%
!! TTTAACTATTCATTAGCTAA+TGG - chr4_4:56500141-56500160 Msa0689440:intron 20.0%
!! TAAAAGCTTACATCAATAAT+TGG + chr4_4:56500424-56500443 None:intergenic 20.0%
!! TTAAAATAATGAATCAGCAA+AGG + chr4_4:56500581-56500600 None:intergenic 20.0%
!!! TTATTTTAAAATTTCTCAGG+GGG - chr4_4:56500592-56500611 Msa0689440:intron 20.0%
!!! TACTTAATATAACTTGCATT+TGG - chr4_4:56501039-56501058 Msa0689440:intron 20.0%
!!! TATGTATCTATTCTTTTGTT+GGG - chr4_4:56501110-56501129 Msa0689440:intron 20.0%
!!! AGATTTAAATAACACTGTTT+TGG - chr4_4:56501226-56501245 Msa0689440:intron 20.0%
!!! AATATTTTGAAATACCTTTG+GGG - chr4_4:56501570-56501589 Msa0689440:CDS 20.0%
!!! TATTTTGGAGTTTTATATCA+TGG - chr4_4:56501747-56501766 Msa0689440:CDS 20.0%
!! TTATATCATGGTTTAAGTAA+CGG - chr4_4:56501759-56501778 Msa0689440:CDS 20.0%
! TTAAATATGCCAAAATTGCT+AGG - chr4_4:56499467-56499486 Msa0689440:intron 25.0%
! TAAATATGCCAAAATTGCTA+GGG - chr4_4:56499468-56499487 Msa0689440:intron 25.0%
! TAGATGATAAACCAATGATA+AGG - chr4_4:56499650-56499669 Msa0689440:CDS 25.0%
!!! TATGCATATACCACATTTTT+TGG - chr4_4:56499790-56499809 Msa0689440:intron 25.0%
! GTTTCTATTACCAAAAAATG+TGG + chr4_4:56499803-56499822 None:intergenic 25.0%
! ATCTATATCACAAAGACTTT+CGG - chr4_4:56499837-56499856 Msa0689440:intron 25.0%
! ATCTAAAAGTTGGAATCAAA+GGG - chr4_4:56500392-56500411 Msa0689440:intron 25.0%
! TCAAACAAACTAAAAATTCC+AGG + chr4_4:56500545-56500564 None:intergenic 25.0%
! GAATTATGGTCACTTAAAAA+GGG + chr4_4:56500696-56500715 None:intergenic 25.0%
! TGAATTATGGTCACTTAAAA+AGG + chr4_4:56500697-56500716 None:intergenic 25.0%
! TTAAGTGACCATAATTCATT+AGG - chr4_4:56500699-56500718 Msa0689440:intron 25.0%
! ATCATGATCCTAATGAATTA+TGG + chr4_4:56500710-56500729 None:intergenic 25.0%
! ATAATTCATTAGGATCATGA+TGG - chr4_4:56500709-56500728 Msa0689440:intron 25.0%
!!! TTTAAAACCTATTTTTGCAG+AGG - chr4_4:56500817-56500836 Msa0689440:intron 25.0%
!! GTATGTATCTATTCTTTTGT+TGG - chr4_4:56501109-56501128 Msa0689440:intron 25.0%
! ATAATCGAATAGAGATAACT+TGG - chr4_4:56501171-56501190 Msa0689440:intron 25.0%
! CAAACTGTTAAAAGAATACA+GGG + chr4_4:56501288-56501307 None:intergenic 25.0%
! TCAAACTGTTAAAAGAATAC+AGG + chr4_4:56501289-56501308 None:intergenic 25.0%
! AGAAGCAATACAAAAATCAA+AGG + chr4_4:56501396-56501415 None:intergenic 25.0%
! AAACATAAACATGAATGGTT+GGG + chr4_4:56501633-56501652 None:intergenic 25.0%
! AATCCAAACATAAACATGAA+TGG + chr4_4:56501638-56501657 None:intergenic 25.0%
!! GAATACATTTTCGAGAAAAG+CGG + chr4_4:56498893-56498912 None:intergenic 30.0%
! TTTGCTATGAACATTGTGTT+GGG - chr4_4:56499258-56499277 Msa0689440:CDS 30.0%
!! GCAATTTTGGCATATTTAAC+CGG + chr4_4:56499466-56499485 None:intergenic 30.0%
AAATATGCCAAAATTGCTAG+GGG - chr4_4:56499469-56499488 Msa0689440:intron 30.0%
GATGAAATGACAATAATCAC+CGG + chr4_4:56499526-56499545 None:intergenic 30.0%
! TCTACCCAAAATTTTAAGCA+TGG - chr4_4:56499704-56499723 Msa0689440:CDS 30.0%
! CACTCCATGCTTAAAATTTT+GGG + chr4_4:56499711-56499730 None:intergenic 30.0%
! ACACTCCATGCTTAAAATTT+TGG + chr4_4:56499712-56499731 None:intergenic 30.0%
AAAATGTGGTATATGCATAG+TGG + chr4_4:56499789-56499808 None:intergenic 30.0%
! TTTGTGATATAGATGGACTT+AGG + chr4_4:56499831-56499850 None:intergenic 30.0%
GAAAGTCTTTGTGATATAGA+TGG + chr4_4:56499838-56499857 None:intergenic 30.0%
AAACACAATCAAATCAGAGA+GGG + chr4_4:56500024-56500043 None:intergenic 30.0%
! TACATCTTTGCTCTTTTTGA+TGG - chr4_4:56500233-56500252 Msa0689440:CDS 30.0%
! AACCTTGATTTTGTTCCATT+TGG + chr4_4:56500346-56500365 None:intergenic 30.0%
AAGAAGAACCATCTAAAAGT+TGG - chr4_4:56500382-56500401 Msa0689440:intron 30.0%
! CTTTGATTCCAACTTTTAGA+TGG + chr4_4:56500393-56500412 None:intergenic 30.0%
CATCTAAAAGTTGGAATCAA+AGG - chr4_4:56500391-56500410 Msa0689440:intron 30.0%
AAGCTTACATCAATAATTGG+TGG + chr4_4:56500421-56500440 None:intergenic 30.0%
TTTAACCAAGCATGATCAAA+TGG - chr4_4:56500862-56500881 Msa0689440:intron 30.0%
!!! ACTTTTTGGGTGTTAATTTC+AGG + chr4_4:56500917-56500936 None:intergenic 30.0%
GATACATACTTAAATGCAAC+AGG + chr4_4:56501098-56501117 None:intergenic 30.0%
! AAGATGACATTCTAGTTGAA+TGG - chr4_4:56501145-56501164 Msa0689440:intron 30.0%
!! ATAACACTGTTTTGGATTTG+AGG - chr4_4:56501234-56501253 Msa0689440:intron 30.0%
! TCTTTTAACAGTTTGATCAG+AGG - chr4_4:56501293-56501312 Msa0689440:intron 30.0%
CATGAAGAAATTTATGAGTC+AGG - chr4_4:56501366-56501385 Msa0689440:intron 30.0%
CAAATTTACTAGATCGACAA+AGG + chr4_4:56501443-56501462 None:intergenic 30.0%
! ATTTTATGTATTGCAGCATC+CGG - chr4_4:56501475-56501494 Msa0689440:CDS 30.0%
!!! TTAGAGTACTTGTTTTGACT+TGG - chr4_4:56501599-56501618 Msa0689440:CDS 30.0%
AACATAAACATGAATGGTTG+GGG + chr4_4:56501632-56501651 None:intergenic 30.0%
CAAACATAAACATGAATGGT+TGG + chr4_4:56501634-56501653 None:intergenic 30.0%
CAACCATTCATGTTTATGTT+TGG - chr4_4:56501632-56501651 Msa0689440:CDS 30.0%
!! GTTTTGTTCACAAACATGTT+TGG - chr4_4:56501694-56501713 Msa0689440:CDS 30.0%
! AACTCTGGTTTATATATTCC+TGG - chr4_4:56501811-56501830 Msa0689440:CDS 30.0%
!!! TTTATTTTTATGCAGGAACC+AGG + chr4_4:56501832-56501851 None:intergenic 30.0%
CTCTCTTGAACTTTCTCTAA+TGG - chr4_4:56498759-56498778 Msa0689440:three_prime_UTR 35.0%
! TTGGGTTTCTTCTTGGTAAT+CGG + chr4_4:56498794-56498813 None:intergenic 35.0%
AGAAGAAGATGAAGAGGTTT+GGG + chr4_4:56498812-56498831 None:intergenic 35.0%
TGTTTGAGAAGAAGATGAAG+AGG + chr4_4:56498818-56498837 None:intergenic 35.0%
CGAATCATTGTCGAAGAAAT+CGG + chr4_4:56498938-56498957 None:intergenic 35.0%
CGATTTCTTCGACAATGATT+CGG - chr4_4:56498936-56498955 Msa0689440:three_prime_UTR 35.0%
TGTGAAGGTAAAGAAAGCTA+AGG - chr4_4:56498990-56499009 Msa0689440:three_prime_UTR 35.0%
!! GTTTGCTATGAACATTGTGT+TGG - chr4_4:56499257-56499276 Msa0689440:CDS 35.0%
! GTTTAAACCCCTAGCAATTT+TGG + chr4_4:56499479-56499498 None:intergenic 35.0%
CAAACACAATCAAATCAGAG+AGG + chr4_4:56500025-56500044 None:intergenic 35.0%
! CTCTCTGATTTGATTGTGTT+TGG - chr4_4:56500023-56500042 Msa0689440:intron 35.0%
TGGATCTGGAGAAATATTCT+TGG - chr4_4:56500281-56500300 Msa0689440:CDS 35.0%
TGCCAAATGGAACAAAATCA+AGG - chr4_4:56500341-56500360 Msa0689440:intron 35.0%
CAACAGTAACTGCTATAACT+TGG + chr4_4:56500447-56500466 None:intergenic 35.0%
ATAACACAAACAAGTGTCAC+TGG + chr4_4:56500484-56500503 None:intergenic 35.0%
AGAGTCTTCTGATTGTAACT+AGG - chr4_4:56500767-56500786 Msa0689440:intron 35.0%
! TGGTGGAAATGTCTTGTTAA+GGG - chr4_4:56500887-56500906 Msa0689440:intron 35.0%
ACAGACTGTTGAAAAGATGA+TGG - chr4_4:56500982-56501001 Msa0689440:intron 35.0%
TCTTCATGATTTCCTGTTTC+TGG + chr4_4:56501354-56501373 None:intergenic 35.0%
! TACTCTAAAGATTACCCCAA+AGG + chr4_4:56501587-56501606 None:intergenic 35.0%
! AAACCAGAGTTTGATTCGAT+GGG + chr4_4:56501802-56501821 None:intergenic 35.0%
! TAAACCAGAGTTTGATTCGA+TGG + chr4_4:56501803-56501822 None:intergenic 35.0%
! AAGAGGTTTGGGTTTCTTCT+TGG + chr4_4:56498801-56498820 None:intergenic 40.0%
GAGAAGAAGATGAAGAGGTT+TGG + chr4_4:56498813-56498832 None:intergenic 40.0%
!! GAGAACGGAATAGGTTTTGA+GGG + chr4_4:56498844-56498863 None:intergenic 40.0%
! AGAGAACGGAATAGGTTTTG+AGG + chr4_4:56498845-56498864 None:intergenic 40.0%
AGAAAAGCGGTTGGATTTGA+AGG + chr4_4:56498880-56498899 None:intergenic 40.0%
!! ACATTTTCGAGAAAAGCGGT+TGG + chr4_4:56498889-56498908 None:intergenic 40.0%
TGTATTCGACTTCATCGCTA+AGG - chr4_4:56498906-56498925 Msa0689440:three_prime_UTR 40.0%
! AGCAGCAATCTTAGCTTTCT+CGG + chr4_4:56499025-56499044 None:intergenic 40.0%
TAAGATTGCTGCTGAAGAGA+AGG - chr4_4:56499032-56499051 Msa0689440:three_prime_UTR 40.0%
TGAGAAGGAAGATGAGAAGA+AGG - chr4_4:56499116-56499135 Msa0689440:intron 40.0%
AAGGAAGATGAGAAGAAGGA+TGG - chr4_4:56499120-56499139 Msa0689440:intron 40.0%
!! TCCACAATTTCTAGCTCAAC+CGG - chr4_4:56499444-56499463 Msa0689440:intron 40.0%
TGATTCACGGTCCTTATCAT+TGG + chr4_4:56499664-56499683 None:intergenic 40.0%
TAACGCGATCTCTTGATTCA+CGG + chr4_4:56499677-56499696 None:intergenic 40.0%
! ATATAGATGGACTTAGGCAG+GGG + chr4_4:56499825-56499844 None:intergenic 40.0%
! GATATAGATGGACTTAGGCA+GGG + chr4_4:56499826-56499845 None:intergenic 40.0%
! TGATATAGATGGACTTAGGC+AGG + chr4_4:56499827-56499846 None:intergenic 40.0%
ATCCATAGTTTGGACTGACA+GGG + chr4_4:56499897-56499916 None:intergenic 40.0%
ATGGTACCAGATCCATAGTT+TGG + chr4_4:56499907-56499926 None:intergenic 40.0%
ATGGATCTGGTACCATATCT+TGG - chr4_4:56499911-56499930 Msa0689440:intron 40.0%
TGGATCTGGTACCATATCTT+GGG - chr4_4:56499912-56499931 Msa0689440:intron 40.0%
CGTCGCTTCTTGCATTTAAA+TGG + chr4_4:56499966-56499985 None:intergenic 40.0%
TCCATACCATTACCCTGATT+GGG + chr4_4:56500265-56500284 None:intergenic 40.0%
ATCCATACCATTACCCTGAT+TGG + chr4_4:56500266-56500285 None:intergenic 40.0%
! GATTTTGTTCCATTTGGCAC+TGG + chr4_4:56500340-56500359 None:intergenic 40.0%
AATTCCAGGCTAAAGACAGA+AGG + chr4_4:56500531-56500550 None:intergenic 40.0%
TCAAGCCTGATGAATGTTAC+TGG - chr4_4:56500630-56500649 Msa0689440:intron 40.0%
ATGCTCCAGTAACATTCATC+AGG + chr4_4:56500638-56500657 None:intergenic 40.0%
GATGAATGTTACTGGAGCAT+AGG - chr4_4:56500638-56500657 Msa0689440:intron 40.0%
CTCTGATCCTCTGCAAAAAT+AGG + chr4_4:56500827-56500846 None:intergenic 40.0%
! CTGGTGGAAATGTCTTGTTA+AGG - chr4_4:56500886-56500905 Msa0689440:intron 40.0%
! GCTCTCAGGTTCAACTTTTT+GGG + chr4_4:56500930-56500949 None:intergenic 40.0%
! TGCTCTCAGGTTCAACTTTT+TGG + chr4_4:56500931-56500950 None:intergenic 40.0%
TTGGATTTGAGGATTTCTCC+CGG - chr4_4:56501245-56501264 Msa0689440:intron 40.0%
GCAACATTAAACCAACTACC+GGG + chr4_4:56501266-56501285 None:intergenic 40.0%
GGCAACATTAAACCAACTAC+CGG + chr4_4:56501267-56501286 None:intergenic 40.0%
TAGAAAGCTGCGCTATGATT+CGG - chr4_4:56501527-56501546 Msa0689440:CDS 40.0%
TACACTCCCAAACAACAGTT+TGG - chr4_4:56501657-56501676 Msa0689440:CDS 40.0%
ACACTCCCAAACAACAGTTT+GGG - chr4_4:56501658-56501677 Msa0689440:CDS 40.0%
! ACAGTTTGGGGTGTCTAAAT+TGG - chr4_4:56501671-56501690 Msa0689440:CDS 40.0%
! CAGTTTGGGGTGTCTAAATT+GGG - chr4_4:56501672-56501691 Msa0689440:CDS 40.0%
! AACCAGAGTTTGATTCGATG+GGG + chr4_4:56501801-56501820 None:intergenic 40.0%
AAGGTGGAAGAGAACGGAAT+AGG + chr4_4:56498853-56498872 None:intergenic 45.0%
TGGATTTGAAGGATCGAAGG+TGG + chr4_4:56498869-56498888 None:intergenic 45.0%
GGTTGGATTTGAAGGATCGA+AGG + chr4_4:56498872-56498891 None:intergenic 45.0%
!! AGAGAAGGCGAAGGTTGATA+AGG - chr4_4:56499047-56499066 Msa0689440:three_prime_UTR 45.0%
AGCTATGGAGGTAGATGAGA+AGG - chr4_4:56499101-56499120 Msa0689440:CDS 45.0%
GAGAAGAAGGATGGAGAAAG+TGG - chr4_4:56499129-56499148 Msa0689440:intron 45.0%
ACCGGTTGAGCTAGAAATTG+TGG + chr4_4:56499448-56499467 None:intergenic 45.0%
GATCCATAGTTTGGACTGAC+AGG + chr4_4:56499898-56499917 None:intergenic 45.0%
GTCAGTCCAAACTATGGATC+TGG - chr4_4:56499898-56499917 Msa0689440:intron 45.0%
GGATCTGGTACCATATCTTG+GGG - chr4_4:56499913-56499932 Msa0689440:intron 45.0%
GATCTGGTACCATATCTTGG+GGG - chr4_4:56499914-56499933 Msa0689440:intron 45.0%
ACCATATCTTGGGGGAATTC+AGG - chr4_4:56499922-56499941 Msa0689440:intron 45.0%
CCATATCTTGGGGGAATTCA+GGG - chr4_4:56499923-56499942 Msa0689440:intron 45.0%
! TTGATGGACAGTTCCCAATC+AGG - chr4_4:56500249-56500268 Msa0689440:CDS 45.0%
! TGATGGACAGTTCCCAATCA+GGG - chr4_4:56500250-56500269 Msa0689440:CDS 45.0%
ACAGTTCCCAATCAGGGTAA+TGG - chr4_4:56500256-56500275 Msa0689440:CDS 45.0%
! TCCCAATCAGGGTAATGGTA+TGG - chr4_4:56500261-56500280 Msa0689440:CDS 45.0%
! TCAGGGTAATGGTATGGATC+TGG - chr4_4:56500267-56500286 Msa0689440:CDS 45.0%
GTGAATGTTCCAGTGCCAAA+TGG - chr4_4:56500328-56500347 Msa0689440:CDS 45.0%
! CACAAACAAGTGTCACTGGA+AGG + chr4_4:56500480-56500499 None:intergenic 45.0%
CCAGTCCATTTGATCATGCT+TGG + chr4_4:56500870-56500889 None:intergenic 45.0%
CCAAGCATGATCAAATGGAC+TGG - chr4_4:56500867-56500886 Msa0689440:intron 45.0%
!! AGCATGATCAAATGGACTGG+TGG - chr4_4:56500870-56500889 Msa0689440:intron 45.0%
TGATCAGAGGCAGAAGTCTA+TGG - chr4_4:56501306-56501325 Msa0689440:intron 45.0%
GATCAGAGGCAGAAGTCTAT+GGG - chr4_4:56501307-56501326 Msa0689440:intron 45.0%
AGAAAGCTGCGCTATGATTC+GGG - chr4_4:56501528-56501547 Msa0689440:CDS 45.0%
!!! TATGATTCGGGGGGCTTTTT+TGG - chr4_4:56501540-56501559 Msa0689440:CDS 45.0%
CACTCCCAAACAACAGTTTG+GGG - chr4_4:56501659-56501678 Msa0689440:CDS 45.0%
! GACACCCCAAACTGTTGTTT+GGG + chr4_4:56501666-56501685 None:intergenic 45.0%
AGACACCCCAAACTGTTGTT+TGG + chr4_4:56501667-56501686 None:intergenic 45.0%
TTCCCCATCGAATCAAACTC+TGG - chr4_4:56501796-56501815 Msa0689440:CDS 45.0%
!!! TTTACTTTATTTAAAATATT+GGG - chr4_4:56499218-56499237 Msa0689440:intron 5.0%
GGATCGAAGGTGGAAGAGAA+CGG + chr4_4:56498859-56498878 None:intergenic 50.0%
! CGACAATGATTCGGCTGAGA+AGG - chr4_4:56498945-56498964 Msa0689440:three_prime_UTR 50.0%
! CAATGATTCGGCTGAGAAGG+TGG - chr4_4:56498948-56498967 Msa0689440:three_prime_UTR 50.0%
CTTTACCTTCACAGCGCGAA+CGG + chr4_4:56498983-56499002 None:intergenic 50.0%
! CTTAGCTTTCTCGGCAGCAA+CGG + chr4_4:56499016-56499035 None:intergenic 50.0%
!! GAAGGCGAAGGTTGATAAGG+CGG - chr4_4:56499050-56499069 Msa0689440:three_prime_UTR 50.0%
GATGGAGAAAGTGGCTTAGC+AGG - chr4_4:56499138-56499157 Msa0689440:intron 50.0%
AAACCCACACACACGCAAGT+CGG + chr4_4:56499503-56499522 None:intergenic 50.0%
CTCCCTGTCAGTCCAAACTA+TGG - chr4_4:56499892-56499911 Msa0689440:intron 50.0%
CCCTGAATTCCCCCAAGATA+TGG + chr4_4:56499926-56499945 None:intergenic 50.0%
CGTTCCTTCTGTCTTTAGCC+TGG - chr4_4:56500524-56500543 Msa0689440:intron 50.0%
GAACCTGAGAGCAGCAAACT+TGG - chr4_4:56500938-56500957 Msa0689440:intron 50.0%
!! TCACCAAGTTTGCTGCTCTC+AGG + chr4_4:56500944-56500963 None:intergenic 50.0%
TCAACAGTCTGTCGAGTCTC+AGG + chr4_4:56500974-56500993 None:intergenic 50.0%
TGAGGATTTCTCCCGGTAGT+TGG - chr4_4:56501252-56501271 Msa0689440:intron 50.0%
TATGGGCCTTCCAACAAGTG+AGG - chr4_4:56501324-56501343 Msa0689440:intron 50.0%
!! TTCTGGAGCTCCTCACTTGT+TGG + chr4_4:56501337-56501356 None:intergenic 50.0%
AAGTGAGGAGCTCCAGAAAC+AGG - chr4_4:56501339-56501358 Msa0689440:intron 50.0%
TGTATTGCAGCATCCGGAGA+TGG - chr4_4:56501481-56501500 Msa0689440:CDS 50.0%
GCATTCGAGAAGTCCATCTC+CGG + chr4_4:56501497-56501516 None:intergenic 50.0%
GAAAGCTGCGCTATGATTCG+GGG - chr4_4:56501529-56501548 Msa0689440:CDS 50.0%
! AAAGCTGCGCTATGATTCGG+GGG - chr4_4:56501530-56501549 Msa0689440:CDS 50.0%
TGCTGCTGAAGAGAAGGCGA+AGG - chr4_4:56499038-56499057 Msa0689440:three_prime_UTR 55.0%
TGCGGCGGAGAAGAAAGCTA+TGG - chr4_4:56499086-56499105 Msa0689440:CDS 55.0%
GGCGGAGAAGAAAGCTATGG+AGG - chr4_4:56499089-56499108 Msa0689440:CDS 55.0%
AACCCACACACACGCAAGTC+GGG + chr4_4:56499502-56499521 None:intergenic 55.0%
CTTGCGTGTGTGTGGGTTTC+CGG - chr4_4:56499504-56499523 Msa0689440:intron 55.0%
! GAGCAGCAAACTTGGTGACC+TGG - chr4_4:56500946-56500965 Msa0689440:intron 55.0%
TCTGTCGAGTCTCAGGATCC+AGG + chr4_4:56500967-56500986 None:intergenic 55.0%
! GGAGCTCCTCACTTGTTGGA+AGG + chr4_4:56501333-56501352 None:intergenic 55.0%
! AAGCTGCGCTATGATTCGGG+GGG - chr4_4:56501531-56501550 Msa0689440:CDS 55.0%
TACCTTCACAGCGCGAACGG+CGG + chr4_4:56498980-56498999 None:intergenic 60.0%
!! GGCGAAGGTTGATAAGGCGG+CGG - chr4_4:56499053-56499072 Msa0689440:three_prime_UTR 60.0%
! AACCCCGACTTGCGTGTGTG+TGG - chr4_4:56499496-56499515 Msa0689440:intron 60.0%
! ACCCCGACTTGCGTGTGTGT+GGG - chr4_4:56499497-56499516 Msa0689440:intron 60.0%
ACCCACACACACGCAAGTCG+GGG + chr4_4:56499501-56499520 None:intergenic 60.0%
ATCCGCCGTTCGCGCTGTGA+AGG - chr4_4:56498975-56498994 Msa0689440:three_prime_UTR 65.0%
GGCGGCGGCTGCTGTTGCTG+CGG - chr4_4:56499068-56499087 Msa0689440:exon 75.0%
GGCGGCTGCTGTTGCTGCGG+CGG - chr4_4:56499071-56499090 Msa0689440:exon 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56498711 56501903 56498711 ID=Msa0689440;Name=Msa0689440
chr4_4 mRNA 56498711 56501903 56498711 ID=Msa0689440-mRNA-1;Parent=Msa0689440;Name=Msa0689440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=67|1|1|1|1|1|6|374|297
chr4_4 exon 56498711 56499123 56498711 ID=Msa0689440-mRNA-1:exon:14952;Parent=Msa0689440-mRNA-1
chr4_4 exon 56499227 56499310 56499227 ID=Msa0689440-mRNA-1:exon:14951;Parent=Msa0689440-mRNA-1
chr4_4 exon 56499611 56499777 56499611 ID=Msa0689440-mRNA-1:exon:14950;Parent=Msa0689440-mRNA-1
chr4_4 exon 56499955 56500003 56499955 ID=Msa0689440-mRNA-1:exon:14949;Parent=Msa0689440-mRNA-1
chr4_4 exon 56500182 56500354 56500182 ID=Msa0689440-mRNA-1:exon:14948;Parent=Msa0689440-mRNA-1
chr4_4 exon 56501455 56501903 56501455 ID=Msa0689440-mRNA-1:exon:14947;Parent=Msa0689440-mRNA-1
chr4_4 five_prime_UTR 56501837 56501903 56501837 ID=Msa0689440-mRNA-1:five_prime_utr;Parent=Msa0689440-mRNA-1
chr4_4 CDS 56501455 56501836 56501455 ID=Msa0689440-mRNA-1:cds;Parent=Msa0689440-mRNA-1
chr4_4 CDS 56500182 56500354 56500182 ID=Msa0689440-mRNA-1:cds;Parent=Msa0689440-mRNA-1
chr4_4 CDS 56499955 56500003 56499955 ID=Msa0689440-mRNA-1:cds;Parent=Msa0689440-mRNA-1
chr4_4 CDS 56499611 56499777 56499611 ID=Msa0689440-mRNA-1:cds;Parent=Msa0689440-mRNA-1
chr4_4 CDS 56499227 56499310 56499227 ID=Msa0689440-mRNA-1:cds;Parent=Msa0689440-mRNA-1
chr4_4 CDS 56499085 56499123 56499085 ID=Msa0689440-mRNA-1:cds;Parent=Msa0689440-mRNA-1
chr4_4 three_prime_UTR 56498711 56499084 56498711 ID=Msa0689440-mRNA-1:three_prime_utr;Parent=Msa0689440-mRNA-1
Gene Sequence

>Msa0689440

ATGGCGATTATCTCCGATTACCAAGAAGAAACCCAAACCTCTTCATCTTCTTCTCAAACAAAACCCTCAAAACCTATTCCGTTCTCTTCCACCTTCGATCCTTCAAATCCAACCGCTTTTCTCGAAAATGTATTCGACTTCATCGCTAAGGAAAGTACCGATTTCTTCGACAATGATTCGGCTGAGAAGGTGGTTTTATCCGCCGTTCGCGCTGTGAAGGTAAAGAAAGCTAAGGCCGTTGCTGCCGAGAAAGCTAAGATTGCTGCTGAAGAGAAGGCGAAGGTTGATAAGGCGGCGGCTGCTGTTGCTGCGGCGGAGAAGAAAGCTATGGAGGTAGATGAGAAGGAAGATGAGAAGAAGGATGGAGAAAGTGGCTTAGCAGTTCCCAATCAGGGTAATGGTATGGATCTGGAGAAATATTCTTGGACTCAAACTCTTCAAGAGCTCAATGTGAATGTTCCAGTGCCAAATGGAACAAAATCAAGGTTTGTCACATGTGAGATAAAGAAGAACCATCTAAAAGTTGGAATCAAAGGGCAGCCACCAATTATTGATGGGGAGCTGTATAAATCTATCAAGCCTGATGAATGTTACTGGAGCATAGAGGATCAGAGTACACTTTCTATTCTTTTAACCAAGCATGATCAAATGGACTGGTGGAAATGTCTTGTTAAGGGTGATCCTGAAATTAACACCCAAAAAGTTGAACCTGAGAGCAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAGATGATGTTTGATCAGAGGCAGAAGTCTATGGGCCTTCCAACAAGTGAGGAGCTCCAGAAACAGGAAATCATGAAGAAATTTATGAGTCAGCATCCGGAGATGGACTTCTCGAATGCAAAATTATCTTAG

Protein sequence

>Msa0689440

MAIISDYQEETQTSSSSSQTKPSKPIPFSSTFDPSNPTAFLENVFDFIAKESTDFFDNDSAEKVVLSAVRAVKVKKAKAVAAEKAKIAAEEKAKVDKAAAAVAAAEKKAMEVDEKEDEKKDGESGLAVPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSRFVTCEIKKNHLKVGIKGQPPIIDGELYKSIKPDECYWSIEDQSTLSILLTKHDQMDWWKCLVKGDPEINTQKVEPESSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEIMKKFMSQHPEMDFSNAKLS*