Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058720 | XP_014489716.1 | 51.456 | 103 | 21 | 1 | 3 | 76 | 148 | 250 | 3.10e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058720 | A0A1S3T7H8 | 51.456 | 103 | 21 | 1 | 3 | 76 | 148 | 250 | 1.48e-20 | 92.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1034150 | Msa1058720 | 0.801719 | 7.886276e-49 | -8.615850e-47 |
| Msa1058720 | Msa1174040 | 0.804629 | 1.970707e-49 | -8.615850e-47 |
| Msa1058720 | Msa1397120 | 0.801736 | 7.822466e-49 | -8.615850e-47 |
| Msa1058720 | Msa1403890 | 0.801546 | 8.556700e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058720 | MtrunA17_Chr7g0257041 | 41.447 | 152 | 11 | 2 | 3 | 76 | 150 | 301 | 9.63e-22 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTAGTCCAAAAGCATTT+AGG | 0.188378 | 7_2:-43819516 | Msa1058720:CDS |
| CCACATCCCCTAAATGCTTT+TGG | 0.276786 | 7_2:+43819508 | None:intergenic |
| ATTTAGTCCAAAAGCATTTA+GGG | 0.302968 | 7_2:-43819515 | Msa1058720:CDS |
| CCAAAAGCATTTAGGGGATG+TGG | 0.478987 | 7_2:-43819508 | Msa1058720:CDS |
| ATTGATCAAAACTGAAGATA+AGG | 0.483534 | 7_2:-43819407 | None:intergenic |
| TCTCGGAGCGTTTCCACCAC+AGG | 0.526097 | 7_2:+43819468 | None:intergenic |
| AGTGCATTAAACCTTTCACT+AGG | 0.535386 | 7_2:-43820441 | Msa1058720:CDS |
| ATGGAAGCGGTCACCTGTGG+TGG | 0.556018 | 7_2:-43819481 | Msa1058720:CDS |
| CCCATTGACTCCCTAGTGAA+AGG | 0.565019 | 7_2:+43820430 | None:intergenic |
| ATTTAGGGGATGTGGACCTA+TGG | 0.569229 | 7_2:-43819500 | Msa1058720:CDS |
| AGAACAGCTGCATAGAATCT+CGG | 0.579898 | 7_2:+43819451 | None:intergenic |
| GTGCATTAAACCTTTCACTA+GGG | 0.606591 | 7_2:-43820440 | Msa1058720:CDS |
| TTTAGTCCAAAAGCATTTAG+GGG | 0.630242 | 7_2:-43819514 | Msa1058720:CDS |
| GGGATGTGGACCTATGGAAG+CGG | 0.634079 | 7_2:-43819494 | Msa1058720:CDS |
| ATTATACCTGTAGCAATGAG+AGG | 0.634423 | 7_2:-43821137 | None:intergenic |
| CCTATGGAAGCGGTCACCTG+TGG | 0.654345 | 7_2:-43819484 | Msa1058720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAGTTAATCAAATAATT+TGG | - | chr7_2:43819671-43819690 | Msa1058720:intron | 15.0% |
| !! | TAATCAAATAATTTGGTTAT+AGG | - | chr7_2:43819678-43819697 | Msa1058720:intron | 15.0% |
| !! | ACAAACTTTATTCAATTATT+AGG | + | chr7_2:43819905-43819924 | None:intergenic | 15.0% |
| !! | ATAGAATTTATTAAATTGAC+AGG | + | chr7_2:43820028-43820047 | None:intergenic | 15.0% |
| !!! | ATAAATTCTATTCTTTCTTT+TGG | - | chr7_2:43820037-43820056 | Msa1058720:intron | 15.0% |
| !! | AAAAAACTAATCTAAAAAGT+TGG | + | chr7_2:43820405-43820424 | None:intergenic | 15.0% |
| !!! | GTATTGTTTTAAATTGTTTT+TGG | - | chr7_2:43820441-43820460 | Msa1058720:CDS | 15.0% |
| !! | TTCTTAATTGTATTTAAAGA+AGG | - | chr7_2:43820599-43820618 | Msa1058720:intron | 15.0% |
| !!! | CATTGTATCTTAAAATATTT+TGG | + | chr7_2:43820676-43820695 | None:intergenic | 15.0% |
| !! | TACAAGTTAATCAAATAATT+TGG | - | chr7_2:43819671-43819690 | Msa1058720:intron | 15.0% |
| !! | TAATCAAATAATTTGGTTAT+AGG | - | chr7_2:43819678-43819697 | Msa1058720:intron | 15.0% |
| !! | ACAAACTTTATTCAATTATT+AGG | + | chr7_2:43819905-43819924 | None:intergenic | 15.0% |
| !! | ATAGAATTTATTAAATTGAC+AGG | + | chr7_2:43820028-43820047 | None:intergenic | 15.0% |
| !!! | ATAAATTCTATTCTTTCTTT+TGG | - | chr7_2:43820037-43820056 | Msa1058720:intron | 15.0% |
| !! | AAAAAACTAATCTAAAAAGT+TGG | + | chr7_2:43820405-43820424 | None:intergenic | 15.0% |
| !!! | GTATTGTTTTAAATTGTTTT+TGG | - | chr7_2:43820441-43820460 | Msa1058720:CDS | 15.0% |
| !! | TTCTTAATTGTATTTAAAGA+AGG | - | chr7_2:43820599-43820618 | Msa1058720:intron | 15.0% |
| !!! | CATTGTATCTTAAAATATTT+TGG | + | chr7_2:43820676-43820695 | None:intergenic | 15.0% |
| !!! | AATCTTATTAGTTTTTAACC+TGG | + | chr7_2:43819581-43819600 | None:intergenic | 20.0% |
| !! | CTAATAAGATTTCCATAATT+TGG | - | chr7_2:43819590-43819609 | Msa1058720:intron | 20.0% |
| !! | GAGAAATTTAACAAAAACAT+TGG | + | chr7_2:43820287-43820306 | None:intergenic | 20.0% |
| !!! | TACTCCTATAATATCATTTT+AGG | - | chr7_2:43820646-43820665 | Msa1058720:intron | 20.0% |
| !! | AGTTCCTAAAATGATATTAT+AGG | + | chr7_2:43820653-43820672 | None:intergenic | 20.0% |
| !!! | ATTTGTAGTTTTTGTTATTC+AGG | - | chr7_2:43820880-43820899 | Msa1058720:intron | 20.0% |
| !! | ATGATAAATCTATGATTCAT+TGG | + | chr7_2:43820967-43820986 | None:intergenic | 20.0% |
| !!! | AATCTTATTAGTTTTTAACC+TGG | + | chr7_2:43819581-43819600 | None:intergenic | 20.0% |
| !! | CTAATAAGATTTCCATAATT+TGG | - | chr7_2:43819590-43819609 | Msa1058720:intron | 20.0% |
| !! | GAGAAATTTAACAAAAACAT+TGG | + | chr7_2:43820287-43820306 | None:intergenic | 20.0% |
| !!! | TACTCCTATAATATCATTTT+AGG | - | chr7_2:43820646-43820665 | Msa1058720:intron | 20.0% |
| !! | AGTTCCTAAAATGATATTAT+AGG | + | chr7_2:43820653-43820672 | None:intergenic | 20.0% |
| !!! | ATTTGTAGTTTTTGTTATTC+AGG | - | chr7_2:43820880-43820899 | Msa1058720:intron | 20.0% |
| !! | ATGATAAATCTATGATTCAT+TGG | + | chr7_2:43820967-43820986 | None:intergenic | 20.0% |
| ! | AAATTCCAGCATTAATTTAC+TGG | + | chr7_2:43819456-43819475 | None:intergenic | 25.0% |
| ! | ATGTATGGAAAATGAAAAAC+AGG | - | chr7_2:43819721-43819740 | Msa1058720:intron | 25.0% |
| !!! | AGACTTTTCTTTTGAGTTTT+AGG | - | chr7_2:43819879-43819898 | Msa1058720:intron | 25.0% |
| ! | AAAATGAAAGTGACTAAATG+CGG | + | chr7_2:43820248-43820267 | None:intergenic | 25.0% |
| ! | TAAAAAGTTGGATGAAACTT+TGG | + | chr7_2:43820393-43820412 | None:intergenic | 25.0% |
| !! | GTCCTTTTTGTTAATATGTA+GGG | - | chr7_2:43820463-43820482 | Msa1058720:CDS | 25.0% |
| ! | AACCCTACATATTAACAAAA+AGG | + | chr7_2:43820468-43820487 | None:intergenic | 25.0% |
| ! | TATTAACTGTTAAAATACCC+TGG | + | chr7_2:43820721-43820740 | None:intergenic | 25.0% |
| !!! | ATTTAGTCCAAAAGCATTTA+GGG | - | chr7_2:43821015-43821034 | Msa1058720:intron | 25.0% |
| ! | AAATTCCAGCATTAATTTAC+TGG | + | chr7_2:43819456-43819475 | None:intergenic | 25.0% |
| ! | ATGTATGGAAAATGAAAAAC+AGG | - | chr7_2:43819721-43819740 | Msa1058720:intron | 25.0% |
| !!! | AGACTTTTCTTTTGAGTTTT+AGG | - | chr7_2:43819879-43819898 | Msa1058720:intron | 25.0% |
| ! | AAAATGAAAGTGACTAAATG+CGG | + | chr7_2:43820248-43820267 | None:intergenic | 25.0% |
| ! | TAAAAAGTTGGATGAAACTT+TGG | + | chr7_2:43820393-43820412 | None:intergenic | 25.0% |
| !! | GTCCTTTTTGTTAATATGTA+GGG | - | chr7_2:43820463-43820482 | Msa1058720:CDS | 25.0% |
| ! | AACCCTACATATTAACAAAA+AGG | + | chr7_2:43820468-43820487 | None:intergenic | 25.0% |
| ! | TATTAACTGTTAAAATACCC+TGG | + | chr7_2:43820721-43820740 | None:intergenic | 25.0% |
| !!! | ATTTAGTCCAAAAGCATTTA+GGG | - | chr7_2:43821015-43821034 | Msa1058720:intron | 25.0% |
| GCATTAATTTACTGGATCAT+CGG | + | chr7_2:43819448-43819467 | None:intergenic | 30.0% | |
| ATGATCCAGTAAATTAATGC+TGG | - | chr7_2:43819448-43819467 | Msa1058720:CDS | 30.0% | |
| TTAAGGAACAAAGATGATCA+AGG | + | chr7_2:43819544-43819563 | None:intergenic | 30.0% | |
| !!! | CTTATTAGTTTTTAACCTGG+TGG | + | chr7_2:43819578-43819597 | None:intergenic | 30.0% |
| GATTTCCATAATTTGGAAGT+AGG | - | chr7_2:43819597-43819616 | Msa1058720:intron | 30.0% | |
| CGAAAATACTAAGCAATAAG+AGG | - | chr7_2:43819629-43819648 | Msa1058720:intron | 30.0% | |
| CATACATGACAAGAATTTCT+TGG | + | chr7_2:43819708-43819727 | None:intergenic | 30.0% | |
| CAAGAAATTCTTGTCATGTA+TGG | - | chr7_2:43819706-43819725 | Msa1058720:intron | 30.0% | |
| GAAACTAATCTACTTCCAAA+TGG | + | chr7_2:43819765-43819784 | None:intergenic | 30.0% | |
| !! | AGTAGATTAGTTTCTTGAGA+AGG | - | chr7_2:43819771-43819790 | Msa1058720:intron | 30.0% |
| AGTTTGTGTAAACTACTTGT+CGG | - | chr7_2:43819918-43819937 | Msa1058720:intron | 30.0% | |
| ! | ATTCTATTCTTTCTTTTGGC+AGG | - | chr7_2:43820041-43820060 | Msa1058720:intron | 30.0% |
| ! | CACAAATTTTCAGCATAATC+GGG | + | chr7_2:43820157-43820176 | None:intergenic | 30.0% |
| ! | CCACAAATTTTCAGCATAAT+CGG | + | chr7_2:43820158-43820177 | None:intergenic | 30.0% |
| ACTTGTGAGAGTCTATAATA+TGG | - | chr7_2:43820339-43820358 | Msa1058720:intron | 30.0% | |
| ! | GGTCCTTTTTGTTAATATGT+AGG | - | chr7_2:43820462-43820481 | Msa1058720:CDS | 30.0% |
| ! | TAATATGTAGGGTTTTCGTA+TGG | - | chr7_2:43820474-43820493 | Msa1058720:intron | 30.0% |
| AGGAAATACCTCATGAAATA+CGG | - | chr7_2:43820619-43820638 | Msa1058720:intron | 30.0% | |
| AGTAATTTCCGTATTTCATG+AGG | + | chr7_2:43820630-43820649 | None:intergenic | 30.0% | |
| ACTACAAATTCAAGAAGTTC+AGG | + | chr7_2:43820869-43820888 | None:intergenic | 30.0% | |
| !! | GATTTAGTCCAAAAGCATTT+AGG | - | chr7_2:43821014-43821033 | Msa1058720:intron | 30.0% |
| !! | TTTAGTCCAAAAGCATTTAG+GGG | - | chr7_2:43821016-43821035 | Msa1058720:intron | 30.0% |
| GCATTAATTTACTGGATCAT+CGG | + | chr7_2:43819448-43819467 | None:intergenic | 30.0% | |
| ATGATCCAGTAAATTAATGC+TGG | - | chr7_2:43819448-43819467 | Msa1058720:CDS | 30.0% | |
| TTAAGGAACAAAGATGATCA+AGG | + | chr7_2:43819544-43819563 | None:intergenic | 30.0% | |
| !!! | CTTATTAGTTTTTAACCTGG+TGG | + | chr7_2:43819578-43819597 | None:intergenic | 30.0% |
| GATTTCCATAATTTGGAAGT+AGG | - | chr7_2:43819597-43819616 | Msa1058720:intron | 30.0% | |
| CGAAAATACTAAGCAATAAG+AGG | - | chr7_2:43819629-43819648 | Msa1058720:intron | 30.0% | |
| CATACATGACAAGAATTTCT+TGG | + | chr7_2:43819708-43819727 | None:intergenic | 30.0% | |
| CAAGAAATTCTTGTCATGTA+TGG | - | chr7_2:43819706-43819725 | Msa1058720:intron | 30.0% | |
| GAAACTAATCTACTTCCAAA+TGG | + | chr7_2:43819765-43819784 | None:intergenic | 30.0% | |
| !! | AGTAGATTAGTTTCTTGAGA+AGG | - | chr7_2:43819771-43819790 | Msa1058720:intron | 30.0% |
| AGTTTGTGTAAACTACTTGT+CGG | - | chr7_2:43819918-43819937 | Msa1058720:intron | 30.0% | |
| ! | ATTCTATTCTTTCTTTTGGC+AGG | - | chr7_2:43820041-43820060 | Msa1058720:intron | 30.0% |
| ! | CACAAATTTTCAGCATAATC+GGG | + | chr7_2:43820157-43820176 | None:intergenic | 30.0% |
| ! | CCACAAATTTTCAGCATAAT+CGG | + | chr7_2:43820158-43820177 | None:intergenic | 30.0% |
| ACTTGTGAGAGTCTATAATA+TGG | - | chr7_2:43820339-43820358 | Msa1058720:intron | 30.0% | |
| ! | GGTCCTTTTTGTTAATATGT+AGG | - | chr7_2:43820462-43820481 | Msa1058720:CDS | 30.0% |
| ! | TAATATGTAGGGTTTTCGTA+TGG | - | chr7_2:43820474-43820493 | Msa1058720:intron | 30.0% |
| AGGAAATACCTCATGAAATA+CGG | - | chr7_2:43820619-43820638 | Msa1058720:intron | 30.0% | |
| AGTAATTTCCGTATTTCATG+AGG | + | chr7_2:43820630-43820649 | None:intergenic | 30.0% | |
| ACTACAAATTCAAGAAGTTC+AGG | + | chr7_2:43820869-43820888 | None:intergenic | 30.0% | |
| !! | GATTTAGTCCAAAAGCATTT+AGG | - | chr7_2:43821014-43821033 | Msa1058720:intron | 30.0% |
| !! | TTTAGTCCAAAAGCATTTAG+GGG | - | chr7_2:43821016-43821035 | Msa1058720:intron | 30.0% |
| TAATTTACTGGATCATCGGT+TGG | + | chr7_2:43819444-43819463 | None:intergenic | 35.0% | |
| GCTAACCTACTTCCAAATTA+TGG | + | chr7_2:43819605-43819624 | None:intergenic | 35.0% | |
| ACTAATCTACTTCCAAATGG+TGG | + | chr7_2:43819762-43819781 | None:intergenic | 35.0% | |
| CAATCATCTTAATGCGCTAT+GGG | + | chr7_2:43819851-43819870 | None:intergenic | 35.0% | |
| ACAATCATCTTAATGCGCTA+TGG | + | chr7_2:43819852-43819871 | None:intergenic | 35.0% | |
| TGCTCAGTATTCTTAAGTCT+TGG | - | chr7_2:43819953-43819972 | Msa1058720:intron | 35.0% | |
| AGTGCATTAAACCTTTCACT+AGG | - | chr7_2:43820089-43820108 | Msa1058720:intron | 35.0% | |
| GTGCATTAAACCTTTCACTA+GGG | - | chr7_2:43820090-43820109 | Msa1058720:intron | 35.0% | |
| ! | ATTTGAGATGAGAAGGTTCT+TGG | + | chr7_2:43820134-43820153 | None:intergenic | 35.0% |
| CCGATTATGCTGAAAATTTG+TGG | - | chr7_2:43820155-43820174 | Msa1058720:intron | 35.0% | |
| CTGAAAATTTGTGGAGCATA+TGG | - | chr7_2:43820164-43820183 | Msa1058720:intron | 35.0% | |
| ! | TAAGATGATTTTGCGATTCC+AGG | - | chr7_2:43820774-43820793 | Msa1058720:intron | 35.0% |
| ! | CAGGATAATGAATTTTCCGT+AGG | + | chr7_2:43820844-43820863 | None:intergenic | 35.0% |
| CAATACTGTCTCTAGTATAC+AGG | - | chr7_2:43820988-43821007 | Msa1058720:intron | 35.0% | |
| TAATTTACTGGATCATCGGT+TGG | + | chr7_2:43819444-43819463 | None:intergenic | 35.0% | |
| GCTAACCTACTTCCAAATTA+TGG | + | chr7_2:43819605-43819624 | None:intergenic | 35.0% | |
| ACTAATCTACTTCCAAATGG+TGG | + | chr7_2:43819762-43819781 | None:intergenic | 35.0% | |
| CAATCATCTTAATGCGCTAT+GGG | + | chr7_2:43819851-43819870 | None:intergenic | 35.0% | |
| ACAATCATCTTAATGCGCTA+TGG | + | chr7_2:43819852-43819871 | None:intergenic | 35.0% | |
| TGCTCAGTATTCTTAAGTCT+TGG | - | chr7_2:43819953-43819972 | Msa1058720:intron | 35.0% | |
| AGTGCATTAAACCTTTCACT+AGG | - | chr7_2:43820089-43820108 | Msa1058720:intron | 35.0% | |
| GTGCATTAAACCTTTCACTA+GGG | - | chr7_2:43820090-43820109 | Msa1058720:intron | 35.0% | |
| ! | ATTTGAGATGAGAAGGTTCT+TGG | + | chr7_2:43820134-43820153 | None:intergenic | 35.0% |
| CCGATTATGCTGAAAATTTG+TGG | - | chr7_2:43820155-43820174 | Msa1058720:intron | 35.0% | |
| CTGAAAATTTGTGGAGCATA+TGG | - | chr7_2:43820164-43820183 | Msa1058720:intron | 35.0% | |
| ! | TAAGATGATTTTGCGATTCC+AGG | - | chr7_2:43820774-43820793 | Msa1058720:intron | 35.0% |
| ! | CAGGATAATGAATTTTCCGT+AGG | + | chr7_2:43820844-43820863 | None:intergenic | 35.0% |
| CAATACTGTCTCTAGTATAC+AGG | - | chr7_2:43820988-43821007 | Msa1058720:intron | 35.0% | |
| TGGTGGCACTATATGCATTA+AGG | + | chr7_2:43819561-43819580 | None:intergenic | 40.0% | |
| TTAATGCATATAGTGCCACC+AGG | - | chr7_2:43819560-43819579 | Msa1058720:intron | 40.0% | |
| TTGTAAGCATCTCCACCATT+TGG | - | chr7_2:43819747-43819766 | Msa1058720:intron | 40.0% | |
| AACATTCTCCAACAGACATG+GGG | + | chr7_2:43819986-43820005 | None:intergenic | 40.0% | |
| CAACATTCTCCAACAGACAT+GGG | + | chr7_2:43819987-43820006 | None:intergenic | 40.0% | |
| ! | AATCGGGATTTGAGATGAGA+AGG | + | chr7_2:43820141-43820160 | None:intergenic | 40.0% |
| !! | ACTTTGGAACTGCTACAGTT+GGG | + | chr7_2:43820377-43820396 | None:intergenic | 40.0% |
| !! | AACTTTGGAACTGCTACAGT+TGG | + | chr7_2:43820378-43820397 | None:intergenic | 40.0% |
| TAATTGACCGAGTTCGCATT+TGG | + | chr7_2:43820815-43820834 | None:intergenic | 40.0% | |
| CGGTCAATTAGAAGTTCCTA+CGG | - | chr7_2:43820825-43820844 | Msa1058720:intron | 40.0% | |
| AATTCAAGAAGTTCAGGAGC+AGG | + | chr7_2:43820863-43820882 | None:intergenic | 40.0% | |
| AGAACAGCTGCATAGAATCT+CGG | + | chr7_2:43821082-43821101 | None:intergenic | 40.0% | |
| TGGTGGCACTATATGCATTA+AGG | + | chr7_2:43819561-43819580 | None:intergenic | 40.0% | |
| TTAATGCATATAGTGCCACC+AGG | - | chr7_2:43819560-43819579 | Msa1058720:intron | 40.0% | |
| TTGTAAGCATCTCCACCATT+TGG | - | chr7_2:43819747-43819766 | Msa1058720:intron | 40.0% | |
| AACATTCTCCAACAGACATG+GGG | + | chr7_2:43819986-43820005 | None:intergenic | 40.0% | |
| CAACATTCTCCAACAGACAT+GGG | + | chr7_2:43819987-43820006 | None:intergenic | 40.0% | |
| ! | AATCGGGATTTGAGATGAGA+AGG | + | chr7_2:43820141-43820160 | None:intergenic | 40.0% |
| !! | ACTTTGGAACTGCTACAGTT+GGG | + | chr7_2:43820377-43820396 | None:intergenic | 40.0% |
| !! | AACTTTGGAACTGCTACAGT+TGG | + | chr7_2:43820378-43820397 | None:intergenic | 40.0% |
| TAATTGACCGAGTTCGCATT+TGG | + | chr7_2:43820815-43820834 | None:intergenic | 40.0% | |
| CGGTCAATTAGAAGTTCCTA+CGG | - | chr7_2:43820825-43820844 | Msa1058720:intron | 40.0% | |
| AATTCAAGAAGTTCAGGAGC+AGG | + | chr7_2:43820863-43820882 | None:intergenic | 40.0% | |
| AGAACAGCTGCATAGAATCT+CGG | + | chr7_2:43821082-43821101 | None:intergenic | 40.0% | |
| TCCAACAGACATGGGGAAAA+AGG | + | chr7_2:43819979-43819998 | None:intergenic | 45.0% | |
| GCAACATTCTCCAACAGACA+TGG | + | chr7_2:43819988-43820007 | None:intergenic | 45.0% | |
| ACCTTTCACTAGGGAGTCAA+TGG | - | chr7_2:43820099-43820118 | Msa1058720:intron | 45.0% | |
| CCTTTCACTAGGGAGTCAAT+GGG | - | chr7_2:43820100-43820119 | Msa1058720:intron | 45.0% | |
| TGTGACATATTTCCAGCTCC+AGG | - | chr7_2:43820700-43820719 | Msa1058720:intron | 45.0% | |
| GTGACATATTTCCAGCTCCA+GGG | - | chr7_2:43820701-43820720 | Msa1058720:intron | 45.0% | |
| CTGTTAAAATACCCTGGAGC+TGG | + | chr7_2:43820715-43820734 | None:intergenic | 45.0% | |
| ATCGTCTCCAAATGCGAACT+CGG | - | chr7_2:43820805-43820824 | Msa1058720:intron | 45.0% | |
| ! | CCACATCCCCTAAATGCTTT+TGG | + | chr7_2:43821025-43821044 | None:intergenic | 45.0% |
| !! | CCAAAAGCATTTAGGGGATG+TGG | - | chr7_2:43821022-43821041 | Msa1058720:intron | 45.0% |
| ATTTAGGGGATGTGGACCTA+TGG | - | chr7_2:43821030-43821049 | Msa1058720:intron | 45.0% | |
| TCCAACAGACATGGGGAAAA+AGG | + | chr7_2:43819979-43819998 | None:intergenic | 45.0% | |
| GCAACATTCTCCAACAGACA+TGG | + | chr7_2:43819988-43820007 | None:intergenic | 45.0% | |
| ACCTTTCACTAGGGAGTCAA+TGG | - | chr7_2:43820099-43820118 | Msa1058720:intron | 45.0% | |
| CCTTTCACTAGGGAGTCAAT+GGG | - | chr7_2:43820100-43820119 | Msa1058720:intron | 45.0% | |
| TGTGACATATTTCCAGCTCC+AGG | - | chr7_2:43820700-43820719 | Msa1058720:intron | 45.0% | |
| GTGACATATTTCCAGCTCCA+GGG | - | chr7_2:43820701-43820720 | Msa1058720:intron | 45.0% | |
| CTGTTAAAATACCCTGGAGC+TGG | + | chr7_2:43820715-43820734 | None:intergenic | 45.0% | |
| ATCGTCTCCAAATGCGAACT+CGG | - | chr7_2:43820805-43820824 | Msa1058720:intron | 45.0% | |
| ! | CCACATCCCCTAAATGCTTT+TGG | + | chr7_2:43821025-43821044 | None:intergenic | 45.0% |
| !! | CCAAAAGCATTTAGGGGATG+TGG | - | chr7_2:43821022-43821041 | Msa1058720:intron | 45.0% |
| ATTTAGGGGATGTGGACCTA+TGG | - | chr7_2:43821030-43821049 | Msa1058720:intron | 45.0% | |
| ! | GCCTTTTTCCCCATGTCTGT+TGG | - | chr7_2:43819975-43819994 | Msa1058720:intron | 50.0% |
| !! | CCCATTGACTCCCTAGTGAA+AGG | + | chr7_2:43820103-43820122 | None:intergenic | 50.0% |
| TTGGAACTGCTACAGTTGGG+CGG | + | chr7_2:43820374-43820393 | None:intergenic | 50.0% | |
| TGGAGACGATAACAGCAACC+TGG | + | chr7_2:43820795-43820814 | None:intergenic | 50.0% | |
| ! | GCCTTTTTCCCCATGTCTGT+TGG | - | chr7_2:43819975-43819994 | Msa1058720:intron | 50.0% |
| !! | CCCATTGACTCCCTAGTGAA+AGG | + | chr7_2:43820103-43820122 | None:intergenic | 50.0% |
| TTGGAACTGCTACAGTTGGG+CGG | + | chr7_2:43820374-43820393 | None:intergenic | 50.0% | |
| TGGAGACGATAACAGCAACC+TGG | + | chr7_2:43820795-43820814 | None:intergenic | 50.0% | |
| TGGAACTGCTACAGTTGGGC+GGG | + | chr7_2:43820373-43820392 | None:intergenic | 55.0% | |
| GGGATGTGGACCTATGGAAG+CGG | - | chr7_2:43821036-43821055 | Msa1058720:intron | 55.0% | |
| TGGAACTGCTACAGTTGGGC+GGG | + | chr7_2:43820373-43820392 | None:intergenic | 55.0% | |
| GGGATGTGGACCTATGGAAG+CGG | - | chr7_2:43821036-43821055 | Msa1058720:intron | 55.0% | |
| GGAACTGCTACAGTTGGGCG+GGG | + | chr7_2:43820372-43820391 | None:intergenic | 60.0% | |
| CCACAGGTGACCGCTTCCAT+AGG | + | chr7_2:43821049-43821068 | None:intergenic | 60.0% | |
| CCTATGGAAGCGGTCACCTG+TGG | - | chr7_2:43821046-43821065 | Msa1058720:intron | 60.0% | |
| ATGGAAGCGGTCACCTGTGG+TGG | - | chr7_2:43821049-43821068 | Msa1058720:intron | 60.0% | |
| ! | TCTCGGAGCGTTTCCACCAC+AGG | + | chr7_2:43821065-43821084 | None:intergenic | 60.0% |
| GGAACTGCTACAGTTGGGCG+GGG | + | chr7_2:43820372-43820391 | None:intergenic | 60.0% | |
| CCACAGGTGACCGCTTCCAT+AGG | + | chr7_2:43821049-43821068 | None:intergenic | 60.0% | |
| CCTATGGAAGCGGTCACCTG+TGG | - | chr7_2:43821046-43821065 | Msa1058720:intron | 60.0% | |
| ATGGAAGCGGTCACCTGTGG+TGG | - | chr7_2:43821049-43821068 | Msa1058720:intron | 60.0% | |
| ! | TCTCGGAGCGTTTCCACCAC+AGG | + | chr7_2:43821065-43821084 | None:intergenic | 60.0% |
| GCTACAGTTGGGCGGGGAAC+AGG | + | chr7_2:43820366-43820385 | None:intergenic | 65.0% | |
| GCTACAGTTGGGCGGGGAAC+AGG | + | chr7_2:43820366-43820385 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 43819408 | 43821144 | 43819408 | ID=Msa1058720;Name=Msa1058720 |
| chr7_2 | mRNA | 43819408 | 43821144 | 43819408 | ID=Msa1058720-mRNA-1;Parent=Msa1058720;Name=Msa1058720-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.75|0.33|0.25|4|0|76 |
| chr7_2 | exon | 43821138 | 43821144 | 43821138 | ID=Msa1058720-mRNA-1:exon:7970;Parent=Msa1058720-mRNA-1 |
| chr7_2 | exon | 43820439 | 43820489 | 43820439 | ID=Msa1058720-mRNA-1:exon:7969;Parent=Msa1058720-mRNA-1 |
| chr7_2 | exon | 43820316 | 43820350 | 43820316 | ID=Msa1058720-mRNA-1:exon:7968;Parent=Msa1058720-mRNA-1 |
| chr7_2 | exon | 43819408 | 43819542 | 43819408 | ID=Msa1058720-mRNA-1:exon:7967;Parent=Msa1058720-mRNA-1 |
| chr7_2 | CDS | 43821138 | 43821144 | 43821138 | ID=Msa1058720-mRNA-1:cds;Parent=Msa1058720-mRNA-1 |
| chr7_2 | CDS | 43820439 | 43820489 | 43820439 | ID=Msa1058720-mRNA-1:cds;Parent=Msa1058720-mRNA-1 |
| chr7_2 | CDS | 43820316 | 43820350 | 43820316 | ID=Msa1058720-mRNA-1:cds;Parent=Msa1058720-mRNA-1 |
| chr7_2 | CDS | 43819408 | 43819542 | 43819408 | ID=Msa1058720-mRNA-1:cds;Parent=Msa1058720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
