Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060430 | XP_003622999.2 | 73.894 | 452 | 111 | 4 | 1 | 448 | 1 | 449 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060430 | sp|Q9SD53|Y3720_ARATH | 25.000 | 424 | 265 | 14 | 44 | 443 | 61 | 455 | 4.57e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060430 | G7L2D6 | 73.894 | 452 | 111 | 4 | 1 | 448 | 1 | 449 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218810 | Msa1060430 | 0.804754 | 1.855916e-49 | -8.615850e-47 |
| Msa1019430 | Msa1060430 | 0.800459 | 1.427173e-48 | -8.615850e-47 |
| Msa1019470 | Msa1060430 | 0.810343 | 1.208254e-50 | -8.615850e-47 |
| Msa0961610 | Msa1060430 | 0.800257 | 1.568613e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060430 | MtrunA17_Chr7g0238141 | 73.894 | 452 | 111 | 4 | 1 | 448 | 1 | 449 | 0.0 | 629 |
| Msa1060430 | MtrunA17_Chr7g0238231 | 62.777 | 497 | 131 | 7 | 1 | 448 | 1 | 492 | 0.0 | 597 |
| Msa1060430 | MtrunA17_Chr7g0238171 | 61.069 | 524 | 125 | 6 | 1 | 448 | 1 | 521 | 0.0 | 594 |
| Msa1060430 | MtrunA17_Chr7g0238191 | 71.586 | 454 | 110 | 9 | 1 | 448 | 1 | 441 | 0.0 | 591 |
| Msa1060430 | MtrunA17_Chr7g0238241 | 67.591 | 469 | 127 | 6 | 1 | 446 | 1 | 467 | 0.0 | 588 |
| Msa1060430 | MtrunA17_Chr7g0238101 | 62.500 | 480 | 145 | 7 | 1 | 446 | 1 | 479 | 0.0 | 566 |
| Msa1060430 | MtrunA17_Chr7g0238511 | 62.115 | 454 | 150 | 5 | 1 | 448 | 1 | 438 | 0.0 | 557 |
| Msa1060430 | MtrunA17_Chr7g0238111 | 59.692 | 454 | 156 | 8 | 1 | 448 | 1 | 433 | 0.0 | 518 |
| Msa1060430 | MtrunA17_Chr7g0238131 | 61.871 | 417 | 140 | 4 | 51 | 448 | 1 | 417 | 2.69e-179 | 507 |
| Msa1060430 | MtrunA17_Chr7g0238251 | 54.217 | 498 | 172 | 8 | 1 | 448 | 1 | 492 | 8.97e-163 | 468 |
| Msa1060430 | MtrunA17_Chr7g0238181 | 57.743 | 381 | 132 | 6 | 72 | 448 | 1 | 356 | 6.02e-145 | 417 |
| Msa1060430 | MtrunA17_Chr7g0232531 | 67.308 | 260 | 70 | 3 | 1 | 245 | 1 | 260 | 5.00e-113 | 333 |
| Msa1060430 | MtrunA17_Chr7g0238291 | 67.816 | 261 | 62 | 4 | 1 | 245 | 1 | 255 | 1.66e-112 | 331 |
| Msa1060430 | MtrunA17_Chr7g0238151 | 62.891 | 256 | 82 | 3 | 2 | 245 | 1 | 255 | 1.47e-102 | 306 |
| Msa1060430 | MtrunA17_Chr7g0238281 | 78.571 | 182 | 39 | 0 | 266 | 447 | 3 | 184 | 1.67e-93 | 280 |
| Msa1060430 | MtrunA17_Chr7g0238031 | 72.449 | 196 | 50 | 2 | 2 | 194 | 1 | 195 | 3.02e-92 | 289 |
| Msa1060430 | MtrunA17_Chr7g0238051 | 54.348 | 276 | 84 | 3 | 215 | 448 | 92 | 367 | 1.33e-91 | 282 |
| Msa1060430 | MtrunA17_Chr7g0238201 | 74.176 | 182 | 44 | 2 | 1 | 180 | 1 | 181 | 3.94e-89 | 269 |
| Msa1060430 | MtrunA17_Chr8g0352511 | 35.556 | 495 | 242 | 16 | 4 | 445 | 2 | 472 | 5.25e-88 | 276 |
| Msa1060430 | MtrunA17_Chr7g0238071 | 71.809 | 188 | 47 | 3 | 1 | 186 | 1 | 184 | 1.16e-87 | 266 |
| Msa1060430 | MtrunA17_Chr8g0354591 | 37.214 | 481 | 237 | 15 | 8 | 445 | 1 | 459 | 1.19e-86 | 272 |
| Msa1060430 | MtrunA17_Chr7g0238091 | 63.684 | 190 | 68 | 1 | 260 | 448 | 32 | 221 | 3.37e-80 | 247 |
| Msa1060430 | MtrunA17_Chr8g0354581 | 36.511 | 493 | 233 | 17 | 8 | 446 | 1 | 467 | 1.29e-75 | 244 |
| Msa1060430 | MtrunA17_Chr7g0238081 | 59.783 | 184 | 65 | 2 | 266 | 448 | 2 | 177 | 3.33e-71 | 223 |
| Msa1060430 | MtrunA17_Chr7g0232521 | 63.351 | 191 | 67 | 2 | 252 | 439 | 23 | 213 | 1.37e-70 | 222 |
| Msa1060430 | MtrunA17_Chr7g0238211 | 64.130 | 184 | 65 | 1 | 266 | 448 | 2 | 185 | 2.28e-70 | 221 |
| Msa1060430 | MtrunA17_Chr7g0238021 | 61.828 | 186 | 51 | 5 | 72 | 239 | 1 | 184 | 5.94e-65 | 207 |
| Msa1060430 | MtrunA17_Chr1g0170061 | 51.269 | 197 | 69 | 6 | 2 | 195 | 1 | 173 | 2.00e-48 | 166 |
| Msa1060430 | MtrunA17_Chr8g0352491 | 41.081 | 185 | 93 | 3 | 277 | 445 | 2 | 186 | 1.42e-38 | 138 |
| Msa1060430 | MtrunA17_Chr5g0439641 | 28.266 | 421 | 257 | 11 | 46 | 443 | 49 | 447 | 1.92e-37 | 142 |
| Msa1060430 | MtrunA17_Chr8g0354621 | 45.638 | 149 | 67 | 2 | 311 | 445 | 5 | 153 | 1.65e-33 | 123 |
| Msa1060430 | MtrunA17_Chr8g0354611 | 41.818 | 165 | 77 | 5 | 27 | 181 | 24 | 179 | 2.19e-31 | 121 |
| Msa1060430 | MtrunA17_Chr5g0439721 | 28.000 | 425 | 244 | 15 | 43 | 443 | 46 | 432 | 4.07e-30 | 121 |
| Msa1060430 | MtrunA17_Chr8g0352501 | 43.165 | 139 | 60 | 5 | 50 | 178 | 7 | 136 | 2.16e-26 | 106 |
| Msa1060430 | MtrunA17_Chr5g0439681 | 35.593 | 177 | 108 | 3 | 269 | 443 | 136 | 308 | 1.04e-24 | 103 |
| Msa1060430 | MtrunA17_Chr8g0334971 | 27.765 | 443 | 246 | 14 | 29 | 435 | 29 | 433 | 1.33e-24 | 105 |
| Msa1060430 | MtrunA17_Chr5g0401791 | 39.106 | 179 | 97 | 6 | 271 | 444 | 356 | 527 | 1.16e-23 | 103 |
| Msa1060430 | MtrunA17_Chr6g0452551 | 26.812 | 414 | 254 | 14 | 39 | 443 | 35 | 408 | 8.47e-23 | 100 |
| Msa1060430 | MtrunA17_Chr5g0440401 | 30.594 | 219 | 144 | 5 | 229 | 444 | 2 | 215 | 1.98e-22 | 95.1 |
| Msa1060430 | MtrunA17_Chr6g0452611 | 27.208 | 419 | 247 | 16 | 39 | 443 | 34 | 408 | 3.76e-22 | 98.2 |
| Msa1060430 | MtrunA17_Chr8g0335061 | 26.168 | 428 | 271 | 14 | 29 | 435 | 29 | 432 | 4.84e-22 | 98.2 |
| Msa1060430 | MtrunA17_Chr8g0334911 | 28.784 | 403 | 218 | 15 | 29 | 400 | 30 | 394 | 1.16e-20 | 94.0 |
| Msa1060430 | MtrunA17_Chr8g0335071 | 24.263 | 441 | 292 | 14 | 29 | 445 | 39 | 461 | 1.65e-20 | 93.6 |
| Msa1060430 | MtrunA17_Chr7g0265891 | 26.279 | 430 | 244 | 16 | 44 | 444 | 66 | 451 | 1.73e-20 | 93.6 |
| Msa1060430 | MtrunA17_Chr6g0457371 | 26.969 | 419 | 244 | 16 | 39 | 443 | 35 | 405 | 2.49e-20 | 92.8 |
| Msa1060430 | MtrunA17_Chr6g0452531 | 26.794 | 418 | 251 | 17 | 39 | 443 | 35 | 410 | 3.14e-20 | 92.4 |
| Msa1060430 | MtrunA17_Chr6g0452501 | 25.714 | 420 | 253 | 14 | 39 | 443 | 35 | 410 | 5.65e-20 | 91.7 |
| Msa1060430 | MtrunA17_Chr6g0452591 | 27.229 | 415 | 245 | 15 | 43 | 443 | 69 | 440 | 2.78e-18 | 87.0 |
| Msa1060430 | MtrunA17_Chr2g0300311 | 25.000 | 416 | 270 | 14 | 44 | 446 | 65 | 451 | 2.82e-18 | 87.0 |
| Msa1060430 | MtrunA17_Chr2g0297831 | 23.864 | 440 | 290 | 14 | 14 | 440 | 54 | 461 | 3.57e-18 | 87.0 |
| Msa1060430 | MtrunA17_Chr8g0335021 | 23.733 | 434 | 273 | 14 | 43 | 440 | 41 | 452 | 1.65e-17 | 84.7 |
| Msa1060430 | MtrunA17_Chr8g0334951 | 28.125 | 416 | 214 | 20 | 46 | 415 | 46 | 422 | 1.90e-17 | 84.3 |
| Msa1060430 | MtrunA17_Chr6g0452161 | 25.814 | 430 | 268 | 12 | 29 | 443 | 27 | 420 | 4.37e-15 | 77.0 |
| Msa1060430 | MtrunA17_Chr8g0354871 | 29.319 | 191 | 115 | 5 | 266 | 443 | 198 | 381 | 1.19e-14 | 75.5 |
| Msa1060430 | MtrunA17_Chr8g0335011 | 34.028 | 144 | 90 | 3 | 299 | 438 | 350 | 492 | 2.83e-14 | 74.7 |
| Msa1060430 | MtrunA17_Chr2g0297821 | 28.090 | 178 | 122 | 5 | 271 | 443 | 5 | 181 | 5.88e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060430 | AT3G50120.1 | 28.959 | 442 | 266 | 17 | 29 | 444 | 105 | 524 | 5.12e-35 | 137 |
| Msa1060430 | AT3G50180.1 | 28.571 | 441 | 251 | 17 | 29 | 444 | 180 | 581 | 4.32e-33 | 132 |
| Msa1060430 | AT3G50150.1 | 27.626 | 438 | 268 | 13 | 29 | 444 | 92 | 502 | 2.38e-32 | 129 |
| Msa1060430 | AT3G50130.1 | 28.571 | 448 | 259 | 19 | 29 | 445 | 141 | 558 | 2.03e-28 | 118 |
| Msa1060430 | AT3G50140.1 | 27.126 | 435 | 271 | 17 | 39 | 448 | 123 | 536 | 6.93e-28 | 116 |
| Msa1060430 | AT3G50170.1 | 27.169 | 438 | 277 | 14 | 29 | 444 | 115 | 532 | 2.46e-26 | 112 |
| Msa1060430 | AT5G22540.1 | 27.204 | 397 | 236 | 14 | 44 | 421 | 46 | 408 | 1.56e-25 | 108 |
| Msa1060430 | AT3G50160.1 | 26.682 | 431 | 257 | 17 | 29 | 443 | 106 | 493 | 1.70e-25 | 109 |
| Msa1060430 | AT3G44710.1 | 26.915 | 457 | 264 | 18 | 40 | 444 | 59 | 497 | 1.79e-25 | 109 |
| Msa1060430 | AT3G47200.1 | 25.000 | 424 | 265 | 14 | 44 | 443 | 61 | 455 | 4.64e-25 | 107 |
| Msa1060430 | AT3G47200.2 | 25.000 | 424 | 265 | 14 | 44 | 443 | 61 | 455 | 4.64e-25 | 107 |
| Msa1060430 | AT4G31980.1 | 25.968 | 439 | 255 | 15 | 24 | 443 | 290 | 677 | 1.18e-24 | 107 |
| Msa1060430 | AT5G11290.2 | 26.179 | 424 | 251 | 13 | 37 | 443 | 41 | 419 | 1.43e-24 | 105 |
| Msa1060430 | AT3G50190.1 | 26.464 | 427 | 247 | 18 | 39 | 444 | 106 | 486 | 1.41e-23 | 103 |
| Msa1060430 | AT2G36430.1 | 26.667 | 420 | 251 | 17 | 44 | 443 | 60 | 442 | 4.27e-22 | 98.6 |
| Msa1060430 | AT3G47250.3 | 23.898 | 431 | 265 | 14 | 44 | 444 | 76 | 473 | 7.22e-21 | 95.5 |
| Msa1060430 | AT3G47250.2 | 23.898 | 431 | 265 | 14 | 44 | 444 | 76 | 473 | 7.22e-21 | 95.5 |
| Msa1060430 | AT3G47250.1 | 23.898 | 431 | 265 | 14 | 44 | 444 | 76 | 473 | 7.22e-21 | 95.5 |
| Msa1060430 | AT5G22550.2 | 25.926 | 459 | 250 | 19 | 43 | 444 | 58 | 483 | 6.43e-18 | 86.3 |
| Msa1060430 | AT2G28580.5 | 24.318 | 440 | 269 | 16 | 24 | 443 | 103 | 498 | 1.74e-16 | 82.0 |
| Msa1060430 | AT5G11290.1 | 27.063 | 303 | 176 | 10 | 152 | 443 | 82 | 350 | 1.76e-16 | 80.9 |
| Msa1060430 | AT2G28580.4 | 24.318 | 440 | 269 | 16 | 24 | 443 | 117 | 512 | 2.13e-16 | 82.0 |
| Msa1060430 | AT2G28580.2 | 25.000 | 452 | 268 | 18 | 24 | 443 | 117 | 529 | 8.01e-16 | 80.1 |
| Msa1060430 | AT2G28580.6 | 25.000 | 452 | 268 | 18 | 24 | 443 | 35 | 447 | 8.76e-16 | 79.7 |
| Msa1060430 | AT2G28580.1 | 25.000 | 452 | 268 | 18 | 24 | 443 | 103 | 515 | 9.38e-16 | 80.1 |
| Msa1060430 | AT3G47210.1 | 24.928 | 349 | 226 | 10 | 46 | 386 | 110 | 430 | 2.36e-15 | 78.6 |
| Msa1060430 | AT2G44930.1 | 26.398 | 447 | 260 | 19 | 29 | 443 | 86 | 495 | 3.39e-15 | 78.2 |
| Msa1060430 | AT1G67150.4 | 24.083 | 436 | 273 | 17 | 27 | 443 | 6 | 402 | 1.62e-11 | 66.2 |
| Msa1060430 | AT1G67150.1 | 24.083 | 436 | 273 | 17 | 27 | 443 | 6 | 402 | 1.62e-11 | 66.2 |
| Msa1060430 | AT5G22560.1 | 28.492 | 179 | 105 | 8 | 274 | 442 | 343 | 508 | 3.27e-11 | 65.9 |
| Msa1060430 | AT1G67150.2 | 23.756 | 442 | 271 | 18 | 27 | 443 | 6 | 406 | 9.27e-11 | 63.9 |
Find 81 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGCCCCTGTATGTAAT+TGG | 0.276348 | 7_2:-48611878 | None:intergenic |
| CCAGCCACCCTTTGTATCTT+TGG | 0.276352 | 7_2:-48610689 | None:intergenic |
| TTTCATTCAGACAATGTTTA+CGG | 0.308167 | 7_2:+48612390 | Msa1060430:CDS |
| TCATTCATTCAATATAATAA+TGG | 0.342654 | 7_2:-48610592 | None:intergenic |
| ATGTTCTTTGCTCTATATCT+TGG | 0.348823 | 7_2:+48611009 | Msa1060430:CDS |
| TCAAAATACCTCGAGAATAC+TGG | 0.360505 | 7_2:+48610833 | Msa1060430:CDS |
| ATGCATATATAGTATAATAT+TGG | 0.365394 | 7_2:-48610524 | None:intergenic |
| GACACATCTCATATGCTATC+AGG | 0.397592 | 7_2:-48612045 | None:intergenic |
| AAAGCCTTCAAGAGACTTGC+CGG | 0.398115 | 7_2:-48610942 | None:intergenic |
| TCACCCAAGTTAGTCTCATT+AGG | 0.400484 | 7_2:+48610749 | Msa1060430:CDS |
| GCATGACGAAATTCATCATC+TGG | 0.404336 | 7_2:+48611179 | Msa1060430:CDS |
| GTGAAGGTACTGAGATCAAA+AGG | 0.406085 | 7_2:+48612142 | Msa1060430:CDS |
| GGCAAGTCTCTTGAAGGCTT+TGG | 0.406611 | 7_2:+48610944 | Msa1060430:CDS |
| AAGCAGTAGGAATAAAACTT+AGG | 0.414360 | 7_2:+48611909 | Msa1060430:CDS |
| ACAACCTTCATTTGCCAGTC+GGG | 0.431375 | 7_2:-48612417 | None:intergenic |
| AATTCATCATCTGGAGTGGC+TGG | 0.432180 | 7_2:+48611188 | Msa1060430:CDS |
| CCAAAGATACAAAGGGTGGC+TGG | 0.441884 | 7_2:+48610689 | Msa1060430:CDS |
| TTGTTCTTATGTAGCTCTCA+TGG | 0.446681 | 7_2:+48612093 | Msa1060430:CDS |
| TCAGATTTGTATTGCCATGA+TGG | 0.446876 | 7_2:-48610778 | None:intergenic |
| GCACTTACTTCAAGAATCCT+TGG | 0.452075 | 7_2:+48612323 | Msa1060430:CDS |
| GGCGTCAAGTTTAGAGTTGG+TGG | 0.452203 | 7_2:+48611210 | Msa1060430:CDS |
| TTAACCGGCAAGTCTCTTGA+AGG | 0.453511 | 7_2:+48610938 | Msa1060430:CDS |
| TCTTGGATGTTGTTCGTGGA+TGG | 0.457498 | 7_2:+48610986 | Msa1060430:CDS |
| AGCAGTAGGAATAAAACTTA+GGG | 0.461036 | 7_2:+48611910 | Msa1060430:CDS |
| ATGTTTACGGTTCACCCGAC+TGG | 0.462424 | 7_2:+48612403 | Msa1060430:CDS |
| AGTTCAAGCCAATTACATAC+AGG | 0.466848 | 7_2:+48611870 | Msa1060430:CDS |
| ATTGTATTGTACCTTGGACT+TGG | 0.477438 | 7_2:-48611335 | None:intergenic |
| AACTTCCTCATCACTCCAAA+AGG | 0.479306 | 7_2:-48612176 | None:intergenic |
| ATTCAATATAATAATGGTTG+AGG | 0.483552 | 7_2:-48610586 | None:intergenic |
| GAGAGAAGTACAAGCTTATG+TGG | 0.490975 | 7_2:+48610807 | Msa1060430:CDS |
| TTATTATATTGAATGAATGA+TGG | 0.492360 | 7_2:+48610595 | Msa1060430:exon |
| AGGACCTAATGAGACTAACT+TGG | 0.497059 | 7_2:-48610753 | None:intergenic |
| AATAGCTTGAGTACTTCATA+AGG | 0.505382 | 7_2:-48611121 | None:intergenic |
| TGCAGCAAGGAATGCAATAA+CGG | 0.510768 | 7_2:-48612347 | None:intergenic |
| TTTGTATTGCCATGATGGAT+AGG | 0.515864 | 7_2:-48610773 | None:intergenic |
| ATGAAGTACTCAAGCTATTG+TGG | 0.515875 | 7_2:+48611125 | Msa1060430:CDS |
| ATACAAGACTTGGATAGCGC+TGG | 0.517586 | 7_2:+48612294 | Msa1060430:CDS |
| ACCTATGATATTGAAAAGAC+TGG | 0.521468 | 7_2:-48612200 | None:intergenic |
| CAATATCATAGGTACTGACT+TGG | 0.522571 | 7_2:+48612210 | Msa1060430:CDS |
| CAAAGATACAAAGGGTGGCT+GGG | 0.526353 | 7_2:+48610690 | Msa1060430:CDS |
| ACTTTAATAAATACAAGACT+TGG | 0.526728 | 7_2:+48612284 | Msa1060430:CDS |
| GGCAATACAAATCTGATGAC+AGG | 0.527902 | 7_2:+48610785 | Msa1060430:CDS |
| ATGAAGCTAAAATCAGAGAA+TGG | 0.532341 | 7_2:+48611831 | Msa1060430:CDS |
| CTCAGTACCTTCACATCTTG+AGG | 0.532737 | 7_2:-48612133 | None:intergenic |
| TCAGAGAAAACTATGTCTGT+TGG | 0.532878 | 7_2:-48611950 | None:intergenic |
| TACACGACCAAAGATACAAA+GGG | 0.534959 | 7_2:+48610682 | Msa1060430:CDS |
| CTGGGCGTCAAGTTTAGAGT+TGG | 0.535088 | 7_2:+48611207 | Msa1060430:CDS |
| TACAAGACTTGGATAGCGCT+GGG | 0.535966 | 7_2:+48612295 | Msa1060430:CDS |
| GCATTGATGAAAAGCTGTCT+TGG | 0.536198 | 7_2:+48610969 | Msa1060430:CDS |
| GAGTTGGTGGAGGAAAGAGA+AGG | 0.543174 | 7_2:+48611223 | Msa1060430:CDS |
| AATGCTCACGTAATTTCAGT+TGG | 0.546535 | 7_2:-48612261 | None:intergenic |
| AGCTTAATATTCATGTGCAG+TGG | 0.560206 | 7_2:-48611046 | None:intergenic |
| TTCACCCGACTGGCAAATGA+AGG | 0.563597 | 7_2:+48612413 | Msa1060430:CDS |
| ATAAGATCAAGAAGATGAGC+AGG | 0.566196 | 7_2:-48611289 | None:intergenic |
| GCTGTCTTGGATGTTGTTCG+TGG | 0.567905 | 7_2:+48610982 | Msa1060430:CDS |
| ATAGAAGATCTAAAAGCAGT+AGG | 0.576465 | 7_2:+48611896 | Msa1060430:CDS |
| TCATTAGGTCCTATCCATCA+TGG | 0.581031 | 7_2:+48610764 | Msa1060430:CDS |
| AACAACCTTCATTTGCCAGT+CGG | 0.584026 | 7_2:-48612418 | None:intergenic |
| AGGAATGCAATAACGGTCCA+AGG | 0.588287 | 7_2:-48612340 | None:intergenic |
| TCTGAATGAAAGTAAGAGCA+AGG | 0.592822 | 7_2:-48612378 | None:intergenic |
| GCTTAATATTCATGTGCAGT+GGG | 0.595071 | 7_2:-48611045 | None:intergenic |
| TGAAGGTACTGAGATCAAAA+GGG | 0.595602 | 7_2:+48612143 | Msa1060430:CDS |
| ATTCATCATCTGGAGTGGCT+GGG | 0.598046 | 7_2:+48611189 | Msa1060430:CDS |
| GTCAAGTTTAGAGTTGGTGG+AGG | 0.600717 | 7_2:+48611213 | Msa1060430:CDS |
| CGACCATCCTCAAGATGTGA+AGG | 0.603680 | 7_2:+48612126 | Msa1060430:CDS |
| ATACACGACCAAAGATACAA+AGG | 0.606866 | 7_2:+48610681 | Msa1060430:CDS |
| ACGAAATTCATCATCTGGAG+TGG | 0.607120 | 7_2:+48611184 | Msa1060430:CDS |
| GTTCAAGCCAATTACATACA+GGG | 0.610155 | 7_2:+48611871 | Msa1060430:CDS |
| TGTGTAGATCACGTGGATTG+CGG | 0.610938 | 7_2:-48610856 | None:intergenic |
| GTGGAAAGATAACAACGAGA+GGG | 0.615715 | 7_2:+48611144 | Msa1060430:CDS |
| GTACCTTCACATCTTGAGGA+TGG | 0.616433 | 7_2:-48612129 | None:intergenic |
| CGTCACTACATCCAAGTCCA+AGG | 0.633357 | 7_2:+48611324 | Msa1060430:CDS |
| GGACCTAATGAGACTAACTT+GGG | 0.639393 | 7_2:-48610752 | None:intergenic |
| TATCAGGTTGAGTAAAGTAG+TGG | 0.644075 | 7_2:-48612029 | None:intergenic |
| CTGAATGAAAGTAAGAGCAA+GGG | 0.649353 | 7_2:-48612377 | None:intergenic |
| TGTGGAAAGATAACAACGAG+AGG | 0.651097 | 7_2:+48611143 | Msa1060430:CDS |
| AGAGAAGTACAAGCTTATGT+GGG | 0.651797 | 7_2:+48610808 | Msa1060430:CDS |
| TTCAAGCCAATTACATACAG+GGG | 0.656237 | 7_2:+48611872 | Msa1060430:CDS |
| CAAGGGCAATAAATGCAGCA+AGG | 0.656895 | 7_2:-48612360 | None:intergenic |
| GATTGCGGCCAGTATTCTCG+AGG | 0.694438 | 7_2:-48610841 | None:intergenic |
| ACGACCAAAGATACAAAGGG+TGG | 0.724861 | 7_2:+48610685 | Msa1060430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCATATATAGTATAATAT+TGG | - | chr7_2:48610527-48610546 | None:intergenic | 15.0% |
| !! | TCATTCATTCAATATAATAA+TGG | - | chr7_2:48610595-48610614 | None:intergenic | 15.0% |
| !! | TTATTATATTGAATGAATGA+TGG | + | chr7_2:48610595-48610614 | Msa1060430:exon | 15.0% |
| !!! | ACAAAAGTGATTTTTATTAT+TGG | + | chr7_2:48611714-48611733 | Msa1060430:intron | 15.0% |
| !! | ATGCATATATAGTATAATAT+TGG | - | chr7_2:48610527-48610546 | None:intergenic | 15.0% |
| !! | TCATTCATTCAATATAATAA+TGG | - | chr7_2:48610595-48610614 | None:intergenic | 15.0% |
| !! | TTATTATATTGAATGAATGA+TGG | + | chr7_2:48610595-48610614 | Msa1060430:exon | 15.0% |
| !!! | ACAAAAGTGATTTTTATTAT+TGG | + | chr7_2:48611714-48611733 | Msa1060430:intron | 15.0% |
| !! | ATTCAATATAATAATGGTTG+AGG | - | chr7_2:48610589-48610608 | None:intergenic | 20.0% |
| !! | TTCTGACAAAAATATAGAAA+CGG | - | chr7_2:48611499-48611518 | None:intergenic | 20.0% |
| !!! | TGATTTTTATTATTGGACAA+AGG | + | chr7_2:48611721-48611740 | Msa1060430:intron | 20.0% |
| !! | ACTTTAATAAATACAAGACT+TGG | + | chr7_2:48612284-48612303 | Msa1060430:CDS | 20.0% |
| !! | ATTCAATATAATAATGGTTG+AGG | - | chr7_2:48610589-48610608 | None:intergenic | 20.0% |
| !! | TTCTGACAAAAATATAGAAA+CGG | - | chr7_2:48611499-48611518 | None:intergenic | 20.0% |
| !!! | TGATTTTTATTATTGGACAA+AGG | + | chr7_2:48611721-48611740 | Msa1060430:intron | 20.0% |
| !! | ACTTTAATAAATACAAGACT+TGG | + | chr7_2:48612284-48612303 | Msa1060430:CDS | 20.0% |
| ! | TTGTTAATTGTATTGTACCT+TGG | - | chr7_2:48611362-48611381 | None:intergenic | 25.0% |
| !!! | TGTTTTAACCAGAAATGAAT+TGG | - | chr7_2:48611798-48611817 | None:intergenic | 25.0% |
| !!! | AAGTTGTTCACATTGATTTT+AGG | - | chr7_2:48612004-48612023 | None:intergenic | 25.0% |
| ! | TTTCATTCAGACAATGTTTA+CGG | + | chr7_2:48612390-48612409 | Msa1060430:CDS | 25.0% |
| ! | TTGTTAATTGTATTGTACCT+TGG | - | chr7_2:48611362-48611381 | None:intergenic | 25.0% |
| !!! | TGTTTTAACCAGAAATGAAT+TGG | - | chr7_2:48611798-48611817 | None:intergenic | 25.0% |
| !!! | AAGTTGTTCACATTGATTTT+AGG | - | chr7_2:48612004-48612023 | None:intergenic | 25.0% |
| ! | TTTCATTCAGACAATGTTTA+CGG | + | chr7_2:48612390-48612409 | Msa1060430:CDS | 25.0% |
| !!! | TTTTTTTTCGAGGGTAGTTT+GGG | - | chr7_2:48610624-48610643 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTCGAGGGTAGTT+TGG | - | chr7_2:48610625-48610644 | None:intergenic | 30.0% |
| TACCCTCGAAAAAAAAATTG+TGG | + | chr7_2:48610628-48610647 | Msa1060430:CDS | 30.0% | |
| !!! | CTCCACAATTTTTTTTTCGA+GGG | - | chr7_2:48610633-48610652 | None:intergenic | 30.0% |
| !!! | GACGATGTTTTAACTTTAAC+CGG | + | chr7_2:48610923-48610942 | Msa1060430:CDS | 30.0% |
| ATGTTCTTTGCTCTATATCT+TGG | + | chr7_2:48611009-48611028 | Msa1060430:CDS | 30.0% | |
| AATAGCTTGAGTACTTCATA+AGG | - | chr7_2:48611124-48611143 | None:intergenic | 30.0% | |
| ! | TAAATTTTGTCTCACACTTG+AGG | + | chr7_2:48611445-48611464 | Msa1060430:intron | 30.0% |
| ! | AAATTTTGTCTCACACTTGA+GGG | + | chr7_2:48611446-48611465 | Msa1060430:intron | 30.0% |
| TTAACCAGAAATGAATTGGT+TGG | - | chr7_2:48611794-48611813 | None:intergenic | 30.0% | |
| ATGAAGCTAAAATCAGAGAA+TGG | + | chr7_2:48611831-48611850 | Msa1060430:CDS | 30.0% | |
| ATAGAAGATCTAAAAGCAGT+AGG | + | chr7_2:48611896-48611915 | Msa1060430:CDS | 30.0% | |
| AAGCAGTAGGAATAAAACTT+AGG | + | chr7_2:48611909-48611928 | Msa1060430:CDS | 30.0% | |
| AGCAGTAGGAATAAAACTTA+GGG | + | chr7_2:48611910-48611929 | Msa1060430:CDS | 30.0% | |
| ACCTATGATATTGAAAAGAC+TGG | - | chr7_2:48612203-48612222 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCGAGGGTAGTTT+GGG | - | chr7_2:48610624-48610643 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTCGAGGGTAGTT+TGG | - | chr7_2:48610625-48610644 | None:intergenic | 30.0% |
| TACCCTCGAAAAAAAAATTG+TGG | + | chr7_2:48610628-48610647 | Msa1060430:CDS | 30.0% | |
| !!! | CTCCACAATTTTTTTTTCGA+GGG | - | chr7_2:48610633-48610652 | None:intergenic | 30.0% |
| !!! | GACGATGTTTTAACTTTAAC+CGG | + | chr7_2:48610923-48610942 | Msa1060430:CDS | 30.0% |
| ATGTTCTTTGCTCTATATCT+TGG | + | chr7_2:48611009-48611028 | Msa1060430:CDS | 30.0% | |
| AATAGCTTGAGTACTTCATA+AGG | - | chr7_2:48611124-48611143 | None:intergenic | 30.0% | |
| ! | TAAATTTTGTCTCACACTTG+AGG | + | chr7_2:48611445-48611464 | Msa1060430:intron | 30.0% |
| ! | AAATTTTGTCTCACACTTGA+GGG | + | chr7_2:48611446-48611465 | Msa1060430:intron | 30.0% |
| TTAACCAGAAATGAATTGGT+TGG | - | chr7_2:48611794-48611813 | None:intergenic | 30.0% | |
| ATGAAGCTAAAATCAGAGAA+TGG | + | chr7_2:48611831-48611850 | Msa1060430:CDS | 30.0% | |
| ATAGAAGATCTAAAAGCAGT+AGG | + | chr7_2:48611896-48611915 | Msa1060430:CDS | 30.0% | |
| AAGCAGTAGGAATAAAACTT+AGG | + | chr7_2:48611909-48611928 | Msa1060430:CDS | 30.0% | |
| AGCAGTAGGAATAAAACTTA+GGG | + | chr7_2:48611910-48611929 | Msa1060430:CDS | 30.0% | |
| ACCTATGATATTGAAAAGAC+TGG | - | chr7_2:48612203-48612222 | None:intergenic | 30.0% | |
| !!! | GCTCCACAATTTTTTTTTCG+AGG | - | chr7_2:48610634-48610653 | None:intergenic | 35.0% |
| ATACACGACCAAAGATACAA+AGG | + | chr7_2:48610681-48610700 | Msa1060430:CDS | 35.0% | |
| TACACGACCAAAGATACAAA+GGG | + | chr7_2:48610682-48610701 | Msa1060430:CDS | 35.0% | |
| !! | TTTGTATTGCCATGATGGAT+AGG | - | chr7_2:48610776-48610795 | None:intergenic | 35.0% |
| TCAGATTTGTATTGCCATGA+TGG | - | chr7_2:48610781-48610800 | None:intergenic | 35.0% | |
| ! | AGAGAAGTACAAGCTTATGT+GGG | + | chr7_2:48610808-48610827 | Msa1060430:CDS | 35.0% |
| TCAAAATACCTCGAGAATAC+TGG | + | chr7_2:48610833-48610852 | Msa1060430:CDS | 35.0% | |
| ! | ATCTTTTTGTGTAGATCACG+TGG | - | chr7_2:48610866-48610885 | None:intergenic | 35.0% |
| GCTTAATATTCATGTGCAGT+GGG | - | chr7_2:48611048-48611067 | None:intergenic | 35.0% | |
| AGCTTAATATTCATGTGCAG+TGG | - | chr7_2:48611049-48611068 | None:intergenic | 35.0% | |
| ! | ATGAAGTACTCAAGCTATTG+TGG | + | chr7_2:48611125-48611144 | Msa1060430:CDS | 35.0% |
| ATAAGATCAAGAAGATGAGC+AGG | - | chr7_2:48611292-48611311 | None:intergenic | 35.0% | |
| ATTGTATTGTACCTTGGACT+TGG | - | chr7_2:48611338-48611357 | None:intergenic | 35.0% | |
| CTTGGAATTGTATTGTACCT+TGG | - | chr7_2:48611344-48611363 | None:intergenic | 35.0% | |
| CAAGGTACAATACAATTCCA+AGG | + | chr7_2:48611342-48611361 | Msa1060430:intron | 35.0% | |
| ! | AATTTTCAATCCTTAACCCC+CGG | + | chr7_2:48611650-48611669 | Msa1060430:intron | 35.0% |
| TGATCCAACCAATTCATTTC+TGG | + | chr7_2:48611787-48611806 | Msa1060430:intron | 35.0% | |
| AGTTCAAGCCAATTACATAC+AGG | + | chr7_2:48611870-48611889 | Msa1060430:CDS | 35.0% | |
| GTTCAAGCCAATTACATACA+GGG | + | chr7_2:48611871-48611890 | Msa1060430:CDS | 35.0% | |
| TTCAAGCCAATTACATACAG+GGG | + | chr7_2:48611872-48611891 | Msa1060430:CDS | 35.0% | |
| TCAGAGAAAACTATGTCTGT+TGG | - | chr7_2:48611953-48611972 | None:intergenic | 35.0% | |
| ! | ACAGACATAGTTTTCTCTGA+AGG | + | chr7_2:48611953-48611972 | Msa1060430:CDS | 35.0% |
| !! | ACATAGTTTTCTCTGAAGGA+TGG | + | chr7_2:48611957-48611976 | Msa1060430:CDS | 35.0% |
| !! | TATCAGGTTGAGTAAAGTAG+TGG | - | chr7_2:48612032-48612051 | None:intergenic | 35.0% |
| TTGTTCTTATGTAGCTCTCA+TGG | + | chr7_2:48612093-48612112 | Msa1060430:CDS | 35.0% | |
| !! | TGAAGGTACTGAGATCAAAA+GGG | + | chr7_2:48612143-48612162 | Msa1060430:CDS | 35.0% |
| ! | GCCAGTCTTTTCAATATCAT+AGG | + | chr7_2:48612199-48612218 | Msa1060430:CDS | 35.0% |
| !! | CAATATCATAGGTACTGACT+TGG | + | chr7_2:48612210-48612229 | Msa1060430:CDS | 35.0% |
| AATGCTCACGTAATTTCAGT+TGG | - | chr7_2:48612264-48612283 | None:intergenic | 35.0% | |
| CTGAATGAAAGTAAGAGCAA+GGG | - | chr7_2:48612380-48612399 | None:intergenic | 35.0% | |
| TCTGAATGAAAGTAAGAGCA+AGG | - | chr7_2:48612381-48612400 | None:intergenic | 35.0% | |
| !!! | GCTCCACAATTTTTTTTTCG+AGG | - | chr7_2:48610634-48610653 | None:intergenic | 35.0% |
| ATACACGACCAAAGATACAA+AGG | + | chr7_2:48610681-48610700 | Msa1060430:CDS | 35.0% | |
| TACACGACCAAAGATACAAA+GGG | + | chr7_2:48610682-48610701 | Msa1060430:CDS | 35.0% | |
| !! | TTTGTATTGCCATGATGGAT+AGG | - | chr7_2:48610776-48610795 | None:intergenic | 35.0% |
| TCAGATTTGTATTGCCATGA+TGG | - | chr7_2:48610781-48610800 | None:intergenic | 35.0% | |
| ! | AGAGAAGTACAAGCTTATGT+GGG | + | chr7_2:48610808-48610827 | Msa1060430:CDS | 35.0% |
| TCAAAATACCTCGAGAATAC+TGG | + | chr7_2:48610833-48610852 | Msa1060430:CDS | 35.0% | |
| ! | ATCTTTTTGTGTAGATCACG+TGG | - | chr7_2:48610866-48610885 | None:intergenic | 35.0% |
| GCTTAATATTCATGTGCAGT+GGG | - | chr7_2:48611048-48611067 | None:intergenic | 35.0% | |
| AGCTTAATATTCATGTGCAG+TGG | - | chr7_2:48611049-48611068 | None:intergenic | 35.0% | |
| ! | ATGAAGTACTCAAGCTATTG+TGG | + | chr7_2:48611125-48611144 | Msa1060430:CDS | 35.0% |
| ATAAGATCAAGAAGATGAGC+AGG | - | chr7_2:48611292-48611311 | None:intergenic | 35.0% | |
| ATTGTATTGTACCTTGGACT+TGG | - | chr7_2:48611338-48611357 | None:intergenic | 35.0% | |
| CTTGGAATTGTATTGTACCT+TGG | - | chr7_2:48611344-48611363 | None:intergenic | 35.0% | |
| CAAGGTACAATACAATTCCA+AGG | + | chr7_2:48611342-48611361 | Msa1060430:intron | 35.0% | |
| ! | AATTTTCAATCCTTAACCCC+CGG | + | chr7_2:48611650-48611669 | Msa1060430:intron | 35.0% |
| TGATCCAACCAATTCATTTC+TGG | + | chr7_2:48611787-48611806 | Msa1060430:intron | 35.0% | |
| AGTTCAAGCCAATTACATAC+AGG | + | chr7_2:48611870-48611889 | Msa1060430:CDS | 35.0% | |
| GTTCAAGCCAATTACATACA+GGG | + | chr7_2:48611871-48611890 | Msa1060430:CDS | 35.0% | |
| TTCAAGCCAATTACATACAG+GGG | + | chr7_2:48611872-48611891 | Msa1060430:CDS | 35.0% | |
| TCAGAGAAAACTATGTCTGT+TGG | - | chr7_2:48611953-48611972 | None:intergenic | 35.0% | |
| ! | ACAGACATAGTTTTCTCTGA+AGG | + | chr7_2:48611953-48611972 | Msa1060430:CDS | 35.0% |
| !! | ACATAGTTTTCTCTGAAGGA+TGG | + | chr7_2:48611957-48611976 | Msa1060430:CDS | 35.0% |
| !! | TATCAGGTTGAGTAAAGTAG+TGG | - | chr7_2:48612032-48612051 | None:intergenic | 35.0% |
| TTGTTCTTATGTAGCTCTCA+TGG | + | chr7_2:48612093-48612112 | Msa1060430:CDS | 35.0% | |
| !! | TGAAGGTACTGAGATCAAAA+GGG | + | chr7_2:48612143-48612162 | Msa1060430:CDS | 35.0% |
| ! | GCCAGTCTTTTCAATATCAT+AGG | + | chr7_2:48612199-48612218 | Msa1060430:CDS | 35.0% |
| !! | CAATATCATAGGTACTGACT+TGG | + | chr7_2:48612210-48612229 | Msa1060430:CDS | 35.0% |
| AATGCTCACGTAATTTCAGT+TGG | - | chr7_2:48612264-48612283 | None:intergenic | 35.0% | |
| CTGAATGAAAGTAAGAGCAA+GGG | - | chr7_2:48612380-48612399 | None:intergenic | 35.0% | |
| TCTGAATGAAAGTAAGAGCA+AGG | - | chr7_2:48612381-48612400 | None:intergenic | 35.0% | |
| ! | TCACCCAAGTTAGTCTCATT+AGG | + | chr7_2:48610749-48610768 | Msa1060430:CDS | 40.0% |
| GGACCTAATGAGACTAACTT+GGG | - | chr7_2:48610755-48610774 | None:intergenic | 40.0% | |
| AGGACCTAATGAGACTAACT+TGG | - | chr7_2:48610756-48610775 | None:intergenic | 40.0% | |
| TCATTAGGTCCTATCCATCA+TGG | + | chr7_2:48610764-48610783 | Msa1060430:CDS | 40.0% | |
| GGCAATACAAATCTGATGAC+AGG | + | chr7_2:48610785-48610804 | Msa1060430:CDS | 40.0% | |
| ! | GAGAGAAGTACAAGCTTATG+TGG | + | chr7_2:48610807-48610826 | Msa1060430:CDS | 40.0% |
| ! | GCATTGATGAAAAGCTGTCT+TGG | + | chr7_2:48610969-48610988 | Msa1060430:CDS | 40.0% |
| ! | GATGATCGATGTGCTTTTGT+TGG | + | chr7_2:48611087-48611106 | Msa1060430:CDS | 40.0% |
| TGTGGAAAGATAACAACGAG+AGG | + | chr7_2:48611143-48611162 | Msa1060430:CDS | 40.0% | |
| GTGGAAAGATAACAACGAGA+GGG | + | chr7_2:48611144-48611163 | Msa1060430:CDS | 40.0% | |
| GCATGACGAAATTCATCATC+TGG | + | chr7_2:48611179-48611198 | Msa1060430:CDS | 40.0% | |
| ACGAAATTCATCATCTGGAG+TGG | + | chr7_2:48611184-48611203 | Msa1060430:CDS | 40.0% | |
| TCTATGCCCCTGTATGTAAT+TGG | - | chr7_2:48611881-48611900 | None:intergenic | 40.0% | |
| GACACATCTCATATGCTATC+AGG | - | chr7_2:48612048-48612067 | None:intergenic | 40.0% | |
| !! | GTGAAGGTACTGAGATCAAA+AGG | + | chr7_2:48612142-48612161 | Msa1060430:CDS | 40.0% |
| ! | AAGGGATTTTGTGCACCTTT+TGG | + | chr7_2:48612161-48612180 | Msa1060430:CDS | 40.0% |
| AACTTCCTCATCACTCCAAA+AGG | - | chr7_2:48612179-48612198 | None:intergenic | 40.0% | |
| GCACTTACTTCAAGAATCCT+TGG | + | chr7_2:48612323-48612342 | Msa1060430:CDS | 40.0% | |
| TGCAGCAAGGAATGCAATAA+CGG | - | chr7_2:48612350-48612369 | None:intergenic | 40.0% | |
| ! | TCACCCAAGTTAGTCTCATT+AGG | + | chr7_2:48610749-48610768 | Msa1060430:CDS | 40.0% |
| GGACCTAATGAGACTAACTT+GGG | - | chr7_2:48610755-48610774 | None:intergenic | 40.0% | |
| AGGACCTAATGAGACTAACT+TGG | - | chr7_2:48610756-48610775 | None:intergenic | 40.0% | |
| TCATTAGGTCCTATCCATCA+TGG | + | chr7_2:48610764-48610783 | Msa1060430:CDS | 40.0% | |
| GGCAATACAAATCTGATGAC+AGG | + | chr7_2:48610785-48610804 | Msa1060430:CDS | 40.0% | |
| ! | GAGAGAAGTACAAGCTTATG+TGG | + | chr7_2:48610807-48610826 | Msa1060430:CDS | 40.0% |
| ! | GCATTGATGAAAAGCTGTCT+TGG | + | chr7_2:48610969-48610988 | Msa1060430:CDS | 40.0% |
| ! | GATGATCGATGTGCTTTTGT+TGG | + | chr7_2:48611087-48611106 | Msa1060430:CDS | 40.0% |
| TGTGGAAAGATAACAACGAG+AGG | + | chr7_2:48611143-48611162 | Msa1060430:CDS | 40.0% | |
| GTGGAAAGATAACAACGAGA+GGG | + | chr7_2:48611144-48611163 | Msa1060430:CDS | 40.0% | |
| GCATGACGAAATTCATCATC+TGG | + | chr7_2:48611179-48611198 | Msa1060430:CDS | 40.0% | |
| ACGAAATTCATCATCTGGAG+TGG | + | chr7_2:48611184-48611203 | Msa1060430:CDS | 40.0% | |
| TCTATGCCCCTGTATGTAAT+TGG | - | chr7_2:48611881-48611900 | None:intergenic | 40.0% | |
| GACACATCTCATATGCTATC+AGG | - | chr7_2:48612048-48612067 | None:intergenic | 40.0% | |
| !! | GTGAAGGTACTGAGATCAAA+AGG | + | chr7_2:48612142-48612161 | Msa1060430:CDS | 40.0% |
| ! | AAGGGATTTTGTGCACCTTT+TGG | + | chr7_2:48612161-48612180 | Msa1060430:CDS | 40.0% |
| AACTTCCTCATCACTCCAAA+AGG | - | chr7_2:48612179-48612198 | None:intergenic | 40.0% | |
| GCACTTACTTCAAGAATCCT+TGG | + | chr7_2:48612323-48612342 | Msa1060430:CDS | 40.0% | |
| TGCAGCAAGGAATGCAATAA+CGG | - | chr7_2:48612350-48612369 | None:intergenic | 40.0% | |
| ACGACCAAAGATACAAAGGG+TGG | + | chr7_2:48610685-48610704 | Msa1060430:CDS | 45.0% | |
| CAAAGATACAAAGGGTGGCT+GGG | + | chr7_2:48610690-48610709 | Msa1060430:CDS | 45.0% | |
| ! | TGTGTAGATCACGTGGATTG+CGG | - | chr7_2:48610859-48610878 | None:intergenic | 45.0% |
| TTAACCGGCAAGTCTCTTGA+AGG | + | chr7_2:48610938-48610957 | Msa1060430:CDS | 45.0% | |
| AAAGCCTTCAAGAGACTTGC+CGG | - | chr7_2:48610945-48610964 | None:intergenic | 45.0% | |
| TCTTGGATGTTGTTCGTGGA+TGG | + | chr7_2:48610986-48611005 | Msa1060430:CDS | 45.0% | |
| ! | AATTCATCATCTGGAGTGGC+TGG | + | chr7_2:48611188-48611207 | Msa1060430:CDS | 45.0% |
| ! | ATTCATCATCTGGAGTGGCT+GGG | + | chr7_2:48611189-48611208 | Msa1060430:CDS | 45.0% |
| !! | GTCAAGTTTAGAGTTGGTGG+AGG | + | chr7_2:48611213-48611232 | Msa1060430:CDS | 45.0% |
| TCACACTTGAGGGCAGAATT+TGG | + | chr7_2:48611456-48611475 | Msa1060430:intron | 45.0% | |
| GTACCTTCACATCTTGAGGA+TGG | - | chr7_2:48612132-48612151 | None:intergenic | 45.0% | |
| CTCAGTACCTTCACATCTTG+AGG | - | chr7_2:48612136-48612155 | None:intergenic | 45.0% | |
| ATACAAGACTTGGATAGCGC+TGG | + | chr7_2:48612294-48612313 | Msa1060430:CDS | 45.0% | |
| TACAAGACTTGGATAGCGCT+GGG | + | chr7_2:48612295-48612314 | Msa1060430:CDS | 45.0% | |
| AGGAATGCAATAACGGTCCA+AGG | - | chr7_2:48612343-48612362 | None:intergenic | 45.0% | |
| CAAGGGCAATAAATGCAGCA+AGG | - | chr7_2:48612363-48612382 | None:intergenic | 45.0% | |
| ACGACCAAAGATACAAAGGG+TGG | + | chr7_2:48610685-48610704 | Msa1060430:CDS | 45.0% | |
| CAAAGATACAAAGGGTGGCT+GGG | + | chr7_2:48610690-48610709 | Msa1060430:CDS | 45.0% | |
| ! | TGTGTAGATCACGTGGATTG+CGG | - | chr7_2:48610859-48610878 | None:intergenic | 45.0% |
| TTAACCGGCAAGTCTCTTGA+AGG | + | chr7_2:48610938-48610957 | Msa1060430:CDS | 45.0% | |
| AAAGCCTTCAAGAGACTTGC+CGG | - | chr7_2:48610945-48610964 | None:intergenic | 45.0% | |
| TCTTGGATGTTGTTCGTGGA+TGG | + | chr7_2:48610986-48611005 | Msa1060430:CDS | 45.0% | |
| ! | AATTCATCATCTGGAGTGGC+TGG | + | chr7_2:48611188-48611207 | Msa1060430:CDS | 45.0% |
| ! | ATTCATCATCTGGAGTGGCT+GGG | + | chr7_2:48611189-48611208 | Msa1060430:CDS | 45.0% |
| !! | GTCAAGTTTAGAGTTGGTGG+AGG | + | chr7_2:48611213-48611232 | Msa1060430:CDS | 45.0% |
| TCACACTTGAGGGCAGAATT+TGG | + | chr7_2:48611456-48611475 | Msa1060430:intron | 45.0% | |
| GTACCTTCACATCTTGAGGA+TGG | - | chr7_2:48612132-48612151 | None:intergenic | 45.0% | |
| CTCAGTACCTTCACATCTTG+AGG | - | chr7_2:48612136-48612155 | None:intergenic | 45.0% | |
| ATACAAGACTTGGATAGCGC+TGG | + | chr7_2:48612294-48612313 | Msa1060430:CDS | 45.0% | |
| TACAAGACTTGGATAGCGCT+GGG | + | chr7_2:48612295-48612314 | Msa1060430:CDS | 45.0% | |
| AGGAATGCAATAACGGTCCA+AGG | - | chr7_2:48612343-48612362 | None:intergenic | 45.0% | |
| CAAGGGCAATAAATGCAGCA+AGG | - | chr7_2:48612363-48612382 | None:intergenic | 45.0% | |
| !!! | AAAGAAAAAATATTTTAAAA+AGG | - | chr7_2:48611694-48611713 | None:intergenic | 5.0% |
| !!! | AAAGAAAAAATATTTTAAAA+AGG | - | chr7_2:48611694-48611713 | None:intergenic | 5.0% |
| CCAGCCACCCTTTGTATCTT+TGG | - | chr7_2:48610692-48610711 | None:intergenic | 50.0% | |
| CCAAAGATACAAAGGGTGGC+TGG | + | chr7_2:48610689-48610708 | Msa1060430:CDS | 50.0% | |
| GGCAAGTCTCTTGAAGGCTT+TGG | + | chr7_2:48610944-48610963 | Msa1060430:CDS | 50.0% | |
| GCTGTCTTGGATGTTGTTCG+TGG | + | chr7_2:48610982-48611001 | Msa1060430:CDS | 50.0% | |
| ! | CTGGGCGTCAAGTTTAGAGT+TGG | + | chr7_2:48611207-48611226 | Msa1060430:CDS | 50.0% |
| ! | GGCGTCAAGTTTAGAGTTGG+TGG | + | chr7_2:48611210-48611229 | Msa1060430:CDS | 50.0% |
| !! | GAGTTGGTGGAGGAAAGAGA+AGG | + | chr7_2:48611223-48611242 | Msa1060430:CDS | 50.0% |
| CGTCACTACATCCAAGTCCA+AGG | + | chr7_2:48611324-48611343 | Msa1060430:CDS | 50.0% | |
| CGACCATCCTCAAGATGTGA+AGG | + | chr7_2:48612126-48612145 | Msa1060430:CDS | 50.0% | |
| !!! | GTGCACCTTTTGGAGTGATG+AGG | + | chr7_2:48612171-48612190 | Msa1060430:CDS | 50.0% |
| ATGTTTACGGTTCACCCGAC+TGG | + | chr7_2:48612403-48612422 | Msa1060430:CDS | 50.0% | |
| CCAGCCACCCTTTGTATCTT+TGG | - | chr7_2:48610692-48610711 | None:intergenic | 50.0% | |
| CCAAAGATACAAAGGGTGGC+TGG | + | chr7_2:48610689-48610708 | Msa1060430:CDS | 50.0% | |
| GGCAAGTCTCTTGAAGGCTT+TGG | + | chr7_2:48610944-48610963 | Msa1060430:CDS | 50.0% | |
| GCTGTCTTGGATGTTGTTCG+TGG | + | chr7_2:48610982-48611001 | Msa1060430:CDS | 50.0% | |
| ! | CTGGGCGTCAAGTTTAGAGT+TGG | + | chr7_2:48611207-48611226 | Msa1060430:CDS | 50.0% |
| ! | GGCGTCAAGTTTAGAGTTGG+TGG | + | chr7_2:48611210-48611229 | Msa1060430:CDS | 50.0% |
| !! | GAGTTGGTGGAGGAAAGAGA+AGG | + | chr7_2:48611223-48611242 | Msa1060430:CDS | 50.0% |
| CGTCACTACATCCAAGTCCA+AGG | + | chr7_2:48611324-48611343 | Msa1060430:CDS | 50.0% | |
| CGACCATCCTCAAGATGTGA+AGG | + | chr7_2:48612126-48612145 | Msa1060430:CDS | 50.0% | |
| !!! | GTGCACCTTTTGGAGTGATG+AGG | + | chr7_2:48612171-48612190 | Msa1060430:CDS | 50.0% |
| ATGTTTACGGTTCACCCGAC+TGG | + | chr7_2:48612403-48612422 | Msa1060430:CDS | 50.0% | |
| GATTGCGGCCAGTATTCTCG+AGG | - | chr7_2:48610844-48610863 | None:intergenic | 55.0% | |
| TGTTATCCCCGAGTGACACC+GGG | - | chr7_2:48611671-48611690 | None:intergenic | 55.0% | |
| GTGTTATCCCCGAGTGACAC+CGG | - | chr7_2:48611672-48611691 | None:intergenic | 55.0% | |
| GATTGCGGCCAGTATTCTCG+AGG | - | chr7_2:48610844-48610863 | None:intergenic | 55.0% | |
| TGTTATCCCCGAGTGACACC+GGG | - | chr7_2:48611671-48611690 | None:intergenic | 55.0% | |
| GTGTTATCCCCGAGTGACAC+CGG | - | chr7_2:48611672-48611691 | None:intergenic | 55.0% | |
| !! | CCTTAACCCCCGGTGTCACT+CGG | + | chr7_2:48611660-48611679 | Msa1060430:intron | 60.0% |
| !! | CTTAACCCCCGGTGTCACTC+GGG | + | chr7_2:48611661-48611680 | Msa1060430:intron | 60.0% |
| !! | TTAACCCCCGGTGTCACTCG+GGG | + | chr7_2:48611662-48611681 | Msa1060430:intron | 60.0% |
| TTATCCCCGAGTGACACCGG+GGG | - | chr7_2:48611669-48611688 | None:intergenic | 60.0% | |
| GTTATCCCCGAGTGACACCG+GGG | - | chr7_2:48611670-48611689 | None:intergenic | 60.0% | |
| !! | CCTTAACCCCCGGTGTCACT+CGG | + | chr7_2:48611660-48611679 | Msa1060430:intron | 60.0% |
| !! | CTTAACCCCCGGTGTCACTC+GGG | + | chr7_2:48611661-48611680 | Msa1060430:intron | 60.0% |
| !! | TTAACCCCCGGTGTCACTCG+GGG | + | chr7_2:48611662-48611681 | Msa1060430:intron | 60.0% |
| TTATCCCCGAGTGACACCGG+GGG | - | chr7_2:48611669-48611688 | None:intergenic | 60.0% | |
| GTTATCCCCGAGTGACACCG+GGG | - | chr7_2:48611670-48611689 | None:intergenic | 60.0% | |
| CCGAGTGACACCGGGGGTTA+AGG | - | chr7_2:48611663-48611682 | None:intergenic | 65.0% | |
| CCGAGTGACACCGGGGGTTA+AGG | - | chr7_2:48611663-48611682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 48610500 | 48612432 | 48610500 | ID=Msa1060430;Name=Msa1060430 |
| chr7_2 | mRNA | 48610500 | 48612432 | 48610500 | ID=Msa1060430-mRNA-1;Parent=Msa1060430;Name=Msa1060430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=111|0|0.5|1|1|1|2|0|448 |
| chr7_2 | exon | 48610500 | 48611345 | 48610500 | ID=Msa1060430-mRNA-1:exon:8752;Parent=Msa1060430-mRNA-1 |
| chr7_2 | exon | 48611821 | 48612432 | 48611821 | ID=Msa1060430-mRNA-1:exon:8753;Parent=Msa1060430-mRNA-1 |
| chr7_2 | five_prime_UTR | 48610500 | 48610610 | 48610500 | ID=Msa1060430-mRNA-1:five_prime_utr;Parent=Msa1060430-mRNA-1 |
| chr7_2 | CDS | 48610611 | 48611345 | 48610611 | ID=Msa1060430-mRNA-1:cds;Parent=Msa1060430-mRNA-1 |
| chr7_2 | CDS | 48611821 | 48612432 | 48611821 | ID=Msa1060430-mRNA-1:cds;Parent=Msa1060430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
