AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174040 MtrunA17_Chr8g0337981 97.030 202 6 0 1 202 181 382 5.70e-146 410
Msa1174040 MtrunA17_Chr1g0150221 45.143 175 96 0 1 175 214 388 1.92e-47 160
Msa1174040 MtrunA17_Chr8g0334701 43.158 190 107 1 1 190 207 395 1.88e-46 157
Msa1174040 MtrunA17_Chr3g0095921 40.556 180 107 0 1 180 180 359 1.63e-45 154
Msa1174040 MtrunA17_Chr8g0390721 31.937 191 113 6 4 180 225 412 1.61e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174040 AT5G65940.1 58.416 202 81 2 1 202 180 378 4.23e-87 261
Msa1174040 AT5G65940.4 58.416 202 81 2 1 202 180 378 4.23e-87 261
Msa1174040 AT2G30650.1 58.706 201 81 2 1 200 176 375 2.42e-83 252
Msa1174040 AT2G30660.2 59.195 174 71 0 1 174 144 317 2.65e-75 230
Msa1174040 AT2G30660.1 59.195 174 71 0 1 174 176 349 5.00e-75 231
Msa1174040 AT5G65940.3 62.179 156 59 0 1 156 180 335 2.11e-73 225
Msa1174040 AT5G65940.2 59.060 149 61 0 1 149 180 328 2.05e-63 199
Msa1174040 AT2G30650.2 57.042 142 61 0 1 142 176 317 8.45e-55 177
Msa1174040 AT3G60510.1 46.597 191 101 1 1 191 208 397 9.45e-49 164
Msa1174040 AT1G06550.1 40.936 171 101 0 1 171 180 350 1.84e-45 155
Msa1174040 AT3G60510.3 41.204 216 101 2 1 191 208 422 2.72e-43 150
Msa1174040 AT4G31810.1 42.286 175 101 0 1 175 212 386 4.20e-41 144
Msa1174040 AT3G60510.2 46.729 107 57 0 1 107 208 314 1.08e-24 99.0
Msa1174040 AT4G13360.1 32.143 196 110 8 2 180 226 415 1.40e-18 83.2
Msa1174040 AT3G24360.3 30.256 195 115 8 2 180 119 308 4.27e-18 80.9
Msa1174040 AT3G24360.6 30.256 195 115 8 2 180 98 287 4.32e-18 80.5
Msa1174040 AT3G24360.5 30.256 195 115 8 2 180 121 310 5.17e-18 80.9
Msa1174040 AT3G24360.2 30.256 195 115 8 2 180 219 408 1.18e-17 80.5
Msa1174040 AT3G24360.1 30.256 195 115 8 2 180 223 412 1.30e-17 80.5

Find 53 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCTATTTCAAAGCTTTA+AGG 0.111501 8_1:+5082991 Msa1174040:CDS
AACTTAATGTTGTGATTCTT+TGG 0.213448 8_1:-5083052 None:intergenic
ATCCTTAACAAGCTCCAATT+TGG 0.248004 8_1:-5082881 None:intergenic
GGAGAATATGTTGGTCTTAC+AGG 0.259688 8_1:+5079884 Msa1174040:five_prime_UTR
AACATTTATCAAATTCAATA+AGG 0.286065 8_1:-5083266 None:intergenic
GTCAATAATTGCAGATACTA+TGG 0.328804 8_1:-5081652 None:intergenic
ATTAGACAAGGCAGGCTCTT+AGG 0.333895 8_1:+5082553 Msa1174040:CDS
CCTTGCTATGGTGTCCTTGT+AGG 0.349526 8_1:-5082621 None:intergenic
GGCAAGTTGTTGAACCTCTT+GGG 0.350616 8_1:-5082964 None:intergenic
TTAGTGGGATCCTTCCAAAT+TGG 0.352371 8_1:+5082867 Msa1174040:intron
AACATTAAGTTGATTCTTGA+AGG 0.366901 8_1:+5083064 Msa1174040:three_prime_UTR
TGCACAGAAATTATCGTCAT+TGG 0.403375 8_1:+5081593 Msa1174040:intron
TTCCAAATTGGAGCTTGTTA+AGG 0.403393 8_1:+5082879 Msa1174040:CDS
TGTCGGAGATGCTTTCTTCA+AGG 0.412605 8_1:-5082214 None:intergenic
TGCTGAAGGATGGAAAGATT+TGG 0.418826 8_1:+5082936 Msa1174040:CDS
AGGCAAGTTGTTGAACCTCT+TGG 0.459879 8_1:-5082965 None:intergenic
AGAGCAGCCTTCCCTAAAAC+AGG 0.460836 8_1:+5081683 Msa1174040:CDS
TTATATAAGATCAACTTGTT+CGG 0.495881 8_1:-5083113 None:intergenic
CCATAGCAAGGATTTCTTCG+AGG 0.511511 8_1:+5082633 Msa1174040:CDS
AGTATGTAGCATACCGATGA+AGG 0.512916 8_1:-5079962 None:intergenic
CTTACAGGTGCTAGGTTGGA+TGG 0.513409 8_1:+5079899 Msa1174040:five_prime_UTR
ATAATTGCAGATACTATGGC+TGG 0.526109 8_1:-5081648 None:intergenic
CTATGAGTAAAGCAGATAGT+TGG 0.533586 8_1:+5082172 Msa1174040:CDS
GTGGATGTTAATTTCACCAA+AGG 0.543624 8_1:-5083302 None:intergenic
CTATACTGATAGATAAAGAC+AGG 0.546864 8_1:+5082747 Msa1174040:CDS
CCTCGAAGAAATCCTTGCTA+TGG 0.552990 8_1:-5082633 None:intergenic
AACAGGATAGTGTTTATCAC+AGG 0.554120 8_1:+5081700 Msa1174040:CDS
TTAACAAGCTCCAATTTGGA+AGG 0.557519 8_1:-5082877 None:intergenic
CAATTCTATACTCGTAAACA+AGG 0.558815 8_1:-5082588 None:intergenic
TGGTCTTACAGGTGCTAGGT+TGG 0.559352 8_1:+5079895 Msa1174040:five_prime_UTR
TCATAATCAAAAGTATTCCA+TGG 0.561356 8_1:-5079768 None:intergenic
CAAATTGCAGGAGAATATGT+TGG 0.561540 8_1:+5079875 Msa1174040:five_prime_UTR
CAAGGCAGGCTCTTAGGTGT+TGG 0.562954 8_1:+5082559 Msa1174040:CDS
CTAAGCTTGATGCTGAAGGA+TGG 0.566918 8_1:+5082926 Msa1174040:CDS
TAATCAATAAGTGTTTCTCT+AGG 0.569952 8_1:+5081994 Msa1174040:CDS
GCAAGTTGTTGAACCTCTTG+GGG 0.573050 8_1:-5082963 None:intergenic
TTGTCTAAGCTTGATGCTGA+AGG 0.574125 8_1:+5082922 Msa1174040:CDS
ATGTTGGTCTTACAGGTGCT+AGG 0.591347 8_1:+5079891 Msa1174040:five_prime_UTR
TCACCAAAGGAAAACACGAA+TGG 0.592926 8_1:-5083289 None:intergenic
ATTGTTTGTCATATCCTACA+AGG 0.594529 8_1:+5082607 Msa1174040:CDS
TAAAGCTTTGAAATAGCATG+TGG 0.595907 8_1:-5082988 None:intergenic
GGTGCAGAAATGCTTGCTTG+TGG 0.601628 8_1:+5079920 Msa1174040:exon
ATCAACAATCTCATCAGTTG+AGG 0.610947 8_1:+5083015 Msa1174040:three_prime_UTR
AGCTTTGAAATAGCATGTGG+AGG 0.613403 8_1:-5082985 None:intergenic
ATTGGAAGAATCATTATGCA+AGG 0.625818 8_1:+5081611 Msa1174040:CDS
GTATGTAGCATACCGATGAA+GGG 0.626747 8_1:-5079961 None:intergenic
TTTCATCGAGACCACATCAG+TGG 0.638922 8_1:-5083321 None:intergenic
AGATAAAGACAGGAAACCAA+AGG 0.644265 8_1:+5082757 Msa1174040:CDS
GAAATTAACATCCACTGATG+TGG 0.660086 8_1:+5083310 Msa1174040:three_prime_UTR
CCTACAAGGACACCATAGCA+AGG 0.672173 8_1:+5082621 Msa1174040:CDS
GGAAGAATCATTATGCAAGG+TGG 0.673416 8_1:+5081614 Msa1174040:CDS
AAGATTTGGAGTTCCCCAAG+AGG 0.673816 8_1:+5082950 Msa1174040:CDS
GTGTTTCTCTAGGAAAACAG+TGG 0.677969 8_1:+5082004 Msa1174040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGATATAATTTATTT+TGG - chr8_1:5080935-5080954 None:intergenic 10.0%
!! AAAGTAAGAAAAAAAATTAA+TGG - chr8_1:5082416-5082435 None:intergenic 10.0%
!!! TATTTGTATTGTATTTATTT+TGG + chr8_1:5082821-5082840 Msa1174040:intron 10.0%
!! TTGTAACATTTAATACTTTA+TGG - chr8_1:5082272-5082291 None:intergenic 15.0%
!! AATTACAAAATATCTAAATC+TGG - chr8_1:5082373-5082392 None:intergenic 15.0%
!! TAGTAAGAAAAATTGAAAAT+TGG - chr8_1:5082491-5082510 None:intergenic 15.0%
!! AACATTTATCAAATTCAATA+AGG - chr8_1:5083269-5083288 None:intergenic 15.0%
!! AAGTTTATCATGAAATATCT+AGG + chr8_1:5080135-5080154 Msa1174040:intron 20.0%
!! AGTTTATCATGAAATATCTA+GGG + chr8_1:5080136-5080155 Msa1174040:intron 20.0%
!! TAAATTAAAGGAAATGACAA+AGG - chr8_1:5080641-5080660 None:intergenic 20.0%
!!! GTGAAATAGCTTTAAATTAA+AGG - chr8_1:5080653-5080672 None:intergenic 20.0%
!! ATATACAATTTGTGAAGATT+AGG + chr8_1:5081188-5081207 Msa1174040:intron 20.0%
!! TATATGATGTTAAAACTCTT+TGG + chr8_1:5081522-5081541 Msa1174040:intron 20.0%
!! AATATTGCGTGATAAAATTA+TGG - chr8_1:5082140-5082159 None:intergenic 20.0%
!!! TAATTTTATCACGCAATATT+AGG + chr8_1:5082140-5082159 Msa1174040:intron 20.0%
!! AAAAAAATTAATGGCTTAAG+AGG - chr8_1:5082407-5082426 None:intergenic 20.0%
!! GAAAAATTGAAAATTGGAAA+AGG - chr8_1:5082485-5082504 None:intergenic 20.0%
!! AACTAATTTATGTCTAGTTA+TGG - chr8_1:5082790-5082809 None:intergenic 20.0%
!!! TTATATAAGATCAACTTGTT+CGG - chr8_1:5083116-5083135 None:intergenic 20.0%
!!! TCATAATCAAAAGTATTCCA+TGG - chr8_1:5079771-5079790 None:intergenic 25.0%
!!! TACAGTTTTTTAAGGATTGT+AGG - chr8_1:5080369-5080388 None:intergenic 25.0%
! AGTGCAACATTATATAATCA+GGG - chr8_1:5080424-5080443 None:intergenic 25.0%
! TAAGAAAATGGAAAAAGTGA+AGG - chr8_1:5080580-5080599 None:intergenic 25.0%
! TGGAAAACGTATTAAGAAAA+TGG - chr8_1:5080592-5080611 None:intergenic 25.0%
!! GAAAGTATATAATGTAGACA+TGG - chr8_1:5080612-5080631 None:intergenic 25.0%
! ATCAAGCATACAAATCAATT+TGG - chr8_1:5080757-5080776 None:intergenic 25.0%
! AAGTAATTCTGACTATAAGT+TGG - chr8_1:5080908-5080927 None:intergenic 25.0%
! AAAGAAATTAAGTGTGTGTT+TGG - chr8_1:5080977-5080996 None:intergenic 25.0%
!! GAGATTCATTTTAAACAAGA+TGG + chr8_1:5081384-5081403 Msa1174040:intron 25.0%
!!! TGCACAATTTTTTTTCCTTA+AGG + chr8_1:5081488-5081507 Msa1174040:intron 25.0%
!!! TTTTTTTTCCTTAAGGACTA+TGG + chr8_1:5081495-5081514 Msa1174040:intron 25.0%
! TATAAATACCATAGTCCTTA+AGG - chr8_1:5081506-5081525 None:intergenic 25.0%
!! ATGTTAAAACTCTTTGGTTT+GGG + chr8_1:5081528-5081547 Msa1174040:intron 25.0%
!! ATAAACACTATCCTGTTTTA+GGG - chr8_1:5081697-5081716 None:intergenic 25.0%
! ACAATTGAAACATATCACAT+TGG + chr8_1:5081909-5081928 Msa1174040:intron 25.0%
! TAAGCAAATAGAAAGAAGAA+AGG - chr8_1:5081947-5081966 None:intergenic 25.0%
! TAATCAATAAGTGTTTCTCT+AGG + chr8_1:5081994-5082013 Msa1174040:CDS 25.0%
! CCAATCTAAGAAAAACTTTA+AGG - chr8_1:5082242-5082261 None:intergenic 25.0%
!! CCTTAAAGTTTTTCTTAGAT+TGG + chr8_1:5082239-5082258 Msa1174040:CDS 25.0%
! CGTTAAAACTGACAATAAAA+AGG - chr8_1:5082320-5082339 None:intergenic 25.0%
! ATTGAAAATTGGAAAAGGAT+TGG - chr8_1:5082480-5082499 None:intergenic 25.0%
! ATTGATTATGCCTTTATTAG+TGG + chr8_1:5082851-5082870 Msa1174040:intron 25.0%
! TTGATTATGCCTTTATTAGT+GGG + chr8_1:5082852-5082871 Msa1174040:intron 25.0%
! AACTTAATGTTGTGATTCTT+TGG - chr8_1:5083055-5083074 None:intergenic 25.0%
!!! AACATTAAGTTGATTCTTGA+AGG + chr8_1:5083064-5083083 Msa1174040:three_prime_UTR 25.0%
!! ATCAACTAATTTTTGTTGAC+AGG - chr8_1:5083184-5083203 None:intergenic 25.0%
!!! TCCTCTTTTTTCTTTCCTTT+TGG + chr8_1:5079848-5079867 Msa1174040:five_prime_UTR 30.0%
TCCAAAAGGAAAGAAAAAAG+AGG - chr8_1:5079852-5079871 None:intergenic 30.0%
! TCATAAGAAGTGTACATTCA+TGG + chr8_1:5080051-5080070 Msa1174040:intron 30.0%
! CATAAGAAGTGTACATTCAT+GGG + chr8_1:5080052-5080071 Msa1174040:intron 30.0%
! TGAAAACCATTGGTTAACAA+TGG - chr8_1:5080101-5080120 None:intergenic 30.0%
! ATTGTTAACCAATGGTTTTC+AGG + chr8_1:5080100-5080119 Msa1174040:intron 30.0%
!! TGTGAATTTTAATAGACCAG+GGG - chr8_1:5080346-5080365 None:intergenic 30.0%
!! GTGTGAATTTTAATAGACCA+GGG - chr8_1:5080347-5080366 None:intergenic 30.0%
!!! GTTCATGGTACAGTTTTTTA+AGG - chr8_1:5080377-5080396 None:intergenic 30.0%
TGCAACATTATATAATCAGG+GGG - chr8_1:5080422-5080441 None:intergenic 30.0%
GTGCAACATTATATAATCAG+GGG - chr8_1:5080423-5080442 None:intergenic 30.0%
GAGTGCAACATTATATAATC+AGG - chr8_1:5080425-5080444 None:intergenic 30.0%
AAATGGAAAAAGTGAAGGAA+GGG - chr8_1:5080575-5080594 None:intergenic 30.0%
AAAATGGAAAAAGTGAAGGA+AGG - chr8_1:5080576-5080595 None:intergenic 30.0%
AAGGAAATGACAAAGGATAA+AGG - chr8_1:5080634-5080653 None:intergenic 30.0%
! GTGTTATTCTAGTGTATGTT+TGG + chr8_1:5080693-5080712 Msa1174040:intron 30.0%
AATTGTAATCCTTCCAAAAG+TGG - chr8_1:5080721-5080740 None:intergenic 30.0%
TGATTGTTGTCGAATAGAAT+TGG + chr8_1:5080773-5080792 Msa1174040:intron 30.0%
!!! AAATTTTAGAACTTCCCCAA+TGG - chr8_1:5081083-5081102 None:intergenic 30.0%
! TATGCATGTAAACTTTTGAG+TGG + chr8_1:5081239-5081258 Msa1174040:intron 30.0%
CATTGAAACTGTTGAAAGTA+AGG - chr8_1:5081429-5081448 None:intergenic 30.0%
CTTACTTTCAACAGTTTCAA+TGG + chr8_1:5081427-5081446 Msa1174040:intron 30.0%
GATGTTAAAACTCTTTGGTT+TGG + chr8_1:5081527-5081546 Msa1174040:intron 30.0%
!! TGTTAAAACTCTTTGGTTTG+GGG + chr8_1:5081529-5081548 Msa1174040:intron 30.0%
TTGCAAAAGGCAATAAAACA+GGG - chr8_1:5081569-5081588 None:intergenic 30.0%
ATTGCAAAAGGCAATAAAAC+AGG - chr8_1:5081570-5081589 None:intergenic 30.0%
ATTGGAAGAATCATTATGCA+AGG + chr8_1:5081611-5081630 Msa1174040:CDS 30.0%
GTCAATAATTGCAGATACTA+TGG - chr8_1:5081655-5081674 None:intergenic 30.0%
! GATAAACACTATCCTGTTTT+AGG - chr8_1:5081698-5081717 None:intergenic 30.0%
TATTGTCTGTTAAATTCCCT+TGG + chr8_1:5081760-5081779 Msa1174040:intron 30.0%
ATTGTCTGTTAAATTCCCTT+GGG + chr8_1:5081761-5081780 Msa1174040:intron 30.0%
ATGACATGTAATTTGACAGA+CGG - chr8_1:5081798-5081817 None:intergenic 30.0%
TCATAAACATATATCTGTCC+TGG + chr8_1:5081814-5081833 Msa1174040:intron 30.0%
CATAAACATATATCTGTCCT+GGG + chr8_1:5081815-5081834 Msa1174040:intron 30.0%
!! AGAAAAACTTTAAGGCTTGT+CGG - chr8_1:5082234-5082253 None:intergenic 30.0%
! TTACCTTTTCAGATTAGACA+AGG + chr8_1:5082541-5082560 Msa1174040:intron 30.0%
CAATTCTATACTCGTAAACA+AGG - chr8_1:5082591-5082610 None:intergenic 30.0%
ATTGTTTGTCATATCCTACA+AGG + chr8_1:5082607-5082626 Msa1174040:CDS 30.0%
GAAACATGTGTATGAATTGT+TGG - chr8_1:5082663-5082682 None:intergenic 30.0%
AATGTTTATGTCCTACTTCA+GGG + chr8_1:5082716-5082735 Msa1174040:intron 30.0%
CTATACTGATAGATAAAGAC+AGG + chr8_1:5082747-5082766 Msa1174040:CDS 30.0%
!! TAAAGCTTTGAAATAGCATG+TGG - chr8_1:5082991-5083010 None:intergenic 30.0%
!! CATGCTATTTCAAAGCTTTA+AGG + chr8_1:5082991-5083010 Msa1174040:CDS 30.0%
AGGAAAGAAAAAAGAGGAGA+CGG - chr8_1:5079846-5079865 None:intergenic 35.0%
!! CCTGCAATTTGTTTTCCAAA+AGG - chr8_1:5079866-5079885 None:intergenic 35.0%
!! CCTTTTGGAAAACAAATTGC+AGG + chr8_1:5079863-5079882 Msa1174040:five_prime_UTR 35.0%
CAAATTGCAGGAGAATATGT+TGG + chr8_1:5079875-5079894 Msa1174040:five_prime_UTR 35.0%
! AACACATTTTGTCCCTTCAT+CGG + chr8_1:5079949-5079968 Msa1174040:CDS 35.0%
!! TTTCTGCTGATTTGCATCTT+TGG + chr8_1:5080003-5080022 Msa1174040:intron 35.0%
! GAAGTACCATTGTTAACCAA+TGG + chr8_1:5080092-5080111 Msa1174040:intron 35.0%
! ACCTCTTTTGAATGCTTAAG+TGG + chr8_1:5080234-5080253 Msa1174040:intron 35.0%
ACCACTTAAGCATTCAAAAG+AGG - chr8_1:5080238-5080257 None:intergenic 35.0%
!!! ACTGTATGCATTTTTAGCCA+TGG + chr8_1:5080261-5080280 Msa1174040:intron 35.0%
!! GTGAATTTTAATAGACCAGG+GGG - chr8_1:5080345-5080364 None:intergenic 35.0%
!! GGTGTGAATTTTAATAGACC+AGG - chr8_1:5080348-5080367 None:intergenic 35.0%
!! TTCATGGTCAGTTTTTAAGG+GGG - chr8_1:5080399-5080418 None:intergenic 35.0%
!! GTTCATGGTCAGTTTTTAAG+GGG - chr8_1:5080400-5080419 None:intergenic 35.0%
! GGTTCATGGTCAGTTTTTAA+GGG - chr8_1:5080401-5080420 None:intergenic 35.0%
TTATATAATCAGGGGGTTCA+TGG - chr8_1:5080415-5080434 None:intergenic 35.0%
AAAAGATACAAGTTCAGTGC+TGG - chr8_1:5080467-5080486 None:intergenic 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG + chr8_1:5080705-5080724 Msa1174040:intron 35.0%
CCATGATCATCACTTTATCT+TGG - chr8_1:5081111-5081130 None:intergenic 35.0%
CCAAGATAAAGTGATGATCA+TGG + chr8_1:5081108-5081127 Msa1174040:intron 35.0%
! GCTTGAAAAAGGTTTAAGGT+TGG - chr8_1:5081354-5081373 None:intergenic 35.0%
CCTAGCTTGAAAAAGGTTTA+AGG - chr8_1:5081358-5081377 None:intergenic 35.0%
!!! CCTTAAACCTTTTTCAAGCT+AGG + chr8_1:5081355-5081374 Msa1174040:intron 35.0%
CTATGTACCTAGCTTGAAAA+AGG - chr8_1:5081365-5081384 None:intergenic 35.0%
TTCTGTGCATACATTGCAAA+AGG - chr8_1:5081582-5081601 None:intergenic 35.0%
TGCACAGAAATTATCGTCAT+TGG + chr8_1:5081593-5081612 Msa1174040:intron 35.0%
ATAATTGCAGATACTATGGC+TGG - chr8_1:5081651-5081670 None:intergenic 35.0%
AACAGGATAGTGTTTATCAC+AGG + chr8_1:5081700-5081719 Msa1174040:CDS 35.0%
TTATTGTGATTGCTCATTGC+AGG + chr8_1:5081964-5081983 Msa1174040:intron 35.0%
CTATGAGTAAAGCAGATAGT+TGG + chr8_1:5082172-5082191 Msa1174040:CDS 35.0%
AATAAGCGAACAAACCTATG+TGG - chr8_1:5082344-5082363 None:intergenic 35.0%
TTAATGGCTTAAGAGGCAAA+TGG - chr8_1:5082400-5082419 None:intergenic 35.0%
CAATGTTTATGTCCTACTTC+AGG + chr8_1:5082715-5082734 Msa1174040:intron 35.0%
AGATAAAGACAGGAAACCAA+AGG + chr8_1:5082757-5082776 Msa1174040:CDS 35.0%
TTAACAAGCTCCAATTTGGA+AGG - chr8_1:5082880-5082899 None:intergenic 35.0%
!! TTCCAAATTGGAGCTTGTTA+AGG + chr8_1:5082879-5082898 Msa1174040:CDS 35.0%
ATCCTTAACAAGCTCCAATT+TGG - chr8_1:5082884-5082903 None:intergenic 35.0%
ATCAACAATCTCATCAGTTG+AGG + chr8_1:5083015-5083034 Msa1174040:three_prime_UTR 35.0%
GTGGATGTTAATTTCACCAA+AGG - chr8_1:5083305-5083324 None:intergenic 35.0%
GAAATTAACATCCACTGATG+TGG + chr8_1:5083310-5083329 Msa1174040:three_prime_UTR 35.0%
GAAAGAAAAAAGAGGAGACG+GGG - chr8_1:5079844-5079863 None:intergenic 40.0%
GGAAAGAAAAAAGAGGAGAC+GGG - chr8_1:5079845-5079864 None:intergenic 40.0%
!! GGAGAATATGTTGGTCTTAC+AGG + chr8_1:5079884-5079903 Msa1174040:five_prime_UTR 40.0%
GTATGTAGCATACCGATGAA+GGG - chr8_1:5079964-5079983 None:intergenic 40.0%
AGTATGTAGCATACCGATGA+AGG - chr8_1:5079965-5079984 None:intergenic 40.0%
TACACTTCTTATGACTCGAC+TGG - chr8_1:5080045-5080064 None:intergenic 40.0%
!! TCAGTTTTTAAGGGGGTTCA+TGG - chr8_1:5080392-5080411 None:intergenic 40.0%
! GGGTTCATGGTCAGTTTTTA+AGG - chr8_1:5080402-5080421 None:intergenic 40.0%
ATATTGTGTGGTTGCAGTAG+TGG - chr8_1:5080513-5080532 None:intergenic 40.0%
ATAGCACTGCACATATTGTG+TGG - chr8_1:5080525-5080544 None:intergenic 40.0%
AAGGGTCAGAATGTGGTTAT+AGG - chr8_1:5080557-5080576 None:intergenic 40.0%
!! TGTTTGGTTCCACTTTTGGA+AGG + chr8_1:5080709-5080728 Msa1174040:intron 40.0%
TAAGTGTGTGTTTGGTTGTG+CGG - chr8_1:5080969-5080988 None:intergenic 40.0%
TGATCCCAAAATGAAGCCAT+TGG + chr8_1:5081064-5081083 Msa1174040:intron 40.0%
GATCCCAAAATGAAGCCATT+GGG + chr8_1:5081065-5081084 Msa1174040:intron 40.0%
ATCCCAAAATGAAGCCATTG+GGG + chr8_1:5081066-5081085 Msa1174040:intron 40.0%
! TTCCCCAATGGCTTCATTTT+GGG - chr8_1:5081071-5081090 None:intergenic 40.0%
! AAGGTTTAAGGTTGGATCAG+TGG - chr8_1:5081346-5081365 None:intergenic 40.0%
AGTTTCAATGGATCTTCCTG+TGG + chr8_1:5081439-5081458 Msa1174040:intron 40.0%
CCTGTGGAACTTTATTACGT+CGG + chr8_1:5081455-5081474 Msa1174040:intron 40.0%
CTGTGGAACTTTATTACGTC+GGG + chr8_1:5081456-5081475 Msa1174040:intron 40.0%
GGAAGAATCATTATGCAAGG+TGG + chr8_1:5081614-5081633 Msa1174040:CDS 40.0%
!!! ACACTATCCTGTTTTAGGGA+AGG - chr8_1:5081693-5081712 None:intergenic 40.0%
GGATAGTGTTTATCACAGGT+TGG + chr8_1:5081704-5081723 Msa1174040:intron 40.0%
ATTTGACAGACGGTTATCCT+AGG - chr8_1:5081788-5081807 None:intergenic 40.0%
! TCTGTACGTTTCTGAGAACT+TGG + chr8_1:5081849-5081868 Msa1174040:intron 40.0%
!! CATATCACATTGGCTTAGTC+AGG + chr8_1:5081919-5081938 Msa1174040:intron 40.0%
! GTGTTTCTCTAGGAAAACAG+TGG + chr8_1:5082004-5082023 Msa1174040:CDS 40.0%
!! GTCAGTTTTAACGACCACAT+AGG + chr8_1:5082327-5082346 Msa1174040:intron 40.0%
CTGCCTTGTCTAATCTGAAA+AGG - chr8_1:5082547-5082566 None:intergenic 40.0%
! CTTTTCAGATTAGACAAGGC+AGG + chr8_1:5082545-5082564 Msa1174040:intron 40.0%
TAAAGACAGGAAACCAAAGG+TGG + chr8_1:5082760-5082779 Msa1174040:intron 40.0%
AAAGACAGGAAACCAAAGGT+GGG + chr8_1:5082761-5082780 Msa1174040:intron 40.0%
TAGTTATGGTTTCCCACCTT+TGG - chr8_1:5082776-5082795 None:intergenic 40.0%
TGGAAGGATCCCACTAATAA+AGG - chr8_1:5082864-5082883 None:intergenic 40.0%
TTAGTGGGATCCTTCCAAAT+TGG + chr8_1:5082867-5082886 Msa1174040:intron 40.0%
TTGTCTAAGCTTGATGCTGA+AGG + chr8_1:5082922-5082941 Msa1174040:CDS 40.0%
TGCTGAAGGATGGAAAGATT+TGG + chr8_1:5082936-5082955 Msa1174040:CDS 40.0%
!! AGCTTTGAAATAGCATGTGG+AGG - chr8_1:5082988-5083007 None:intergenic 40.0%
! GTTCCATTCGTGTTTTCCTT+TGG + chr8_1:5083286-5083305 Msa1174040:three_prime_UTR 40.0%
TCACCAAAGGAAAACACGAA+TGG - chr8_1:5083292-5083311 None:intergenic 40.0%
!! ATGTTGGTCTTACAGGTGCT+AGG + chr8_1:5079891-5079910 Msa1174040:five_prime_UTR 45.0%
!! TAACCAATGGTTTTCAGGCG+TGG + chr8_1:5080105-5080124 Msa1174040:intron 45.0%
ATTCCACGCCTGAAAACCAT+TGG - chr8_1:5080111-5080130 None:intergenic 45.0%
GGATACAGCTTGAATCTCCA+TGG - chr8_1:5080281-5080300 None:intergenic 45.0%
TTCAAGCTGTATCCAACCCA+TGG + chr8_1:5080287-5080306 Msa1174040:intron 45.0%
TCAAGCTGTATCCAACCCAT+GGG + chr8_1:5080288-5080307 Msa1174040:intron 45.0%
! CTTCCCCAATGGCTTCATTT+TGG - chr8_1:5081072-5081091 None:intergenic 45.0%
CCGACGTAATAAAGTTCCAC+AGG - chr8_1:5081458-5081477 None:intergenic 45.0%
GTTAAATTCCCTTGGGTCCT+AGG + chr8_1:5081768-5081787 Msa1174040:intron 45.0%
TGTGATTGCTCATTGCAGGA+TGG + chr8_1:5081968-5081987 Msa1174040:intron 45.0%
TGTCGGAGATGCTTTCTTCA+AGG - chr8_1:5082217-5082236 None:intergenic 45.0%
ATTAGACAAGGCAGGCTCTT+AGG + chr8_1:5082553-5082572 Msa1174040:CDS 45.0%
CCTCGAAGAAATCCTTGCTA+TGG - chr8_1:5082636-5082655 None:intergenic 45.0%
CCATAGCAAGGATTTCTTCG+AGG + chr8_1:5082633-5082652 Msa1174040:CDS 45.0%
! TAGCTCTACAACCCTGAAGT+AGG - chr8_1:5082730-5082749 None:intergenic 45.0%
CTAAGCTTGATGCTGAAGGA+TGG + chr8_1:5082926-5082945 Msa1174040:CDS 45.0%
! AAGATTTGGAGTTCCCCAAG+AGG + chr8_1:5082950-5082969 Msa1174040:CDS 45.0%
GCAAGTTGTTGAACCTCTTG+GGG - chr8_1:5082966-5082985 None:intergenic 45.0%
GGCAAGTTGTTGAACCTCTT+GGG - chr8_1:5082967-5082986 None:intergenic 45.0%
AGGCAAGTTGTTGAACCTCT+TGG - chr8_1:5082968-5082987 None:intergenic 45.0%
! TGGTCTTACAGGTGCTAGGT+TGG + chr8_1:5079895-5079914 Msa1174040:five_prime_UTR 50.0%
! CTTACAGGTGCTAGGTTGGA+TGG + chr8_1:5079899-5079918 Msa1174040:five_prime_UTR 50.0%
GGTGCAGAAATGCTTGCTTG+TGG + chr8_1:5079920-5079939 Msa1174040:exon 50.0%
ACATATGTAGCTCCGCCCAT+GGG - chr8_1:5080306-5080325 None:intergenic 50.0%
!! CAGTGCTGGCAGTGTTTGAT+TGG - chr8_1:5080453-5080472 None:intergenic 50.0%
GTGAAGGAAGGGTCAGAATG+TGG - chr8_1:5080564-5080583 None:intergenic 50.0%
AGAGCAGCCTTCCCTAAAAC+AGG + chr8_1:5081683-5081702 Msa1174040:CDS 50.0%
ACGGTTATCCTAGGACCCAA+GGG - chr8_1:5081779-5081798 None:intergenic 50.0%
CTGAGAACTTGGAGCATGTC+TGG + chr8_1:5081860-5081879 Msa1174040:intron 50.0%
! CCTTGCTATGGTGTCCTTGT+AGG - chr8_1:5082624-5082643 None:intergenic 50.0%
CCTACAAGGACACCATAGCA+AGG + chr8_1:5082621-5082640 Msa1174040:CDS 50.0%
AGCTGTATCCAACCCATGGG+CGG + chr8_1:5080291-5080310 Msa1174040:intron 55.0%
CACATATGTAGCTCCGCCCA+TGG - chr8_1:5080307-5080326 None:intergenic 55.0%
GGCGGAGCTACATATGTGTG+AGG + chr8_1:5080309-5080328 Msa1174040:intron 55.0%
GACGGTTATCCTAGGACCCA+AGG - chr8_1:5081780-5081799 None:intergenic 55.0%
TACAGAGCTCACACTGTCCC+AGG - chr8_1:5081835-5081854 None:intergenic 55.0%
CAAGGCAGGCTCTTAGGTGT+TGG + chr8_1:5082559-5082578 Msa1174040:CDS 55.0%
ATGTAGCTCCGCCCATGGGT+TGG - chr8_1:5080302-5080321 None:intergenic 60.0%
TGAGGTTCAGCTGAACCCCC+TGG + chr8_1:5080327-5080346 Msa1174040:intron 60.0%
!! TTGCCAGGACTCTGGAGCAG+GGG - chr8_1:5081321-5081340 None:intergenic 60.0%
!! GTTGCCAGGACTCTGGAGCA+GGG - chr8_1:5081322-5081341 None:intergenic 60.0%
GTTGGATCAGTGGCGTTGCC+AGG - chr8_1:5081336-5081355 None:intergenic 60.0%
AACCCCCTGCTCCAGAGTCC+TGG + chr8_1:5081315-5081334 Msa1174040:intron 65.0%
!! TGCCAGGACTCTGGAGCAGG+GGG - chr8_1:5081320-5081339 None:intergenic 65.0%
!! CGTTGCCAGGACTCTGGAGC+AGG - chr8_1:5081323-5081342 None:intergenic 65.0%
CAGTGGCGTTGCCAGGACTC+TGG - chr8_1:5081329-5081348 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5079767 5083338 5079767 ID=Msa1174040;Name=Msa1174040
chr8_1 mRNA 5079767 5083338 5079767 ID=Msa1174040-mRNA-1;Parent=Msa1174040;Name=Msa1174040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=162|1|1|1|1|1|7|327|202
chr8_1 exon 5079767 5079970 5079767 ID=Msa1174040-mRNA-1:exon:1650;Parent=Msa1174040-mRNA-1
chr8_1 exon 5081600 5081721 5081600 ID=Msa1174040-mRNA-1:exon:1651;Parent=Msa1174040-mRNA-1
chr8_1 exon 5081986 5082046 5081986 ID=Msa1174040-mRNA-1:exon:1652;Parent=Msa1174040-mRNA-1
chr8_1 exon 5082162 5082260 5082162 ID=Msa1174040-mRNA-1:exon:1653;Parent=Msa1174040-mRNA-1
chr8_1 exon 5082553 5082654 5082553 ID=Msa1174040-mRNA-1:exon:1654;Parent=Msa1174040-mRNA-1
chr8_1 exon 5082737 5082778 5082737 ID=Msa1174040-mRNA-1:exon:1655;Parent=Msa1174040-mRNA-1
chr8_1 exon 5082871 5083338 5082871 ID=Msa1174040-mRNA-1:exon:1656;Parent=Msa1174040-mRNA-1
chr8_1 five_prime_UTR 5079767 5079928 5079767 ID=Msa1174040-mRNA-1:five_prime_utr;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5079929 5079970 5079929 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5081600 5081721 5081600 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5081986 5082046 5081986 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5082162 5082260 5082162 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5082553 5082654 5082553 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5082737 5082778 5082737 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 CDS 5082871 5083011 5082871 ID=Msa1174040-mRNA-1:cds;Parent=Msa1174040-mRNA-1
chr8_1 three_prime_UTR 5083012 5083338 5083012 ID=Msa1174040-mRNA-1:three_prime_utr;Parent=Msa1174040-mRNA-1
Gene Sequence

>Msa1174040

ATGCTTGCTTGTGGTCTTGCAACACATTTTGTCCCTTCATCGAAATTATCGTCATTGGAAGAATCATTATGCAAGGTGGAAACTAGTGATCCAGCCATAGTATCTGCAATTATTGACAAGTACTCAGAGCAGCCTTCCCTAAAACAGGATAGTGTTTATCACAGGATGGATGTAATCAATAAGTGTTTCTCTAGGAAAACAGTGGAAGATATATTATATTCTCTTGAGACTGAAGCTATGAGTAAAGCAGATAGTTGGATATCTGCAACTCTTGAAACCTTGAAGAAAGCATCTCCGACAAGCCTTAAAGTTTTTCTTAGATTGATTAGACAAGGCAGGCTCTTAGGTGTTGGTCAATGCCTTGTTTACGAGTATAGAATTGTTTGTCATATCCTACAAGGACACCATAGCAAGGATTTCTTCGAGGGTTGTAGAGCTATACTGATAGATAAAGACAGGAAACCAAAGTGGGATCCTTCCAAATTGGAGCTTGTTAAGGATAGCGATGTTGATCGTTACTTGTCTAAGCTTGATGCTGAAGGATGGAAAGATTTGGAGTTCCCCAAGAGGTTCAACAACTTGCCTCCACATGCTATTTCAAAGCTTTAA

Protein sequence

>Msa1174040

MLACGLATHFVPSSKLSSLEESLCKVETSDPAIVSAIIDKYSEQPSLKQDSVYHRMDVINKCFSRKTVEDILYSLETEAMSKADSWISATLETLKKASPTSLKVFLRLIRQGRLLGVGQCLVYEYRIVCHILQGHHSKDFFEGCRAILIDKDRKPKWDPSKLELVKDSDVDRYLSKLDAEGWKDLEFPKRFNNLPPHAISKL*