AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961610 MtrunA17_Chr6g0481091 99.163 239 2 0 1 239 1 239 0.0 499
Msa0961610 MtrunA17_Chr3g0109821 75.309 162 39 1 1 161 1 162 1.14e-89 278
Msa0961610 MtrunA17_Chr5g0433781 74.375 160 41 0 1 160 1 160 9.99e-86 267
Msa0961610 MtrunA17_Chr2g0309891 71.519 158 44 1 1 157 1 158 2.94e-83 252
Msa0961610 MtrunA17_Chr5g0400461 63.068 176 55 2 1 169 1 173 5.30e-75 230
Msa0961610 MtrunA17_Chr4g0054791 63.750 160 55 1 1 157 1 160 5.21e-70 217
Msa0961610 MtrunA17_Chr3g0130101 47.805 205 98 2 8 205 9 211 3.61e-61 196
Msa0961610 MtrunA17_Chr1g0201021 59.006 161 66 0 8 168 21 181 5.51e-61 201
Msa0961610 MtrunA17_Chr3g0128151 47.748 222 107 2 1 218 17 233 1.17e-60 200
Msa0961610 MtrunA17_Chr4g0017921 57.051 156 63 2 5 159 7 159 4.52e-60 192
Msa0961610 MtrunA17_Chr5g0417791 50.000 188 87 3 6 189 3 187 8.35e-60 189
Msa0961610 MtrunA17_Chr4g0018391 52.381 168 75 3 6 170 7 172 1.08e-59 191
Msa0961610 MtrunA17_Chr1g0200561 57.237 152 62 2 6 156 19 168 1.57e-59 191
Msa0961610 MtrunA17_Chr3g0128111 46.890 209 103 2 9 217 45 245 6.66e-59 186
Msa0961610 MtrunA17_Chr5g0428991 46.352 233 111 3 6 238 25 243 9.55e-59 196
Msa0961610 MtrunA17_Chr4g0056541 53.289 152 68 2 6 156 7 156 1.59e-58 189
Msa0961610 MtrunA17_Chr8g0372121 48.045 179 90 2 6 183 6 182 1.75e-58 187
Msa0961610 MtrunA17_Chr2g0309331 57.051 156 61 4 4 156 8 160 2.31e-58 188
Msa0961610 MtrunA17_Chr5g0405211 55.263 152 65 2 6 156 8 157 6.32e-58 187
Msa0961610 MtrunA17_Chr4g0042561 45.729 199 98 5 6 200 9 201 9.37e-58 184
Msa0961610 MtrunA17_Chr8g0364791 54.902 153 69 0 6 158 6 158 1.15e-57 189
Msa0961610 MtrunA17_Chr3g0130731 54.487 156 65 3 6 158 7 159 9.62e-57 182
Msa0961610 MtrunA17_Chr5g0398971 54.902 153 66 3 6 156 7 158 1.25e-56 184
Msa0961610 MtrunA17_Chr1g0197351 58.025 162 62 1 4 159 40 201 1.52e-56 187
Msa0961610 MtrunA17_Chr8g0346001 47.126 174 82 2 6 169 15 188 1.76e-56 186
Msa0961610 MtrunA17_Chr2g0318081 51.592 157 74 1 1 157 11 165 1.89e-56 183
Msa0961610 MtrunA17_Chr6g0484441 47.739 199 94 5 6 200 5 197 3.99e-56 182
Msa0961610 MtrunA17_Chr8g0359921 52.830 159 71 2 1 157 9 165 7.84e-56 181
Msa0961610 MtrunA17_Chr1g0197361 57.237 152 63 2 8 158 10 160 1.08e-55 187
Msa0961610 MtrunA17_Chr7g0252971 44.271 192 81 4 4 182 6 184 2.34e-55 180
Msa0961610 MtrunA17_Chr8g0384201 52.941 153 72 0 6 158 6 158 5.39e-55 183
Msa0961610 MtrunA17_Chr2g0316971 56.051 157 63 3 6 158 23 177 1.27e-54 179
Msa0961610 MtrunA17_Chr3g0092671 57.237 152 63 2 8 158 7 157 1.31e-54 183
Msa0961610 MtrunA17_Chr2g0318101 48.889 180 77 3 6 172 15 192 3.16e-54 177
Msa0961610 MtrunA17_Chr3g0124761 46.939 196 90 5 2 194 3 187 3.20e-54 176
Msa0961610 MtrunA17_Chr2g0326361 49.405 168 77 3 6 167 14 179 3.83e-54 176
Msa0961610 MtrunA17_Chr8g0384721 53.503 157 66 4 6 158 7 160 3.85e-54 175
Msa0961610 MtrunA17_Chr6g0453451 52.147 163 74 2 6 166 20 180 2.05e-53 174
Msa0961610 MtrunA17_Chr4g0060931 53.595 153 67 2 6 156 17 167 2.52e-53 176
Msa0961610 MtrunA17_Chr3g0139331 54.194 155 65 3 6 158 11 161 9.41e-53 174
Msa0961610 MtrunA17_Chr1g0147421 54.487 156 64 4 6 158 27 178 9.68e-53 174
Msa0961610 MtrunA17_Chr6g0461661 49.689 161 75 3 3 159 15 173 1.52e-52 174
Msa0961610 MtrunA17_Chr1g0183741 41.395 215 116 4 4 214 8 216 1.80e-52 171
Msa0961610 MtrunA17_Chr3g0091921 53.896 154 67 2 6 157 16 167 4.95e-52 171
Msa0961610 MtrunA17_Chr7g0263931 49.080 163 75 3 2 158 7 167 5.80e-52 171
Msa0961610 MtrunA17_Chr6g0453131 48.235 170 76 3 6 165 15 182 1.72e-51 171
Msa0961610 MtrunA17_Chr4g0076731 52.288 153 68 3 8 159 56 204 1.98e-51 172
Msa0961610 MtrunA17_Chr7g0253011 47.222 180 84 4 4 177 15 189 2.08e-51 171
Msa0961610 MtrunA17_Chr7g0261411 52.941 153 64 3 4 154 8 154 4.41e-51 167
Msa0961610 MtrunA17_Chr4g0047841 47.159 176 66 3 6 156 15 188 8.34e-51 169
Msa0961610 MtrunA17_Chr7g0214071 53.548 155 63 3 4 156 13 160 2.22e-50 165
Msa0961610 MtrunA17_Chr3g0144271 60.294 136 49 4 5 137 22 155 8.14e-50 168
Msa0961610 MtrunA17_Chr2g0312321 47.953 171 84 3 1 170 6 172 1.96e-49 164
Msa0961610 MtrunA17_Chr8g0361731 42.105 190 96 4 8 185 16 203 3.19e-49 166
Msa0961610 MtrunA17_Chr5g0417001 48.428 159 70 3 8 156 16 172 3.85e-49 166
Msa0961610 MtrunA17_Chr7g0217721 56.489 131 55 1 4 134 17 145 8.82e-47 158
Msa0961610 MtrunA17_Chr2g0311651 46.061 165 73 3 8 157 24 187 2.60e-46 156
Msa0961610 MtrunA17_Chr7g0217711 54.962 131 57 1 4 134 17 145 5.34e-45 149
Msa0961610 MtrunA17_Chr4g0038751 44.242 165 82 3 8 169 17 174 2.11e-44 150
Msa0961610 MtrunA17_Chr2g0311661 44.848 165 75 3 8 157 23 186 4.25e-44 150
Msa0961610 MtrunA17_Chr8g0345671 51.656 151 64 5 6 153 11 155 9.52e-44 151
Msa0961610 MtrunA17_Chr5g0442771 45.963 161 73 4 8 156 20 178 2.23e-43 148
Msa0961610 MtrunA17_Chr8g0345691 50.331 151 66 5 6 153 12 156 3.65e-42 148
Msa0961610 MtrunA17_Chr8g0385991 44.785 163 77 4 6 159 14 172 1.48e-38 134
Msa0961610 MtrunA17_Chr2g0321741 49.242 132 58 3 26 157 12 134 7.57e-38 135
Msa0961610 MtrunA17_Chr2g0321631 37.037 216 118 7 7 209 5 215 1.06e-37 132
Msa0961610 MtrunA17_Chr8g0345711 48.571 140 67 4 6 142 12 149 1.58e-37 129
Msa0961610 MtrunA17_Chr4g0026141 41.875 160 86 4 6 158 5 164 4.21e-36 128
Msa0961610 MtrunA17_Chr8g0345731 42.949 156 77 4 6 156 24 172 8.47e-36 125
Msa0961610 MtrunA17_Chr7g0266701 41.718 163 85 6 5 157 3 165 6.09e-35 125
Msa0961610 MtrunA17_Chr3g0131911 42.236 161 79 3 6 156 14 170 1.50e-34 124
Msa0961610 MtrunA17_Chr3g0113001 55.556 99 41 1 61 156 18 116 3.17e-31 116
Msa0961610 MtrunA17_Chr8g0345721 38.122 181 71 7 1 144 26 202 2.47e-29 109
Msa0961610 MtrunA17_Chr4g0050701 36.875 160 83 4 6 157 11 160 2.92e-29 108
Msa0961610 MtrunA17_Chr8g0345741 36.585 164 91 4 17 177 2 155 7.43e-29 106
Msa0961610 MtrunA17_Chr3g0113031 54.444 90 37 1 71 156 3 92 2.74e-27 105
Msa0961610 MtrunA17_Chr8g0345701 40.541 148 68 5 2 132 3 147 1.04e-26 101
Msa0961610 MtrunA17_Chr7g0243371 47.619 84 42 2 56 137 12 95 3.74e-22 88.2
Msa0961610 MtrunA17_Chr8g0384351 38.065 155 74 6 2 156 6 138 4.22e-22 89.7
Msa0961610 MtrunA17_Chr7g0251651 34.437 151 93 4 6 155 18 163 1.75e-21 88.6
Msa0961610 MtrunA17_Chr7g0251661 32.692 156 98 4 2 153 6 158 3.11e-18 79.0
Msa0961610 MtrunA17_Chr3g0130321 34.848 132 76 4 4 133 5 128 3.47e-18 80.1
Msa0961610 MtrunA17_Chr7g0251671 34.884 129 76 4 6 131 10 133 6.63e-17 75.5
Msa0961610 MtrunA17_Chr3g0113011 52.083 48 23 0 4 51 17 64 5.30e-12 59.7
Msa0961610 MtrunA17_Chr7g0274971 33.117 154 89 9 12 157 11 158 6.32e-12 63.2
Msa0961610 MtrunA17_Chr1g0194791 57.778 45 18 1 8 51 48 92 9.84e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961610 AT3G17730.1 75.934 241 44 5 1 228 1 240 2.25e-130 368
Msa0961610 AT1G65910.1 56.667 240 85 3 1 221 1 240 1.95e-92 284
Msa0961610 AT5G17260.1 59.244 238 69 6 1 217 1 231 5.15e-91 276
Msa0961610 AT3G03200.1 77.707 157 34 1 1 156 1 157 2.05e-88 270
Msa0961610 AT1G54330.1 72.611 157 40 1 1 157 1 154 2.63e-79 241
Msa0961610 AT5G46590.1 64.103 156 54 2 6 159 6 161 7.16e-71 219
Msa0961610 AT4G17980.1 62.733 161 56 2 1 157 1 161 9.67e-70 215
Msa0961610 AT4G17980.2 62.733 161 56 2 1 157 1 161 1.95e-69 215
Msa0961610 AT5G46590.2 67.391 138 40 2 6 142 6 139 2.22e-66 207
Msa0961610 AT3G10480.2 61.635 159 61 0 1 159 22 180 2.40e-66 212
Msa0961610 AT3G10490.1 63.226 155 56 1 6 159 27 181 6.03e-66 204
Msa0961610 AT3G10480.1 61.875 160 60 1 1 159 22 181 1.29e-65 210
Msa0961610 AT1G32510.1 55.080 187 70 3 6 184 6 186 3.09e-65 204
Msa0961610 AT3G10490.2 62.420 157 58 1 4 159 25 181 3.62e-64 206
Msa0961610 AT3G10500.1 58.929 168 67 2 2 168 5 171 9.96e-63 205
Msa0961610 AT5G04410.1 57.485 167 71 0 2 168 5 171 1.07e-62 205
Msa0961610 AT4G35580.3 57.407 162 64 1 6 162 9 170 5.82e-62 202
Msa0961610 AT4G35580.1 57.407 162 64 1 6 162 9 170 5.97e-62 202
Msa0961610 AT4G35580.2 57.407 162 64 1 6 162 9 170 6.07e-62 202
Msa0961610 AT1G33060.1 58.333 156 65 0 1 156 19 174 2.01e-61 204
Msa0961610 AT1G33060.2 58.333 156 65 0 1 156 19 174 2.09e-61 204
Msa0961610 AT1G69490.1 47.644 191 94 3 6 192 9 197 3.28e-61 193
Msa0961610 AT4G10350.1 49.727 183 91 1 5 186 8 190 1.38e-60 194
Msa0961610 AT3G10480.3 52.332 193 58 2 1 159 22 214 1.42e-60 199
Msa0961610 AT5G64060.1 53.571 168 78 0 1 168 1 168 3.84e-59 191
Msa0961610 AT1G12260.2 53.947 152 67 2 6 156 7 156 1.01e-58 189
Msa0961610 AT1G71930.2 48.500 200 94 5 5 200 8 202 1.10e-58 189
Msa0961610 AT1G71930.1 48.500 200 94 5 5 200 8 202 1.10e-58 189
Msa0961610 AT1G62700.1 55.263 152 65 2 6 156 7 156 2.00e-58 190
Msa0961610 AT1G62700.2 55.263 152 65 2 6 156 7 156 2.00e-58 190
Msa0961610 AT1G12260.1 53.947 152 67 2 6 156 7 156 2.36e-58 190
Msa0961610 AT1G33280.1 54.487 156 67 2 5 159 7 159 3.47e-58 187
Msa0961610 AT5G09330.5 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0961610 AT5G09330.2 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0961610 AT5G09330.4 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0961610 AT5G09330.3 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0961610 AT5G09330.1 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0961610 AT2G24430.2 59.740 154 57 3 5 156 15 165 5.42e-58 186
Msa0961610 AT2G24430.1 59.740 154 57 3 5 156 15 165 5.42e-58 186
Msa0961610 AT2G18060.3 54.430 158 67 3 1 156 4 158 7.69e-58 187
Msa0961610 AT2G18060.1 54.430 158 67 3 1 156 4 158 7.69e-58 187
Msa0961610 AT3G61910.1 43.939 198 97 2 6 189 11 208 1.72e-57 186
Msa0961610 AT4G36160.1 55.556 153 63 3 6 156 10 159 1.98e-57 187
Msa0961610 AT4G36160.3 55.556 153 63 3 6 156 10 159 1.98e-57 187
Msa0961610 AT4G36160.2 55.556 153 63 3 6 156 14 163 2.21e-57 187
Msa0961610 AT5G24590.2 47.895 190 97 2 1 188 8 197 2.55e-57 189
Msa0961610 AT1G34190.1 55.280 161 72 0 8 168 18 178 5.63e-57 190
Msa0961610 AT1G79580.3 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0961610 AT1G79580.5 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0961610 AT1G79580.4 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0961610 AT1G79580.2 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0961610 AT1G79580.1 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0961610 AT5G66300.1 56.494 154 63 3 5 156 11 162 7.25e-57 183
Msa0961610 AT1G76420.1 52.907 172 76 3 5 174 21 189 7.77e-57 184
Msa0961610 AT2G46770.1 44.843 223 98 7 6 207 16 234 1.06e-56 185
Msa0961610 AT5G39610.1 54.777 157 67 2 4 158 18 172 2.62e-56 181
Msa0961610 AT1G34180.3 54.037 161 74 0 8 168 18 178 2.82e-56 186
Msa0961610 AT1G61110.1 51.515 165 65 3 6 157 16 178 8.38e-56 181
Msa0961610 AT3G18400.1 54.605 152 66 2 5 156 4 152 8.99e-56 181
Msa0961610 AT5G07680.2 56.129 155 64 2 6 158 3 155 1.06e-55 181
Msa0961610 AT1G34180.1 54.037 161 74 0 8 168 18 178 1.26e-55 187
Msa0961610 AT5G07680.1 56.129 155 64 2 6 158 17 169 1.42e-55 181
Msa0961610 AT4G27410.2 49.359 156 77 1 1 156 9 162 5.27e-55 178
Msa0961610 AT3G15500.1 50.641 156 75 1 1 156 9 162 5.29e-55 179
Msa0961610 AT3G15170.1 55.000 160 66 3 6 161 20 177 6.12e-55 179
Msa0961610 AT3G04070.2 49.091 165 70 3 5 157 9 171 1.08e-54 179
Msa0961610 AT1G32770.1 50.617 162 69 2 6 156 16 177 1.50e-54 179
Msa0961610 AT5G61430.1 54.839 155 66 2 6 158 16 168 1.70e-54 178
Msa0961610 AT3G29035.1 54.902 153 65 2 4 154 22 172 4.89e-54 176
Msa0961610 AT1G52890.1 50.000 156 76 1 1 156 9 162 6.23e-54 176
Msa0961610 AT3G04070.1 46.667 180 66 4 5 156 9 186 1.09e-53 177
Msa0961610 AT3G12977.1 47.674 172 87 2 1 171 13 182 1.49e-53 174
Msa0961610 AT1G01720.1 52.866 157 67 3 6 158 7 160 1.67e-53 174
Msa0961610 AT5G62380.2 50.000 156 75 2 2 156 3 156 2.23e-53 176
Msa0961610 AT5G62380.1 50.000 156 75 2 2 156 3 156 2.23e-53 176
Msa0961610 AT3G49530.2 50.955 157 76 1 1 156 8 164 2.95e-53 177
Msa0961610 AT5G08790.1 51.235 162 71 3 2 158 3 161 4.17e-53 173
Msa0961610 AT1G34180.4 50.289 173 74 1 8 168 18 190 4.97e-53 177
Msa0961610 AT3G49530.1 50.955 157 76 1 1 156 8 164 5.77e-53 177
Msa0961610 AT1G34180.2 50.289 173 74 1 8 168 18 190 1.80e-52 178
Msa0961610 AT1G77450.1 39.167 240 132 6 6 237 10 243 2.88e-52 170
Msa0961610 AT5G18270.2 54.140 157 67 3 4 157 19 173 3.57e-52 172
Msa0961610 AT5G53950.1 53.125 160 69 3 6 161 17 174 6.27e-52 172
Msa0961610 AT5G18270.1 53.503 157 68 3 4 157 19 173 8.51e-52 171
Msa0961610 AT2G02450.1 50.980 153 70 3 8 159 53 201 1.53e-51 172
Msa0961610 AT4G27410.3 45.614 171 78 2 1 156 9 179 1.74e-51 170
Msa0961610 AT2G02450.2 50.980 153 70 3 8 159 53 201 2.03e-51 172
Msa0961610 AT5G63790.1 39.914 233 116 6 4 222 48 270 2.46e-51 169
Msa0961610 AT5G63790.2 39.914 233 116 6 4 222 58 280 2.66e-51 169
Msa0961610 AT1G32870.2 54.217 166 72 2 5 168 9 172 8.55e-51 173
Msa0961610 AT1G56010.2 47.458 177 81 5 1 170 14 185 1.08e-50 168
Msa0961610 AT1G32870.1 54.217 166 72 2 5 168 9 172 1.24e-50 173
Msa0961610 AT3G15510.1 47.953 171 74 3 10 167 21 189 1.34e-50 169
Msa0961610 AT1G32870.3 54.217 166 72 2 5 168 45 208 1.97e-50 173
Msa0961610 AT2G33480.1 50.993 151 69 1 6 156 15 160 5.66e-50 164
Msa0961610 AT3G04060.1 52.532 158 70 3 4 158 18 173 6.90e-50 166
Msa0961610 AT5G22290.1 50.685 146 65 2 8 153 23 161 1.47e-49 166
Msa0961610 AT1G26870.1 42.932 191 96 3 6 185 16 204 3.69e-49 166
Msa0961610 AT5G39820.1 41.818 220 96 6 8 203 22 233 4.11e-49 164
Msa0961610 AT2G33480.2 50.331 151 68 2 6 156 15 158 3.15e-48 160
Msa0961610 AT3G44290.2 51.370 146 63 3 8 153 16 153 1.18e-47 157
Msa0961610 AT2G27300.1 49.032 155 71 2 1 155 9 155 1.19e-47 160
Msa0961610 AT5G13180.1 51.634 153 66 3 6 156 14 160 4.68e-47 156
Msa0961610 AT3G44290.1 51.370 146 63 3 8 153 16 153 7.49e-47 158
Msa0961610 AT4G28530.1 50.000 170 59 6 6 156 10 172 1.52e-46 158
Msa0961610 AT2G17040.1 42.564 195 93 6 8 190 8 195 1.76e-46 155
Msa0961610 AT2G43000.1 48.667 150 74 2 8 156 20 167 3.46e-46 155
Msa0961610 AT1G52880.1 50.625 160 65 4 10 157 21 178 6.49e-46 155
Msa0961610 AT5G04395.1 50.000 142 57 2 6 133 28 169 3.84e-42 142
Msa0961610 AT3G12977.2 51.818 110 52 1 63 171 20 129 1.09e-36 129
Msa0961610 AT3G12910.1 43.373 166 74 6 8 156 23 185 2.51e-35 127
Msa0961610 AT5G61430.2 58.163 98 39 1 63 158 8 105 6.35e-35 125
Msa0961610 AT4G10350.2 45.968 124 67 0 63 186 20 143 9.87e-35 126
Msa0961610 AT1G56010.1 51.754 114 46 3 63 170 8 118 2.23e-33 121
Msa0961610 AT4G01550.1 41.146 192 97 8 9 194 7 188 4.99e-32 122
Msa0961610 AT5G22380.1 39.490 157 88 4 9 158 8 164 3.31e-31 115
Msa0961610 AT4G01520.1 43.939 132 69 3 7 133 5 136 8.02e-31 115
Msa0961610 AT3G44350.2 37.975 158 93 4 6 158 5 162 4.92e-30 112
Msa0961610 AT2G33480.3 51.042 96 47 0 61 156 8 103 6.64e-30 111
Msa0961610 AT4G01540.3 43.077 130 69 3 9 133 7 136 9.64e-29 112
Msa0961610 AT4G01540.4 33.690 187 103 6 9 190 7 177 1.32e-28 111
Msa0961610 AT4G01540.2 43.077 130 69 3 9 133 7 136 1.56e-28 112
Msa0961610 AT4G01540.1 43.077 130 69 3 9 133 7 136 1.73e-28 112
Msa0961610 AT4G28530.2 50.909 110 34 3 6 98 10 116 3.87e-28 109
Msa0961610 AT3G10490.4 62.500 80 29 1 81 159 2 81 3.80e-27 107
Msa0961610 AT3G10490.3 62.500 80 29 1 81 159 2 81 3.80e-27 107
Msa0961610 AT3G44350.1 41.985 131 72 3 6 132 5 135 6.03e-27 102
Msa0961610 AT3G04420.2 36.774 155 91 3 7 159 4 153 1.21e-26 104
Msa0961610 AT1G02230.1 40.789 152 78 7 7 153 4 148 1.28e-26 105
Msa0961610 AT3G04420.1 36.774 155 91 3 7 159 4 153 2.80e-26 104
Msa0961610 AT5G64530.1 33.702 181 88 6 4 168 1 165 4.57e-26 100
Msa0961610 AT5G64530.2 39.552 134 65 4 4 135 1 120 1.71e-25 98.2
Msa0961610 AT1G02250.1 36.601 153 83 5 7 153 4 148 1.94e-23 97.4
Msa0961610 AT1G01010.1 38.462 156 77 5 9 153 6 153 3.78e-23 97.4
Msa0961610 AT3G56530.1 31.373 153 100 3 4 154 50 199 2.29e-22 93.6
Msa0961610 AT1G02220.1 35.484 155 90 4 7 159 4 150 9.61e-22 93.2
Msa0961610 AT2G43000.2 46.591 88 46 1 70 156 2 89 1.32e-20 86.7
Msa0961610 AT3G55210.1 31.481 162 93 4 6 154 11 167 1.89e-20 87.8
Msa0961610 AT2G18060.2 51.389 72 31 2 86 156 2 70 7.92e-19 83.6
Msa0961610 AT5G22290.2 50.746 67 27 1 87 153 2 62 1.82e-16 76.3
Msa0961610 AT5G50820.1 33.333 132 74 4 6 133 17 138 2.42e-16 75.1
Msa0961610 AT5G14000.2 31.538 130 83 2 6 133 15 140 3.57e-15 70.9
Msa0961610 AT5G14000.1 29.032 155 101 3 6 158 15 162 5.90e-15 71.6
Msa0961610 AT3G04430.1 33.835 133 74 5 12 132 6 136 5.71e-14 68.6

Find 69 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACCAATAGGTCTATTT+TGG 0.144865 6_3:+83693353 None:intergenic
TTGGATTACCACCAGGTTTC+AGG 0.179522 6_3:-83694403 Msa0961610:CDS
TTTGGTGGGTGGACTTGTTT+AGG 0.187045 6_3:-83688985 Msa0961610:three_prime_UTR
TTCACACTCATTATTGATTA+TGG 0.195935 6_3:+83689481 None:intergenic
TACTTATAAATTGGTGATAA+TGG 0.197648 6_3:-83689018 Msa0961610:three_prime_UTR
GATGATGCTCCTAGTATTTC+TGG 0.199026 6_3:+83689449 None:intergenic
TTATTATTATACTTATAAAT+TGG 0.252215 6_3:-83689027 Msa0961610:three_prime_UTR
CTATTTGTTCTAAATCCATT+AGG 0.266100 6_3:+83693430 None:intergenic
AAATGGAATTTGTTCTGATA+TGG 0.288311 6_3:-83689552 Msa0961610:CDS
TGTTTAGGGGTCATATTATA+AGG 0.288570 6_3:-83688970 Msa0961610:three_prime_UTR
TTGGTGGGTGGACTTGTTTA+GGG 0.291301 6_3:-83688984 Msa0961610:three_prime_UTR
CTGTTACTAATTAACAGTTT+TGG 0.306587 6_3:+83689063 None:intergenic
TATTTGTTCTAAATCCATTA+GGG 0.345822 6_3:+83693431 None:intergenic
GATAATGGTTTGGTTTGGTT+TGG 0.347194 6_3:-83689003 Msa0961610:three_prime_UTR
ATGGTTTGGTTTGGTTTGGT+GGG 0.349282 6_3:-83688999 Msa0961610:three_prime_UTR
AATGGTTTGGTTTGGTTTGG+TGG 0.363053 6_3:-83689000 Msa0961610:three_prime_UTR
TCATGCCAAAATAGACCTAT+TGG 0.366665 6_3:-83693358 Msa0961610:CDS
GAGCAACAAGAGCAGGATAC+TGG 0.370822 6_3:-83693408 Msa0961610:CDS
CTCAAGGAATTCGAACTGAT+TGG 0.371866 6_3:-83693297 Msa0961610:CDS
TGAGGACAACACTGGATTAC+AGG 0.376792 6_3:-83693239 Msa0961610:intron
GTTTGGTTTGGTTTGGTGGG+TGG 0.387723 6_3:-83688996 Msa0961610:three_prime_UTR
ATAAATTGGTGATAATGGTT+TGG 0.412402 6_3:-83689013 Msa0961610:three_prime_UTR
AAGACATTGGTTTACTATAG+AGG 0.419530 6_3:-83693328 Msa0961610:CDS
GCATAATATATGCAAGGTCT+AGG 0.422001 6_3:+83689130 None:intergenic
AGGAAGACAAAGATGATTCA+TGG 0.428096 6_3:-83689412 Msa0961610:CDS
TTGTCAATTATTATCTAAAG+AGG 0.436603 6_3:-83694358 Msa0961610:CDS
CATTTGTAAAGATCAACTTC+AGG 0.441657 6_3:+83694299 None:intergenic
ATCAATGAATATTTGAAAGC+TGG 0.444854 6_3:-83689262 Msa0961610:three_prime_UTR
TCAAGGAATTCGAACTGATT+GGG 0.449710 6_3:-83693296 Msa0961610:CDS
GCAGGATACTGGAAATCTAC+TGG 0.450653 6_3:-83693397 Msa0961610:CDS
TCTTTACAAATGTGAACCTT+GGG 0.457920 6_3:-83694288 Msa0961610:CDS
TTGACAAGTTCTTCATCAGT+TGG 0.460855 6_3:+83694374 None:intergenic
ATCTTTACAAATGTGAACCT+TGG 0.461628 6_3:-83694289 Msa0961610:CDS
AATGTCTTCTTCATACCAAT+AGG 0.469539 6_3:+83693343 None:intergenic
ACAAATAGAGCAACAAGAGC+AGG 0.482385 6_3:-83693415 Msa0961610:CDS
CGAGACCGAAAATACCCTAA+TGG 0.486072 6_3:-83693445 Msa0961610:CDS
GAGAAAATTATGTCACCAGT+TGG 0.506414 6_3:-83694422 Msa0961610:exon
CCTTGTGAGCATAGCTCAGT+TGG 0.511561 6_3:+83689097 None:intergenic
TTGGTGATAATGGTTTGGTT+TGG 0.514482 6_3:-83689008 Msa0961610:three_prime_UTR
ATTTCTTCACCACCAACCAT+TGG 0.521704 6_3:+83689347 None:intergenic
AAACCTGGTGGTAATCCAAC+TGG 0.525177 6_3:+83694407 None:intergenic
ATCATCTTCATGTTTAGAAG+AGG 0.530767 6_3:-83689432 Msa0961610:CDS
TACCACTCTGGATCTCTACT+TGG 0.542100 6_3:+83693481 None:intergenic
TGAGCATAGCTCAGTTGGTA+GGG 0.542895 6_3:+83689102 None:intergenic
CATAATATATGCAAGGTCTA+GGG 0.551697 6_3:+83689131 None:intergenic
TCTAATACACCAATGGTTGG+TGG 0.556914 6_3:-83689356 Msa0961610:CDS
TGTGAACCTTGGGAATTAGC+AGG 0.558601 6_3:-83694278 Msa0961610:intron
CCAACTGAGCTATGCTCACA+AGG 0.559645 6_3:-83689097 Msa0961610:three_prime_UTR
TATCTAAAGAGGAAAATCAA+TGG 0.563389 6_3:-83694347 Msa0961610:CDS
GTATTCTTCTAATACACCAA+TGG 0.568650 6_3:-83689363 Msa0961610:CDS
GACTTGATGAAAATCAAGAT+TGG 0.571976 6_3:-83689290 Msa0961610:three_prime_UTR
TATTGGTATGAAGAAGACAT+TGG 0.580527 6_3:-83693341 Msa0961610:CDS
GTGAGCATAGCTCAGTTGGT+AGG 0.582093 6_3:+83689101 None:intergenic
ATGATGTCTCCAGAAATACT+AGG 0.584004 6_3:-83689458 Msa0961610:CDS
TCTTCTAATACACCAATGGT+TGG 0.588359 6_3:-83689359 Msa0961610:CDS
GACAATGCATAATATATGCA+AGG 0.595528 6_3:+83689124 None:intergenic
TATGGACCTGCTAATTCCCA+AGG 0.609085 6_3:+83694272 None:intergenic
TCACCAGTTGGATTACCACC+AGG 0.611908 6_3:-83694410 Msa0961610:CDS
TGGTGGGTGGACTTGTTTAG+GGG 0.619419 6_3:-83688983 Msa0961610:three_prime_UTR
AAAGAATGTGAGGACAACAC+TGG 0.622267 6_3:-83693247 Msa0961610:CDS
CAATCAGTTCGAATTCCTTG+AGG 0.624122 6_3:+83693298 None:intergenic
TTGATGAAAATCAAGATTGG+TGG 0.637670 6_3:-83689287 Msa0961610:three_prime_UTR
TATAGAGGAAGAGCTCCTCA+AGG 0.649242 6_3:-83693313 Msa0961610:CDS
AATTCATTACAGAAGATGCA+TGG 0.663634 6_3:-83689385 Msa0961610:CDS
TCTTGATGATAAAGAATGTG+AGG 0.663674 6_3:-83693257 Msa0961610:CDS
GTTGGATGAAACCTGAAACC+TGG 0.669872 6_3:+83694392 None:intergenic
TGCCAAGTAGAGATCCAGAG+TGG 0.689238 6_3:-83693483 Msa0961610:CDS
TCTGATATGGAAGAGCAACA+AGG 0.702776 6_3:-83689539 Msa0961610:CDS
GGATGAAACCTGAAACCTGG+TGG 0.791381 6_3:+83694395 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATATTTTAACATTA+AGG + chr6_3:83690767-83690786 None:intergenic 10.0%
!! ATTAAAAACCAAAAATAATT+TGG + chr6_3:83691553-83691572 None:intergenic 10.0%
!!! TTAATTTTTTTTAGTGATAT+TGG - chr6_3:83692516-83692535 Msa0961610:intron 10.0%
!! AATTAATAATGAAATAAACA+TGG - chr6_3:83692863-83692882 Msa0961610:intron 10.0%
!! AAAAAACAAAAAAAAAGTTA+TGG + chr6_3:83694249-83694268 None:intergenic 10.0%
!!! TAACTTTTTTTTTGTTTTTT+TGG - chr6_3:83694249-83694268 Msa0961610:intron 10.0%
!! AATTACAGAAATAAAGAATA+TGG + chr6_3:83689170-83689189 None:intergenic 15.0%
!! TTCTAATGGAAATTAATATT+TGG - chr6_3:83689196-83689215 Msa0961610:three_prime_UTR 15.0%
!! AAATGTCATATTATTAAACA+TGG - chr6_3:83689363-83689382 Msa0961610:CDS 15.0%
!!! TGAAAATTGTTTAATTTCAT+AGG - chr6_3:83689409-83689428 Msa0961610:CDS 15.0%
!! CTTAAATTAATTTATTCTGA+TGG - chr6_3:83689879-83689898 Msa0961610:intron 15.0%
!!! TATAGTTGATAGAATTTTAT+TGG - chr6_3:83690634-83690653 Msa0961610:intron 15.0%
!!! ATAGTTGATAGAATTTTATT+GGG - chr6_3:83690635-83690654 Msa0961610:intron 15.0%
!! TTTGACTAATTATAATTTCA+GGG + chr6_3:83690678-83690697 None:intergenic 15.0%
!!! TTTTGACTAATTATAATTTC+AGG + chr6_3:83690679-83690698 None:intergenic 15.0%
!!! TTAAACATCCAAATTATTTT+TGG - chr6_3:83691542-83691561 Msa0961610:intron 15.0%
!! ATTCAATTAAAAAAGTGATA+TGG + chr6_3:83692173-83692192 None:intergenic 15.0%
!!! TTAACTGAATTTTTTTAGAA+TGG - chr6_3:83692442-83692461 Msa0961610:intron 15.0%
!! TAATTAATAAAAGCAATGAT+AGG + chr6_3:83692499-83692518 None:intergenic 15.0%
!!! TAATCATTTAAAGCATTATT+TGG + chr6_3:83692794-83692813 None:intergenic 15.0%
!!! AAATTATCTTTAAAAGCTTA+TGG - chr6_3:83693680-83693699 Msa0961610:intron 15.0%
!! TTGTCAATTATTATCTAAAG+AGG - chr6_3:83689063-83689082 Msa0961610:three_prime_UTR 20.0%
!!! CTGTAATTTTTCATTTCTAA+TGG - chr6_3:83689182-83689201 Msa0961610:three_prime_UTR 20.0%
!!! TTAAATTTTTAGCAATATCG+AGG + chr6_3:83689530-83689549 None:intergenic 20.0%
!! TCGATATTGCTAAAAATTTA+AGG - chr6_3:83689529-83689548 Msa0961610:CDS 20.0%
!! TAAAAATTTAAGGAAATCTG+TGG - chr6_3:83689539-83689558 Msa0961610:CDS 20.0%
!!! TTCTGATGGAAATATTTTTT+TGG - chr6_3:83689893-83689912 Msa0961610:intron 20.0%
!!! TATTTGTTCTAAATCCATTA+GGG + chr6_3:83689993-83690012 None:intergenic 20.0%
!!! TTTATGTTTGATGTTTTCTA+TGG + chr6_3:83690488-83690507 None:intergenic 20.0%
!!! TAGTTGATAGAATTTTATTG+GGG - chr6_3:83690636-83690655 Msa0961610:intron 20.0%
!! ATGACAATAAGTAAGTATAT+TGG + chr6_3:83690810-83690829 None:intergenic 20.0%
!! ACAATAAACATGTACTTATA+TGG + chr6_3:83690839-83690858 None:intergenic 20.0%
!!! ACAATAACTCTTTTCATATA+GGG + chr6_3:83690871-83690890 None:intergenic 20.0%
!!! TTGAAATTTTGATACAATGA+AGG - chr6_3:83690959-83690978 Msa0961610:intron 20.0%
!! TGACTAATCATTACATATTA+AGG - chr6_3:83690989-83691008 Msa0961610:intron 20.0%
!! GACTAATCATTACATATTAA+GGG - chr6_3:83690990-83691009 Msa0961610:intron 20.0%
!! ACAAAATTCAACAATTTAGA+TGG - chr6_3:83691213-83691232 Msa0961610:intron 20.0%
!!! TGTTCAAATACATAATTTTG+AGG + chr6_3:83691424-83691443 None:intergenic 20.0%
!! TAATTATATACAGTGAAACA+AGG + chr6_3:83691503-83691522 None:intergenic 20.0%
!! TTTAACGTTGTTTAAATATG+TGG + chr6_3:83691527-83691546 None:intergenic 20.0%
!! AGAAGAAATAAAACTATACT+AGG + chr6_3:83691965-83691984 None:intergenic 20.0%
!! ATTTCAGTAAACCAAATATA+TGG - chr6_3:83692245-83692264 Msa0961610:intron 20.0%
!! TATTTAGAAGTTGAAAAATG+TGG - chr6_3:83692303-83692322 Msa0961610:intron 20.0%
!! AATTTATTTGGTTAACTAAG+TGG + chr6_3:83692363-83692382 None:intergenic 20.0%
!!! CTAGTTTTTCAGAATTTATT+TGG + chr6_3:83692375-83692394 None:intergenic 20.0%
!!! AATAAATTCTGAAAAACTAG+TGG - chr6_3:83692375-83692394 Msa0961610:intron 20.0%
!!! ATTTTTTTAGAATGGTACAA+AGG - chr6_3:83692450-83692469 Msa0961610:intron 20.0%
!!! TTTTTTTAGAATGGTACAAA+GGG - chr6_3:83692451-83692470 Msa0961610:intron 20.0%
!! TTTATTCTTGAACACAAAAA+TGG - chr6_3:83692684-83692703 Msa0961610:intron 20.0%
!! ATAATGAAATAAACATGGTA+AGG - chr6_3:83692868-83692887 Msa0961610:intron 20.0%
!! TAATGAAATAAACATGGTAA+GGG - chr6_3:83692869-83692888 Msa0961610:intron 20.0%
!!! CTAATTTTGATAAGCTTTTA+AGG + chr6_3:83693061-83693080 None:intergenic 20.0%
!! GTATGTATTATCTTAGAATT+TGG + chr6_3:83693283-83693302 None:intergenic 20.0%
!! AACATAGAATCATAATGTAT+AGG + chr6_3:83693502-83693521 None:intergenic 20.0%
!!! GTTATATGATAAAGTGTTTA+TGG + chr6_3:83693579-83693598 None:intergenic 20.0%
!! CAAAAAAAAAGTTATGGTAA+AGG + chr6_3:83694243-83694262 None:intergenic 20.0%
!!! CTTTTTTTTTGTTTTTTTGG+TGG - chr6_3:83694252-83694271 Msa0961610:intron 20.0%
!!! TACTTATAAATTGGTGATAA+TGG - chr6_3:83694403-83694422 Msa0961610:CDS 20.0%
! TATCTAAAGAGGAAAATCAA+TGG - chr6_3:83689074-83689093 Msa0961610:three_prime_UTR 25.0%
!!! GAACCATAATTTTTAGTTGA+GGG + chr6_3:83689473-83689492 None:intergenic 25.0%
!!! TGAACCATAATTTTTAGTTG+AGG + chr6_3:83689474-83689493 None:intergenic 25.0%
! AAAATTATGGTTCAGAATTG+CGG - chr6_3:83689480-83689499 Msa0961610:CDS 25.0%
! TGAGAAACTACTTCAAAATT+TGG - chr6_3:83689695-83689714 Msa0961610:intron 25.0%
!! ATGTGTATGTATTTTCCATT+AGG - chr6_3:83689849-83689868 Msa0961610:intron 25.0%
!!! TAAATCCATTAGGGTATTTT+CGG + chr6_3:83689984-83690003 None:intergenic 25.0%
!! CTATTTGTTCTAAATCCATT+AGG + chr6_3:83689994-83690013 None:intergenic 25.0%
!!! ATAGTTTTGCAACCAAAAAA+TGG - chr6_3:83690349-83690368 Msa0961610:intron 25.0%
! TACCAATAATAACTTCAACA+AGG + chr6_3:83690544-83690563 None:intergenic 25.0%
!!! TTGAAGTTTTGATACATTGA+AGG + chr6_3:83690706-83690725 None:intergenic 25.0%
! ACAATAAGTAAGTATATTGG+AGG + chr6_3:83690807-83690826 None:intergenic 25.0%
!! CACAATAACTCTTTTCATAT+AGG + chr6_3:83690872-83690891 None:intergenic 25.0%
! AAGTTGTGTAGATAATATCA+CGG + chr6_3:83691051-83691070 None:intergenic 25.0%
! GATTAATTTCGTATTGTAGA+TGG - chr6_3:83691256-83691275 Msa0961610:intron 25.0%
! ATATATACATCTGAAAATCG+TGG + chr6_3:83691359-83691378 None:intergenic 25.0%
! GAAAAAAGAGTTATGAAAGT+AGG + chr6_3:83691661-83691680 None:intergenic 25.0%
!!! GCTTTTTCAGATCAAATATA+TGG + chr6_3:83691707-83691726 None:intergenic 25.0%
!! ACCAAAAGATAAAAGAGTTT+TGG - chr6_3:83691876-83691895 Msa0961610:intron 25.0%
!! ACCAAAACTCTTTTATCTTT+TGG + chr6_3:83691880-83691899 None:intergenic 25.0%
!!! GTTTTTCACGTTCTTTTTTA+TGG + chr6_3:83691911-83691930 None:intergenic 25.0%
!!! TTACTGAAATTTTTCAGAGT+GGG + chr6_3:83692235-83692254 None:intergenic 25.0%
!!! TTTACTGAAATTTTTCAGAG+TGG + chr6_3:83692236-83692255 None:intergenic 25.0%
! TTAACTAAGTGGAAAAATAG+TGG + chr6_3:83692352-83692371 None:intergenic 25.0%
!!! TTTTTTAGAATGGTACAAAG+GGG - chr6_3:83692452-83692471 Msa0961610:intron 25.0%
! TAGATCATGAAACATAACAA+TGG + chr6_3:83692558-83692577 None:intergenic 25.0%
! ACAAAATGAAAGTGATAGAT+AGG + chr6_3:83692648-83692667 None:intergenic 25.0%
! GTTTAGTGTATAGTATCTAT+TGG + chr6_3:83692711-83692730 None:intergenic 25.0%
!! CATTTAAAGCATTATTTGGT+TGG + chr6_3:83692790-83692809 None:intergenic 25.0%
!! TTATGCCATATAAAGTATCT+AGG + chr6_3:83692837-83692856 None:intergenic 25.0%
! ACATTGATATAAGTCATGTT+TGG - chr6_3:83692896-83692915 Msa0961610:intron 25.0%
! AATTAGCTACAAACAACTTA+TGG - chr6_3:83693075-83693094 Msa0961610:intron 25.0%
! CCTATTTGGATTAACTTATT+TGG + chr6_3:83693171-83693190 None:intergenic 25.0%
! CCAAATAAGTTAATCCAAAT+AGG - chr6_3:83693168-83693187 Msa0961610:intron 25.0%
!! CTAGACATATTTCATTTTAC+AGG - chr6_3:83693227-83693246 Msa0961610:intron 25.0%
! TTAACTCAACATTGTAAAAC+TGG + chr6_3:83693253-83693272 None:intergenic 25.0%
!!! GGAAACTTTAAGATACTTTT+AGG + chr6_3:83693337-83693356 None:intergenic 25.0%
! CTAAATGTATTGTAATCAAG+TGG + chr6_3:83693358-83693377 None:intergenic 25.0%
! CAAATGTGTTAAAACCATAT+AGG + chr6_3:83693421-83693440 None:intergenic 25.0%
! TATTATGTAGTCAACAATTG+AGG + chr6_3:83693460-83693479 None:intergenic 25.0%
!! AAATGGAATTTGTTCTGATA+TGG - chr6_3:83693869-83693888 Msa0961610:intron 25.0%
!! TTCACACTCATTATTGATTA+TGG + chr6_3:83693943-83693962 None:intergenic 25.0%
! ATCAATGAATATTTGAAAGC+TGG - chr6_3:83694159-83694178 Msa0961610:intron 25.0%
!!! TTTTTTTGTTTTTTTGGTGG+TGG - chr6_3:83694255-83694274 Msa0961610:intron 25.0%
!!! CTAATTAACAGTTTTGGTAA+AGG + chr6_3:83694355-83694374 None:intergenic 25.0%
!! CTGTTACTAATTAACAGTTT+TGG + chr6_3:83694361-83694380 None:intergenic 25.0%
!!! ATAAATTGGTGATAATGGTT+TGG - chr6_3:83694408-83694427 Msa0961610:CDS 25.0%
CATTTGTAAAGATCAACTTC+AGG + chr6_3:83689125-83689144 None:intergenic 30.0%
ATCTTTACAAATGTGAACCT+TGG - chr6_3:83689132-83689151 Msa0961610:three_prime_UTR 30.0%
TCTTTACAAATGTGAACCTT+GGG - chr6_3:83689133-83689152 Msa0961610:three_prime_UTR 30.0%
ATTTCATAGGCCTAAAACTA+TGG - chr6_3:83689422-83689441 Msa0961610:CDS 30.0%
AAATTTAAGGAAATCTGTGG+TGG - chr6_3:83689542-83689561 Msa0961610:CDS 30.0%
TTACTTAGAGAGTAGTGATA+TGG + chr6_3:83689731-83689750 None:intergenic 30.0%
AATTTAAGAGCTTAGCCTAA+TGG + chr6_3:83689867-83689886 None:intergenic 30.0%
! TCATACCAATAGGTCTATTT+TGG + chr6_3:83690071-83690090 None:intergenic 30.0%
AATGTCTTCTTCATACCAAT+AGG + chr6_3:83690081-83690100 None:intergenic 30.0%
TATTGGTATGAAGAAGACAT+TGG - chr6_3:83690080-83690099 Msa0961610:intron 30.0%
!! AAGACATTGGTTTACTATAG+AGG - chr6_3:83690093-83690112 Msa0961610:intron 30.0%
! TCTTGATGATAAAGAATGTG+AGG - chr6_3:83690164-83690183 Msa0961610:intron 30.0%
! ATCCTCTACAATCAGTTTTA+CGG + chr6_3:83690298-83690317 None:intergenic 30.0%
!!! CGATCAATGAAACCATTTTT+TGG + chr6_3:83690364-83690383 None:intergenic 30.0%
TTTGTTAGCGAATTTCCATA+AGG - chr6_3:83690386-83690405 Msa0961610:intron 30.0%
GTCCTTGTTGAAGTTATTAT+TGG - chr6_3:83690539-83690558 Msa0961610:intron 30.0%
ACTAACAAAATGCACAATCA+GGG + chr6_3:83690735-83690754 None:intergenic 30.0%
TCACGGCTAACAATAAAATT+CGG + chr6_3:83691034-83691053 None:intergenic 30.0%
! TAATGTCCTCATTTTATGCT+TGG - chr6_3:83691130-83691149 Msa0961610:intron 30.0%
TCTTATCCAAGCATAAAATG+AGG + chr6_3:83691139-83691158 None:intergenic 30.0%
GATAATGACATTCAAAATCG+TGG + chr6_3:83691337-83691356 None:intergenic 30.0%
TTGTGATTAATTACGTCAGA+TGG - chr6_3:83691457-83691476 Msa0961610:intron 30.0%
AGAGTTATGAAAGTAGGTAA+AGG + chr6_3:83691655-83691674 None:intergenic 30.0%
! TTTTTCTCTCTCTTCTCTTA+TGG - chr6_3:83691984-83692003 Msa0961610:intron 30.0%
TTGTCATACAGAGATATTAG+AGG + chr6_3:83692080-83692099 None:intergenic 30.0%
AAGTGATATGGATCATAAGT+AGG + chr6_3:83692161-83692180 None:intergenic 30.0%
GATCACACAGACTATATATT+TGG - chr6_3:83692419-83692438 Msa0961610:intron 30.0%
ATTCTTCTCATAATCCATGA+AGG - chr6_3:83692588-83692607 Msa0961610:intron 30.0%
ATGAAAGTGATAGATAGGAT+AGG + chr6_3:83692643-83692662 None:intergenic 30.0%
! CTATCACTTTCATTTTGTGT+CGG - chr6_3:83692650-83692669 Msa0961610:intron 30.0%
! ATGCTTTAAATGATTAAGCC+AGG - chr6_3:83692798-83692817 Msa0961610:intron 30.0%
! TGCTTTAAATGATTAAGCCA+GGG - chr6_3:83692799-83692818 Msa0961610:intron 30.0%
!!! ATACTTTTAGGTTACTCAGA+GGG + chr6_3:83693325-83693344 None:intergenic 30.0%
TTTGTGGCATAAAGATTCAA+AGG + chr6_3:83693383-83693402 None:intergenic 30.0%
!! ATGTTACTTTAGCACTACTT+AGG - chr6_3:83693517-83693536 Msa0961610:intron 30.0%
TTCAATGACATAAACACTTG+TGG + chr6_3:83693762-83693781 None:intergenic 30.0%
AATGCAATCAAGCTCATTAA+GGG + chr6_3:83693813-83693832 None:intergenic 30.0%
ATCATCTTCATGTTTAGAAG+AGG - chr6_3:83693989-83694008 Msa0961610:intron 30.0%
AATTCATTACAGAAGATGCA+TGG - chr6_3:83694036-83694055 Msa0961610:intron 30.0%
GTATTCTTCTAATACACCAA+TGG - chr6_3:83694058-83694077 Msa0961610:intron 30.0%
GACTTGATGAAAATCAAGAT+TGG - chr6_3:83694131-83694150 Msa0961610:intron 30.0%
TTGATGAAAATCAAGATTGG+TGG - chr6_3:83694134-83694153 Msa0961610:intron 30.0%
CATAATATATGCAAGGTCTA+GGG + chr6_3:83694293-83694312 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr6_3:83694300-83694319 None:intergenic 30.0%
TGTTTAGGGGTCATATTATA+AGG - chr6_3:83694451-83694470 Msa0961610:five_prime_UTR 30.0%
GAGAAAATTATGTCACCAGT+TGG - chr6_3:83688999-83689018 Msa0961610:three_prime_UTR 35.0%
TTGACAAGTTCTTCATCAGT+TGG + chr6_3:83689050-83689069 None:intergenic 35.0%
CTGCCCTCAACTAAAAATTA+TGG - chr6_3:83689467-83689486 Msa0961610:CDS 35.0%
! TTAGCGATCGTTCTAAATTC+CGG + chr6_3:83689648-83689667 None:intergenic 35.0%
CGATCGCTAAGAACTAAAAT+AGG - chr6_3:83689658-83689677 Msa0961610:intron 35.0%
GAGTAGTGATATGGAAACTT+AGG + chr6_3:83689722-83689741 None:intergenic 35.0%
TCATGCCAAAATAGACCTAT+TGG - chr6_3:83690063-83690082 Msa0961610:intron 35.0%
TCAAGGAATTCGAACTGATT+GGG - chr6_3:83690125-83690144 Msa0961610:intron 35.0%
ATCCTCTACGGTAAACTTTA+CGG - chr6_3:83690242-83690261 Msa0961610:intron 35.0%
! GATTGTAGAGGATCCATTTT+TGG - chr6_3:83690305-83690324 Msa0961610:intron 35.0%
AGCGAATTTCCATAAGGTTA+AGG - chr6_3:83690392-83690411 Msa0961610:intron 35.0%
TATTGGGGTAATAGTCACTT+TGG - chr6_3:83690651-83690670 Msa0961610:intron 35.0%
GACTAACAAAATGCACAATC+AGG + chr6_3:83690736-83690755 None:intergenic 35.0%
GAGTTATTGTGAACATTGAG+AGG - chr6_3:83690881-83690900 Msa0961610:intron 35.0%
!!! GAGAGGTTATTTTAGTGTCA+AGG - chr6_3:83690898-83690917 Msa0961610:intron 35.0%
ACGGCTAACAATAAAATTCG+GGG + chr6_3:83691032-83691051 None:intergenic 35.0%
CACGGCTAACAATAAAATTC+GGG + chr6_3:83691033-83691052 None:intergenic 35.0%
CTACACAACTTGAAAACTCA+AGG - chr6_3:83691060-83691079 Msa0961610:intron 35.0%
!! TTGCACTCAAAACTAGTCTT+TGG - chr6_3:83691610-83691629 Msa0961610:intron 35.0%
AAAGAACGTGAAAAACTGCA+TGG - chr6_3:83691915-83691934 Msa0961610:intron 35.0%
GATATGGATCATAAGTAGGT+AGG + chr6_3:83692157-83692176 None:intergenic 35.0%
CAACAAGATGTACACGTTAA+AGG + chr6_3:83692211-83692230 None:intergenic 35.0%
GTCATGCAACTGAAAAAATG+TGG + chr6_3:83692280-83692299 None:intergenic 35.0%
! ATAAAGTATCTAGGACCTCA+TGG + chr6_3:83692828-83692847 None:intergenic 35.0%
GAGGTCCTAGATACTTTATA+TGG - chr6_3:83692829-83692848 Msa0961610:intron 35.0%
! TTTGAGATTCTGGACCTATT+TGG + chr6_3:83693185-83693204 None:intergenic 35.0%
!!! TCTAGACACTTTTGAGATTC+TGG + chr6_3:83693195-83693214 None:intergenic 35.0%
!! ATCTCAAAAGTGTCTAGAAG+TGG - chr6_3:83693197-83693216 Msa0961610:intron 35.0%
!!! GATACTTTTAGGTTACTCAG+AGG + chr6_3:83693326-83693345 None:intergenic 35.0%
TTGTCAGAGATTGTCCTATA+TGG - chr6_3:83693404-83693423 Msa0961610:CDS 35.0%
! AAGCTCATTAAGGGTTTGTT+TGG + chr6_3:83693804-83693823 None:intergenic 35.0%
CAATGCAATCAAGCTCATTA+AGG + chr6_3:83693814-83693833 None:intergenic 35.0%
TGTCGTGTGTTCAAGAAAAA+TGG - chr6_3:83693852-83693871 Msa0961610:intron 35.0%
AGGAAGACAAAGATGATTCA+TGG - chr6_3:83694009-83694028 Msa0961610:intron 35.0%
TCTTCTAATACACCAATGGT+TGG - chr6_3:83694062-83694081 Msa0961610:intron 35.0%
!!! TTGTTTTTTTGGTGGTGGTT+AGG - chr6_3:83694260-83694279 Msa0961610:intron 35.0%
!!! TGTTTTTTTGGTGGTGGTTA+GGG - chr6_3:83694261-83694280 Msa0961610:intron 35.0%
GCATAATATATGCAAGGTCT+AGG + chr6_3:83694294-83694313 None:intergenic 35.0%
!! TTGGTGATAATGGTTTGGTT+TGG - chr6_3:83694413-83694432 Msa0961610:CDS 35.0%
!! GATAATGGTTTGGTTTGGTT+TGG - chr6_3:83694418-83694437 Msa0961610:exon 35.0%
AGTTCTTGCATCAAAGACCT+TGG - chr6_3:83689320-83689339 Msa0961610:exon 40.0%
!! CCACAGTCTAAAGGTTTTAG+AGG + chr6_3:83689606-83689625 None:intergenic 40.0%
!! CCTCTAAAACCTTTAGACTG+TGG - chr6_3:83689603-83689622 Msa0961610:intron 40.0%
!! GATCCAGAGTGGTACTTTTT+CGG - chr6_3:83689949-83689968 Msa0961610:intron 40.0%
ACAAATAGAGCAACAAGAGC+AGG - chr6_3:83690006-83690025 Msa0961610:intron 40.0%
CAATCAGTTCGAATTCCTTG+AGG + chr6_3:83690126-83690145 None:intergenic 40.0%
CTCAAGGAATTCGAACTGAT+TGG - chr6_3:83690124-83690143 Msa0961610:intron 40.0%
AAAGAATGTGAGGACAACAC+TGG - chr6_3:83690174-83690193 Msa0961610:intron 40.0%
TTCGTGACTTAGATCCTCTA+CGG - chr6_3:83690230-83690249 Msa0961610:intron 40.0%
CACCGTAAAACTGATTGTAG+AGG - chr6_3:83690293-83690312 Msa0961610:intron 40.0%
CATTGCATGCCTTAACCTTA+TGG + chr6_3:83690404-83690423 None:intergenic 40.0%
ACGAGTCTAGCACTTAATCA+TGG + chr6_3:83690615-83690634 None:intergenic 40.0%
ACTAACAGAATGCACAGTCA+GGG - chr6_3:83690930-83690949 Msa0961610:intron 40.0%
CTCAAGGTTGCAATAAATGC+AGG - chr6_3:83691076-83691095 Msa0961610:intron 40.0%
TACGTCAGATGGATGATTAG+TGG - chr6_3:83691468-83691487 Msa0961610:intron 40.0%
GAAAGTAGGTAAAGGCCAAA+GGG + chr6_3:83691647-83691666 None:intergenic 40.0%
TGAAAGTAGGTAAAGGCCAA+AGG + chr6_3:83691648-83691667 None:intergenic 40.0%
!! GTACACGTTAAAGGTGTCTA+CGG + chr6_3:83692202-83692221 None:intergenic 40.0%
GGTCACACAGACCATATATT+TGG + chr6_3:83692259-83692278 None:intergenic 40.0%
GACAATCTCTGACAAGTTTG+TGG + chr6_3:83693399-83693418 None:intergenic 40.0%
AATGAGCTTGATTGCATTGC+AGG - chr6_3:83693815-83693834 Msa0961610:intron 40.0%
TCTGATATGGAAGAGCAACA+AGG - chr6_3:83693882-83693901 Msa0961610:intron 40.0%
GATGATGCTCCTAGTATTTC+TGG + chr6_3:83693975-83693994 None:intergenic 40.0%
TCTAATACACCAATGGTTGG+TGG - chr6_3:83694065-83694084 Msa0961610:intron 40.0%
ATTTCTTCACCACCAACCAT+TGG + chr6_3:83694077-83694096 None:intergenic 40.0%
!! AATGGTTTGGTTTGGTTTGG+TGG - chr6_3:83694421-83694440 Msa0961610:exon 40.0%
!! ATGGTTTGGTTTGGTTTGGT+GGG - chr6_3:83694422-83694441 Msa0961610:exon 40.0%
AAACCTGGTGGTAATCCAAC+TGG + chr6_3:83689017-83689036 None:intergenic 45.0%
TTGGATTACCACCAGGTTTC+AGG - chr6_3:83689018-83689037 Msa0961610:three_prime_UTR 45.0%
GTTGGATGAAACCTGAAACC+TGG + chr6_3:83689032-83689051 None:intergenic 45.0%
TGTGAACCTTGGGAATTAGC+AGG - chr6_3:83689143-83689162 Msa0961610:three_prime_UTR 45.0%
TATGGACCTGCTAATTCCCA+AGG + chr6_3:83689152-83689171 None:intergenic 45.0%
CATTGCAGAAAGTTGCACCA+AGG + chr6_3:83689340-83689359 None:intergenic 45.0%
! GCTAGTGCAGCCATAGTTTT+AGG + chr6_3:83689435-83689454 None:intergenic 45.0%
ATGGTTCAGAATTGCGGCTA+CGG - chr6_3:83689486-83689505 Msa0961610:CDS 45.0%
!!! GGTTTTAGAGGTCTCCTCAA+CGG + chr6_3:83689594-83689613 None:intergenic 45.0%
TACCACTCTGGATCTCTACT+TGG + chr6_3:83689943-83689962 None:intergenic 45.0%
!! TTAGGGTATTTTCGGTCTCG+CGG + chr6_3:83689976-83689995 None:intergenic 45.0%
CGAGACCGAAAATACCCTAA+TGG - chr6_3:83689976-83689995 Msa0961610:intron 45.0%
GCAGGATACTGGAAATCTAC+TGG - chr6_3:83690024-83690043 Msa0961610:intron 45.0%
TATAGAGGAAGAGCTCCTCA+AGG - chr6_3:83690108-83690127 Msa0961610:intron 45.0%
TGAGGACAACACTGGATTAC+AGG - chr6_3:83690182-83690201 Msa0961610:intron 45.0%
CACCGTAAAGTTTACCGTAG+AGG + chr6_3:83690247-83690266 None:intergenic 45.0%
!!! GAGGATCCATTTTTGGTGTG+TGG - chr6_3:83690312-83690331 Msa0961610:intron 45.0%
CACACACCACACACCAAAAA+TGG + chr6_3:83690321-83690340 None:intergenic 45.0%
GACTAACAGAATGCACAGTC+AGG - chr6_3:83690929-83690948 Msa0961610:intron 45.0%
!! GGAGAATTGCTGCTTTACGA+GGG + chr6_3:83692622-83692641 None:intergenic 45.0%
!! AGGAGAATTGCTGCTTTACG+AGG + chr6_3:83692623-83692642 None:intergenic 45.0%
! ATTAAGCCAGGGTATCCATG+AGG - chr6_3:83692810-83692829 Msa0961610:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+GGG + chr6_3:83694322-83694341 None:intergenic 45.0%
! TTTGGTGGGTGGACTTGTTT+AGG - chr6_3:83694436-83694455 Msa0961610:five_prime_UTR 45.0%
! TTGGTGGGTGGACTTGTTTA+GGG - chr6_3:83694437-83694456 Msa0961610:five_prime_UTR 45.0%
!!! CTTTATATTTTTTTATTATA+AGG - chr6_3:83692013-83692032 Msa0961610:intron 5.0%
!! AAATAAATAAAATGAAATAA+AGG - chr6_3:83692742-83692761 Msa0961610:intron 5.0%
!! AATAAATAAAATGAAATAAA+GGG - chr6_3:83692743-83692762 Msa0961610:intron 5.0%
!! TTATTATTATACTTATAAAT+TGG - chr6_3:83694394-83694413 Msa0961610:CDS 5.0%
TCACCAGTTGGATTACCACC+AGG - chr6_3:83689011-83689030 Msa0961610:three_prime_UTR 50.0%
GGATGAAACCTGAAACCTGG+TGG + chr6_3:83689029-83689048 None:intergenic 50.0%
GGTGGATGCAACTGCAATTG+TGG - chr6_3:83689560-83689579 Msa0961610:CDS 50.0%
TTGTGGTTGCACTTCCGTTG+AGG - chr6_3:83689577-83689596 Msa0961610:CDS 50.0%
CAATCACGGCCACAGTCTAA+AGG + chr6_3:83689615-83689634 None:intergenic 50.0%
TTAGACTGTGGCCGTGATTG+TGG - chr6_3:83689615-83689634 Msa0961610:intron 50.0%
TGCCAAGTAGAGATCCAGAG+TGG - chr6_3:83689938-83689957 Msa0961610:intron 50.0%
!! GGTCCGAAAAAGTACCACTC+TGG + chr6_3:83689955-83689974 None:intergenic 50.0%
GAGCAACAAGAGCAGGATAC+TGG - chr6_3:83690013-83690032 Msa0961610:intron 50.0%
TAAAGGCCAAAGGGTCAGGT+GGG + chr6_3:83691638-83691657 None:intergenic 50.0%
TAGGTAAAGGCCAAAGGGTC+AGG + chr6_3:83691642-83691661 None:intergenic 50.0%
! CGAGGGTGTACAAACCTTCA+TGG + chr6_3:83692605-83692624 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG + chr6_3:83694323-83694342 None:intergenic 50.0%
CCTTGTGAGCATAGCTCAGT+TGG + chr6_3:83694327-83694346 None:intergenic 50.0%
CCAACTGAGCTATGCTCACA+AGG - chr6_3:83694324-83694343 Msa0961610:CDS 50.0%
!! GTTTGGTTTGGTTTGGTGGG+TGG - chr6_3:83694425-83694444 Msa0961610:exon 50.0%
! TGGTGGGTGGACTTGTTTAG+GGG - chr6_3:83694438-83694457 Msa0961610:five_prime_UTR 50.0%
GTGGCCGTGATTGTGGTTGA+AGG - chr6_3:83689622-83689641 Msa0961610:intron 55.0%
CCGGCCTTCAACCACAATCA+CGG + chr6_3:83689629-83689648 None:intergenic 55.0%
CCGTGATTGTGGTTGAAGGC+CGG - chr6_3:83689626-83689645 Msa0961610:intron 55.0%
CGGTGCAGCAGAGATACAAG+AGG - chr6_3:83690262-83690281 Msa0961610:intron 55.0%
GTAAAGGCCAAAGGGTCAGG+TGG + chr6_3:83691639-83691658 None:intergenic 55.0%
CTAGGACCTCATGGATACCC+TGG + chr6_3:83692819-83692838 None:intergenic 55.0%
! TTGGTGCCCACCTGACCCTT+TGG - chr6_3:83691629-83691648 Msa0961610:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 83688969 83694474 83688969 ID=Msa0961610;Name=Msa0961610
chr6_3 mRNA 83688969 83694474 83688969 ID=Msa0961610-mRNA-1;Parent=Msa0961610;Name=Msa0961610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=39|1|1|1|1|1|3|353|239
chr6_3 exon 83688969 83689606 83688969 ID=Msa0961610-mRNA-1:exon:15018;Parent=Msa0961610-mRNA-1
chr6_3 exon 83693240 83693517 83693240 ID=Msa0961610-mRNA-1:exon:15017;Parent=Msa0961610-mRNA-1
chr6_3 exon 83694279 83694474 83694279 ID=Msa0961610-mRNA-1:exon:15016;Parent=Msa0961610-mRNA-1
chr6_3 five_prime_UTR 83694436 83694474 83694436 ID=Msa0961610-mRNA-1:five_prime_utr;Parent=Msa0961610-mRNA-1
chr6_3 CDS 83694279 83694435 83694279 ID=Msa0961610-mRNA-1:cds;Parent=Msa0961610-mRNA-1
chr6_3 CDS 83693240 83693517 83693240 ID=Msa0961610-mRNA-1:cds;Parent=Msa0961610-mRNA-1
chr6_3 CDS 83689322 83689606 83689322 ID=Msa0961610-mRNA-1:cds;Parent=Msa0961610-mRNA-1
chr6_3 three_prime_UTR 83688969 83689321 83688969 ID=Msa0961610-mRNA-1:three_prime_utr;Parent=Msa0961610-mRNA-1
Gene Sequence

>Msa0961610

ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGGAAAATCAATGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTTTTCGGACCGCGAGACCGAAAATACCCTAATGGATTTAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACTGGAAAAGACAGAAAAGTTTCATGCCAAAATAGACCTATTGGTATGAAGAAGACATTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTCGAACTGATTGGGTTATGCATGAGTATCGTCTTGATGATAAAGAATGTGAGGACAACACTGGATTACAGGATACGTATGCATTGTGTCGTGTGTTCAAGAAAAATGGAATTTGTTCTGATATGGAAGAGCAACAAGGACAATGTAGCATGTTACAAATTGAATGTTCTCAAACCATAATCAATAATGAGTGTGAAATGATGTCTCCAGAAATACTAGGAGCATCATCTTCATGTTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATACACCAATGGTTGGTGGTGAAGAAATTTCACATGTTACATTTACAAATTAA
Protein sequence

>Msa0961610

MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQGQCSMLQIECSQTIINNECEMMSPEILGASSSCLEEEDKDDSWMQFITEDAWYSSNTPMVGGEEISHVTFTN*