AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149440 MtrunA17_Chr1g0147101 96.970 297 7 2 1 297 1 295 0.0 582
Msa0149440 MtrunA17_Chr1g0147091 84.848 297 38 2 1 297 1 290 1.02e-159 446
Msa0149440 MtrunA17_Chr1g0147081 80.602 299 45 3 1 296 1 289 1.86e-153 430
Msa0149440 MtrunA17_Chr6g0477351 73.438 128 23 2 10 137 28 144 1.74e-37 130
Msa0149440 MtrunA17_Chr3g0104601 24.684 158 83 2 140 297 21 142 2.37e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149440 AT5G53400.1 59.582 287 100 2 26 297 19 304 5.02e-116 336
Msa0149440 AT4G27890.1 56.066 305 114 6 1 297 1 293 9.33e-109 317
Msa0149440 AT5G58740.1 25.949 158 81 3 140 297 21 142 9.32e-14 68.2

Find 101 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATGATTTCCTGTTTC+TGG 0.058297 1_4:+10234331 None:intergenic
ACAGTTTGGGGTGTCTAAAT+TGG 0.188690 1_4:-10234011 Msa0149440:three_prime_UTR
TTATATATTTGAACATATTT+TGG 0.220188 1_4:-10233950 Msa0149440:three_prime_UTR
TAAAAGCTTACATCAATAAT+TGG 0.250303 1_4:+10235261 None:intergenic
AACTCTGGTTTATATATTCC+TGG 0.285035 1_4:-10233871 Msa0149440:three_prime_UTR
CAACCATTCATGTTTATGTT+TGG 0.295885 1_4:-10234050 Msa0149440:three_prime_UTR
CTCTCTTGAACTTTCTCTAA+TGG 0.315405 1_4:-10236923 Msa0149440:exon
AAGAGGTTTGGGTTTCTTCT+TGG 0.317575 1_4:+10236884 None:intergenic
TGATCAGAGGCAGAAGTCTA+TGG 0.321181 1_4:-10234376 Msa0149440:CDS
AGAAAGCTGCGCTATGATTC+GGG 0.325747 1_4:-10234154 Msa0149440:three_prime_UTR
TACACTCCCAAACAACAGTT+TGG 0.329221 1_4:-10234025 Msa0149440:three_prime_UTR
AGAAGAAGATGAAGAGGTTT+GGG 0.330750 1_4:+10236873 None:intergenic
GAGAAGAAGATGAAGAGGTT+TGG 0.337011 1_4:+10236872 None:intergenic
AGACACCCCAAACTGTTGTT+TGG 0.354071 1_4:+10234018 None:intergenic
TTCTGGAGCTCCTCACTTGT+TGG 0.356328 1_4:+10234348 None:intergenic
TTGGGTTTCTTCTTGGTAAT+CGG 0.361888 1_4:+10236891 None:intergenic
TCAAGCCTGATGAATGTTAC+TGG 0.367377 1_4:-10235052 Msa0149440:CDS
ATCCATACCATTACCCTGAT+TGG 0.375160 1_4:+10235419 None:intergenic
AGCAGCAATCTTAGCTTTCT+CGG 0.384597 1_4:+10236660 None:intergenic
CGAATCATTGTCGAAGAAAT+CGG 0.389616 1_4:+10236747 None:intergenic
GACACCCCAAACTGTTGTTT+GGG 0.392691 1_4:+10234019 None:intergenic
AAACATAAACATGAATGGTT+GGG 0.395039 1_4:+10234052 None:intergenic
TTGATGGACAGTTCCCAATC+AGG 0.395904 1_4:-10235433 Msa0149440:intron
TAGAAAGCTGCGCTATGATT+CGG 0.396170 1_4:-10234155 Msa0149440:three_prime_UTR
TCAACAGTCTGTCGAGTCTC+AGG 0.400798 1_4:+10234711 None:intergenic
TCACCAAGTTTGCTGCTCTC+AGG 0.401717 1_4:+10234741 None:intergenic
ACACTCCCAAACAACAGTTT+GGG 0.405028 1_4:-10234024 Msa0149440:three_prime_UTR
CAGTTTGGGGTGTCTAAATT+GGG 0.407050 1_4:-10234010 Msa0149440:three_prime_UTR
AGAAAAGCGGTTGGATTTGA+AGG 0.414688 1_4:+10236805 None:intergenic
TGGATCTGGAGAAATATTCT+TGG 0.418168 1_4:-10235401 Msa0149440:CDS
CATGAAGAAATTTATGAGTC+AGG 0.419859 1_4:-10234316 Msa0149440:intron
GATGGAGAAAGTGGCTTAGC+AGG 0.426627 1_4:-10236544 Msa0149440:intron
TTTAACCAAGCATGATCAAA+TGG 0.428418 1_4:-10234820 Msa0149440:CDS
GAGAAGAAGGATGGAGAAAG+TGG 0.429003 1_4:-10236553 Msa0149440:CDS
AAGTGAGGAGCTCCAGAAAC+AGG 0.431963 1_4:-10234343 Msa0149440:CDS
CATCTAAAAGTTGGAATCAA+AGG 0.443557 1_4:-10235291 Msa0149440:CDS
GAACCTGAGAGCAGCAAACT+TGG 0.444776 1_4:-10234744 Msa0149440:CDS
CCAGTCCATTTGATCATGCT+TGG 0.448786 1_4:+10234815 None:intergenic
AAGAAGAACCATCTAAAAGT+TGG 0.449134 1_4:-10235300 Msa0149440:CDS
TGAGAAGGAAGATGAGAAGA+AGG 0.450742 1_4:-10236566 Msa0149440:CDS
CGATTTCTTCGACAATGATT+CGG 0.451771 1_4:-10236746 Msa0149440:CDS
AGCTATGGAGGTAGATGAGA+AGG 0.453896 1_4:-10236581 Msa0149440:CDS
TCAGGGTAATGGTATGGATC+TGG 0.458750 1_4:-10235415 Msa0149440:CDS
GGCGGCTGCTGTTGCTGCGG+CGG 0.461162 1_4:-10236611 Msa0149440:CDS
AAGGAAGATGAGAAGAAGGA+TGG 0.482846 1_4:-10236562 Msa0149440:CDS
AAGGTGGAAGAGAACGGAAT+AGG 0.487694 1_4:+10236832 None:intergenic
TCCATACCATTACCCTGATT+GGG 0.488514 1_4:+10235420 None:intergenic
ATGCTCCAGTAACATTCATC+AGG 0.490196 1_4:+10235047 None:intergenic
TAAACCAGAGTTTGATTCGA+TGG 0.492391 1_4:+10233882 None:intergenic
CGACAATGATTCGGCTGAGA+AGG 0.493721 1_4:-10236737 Msa0149440:CDS
AAACCAGAGTTTGATTCGAT+GGG 0.498271 1_4:+10233883 None:intergenic
TGTTTGAGAAGAAGATGAAG+AGG 0.500343 1_4:+10236867 None:intergenic
CAAACATAAACATGAATGGT+TGG 0.500868 1_4:+10234051 None:intergenic
ATCTAAAAGTTGGAATCAAA+GGG 0.502699 1_4:-10235290 Msa0149440:CDS
GGAGCTCCTCACTTGTTGGA+AGG 0.509413 1_4:+10234352 None:intergenic
TGGTGGAAATGTCTTGTTAA+GGG 0.518276 1_4:-10234795 Msa0149440:CDS
TCCCAATCAGGGTAATGGTA+TGG 0.518546 1_4:-10235421 Msa0149440:CDS
GCATTCGAGAAGTCCATCTC+CGG 0.524232 1_4:+10234188 None:intergenic
AGAGAAGGCGAAGGTTGATA+AGG 0.527997 1_4:-10236635 Msa0149440:CDS
TGTATTGCAGCATCCGGAGA+TGG 0.529847 1_4:-10234201 Msa0149440:intron
TCTGTCGAGTCTCAGGATCC+AGG 0.530996 1_4:+10234718 None:intergenic
TTATATCATGGTTTAAGTAA+CGG 0.532998 1_4:-10233923 Msa0149440:three_prime_UTR
AATCCAAACATAAACATGAA+TGG 0.536791 1_4:+10234047 None:intergenic
ATCCGCCGTTCGCGCTGTGA+AGG 0.537892 1_4:-10236707 Msa0149440:CDS
GTGAATGTTCCAGTGCCAAA+TGG 0.540930 1_4:-10235354 Msa0149440:CDS
TTCCCCATCGAATCAAACTC+TGG 0.541453 1_4:-10233886 Msa0149440:three_prime_UTR
TGATGGACAGTTCCCAATCA+GGG 0.541528 1_4:-10235432 Msa0149440:intron
TGCCAAATGGAACAAAATCA+AGG 0.549463 1_4:-10235341 Msa0149440:CDS
GAGCAGCAAACTTGGTGACC+TGG 0.549952 1_4:-10234736 Msa0149440:CDS
AACATAAACATGAATGGTTG+GGG 0.550301 1_4:+10234053 None:intergenic
AAGCTTACATCAATAATTGG+TGG 0.551582 1_4:+10235264 None:intergenic
ACAGTTCCCAATCAGGGTAA+TGG 0.556894 1_4:-10235426 Msa0149440:intron
GATCAGAGGCAGAAGTCTAT+GGG 0.558052 1_4:-10234375 Msa0149440:CDS
GATGAATGTTACTGGAGCAT+AGG 0.561295 1_4:-10235044 Msa0149440:intron
CAATGATTCGGCTGAGAAGG+TGG 0.562539 1_4:-10236734 Msa0149440:CDS
CTGGTGGAAATGTCTTGTTA+AGG 0.563095 1_4:-10234796 Msa0149440:CDS
TAAGATTGCTGCTGAAGAGA+AGG 0.565303 1_4:-10236650 Msa0149440:CDS
GGCGGCGGCTGCTGTTGCTG+CGG 0.565880 1_4:-10236614 Msa0149440:CDS
TGTATTCGACTTCATCGCTA+AGG 0.567639 1_4:-10236776 Msa0149440:CDS
ACAGACTGTTGAAAAGATGA+TGG 0.576647 1_4:-10234700 Msa0149440:intron
AGCATGATCAAATGGACTGG+TGG 0.576780 1_4:-10234812 Msa0149440:CDS
TGGATTTGAAGGATCGAAGG+TGG 0.582135 1_4:+10236816 None:intergenic
TACTCTAAAGATTACCCCAA+AGG 0.588595 1_4:+10234098 None:intergenic
CCAAGCATGATCAAATGGAC+TGG 0.599013 1_4:-10234815 Msa0149440:CDS
GGCGAAGGTTGATAAGGCGG+CGG 0.599571 1_4:-10236629 Msa0149440:CDS
GGATCGAAGGTGGAAGAGAA+CGG 0.602076 1_4:+10236826 None:intergenic
GAAAGCTGCGCTATGATTCG+GGG 0.610589 1_4:-10234153 Msa0149440:three_prime_UTR
GGTTGGATTTGAAGGATCGA+AGG 0.613022 1_4:+10236813 None:intergenic
AAAGCTGCGCTATGATTCGG+GGG 0.616383 1_4:-10234152 Msa0149440:three_prime_UTR
TACCTTCACAGCGCGAACGG+CGG 0.622007 1_4:+10236705 None:intergenic
CTTAGCTTTCTCGGCAGCAA+CGG 0.624150 1_4:+10236669 None:intergenic
CTTTACCTTCACAGCGCGAA+CGG 0.628341 1_4:+10236702 None:intergenic
TGCTGCTGAAGAGAAGGCGA+AGG 0.633806 1_4:-10236644 Msa0149440:CDS
CACTCCCAAACAACAGTTTG+GGG 0.650363 1_4:-10234023 Msa0149440:three_prime_UTR
AACCAGAGTTTGATTCGATG+GGG 0.651671 1_4:+10233884 None:intergenic
TGTGAAGGTAAAGAAAGCTA+AGG 0.656073 1_4:-10236692 Msa0149440:CDS
GAAGGCGAAGGTTGATAAGG+CGG 0.663476 1_4:-10236632 Msa0149440:CDS
TGCGGCGGAGAAGAAAGCTA+TGG 0.665095 1_4:-10236596 Msa0149440:CDS
TATGGGCCTTCCAACAAGTG+AGG 0.673276 1_4:-10234358 Msa0149440:CDS
GGCGGAGAAGAAAGCTATGG+AGG 0.684045 1_4:-10236593 Msa0149440:CDS
AAGCTGCGCTATGATTCGGG+GGG 0.755475 1_4:-10234151 Msa0149440:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATAAAAAAAAACTA+GGG + chr1_4:10234295-10234314 None:intergenic 10.0%
!! TAAAGAAATAAAAAAAAACT+AGG + chr1_4:10234296-10234315 None:intergenic 10.0%
!!! CTTTACTTTATTTAAAATAT+TGG - chr1_4:10234311-10234330 Msa0149440:intron 10.0%
!!! TTATATATTTGAACATATTT+TGG - chr1_4:10236826-10236845 Msa0149440:CDS 10.0%
!! TTGATTGTTTATTAAATCTA+TGG - chr1_4:10234698-10234717 Msa0149440:intron 15.0%
!! ATTGTAAATTATCAAAATGA+TGG - chr1_4:10235162-10235181 Msa0149440:intron 15.0%
!! AAAAAATTCAGATATATAGT+TGG + chr1_4:10235288-10235307 None:intergenic 15.0%
!!! TCATTATTTTAAAATTTCTC+AGG - chr1_4:10235683-10235702 Msa0149440:intron 15.0%
!!! CATTATTTTAAAATTTCTCA+GGG - chr1_4:10235684-10235703 Msa0149440:intron 15.0%
!!! ATTATTTTAAAATTTCTCAG+GGG - chr1_4:10235685-10235704 Msa0149440:intron 15.0%
!!! TTTTAAACTTGTGAAAATTT+TGG - chr1_4:10235835-10235854 Msa0149440:intron 15.0%
!!! AAAATATTTTGAAATACCTT+TGG - chr1_4:10236662-10236681 Msa0149440:CDS 15.0%
!!! AAATATTTTGAAATACCTTT+GGG - chr1_4:10236663-10236682 Msa0149440:CDS 15.0%
!!! ATTTTGTTTTATTTTTATGC+AGG + chr1_4:10236933-10236952 None:intergenic 15.0%
!! TGAAATTTATGAGATAACAA+TGG - chr1_4:10234381-10234400 Msa0149440:CDS 20.0%
!! GAAATTTATGAGATAACAAT+GGG - chr1_4:10234382-10234401 Msa0149440:intron 20.0%
!!! TGTATGATATTTTATTGCTA+TGG - chr1_4:10234458-10234477 Msa0149440:intron 20.0%
!!! AAATTATCAAAATGATGGAA+TGG - chr1_4:10235167-10235186 Msa0149440:intron 20.0%
!! TTTAACTATTCATTAGCTAA+TGG - chr1_4:10235235-10235254 Msa0149440:intron 20.0%
!! TAAAAGCTTACATCAATAAT+TGG + chr1_4:10235518-10235537 None:intergenic 20.0%
!! TTAAAATAATGAATCAGCAA+AGG + chr1_4:10235675-10235694 None:intergenic 20.0%
!!! TTATTTTAAAATTTCTCAGG+GGG - chr1_4:10235686-10235705 Msa0149440:intron 20.0%
!!! TACTTAATATAACTTGCATT+TGG - chr1_4:10236133-10236152 Msa0149440:intron 20.0%
!!! TATGTATCTATTCTTTTGTT+GGG - chr1_4:10236204-10236223 Msa0149440:intron 20.0%
!!! AGATTTAAATAACACTGTTT+TGG - chr1_4:10236320-10236339 Msa0149440:intron 20.0%
!!! AATATTTTGAAATACCTTTG+GGG - chr1_4:10236664-10236683 Msa0149440:CDS 20.0%
!!! TATTTTGGAGTTTTATATCA+TGG - chr1_4:10236841-10236860 Msa0149440:CDS 20.0%
!! TTATATCATGGTTTAAGTAA+CGG - chr1_4:10236853-10236872 Msa0149440:CDS 20.0%
! TTAAATATGCCAAAATTGCT+AGG - chr1_4:10234561-10234580 Msa0149440:intron 25.0%
! TAAATATGCCAAAATTGCTA+GGG - chr1_4:10234562-10234581 Msa0149440:intron 25.0%
! TAGATGATAAACCAATGATA+AGG - chr1_4:10234744-10234763 Msa0149440:CDS 25.0%
!!! TATGCATATACCACATTTTT+TGG - chr1_4:10234884-10234903 Msa0149440:intron 25.0%
! GTTTCTATTACCAAAAAATG+TGG + chr1_4:10234897-10234916 None:intergenic 25.0%
! ATCTATATCACAAAGACTTT+CGG - chr1_4:10234931-10234950 Msa0149440:intron 25.0%
! ATCTAAAAGTTGGAATCAAA+GGG - chr1_4:10235486-10235505 Msa0149440:intron 25.0%
! TCAAACAAACTAAAAATTCC+AGG + chr1_4:10235639-10235658 None:intergenic 25.0%
! GAATTATGGTCACTTAAAAA+GGG + chr1_4:10235790-10235809 None:intergenic 25.0%
! TGAATTATGGTCACTTAAAA+AGG + chr1_4:10235791-10235810 None:intergenic 25.0%
! TTAAGTGACCATAATTCATT+AGG - chr1_4:10235793-10235812 Msa0149440:intron 25.0%
! ATCATGATCCTAATGAATTA+TGG + chr1_4:10235804-10235823 None:intergenic 25.0%
! ATAATTCATTAGGATCATGA+TGG - chr1_4:10235803-10235822 Msa0149440:intron 25.0%
!!! TTTAAAACCTATTTTTGCAG+AGG - chr1_4:10235911-10235930 Msa0149440:intron 25.0%
!! GTATGTATCTATTCTTTTGT+TGG - chr1_4:10236203-10236222 Msa0149440:intron 25.0%
! ATAATCGAATAGAGATAACT+TGG - chr1_4:10236265-10236284 Msa0149440:intron 25.0%
! CAAACTGTTAAAAGAATACA+GGG + chr1_4:10236382-10236401 None:intergenic 25.0%
! TCAAACTGTTAAAAGAATAC+AGG + chr1_4:10236383-10236402 None:intergenic 25.0%
! AGAAGCAATACAAAAATCAA+AGG + chr1_4:10236490-10236509 None:intergenic 25.0%
! AAACATAAACATGAATGGTT+GGG + chr1_4:10236727-10236746 None:intergenic 25.0%
! AATCCAAACATAAACATGAA+TGG + chr1_4:10236732-10236751 None:intergenic 25.0%
!! GAATACATTTTCGAGAAAAG+CGG + chr1_4:10233987-10234006 None:intergenic 30.0%
! TTTGCTATGAACATTGTGTT+GGG - chr1_4:10234352-10234371 Msa0149440:CDS 30.0%
!! GCAATTTTGGCATATTTAAC+CGG + chr1_4:10234560-10234579 None:intergenic 30.0%
AAATATGCCAAAATTGCTAG+GGG - chr1_4:10234563-10234582 Msa0149440:intron 30.0%
GATGAAATGACAATAATCAC+CGG + chr1_4:10234620-10234639 None:intergenic 30.0%
! TCTACCCAAAATTTTAAGCA+TGG - chr1_4:10234798-10234817 Msa0149440:CDS 30.0%
! CACTCCATGCTTAAAATTTT+GGG + chr1_4:10234805-10234824 None:intergenic 30.0%
! ACACTCCATGCTTAAAATTT+TGG + chr1_4:10234806-10234825 None:intergenic 30.0%
AAAATGTGGTATATGCATAG+TGG + chr1_4:10234883-10234902 None:intergenic 30.0%
! TTTGTGATATAGATGGACTT+AGG + chr1_4:10234925-10234944 None:intergenic 30.0%
GAAAGTCTTTGTGATATAGA+TGG + chr1_4:10234932-10234951 None:intergenic 30.0%
AAACACAATCAAATCAGAGA+GGG + chr1_4:10235118-10235137 None:intergenic 30.0%
! TACATCTTTGCTCTTTTTGA+TGG - chr1_4:10235327-10235346 Msa0149440:CDS 30.0%
! AACCTTGATTTTGTTCCATT+TGG + chr1_4:10235440-10235459 None:intergenic 30.0%
AAGAAGAACCATCTAAAAGT+TGG - chr1_4:10235476-10235495 Msa0149440:intron 30.0%
! CTTTGATTCCAACTTTTAGA+TGG + chr1_4:10235487-10235506 None:intergenic 30.0%
CATCTAAAAGTTGGAATCAA+AGG - chr1_4:10235485-10235504 Msa0149440:intron 30.0%
AAGCTTACATCAATAATTGG+TGG + chr1_4:10235515-10235534 None:intergenic 30.0%
TTTAACCAAGCATGATCAAA+TGG - chr1_4:10235956-10235975 Msa0149440:intron 30.0%
!!! ACTTTTTGGGTGTTAATTTC+AGG + chr1_4:10236011-10236030 None:intergenic 30.0%
GATACATACTTAAATGCAAC+AGG + chr1_4:10236192-10236211 None:intergenic 30.0%
! AAGATGACATTCTAGTTGAA+TGG - chr1_4:10236239-10236258 Msa0149440:intron 30.0%
!! ATAACACTGTTTTGGATTTG+AGG - chr1_4:10236328-10236347 Msa0149440:intron 30.0%
! TCTTTTAACAGTTTGATCAG+AGG - chr1_4:10236387-10236406 Msa0149440:intron 30.0%
CATGAAGAAATTTATGAGTC+AGG - chr1_4:10236460-10236479 Msa0149440:intron 30.0%
CAAATTTACTAGATCGACAA+AGG + chr1_4:10236537-10236556 None:intergenic 30.0%
! ATTTTATGTATTGCAGCATC+CGG - chr1_4:10236569-10236588 Msa0149440:CDS 30.0%
!!! TTAGAGTACTTGTTTTGACT+TGG - chr1_4:10236693-10236712 Msa0149440:CDS 30.0%
AACATAAACATGAATGGTTG+GGG + chr1_4:10236726-10236745 None:intergenic 30.0%
CAAACATAAACATGAATGGT+TGG + chr1_4:10236728-10236747 None:intergenic 30.0%
CAACCATTCATGTTTATGTT+TGG - chr1_4:10236726-10236745 Msa0149440:CDS 30.0%
!! GTTTTGTTCACAAACATGTT+TGG - chr1_4:10236788-10236807 Msa0149440:CDS 30.0%
! AACTCTGGTTTATATATTCC+TGG - chr1_4:10236905-10236924 Msa0149440:CDS 30.0%
!!! TTTATTTTTATGCAGGAACC+AGG + chr1_4:10236926-10236945 None:intergenic 30.0%
CTCTCTTGAACTTTCTCTAA+TGG - chr1_4:10233853-10233872 Msa0149440:three_prime_UTR 35.0%
! TTGGGTTTCTTCTTGGTAAT+CGG + chr1_4:10233888-10233907 None:intergenic 35.0%
AGAAGAAGATGAAGAGGTTT+GGG + chr1_4:10233906-10233925 None:intergenic 35.0%
TGTTTGAGAAGAAGATGAAG+AGG + chr1_4:10233912-10233931 None:intergenic 35.0%
CGAATCATTGTCGAAGAAAT+CGG + chr1_4:10234032-10234051 None:intergenic 35.0%
CGATTTCTTCGACAATGATT+CGG - chr1_4:10234030-10234049 Msa0149440:three_prime_UTR 35.0%
TGTGAAGGTAAAGAAAGCTA+AGG - chr1_4:10234084-10234103 Msa0149440:three_prime_UTR 35.0%
!! GTTTGCTATGAACATTGTGT+TGG - chr1_4:10234351-10234370 Msa0149440:CDS 35.0%
! GTTTAAACCCCTAGCAATTT+TGG + chr1_4:10234573-10234592 None:intergenic 35.0%
CAAACACAATCAAATCAGAG+AGG + chr1_4:10235119-10235138 None:intergenic 35.0%
! CTCTCTGATTTGATTGTGTT+TGG - chr1_4:10235117-10235136 Msa0149440:intron 35.0%
TGGATCTGGAGAAATATTCT+TGG - chr1_4:10235375-10235394 Msa0149440:CDS 35.0%
TGCCAAATGGAACAAAATCA+AGG - chr1_4:10235435-10235454 Msa0149440:intron 35.0%
CAACAGTAACTGCTATAACT+TGG + chr1_4:10235541-10235560 None:intergenic 35.0%
ATAACACAAACAAGTGTCAC+TGG + chr1_4:10235578-10235597 None:intergenic 35.0%
AGAGTCTTCTGATTGTAACT+AGG - chr1_4:10235861-10235880 Msa0149440:intron 35.0%
! TGGTGGAAATGTCTTGTTAA+GGG - chr1_4:10235981-10236000 Msa0149440:intron 35.0%
ACAGACTGTTGAAAAGATGA+TGG - chr1_4:10236076-10236095 Msa0149440:intron 35.0%
TCTTCATGATTTCCTGTTTC+TGG + chr1_4:10236448-10236467 None:intergenic 35.0%
! TACTCTAAAGATTACCCCAA+AGG + chr1_4:10236681-10236700 None:intergenic 35.0%
! AAACCAGAGTTTGATTCGAT+GGG + chr1_4:10236896-10236915 None:intergenic 35.0%
! TAAACCAGAGTTTGATTCGA+TGG + chr1_4:10236897-10236916 None:intergenic 35.0%
! AAGAGGTTTGGGTTTCTTCT+TGG + chr1_4:10233895-10233914 None:intergenic 40.0%
GAGAAGAAGATGAAGAGGTT+TGG + chr1_4:10233907-10233926 None:intergenic 40.0%
!! GAGAACGGAATAGGTTTTGA+GGG + chr1_4:10233938-10233957 None:intergenic 40.0%
! AGAGAACGGAATAGGTTTTG+AGG + chr1_4:10233939-10233958 None:intergenic 40.0%
AGAAAAGCGGTTGGATTTGA+AGG + chr1_4:10233974-10233993 None:intergenic 40.0%
!! ACATTTTCGAGAAAAGCGGT+TGG + chr1_4:10233983-10234002 None:intergenic 40.0%
TGTATTCGACTTCATCGCTA+AGG - chr1_4:10234000-10234019 Msa0149440:three_prime_UTR 40.0%
! AGCAGCAATCTTAGCTTTCT+CGG + chr1_4:10234119-10234138 None:intergenic 40.0%
TAAGATTGCTGCTGAAGAGA+AGG - chr1_4:10234126-10234145 Msa0149440:three_prime_UTR 40.0%
TGAGAAGGAAGATGAGAAGA+AGG - chr1_4:10234210-10234229 Msa0149440:intron 40.0%
AAGGAAGATGAGAAGAAGGA+TGG - chr1_4:10234214-10234233 Msa0149440:intron 40.0%
!! TCCACAATTTCTAGCTCAAC+CGG - chr1_4:10234538-10234557 Msa0149440:intron 40.0%
TGATTCACGGTCCTTATCAT+TGG + chr1_4:10234758-10234777 None:intergenic 40.0%
TAACGCGATCTCTTGATTCA+CGG + chr1_4:10234771-10234790 None:intergenic 40.0%
! ATATAGATGGACTTAGGCAG+GGG + chr1_4:10234919-10234938 None:intergenic 40.0%
! GATATAGATGGACTTAGGCA+GGG + chr1_4:10234920-10234939 None:intergenic 40.0%
! TGATATAGATGGACTTAGGC+AGG + chr1_4:10234921-10234940 None:intergenic 40.0%
ATCCATAGTTTGGACTGACA+GGG + chr1_4:10234991-10235010 None:intergenic 40.0%
ATGGTACCAGATCCATAGTT+TGG + chr1_4:10235001-10235020 None:intergenic 40.0%
ATGGATCTGGTACCATATCT+TGG - chr1_4:10235005-10235024 Msa0149440:intron 40.0%
TGGATCTGGTACCATATCTT+GGG - chr1_4:10235006-10235025 Msa0149440:intron 40.0%
CGTCGCTTCTTGCATTTAAA+TGG + chr1_4:10235060-10235079 None:intergenic 40.0%
TCCATACCATTACCCTGATT+GGG + chr1_4:10235359-10235378 None:intergenic 40.0%
ATCCATACCATTACCCTGAT+TGG + chr1_4:10235360-10235379 None:intergenic 40.0%
! GATTTTGTTCCATTTGGCAC+TGG + chr1_4:10235434-10235453 None:intergenic 40.0%
AATTCCAGGCTAAAGACAGA+AGG + chr1_4:10235625-10235644 None:intergenic 40.0%
TCAAGCCTGATGAATGTTAC+TGG - chr1_4:10235724-10235743 Msa0149440:intron 40.0%
ATGCTCCAGTAACATTCATC+AGG + chr1_4:10235732-10235751 None:intergenic 40.0%
GATGAATGTTACTGGAGCAT+AGG - chr1_4:10235732-10235751 Msa0149440:intron 40.0%
CTCTGATCCTCTGCAAAAAT+AGG + chr1_4:10235921-10235940 None:intergenic 40.0%
! CTGGTGGAAATGTCTTGTTA+AGG - chr1_4:10235980-10235999 Msa0149440:intron 40.0%
! GCTCTCAGGTTCAACTTTTT+GGG + chr1_4:10236024-10236043 None:intergenic 40.0%
! TGCTCTCAGGTTCAACTTTT+TGG + chr1_4:10236025-10236044 None:intergenic 40.0%
TTGGATTTGAGGATTTCTCC+CGG - chr1_4:10236339-10236358 Msa0149440:intron 40.0%
GCAACATTAAACCAACTACC+GGG + chr1_4:10236360-10236379 None:intergenic 40.0%
GGCAACATTAAACCAACTAC+CGG + chr1_4:10236361-10236380 None:intergenic 40.0%
TAGAAAGCTGCGCTATGATT+CGG - chr1_4:10236621-10236640 Msa0149440:CDS 40.0%
TACACTCCCAAACAACAGTT+TGG - chr1_4:10236751-10236770 Msa0149440:CDS 40.0%
ACACTCCCAAACAACAGTTT+GGG - chr1_4:10236752-10236771 Msa0149440:CDS 40.0%
! ACAGTTTGGGGTGTCTAAAT+TGG - chr1_4:10236765-10236784 Msa0149440:CDS 40.0%
! CAGTTTGGGGTGTCTAAATT+GGG - chr1_4:10236766-10236785 Msa0149440:CDS 40.0%
! AACCAGAGTTTGATTCGATG+GGG + chr1_4:10236895-10236914 None:intergenic 40.0%
AAGGTGGAAGAGAACGGAAT+AGG + chr1_4:10233947-10233966 None:intergenic 45.0%
TGGATTTGAAGGATCGAAGG+TGG + chr1_4:10233963-10233982 None:intergenic 45.0%
GGTTGGATTTGAAGGATCGA+AGG + chr1_4:10233966-10233985 None:intergenic 45.0%
!! AGAGAAGGCGAAGGTTGATA+AGG - chr1_4:10234141-10234160 Msa0149440:three_prime_UTR 45.0%
AGCTATGGAGGTAGATGAGA+AGG - chr1_4:10234195-10234214 Msa0149440:intron 45.0%
GAGAAGAAGGATGGAGAAAG+TGG - chr1_4:10234223-10234242 Msa0149440:intron 45.0%
ACCGGTTGAGCTAGAAATTG+TGG + chr1_4:10234542-10234561 None:intergenic 45.0%
GATCCATAGTTTGGACTGAC+AGG + chr1_4:10234992-10235011 None:intergenic 45.0%
GTCAGTCCAAACTATGGATC+TGG - chr1_4:10234992-10235011 Msa0149440:intron 45.0%
GGATCTGGTACCATATCTTG+GGG - chr1_4:10235007-10235026 Msa0149440:intron 45.0%
GATCTGGTACCATATCTTGG+GGG - chr1_4:10235008-10235027 Msa0149440:intron 45.0%
ACCATATCTTGGGGGAATTC+AGG - chr1_4:10235016-10235035 Msa0149440:intron 45.0%
CCATATCTTGGGGGAATTCA+GGG - chr1_4:10235017-10235036 Msa0149440:intron 45.0%
! TTGATGGACAGTTCCCAATC+AGG - chr1_4:10235343-10235362 Msa0149440:CDS 45.0%
! TGATGGACAGTTCCCAATCA+GGG - chr1_4:10235344-10235363 Msa0149440:CDS 45.0%
ACAGTTCCCAATCAGGGTAA+TGG - chr1_4:10235350-10235369 Msa0149440:CDS 45.0%
! TCCCAATCAGGGTAATGGTA+TGG - chr1_4:10235355-10235374 Msa0149440:CDS 45.0%
! TCAGGGTAATGGTATGGATC+TGG - chr1_4:10235361-10235380 Msa0149440:CDS 45.0%
GTGAATGTTCCAGTGCCAAA+TGG - chr1_4:10235422-10235441 Msa0149440:CDS 45.0%
! CACAAACAAGTGTCACTGGA+AGG + chr1_4:10235574-10235593 None:intergenic 45.0%
CCAGTCCATTTGATCATGCT+TGG + chr1_4:10235964-10235983 None:intergenic 45.0%
CCAAGCATGATCAAATGGAC+TGG - chr1_4:10235961-10235980 Msa0149440:intron 45.0%
!! AGCATGATCAAATGGACTGG+TGG - chr1_4:10235964-10235983 Msa0149440:intron 45.0%
TGATCAGAGGCAGAAGTCTA+TGG - chr1_4:10236400-10236419 Msa0149440:intron 45.0%
GATCAGAGGCAGAAGTCTAT+GGG - chr1_4:10236401-10236420 Msa0149440:intron 45.0%
AGAAAGCTGCGCTATGATTC+GGG - chr1_4:10236622-10236641 Msa0149440:CDS 45.0%
!!! TATGATTCGGGGGGCTTTTT+TGG - chr1_4:10236634-10236653 Msa0149440:CDS 45.0%
CACTCCCAAACAACAGTTTG+GGG - chr1_4:10236753-10236772 Msa0149440:CDS 45.0%
! GACACCCCAAACTGTTGTTT+GGG + chr1_4:10236760-10236779 None:intergenic 45.0%
AGACACCCCAAACTGTTGTT+TGG + chr1_4:10236761-10236780 None:intergenic 45.0%
TTCCCCATCGAATCAAACTC+TGG - chr1_4:10236890-10236909 Msa0149440:CDS 45.0%
!!! TTTACTTTATTTAAAATATT+GGG - chr1_4:10234312-10234331 Msa0149440:intron 5.0%
GGATCGAAGGTGGAAGAGAA+CGG + chr1_4:10233953-10233972 None:intergenic 50.0%
! CGACAATGATTCGGCTGAGA+AGG - chr1_4:10234039-10234058 Msa0149440:three_prime_UTR 50.0%
! CAATGATTCGGCTGAGAAGG+TGG - chr1_4:10234042-10234061 Msa0149440:three_prime_UTR 50.0%
CTTTACCTTCACAGCGCGAA+CGG + chr1_4:10234077-10234096 None:intergenic 50.0%
! CTTAGCTTTCTCGGCAGCAA+CGG + chr1_4:10234110-10234129 None:intergenic 50.0%
!! GAAGGCGAAGGTTGATAAGG+CGG - chr1_4:10234144-10234163 Msa0149440:three_prime_UTR 50.0%
GATGGAGAAAGTGGCTTAGC+AGG - chr1_4:10234232-10234251 Msa0149440:intron 50.0%
AAACCCACACACACGCAAGT+CGG + chr1_4:10234597-10234616 None:intergenic 50.0%
CTCCCTGTCAGTCCAAACTA+TGG - chr1_4:10234986-10235005 Msa0149440:intron 50.0%
CCCTGAATTCCCCCAAGATA+TGG + chr1_4:10235020-10235039 None:intergenic 50.0%
CGTTCCTTCTGTCTTTAGCC+TGG - chr1_4:10235618-10235637 Msa0149440:intron 50.0%
GAACCTGAGAGCAGCAAACT+TGG - chr1_4:10236032-10236051 Msa0149440:intron 50.0%
!! TCACCAAGTTTGCTGCTCTC+AGG + chr1_4:10236038-10236057 None:intergenic 50.0%
TCAACAGTCTGTCGAGTCTC+AGG + chr1_4:10236068-10236087 None:intergenic 50.0%
TGAGGATTTCTCCCGGTAGT+TGG - chr1_4:10236346-10236365 Msa0149440:intron 50.0%
TATGGGCCTTCCAACAAGTG+AGG - chr1_4:10236418-10236437 Msa0149440:intron 50.0%
!! TTCTGGAGCTCCTCACTTGT+TGG + chr1_4:10236431-10236450 None:intergenic 50.0%
AAGTGAGGAGCTCCAGAAAC+AGG - chr1_4:10236433-10236452 Msa0149440:intron 50.0%
TGTATTGCAGCATCCGGAGA+TGG - chr1_4:10236575-10236594 Msa0149440:CDS 50.0%
GCATTCGAGAAGTCCATCTC+CGG + chr1_4:10236591-10236610 None:intergenic 50.0%
GAAAGCTGCGCTATGATTCG+GGG - chr1_4:10236623-10236642 Msa0149440:CDS 50.0%
! AAAGCTGCGCTATGATTCGG+GGG - chr1_4:10236624-10236643 Msa0149440:CDS 50.0%
TGCTGCTGAAGAGAAGGCGA+AGG - chr1_4:10234132-10234151 Msa0149440:three_prime_UTR 55.0%
TGCGGCGGAGAAGAAAGCTA+TGG - chr1_4:10234180-10234199 Msa0149440:CDS 55.0%
GGCGGAGAAGAAAGCTATGG+AGG - chr1_4:10234183-10234202 Msa0149440:CDS 55.0%
AACCCACACACACGCAAGTC+GGG + chr1_4:10234596-10234615 None:intergenic 55.0%
CTTGCGTGTGTGTGGGTTTC+CGG - chr1_4:10234598-10234617 Msa0149440:intron 55.0%
! GAGCAGCAAACTTGGTGACC+TGG - chr1_4:10236040-10236059 Msa0149440:intron 55.0%
TCTGTCGAGTCTCAGGATCC+AGG + chr1_4:10236061-10236080 None:intergenic 55.0%
! GGAGCTCCTCACTTGTTGGA+AGG + chr1_4:10236427-10236446 None:intergenic 55.0%
! AAGCTGCGCTATGATTCGGG+GGG - chr1_4:10236625-10236644 Msa0149440:CDS 55.0%
TACCTTCACAGCGCGAACGG+CGG + chr1_4:10234074-10234093 None:intergenic 60.0%
!! GGCGAAGGTTGATAAGGCGG+CGG - chr1_4:10234147-10234166 Msa0149440:three_prime_UTR 60.0%
! AACCCCGACTTGCGTGTGTG+TGG - chr1_4:10234590-10234609 Msa0149440:intron 60.0%
! ACCCCGACTTGCGTGTGTGT+GGG - chr1_4:10234591-10234610 Msa0149440:intron 60.0%
ACCCACACACACGCAAGTCG+GGG + chr1_4:10234595-10234614 None:intergenic 60.0%
ATCCGCCGTTCGCGCTGTGA+AGG - chr1_4:10234069-10234088 Msa0149440:three_prime_UTR 65.0%
GGCGGCGGCTGCTGTTGCTG+CGG - chr1_4:10234162-10234181 Msa0149440:exon 75.0%
GGCGGCTGCTGTTGCTGCGG+CGG - chr1_4:10234165-10234184 Msa0149440:exon 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10233801 10236997 10233801 ID=Msa0149440;Name=Msa0149440
chr1_4 mRNA 10233801 10236997 10233801 ID=Msa0149440-mRNA-1;Parent=Msa0149440;Name=Msa0149440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=71|1|1|1|1|1|6|374|297
chr1_4 exon 10233801 10234213 10233801 ID=Msa0149440-mRNA-1:exon:4329;Parent=Msa0149440-mRNA-1
chr1_4 exon 10234317 10234400 10234317 ID=Msa0149440-mRNA-1:exon:4328;Parent=Msa0149440-mRNA-1
chr1_4 exon 10234701 10234867 10234701 ID=Msa0149440-mRNA-1:exon:4327;Parent=Msa0149440-mRNA-1
chr1_4 exon 10235045 10235093 10235045 ID=Msa0149440-mRNA-1:exon:4326;Parent=Msa0149440-mRNA-1
chr1_4 exon 10235272 10235444 10235272 ID=Msa0149440-mRNA-1:exon:4325;Parent=Msa0149440-mRNA-1
chr1_4 exon 10236545 10236997 10236545 ID=Msa0149440-mRNA-1:exon:4324;Parent=Msa0149440-mRNA-1
chr1_4 five_prime_UTR 10236927 10236997 10236927 ID=Msa0149440-mRNA-1:five_prime_utr;Parent=Msa0149440-mRNA-1
chr1_4 CDS 10236545 10236926 10236545 ID=Msa0149440-mRNA-1:cds;Parent=Msa0149440-mRNA-1
chr1_4 CDS 10235272 10235444 10235272 ID=Msa0149440-mRNA-1:cds;Parent=Msa0149440-mRNA-1
chr1_4 CDS 10235045 10235093 10235045 ID=Msa0149440-mRNA-1:cds;Parent=Msa0149440-mRNA-1
chr1_4 CDS 10234701 10234867 10234701 ID=Msa0149440-mRNA-1:cds;Parent=Msa0149440-mRNA-1
chr1_4 CDS 10234317 10234400 10234317 ID=Msa0149440-mRNA-1:cds;Parent=Msa0149440-mRNA-1
chr1_4 CDS 10234175 10234213 10234175 ID=Msa0149440-mRNA-1:cds;Parent=Msa0149440-mRNA-1
chr1_4 three_prime_UTR 10233801 10234174 10233801 ID=Msa0149440-mRNA-1:three_prime_utr;Parent=Msa0149440-mRNA-1
Gene Sequence

>Msa0149440

ATGGCGATTATCTCCGATTACCAAGAAGAAACCCAAACCTCTTCATCTTCTTCTCAAACAAAACCCTCAAAACCTATTCCGTTCTCTTCCACCTTCGATCCTTCAAATCCAACCGCTTTTCTCGAAAATGTATTCGACTTCATCGCTAAGGAAAGTACCGATTTCTTCGACAATGATTCGGCTGAGAAGGTGGTTTTATCCGCCGTTCGCGCTGTGAAGGTAAAGAAAGCTAAGGCCGTTGCTGCCGAGAAAGCTAAGATTGCTGCTGAAGAGAAGGCGAAGGTTGATAAGGCGGCGGCTGCTGTTGCTGCGGCGGAGAAGAAAGCTATGGAGGTAGATGAGAAGGAAGATGAGAAGAAGGATGGAGAAAGTGGCTTAGCAGTTCCCAATCAGGGTAATGGTATGGATCTGGAGAAATATTCTTGGACTCAAACTCTTCAAGAGCTCAATGTGAATGTTCCAGTGCCAAATGGAACAAAATCAAGGTTTGTCACATGTGAGATAAAGAAGAACCATCTAAAAGTTGGAATCAAAGGGCAGCCACCAATTATTGATGGGGAGCTGTATAAATCTATCAAGCCTGATGAATGTTACTGGAGCATAGAGGATCAGAGTACACTTTCTATTCTTTTAACCAAGCATGATCAAATGGACTGGTGGAAATGTCTTGTTAAGGGTGATCCTGAAATTAACACCCAAAAAGTTGAACCTGAGAGCAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAGATGATGTTTGATCAGAGGCAGAAGTCTATGGGCCTTCCAACAAGTGAGGAGCTCCAGAAACAGGAAATCATGAAGAAATTTATGAGTCAGCATCCGGAGATGGACTTCTCGAATGCAAAATTATCTTAG

Protein sequence

>Msa0149440

MAIISDYQEETQTSSSSSQTKPSKPIPFSSTFDPSNPTAFLENVFDFIAKESTDFFDNDSAEKVVLSAVRAVKVKKAKAVAAEKAKIAAEEKAKVDKAAAAVAAAEKKAMEVDEKEDEKKDGESGLAVPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSRFVTCEIKKNHLKVGIKGQPPIIDGELYKSIKPDECYWSIEDQSTLSILLTKHDQMDWWKCLVKGDPEINTQKVEPESSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEIMKKFMSQHPEMDFSNAKLS*