AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019430 MtrunA17_Chr7g0235211 91.375 429 12 1 1 404 1 429 0.0 770
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019430 AT3G25130.1 54.688 64 25 2 1 60 1 64 1.88e-11 65.9

Find 67 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAAAGATAGGAGTTTA+AGG 0.164367 7_1:-41145059 None:intergenic
CAAAGACTAAATGAAGATTT+TGG 0.193613 7_1:+41145737 Msa1019430:CDS
TCAACAGGGAAGATGAATTT+AGG 0.246896 7_1:+41146091 Msa1019430:CDS
TGTTCTAATCTTGGAAGTTT+TGG 0.255756 7_1:+41145818 Msa1019430:CDS
ACACTATGGTCCATTGAAAA+TGG 0.271896 7_1:+41145659 Msa1019430:CDS
GATGATAAAGATGAGGAAAT+TGG 0.284728 7_1:+41145261 Msa1019430:CDS
GATAGGAGTTTAAGGATATA+TGG 0.294167 7_1:-41145051 None:intergenic
TCCAATACCTTTCAAAGCTT+TGG 0.297202 7_1:-41146143 None:intergenic
TCCAAAGCTTTGAAAGGTAT+TGG 0.299212 7_1:+41146142 Msa1019430:CDS
GAAGAAGTTTGTTCTAATCT+TGG 0.301550 7_1:+41145809 Msa1019430:CDS
ATATAAAGGGTGAGAAAATA+TGG 0.310053 7_1:-41145004 None:intergenic
GAGTTTAGTGATGATGAGTT+AGG 0.313788 7_1:+41146019 Msa1019430:CDS
AAAATATGGAGAAACATAAA+TGG 0.320936 7_1:-41144990 None:intergenic
TGGAGAAAAGAAGAGAAAAT+AGG 0.323440 7_1:-41145031 None:intergenic
AGAAGTAGTCAAGCCTATAT+TGG 0.332436 7_1:+41145601 Msa1019430:CDS
TGATGATGAGTTAGGGGAAG+AGG 0.338584 7_1:+41146027 Msa1019430:CDS
CCCTTATGATGAACAAGGTT+TGG 0.357047 7_1:-41145138 None:intergenic
TTGAATTTAGTATCCAATAT+AGG 0.358936 7_1:-41145614 None:intergenic
GGAAGTAGTTGAATCCATTA+AGG 0.375306 7_1:+41145490 Msa1019430:CDS
CAAGCTTTGAAATTCTCAAC+AGG 0.378595 7_1:+41146076 Msa1019430:CDS
GTGAAGGAATGGATATGCTT+TGG 0.388433 7_1:+41145921 Msa1019430:CDS
AGAGAACTCATTGTTCTTGT+TGG 0.389427 7_1:-41144944 None:intergenic
TGAAGGAATGGATATGCTTT+GGG 0.392510 7_1:+41145922 Msa1019430:CDS
ACAAAGGAGAAAGAAAAGAT+AGG 0.408934 7_1:-41145068 None:intergenic
GAGTATGGTGGAAAAGGTAT+AGG 0.411829 7_1:+41145779 Msa1019430:CDS
AAAAGAGGTTTATTGTCAAA+TGG 0.412280 7_1:+41145418 Msa1019430:CDS
AGTTTAGTGATGATGAGTTA+GGG 0.415821 7_1:+41146020 Msa1019430:CDS
AGAAAACAAAGTTGAGAAAG+TGG 0.418260 7_1:+41145469 Msa1019430:CDS
TCCAAACCTTGTTCATCATA+AGG 0.418746 7_1:+41145137 Msa1019430:CDS
AGTATGGTGGAAAAGGTATA+GGG 0.423952 7_1:+41145780 Msa1019430:CDS
TTGGAGAATTTGACAAGGTT+AGG 0.431973 7_1:-41146124 None:intergenic
AAGAAAAGTAACACAAAGAA+AGG 0.440269 7_1:+41145977 Msa1019430:CDS
AGAAAATGTGTCTTGTGAAA+AGG 0.452614 7_1:+41145571 Msa1019430:CDS
GTCTCTATTACCCTTCACTT+TGG 0.467195 7_1:-41145684 None:intergenic
GAGTTAGGGGAAGAGGAGGT+AGG 0.471390 7_1:+41146034 Msa1019430:CDS
TTGCATCATGTAGGCAAGAA+TGG 0.480234 7_1:+41146169 Msa1019430:CDS
AATTGGGAGTATGGTGGAAA+AGG 0.481166 7_1:+41145773 Msa1019430:CDS
CCAAACCTTGTTCATCATAA+GGG 0.483006 7_1:+41145138 Msa1019430:CDS
GGATACTAAATTCAATAAAG+TGG 0.514253 7_1:+41145622 Msa1019430:CDS
AGGGAAGATGAATTTAGGAA+TGG 0.516981 7_1:+41146096 Msa1019430:CDS
TGATGAGTTAGGGGAAGAGG+AGG 0.523787 7_1:+41146030 Msa1019430:CDS
AAGCTTTGAAAGGTATTGGA+TGG 0.532498 7_1:+41146146 Msa1019430:CDS
AGAGTAGTGGTAATGAACAA+AGG 0.533254 7_1:-41145084 None:intergenic
GGGAAGATGAATTTAGGAAT+GGG 0.537973 7_1:+41146097 Msa1019430:CDS
TGGTGATGGAAGTGAAGGAA+TGG 0.552101 7_1:+41145910 Msa1019430:CDS
AAGAAAGCAAAGAAACACTA+TGG 0.554986 7_1:+41145645 Msa1019430:CDS
AAAAGAATGGAGAAGGACAT+TGG 0.560357 7_1:+41145856 Msa1019430:CDS
GTTTAGTGATGATGAGTTAG+GGG 0.564101 7_1:+41146021 Msa1019430:CDS
TTGAGAGTTATGAGTCCAAA+TGG 0.565581 7_1:+41145190 Msa1019430:CDS
AGAAAAGTAACACAAAGAAA+GGG 0.575353 7_1:+41145978 Msa1019430:CDS
GAAAGACACAACAATGGTGA+TGG 0.579519 7_1:+41145896 Msa1019430:CDS
AAATTCTCCAAAGCTTTGAA+AGG 0.585068 7_1:+41146136 Msa1019430:CDS
AACAATGGTGATGGAAGTGA+AGG 0.586991 7_1:+41145905 Msa1019430:CDS
TGAAAATGGATCCAAAGTGA+AGG 0.588660 7_1:+41145673 Msa1019430:CDS
GAAAATGGATCCAAAGTGAA+GGG 0.600047 7_1:+41145674 Msa1019430:CDS
AACAAGGAGAAGAAGAGTAG+TGG 0.608591 7_1:-41145097 None:intergenic
AAAAGCAATTGGGAGTATGG+TGG 0.613321 7_1:+41145767 Msa1019430:CDS
TGAAGCTGATGATAAAGATG+AGG 0.620705 7_1:+41145254 Msa1019430:CDS
TACTACCCTTATGATGAACA+AGG 0.626229 7_1:-41145143 None:intergenic
ATTGGATGGTTGCATCATGT+AGG 0.636955 7_1:+41146160 Msa1019430:CDS
AGATGAATTTAGGAATGGGA+AGG 0.640076 7_1:+41146101 Msa1019430:CDS
AAGCTTTGAAATTCTCAACA+GGG 0.664595 7_1:+41146077 Msa1019430:CDS
AATGGAACAAGACAGTGAAG+AGG 0.664688 7_1:-41144972 None:intergenic
AAGCTTTGGAGAATTTGACA+AGG 0.677569 7_1:-41146129 None:intergenic
TTTGAGGAAAGACACAACAA+TGG 0.678386 7_1:+41145890 Msa1019430:CDS
TGAAAGTAAGAAAAGCAACA+AGG 0.686262 7_1:-41145113 None:intergenic
ATATGAGAAAGAATCAAACA+AGG 0.721458 7_1:+41145949 Msa1019430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAGGAAAAATATAAA+GGG - chr7_1:41145020-41145039 None:intergenic 15.0%
!! AGAAAATAGGAAAAATATAA+AGG - chr7_1:41145021-41145040 None:intergenic 15.0%
!! GAAAATAGGAAAAATATAAA+GGG - chr7_1:41145020-41145039 None:intergenic 15.0%
!! AGAAAATAGGAAAAATATAA+AGG - chr7_1:41145021-41145040 None:intergenic 15.0%
!! AAAATATGGAGAAACATAAA+TGG - chr7_1:41144993-41145012 None:intergenic 20.0%
!! TTGAATTTAGTATCCAATAT+AGG - chr7_1:41145617-41145636 None:intergenic 20.0%
!! AAAATATGGAGAAACATAAA+TGG - chr7_1:41144993-41145012 None:intergenic 20.0%
!! TTGAATTTAGTATCCAATAT+AGG - chr7_1:41145617-41145636 None:intergenic 20.0%
! ATATAAAGGGTGAGAAAATA+TGG - chr7_1:41145007-41145026 None:intergenic 25.0%
! AAAGAAAAGATAGGAGTTTA+AGG - chr7_1:41145062-41145081 None:intergenic 25.0%
! AGAAAGAAAAAAACACCATT+TGG - chr7_1:41145208-41145227 None:intergenic 25.0%
!! CATATCAGTTGAAGATTTTT+CGG + chr7_1:41145355-41145374 Msa1019430:intron 25.0%
! AAAAGAGGTTTATTGTCAAA+TGG + chr7_1:41145418-41145437 Msa1019430:CDS 25.0%
!!! TAACACTTTTTCTTCCTTAA+TGG - chr7_1:41145507-41145526 None:intergenic 25.0%
! GGATACTAAATTCAATAAAG+TGG + chr7_1:41145622-41145641 Msa1019430:CDS 25.0%
!! CAAAGACTAAATGAAGATTT+TGG + chr7_1:41145737-41145756 Msa1019430:CDS 25.0%
! ATATGAGAAAGAATCAAACA+AGG + chr7_1:41145949-41145968 Msa1019430:CDS 25.0%
! AAGAAAAGTAACACAAAGAA+AGG + chr7_1:41145977-41145996 Msa1019430:CDS 25.0%
! AGAAAAGTAACACAAAGAAA+GGG + chr7_1:41145978-41145997 Msa1019430:CDS 25.0%
! ATATAAAGGGTGAGAAAATA+TGG - chr7_1:41145007-41145026 None:intergenic 25.0%
! AAAGAAAAGATAGGAGTTTA+AGG - chr7_1:41145062-41145081 None:intergenic 25.0%
! AGAAAGAAAAAAACACCATT+TGG - chr7_1:41145208-41145227 None:intergenic 25.0%
!! CATATCAGTTGAAGATTTTT+CGG + chr7_1:41145355-41145374 Msa1019430:intron 25.0%
! AAAAGAGGTTTATTGTCAAA+TGG + chr7_1:41145418-41145437 Msa1019430:CDS 25.0%
!!! TAACACTTTTTCTTCCTTAA+TGG - chr7_1:41145507-41145526 None:intergenic 25.0%
! GGATACTAAATTCAATAAAG+TGG + chr7_1:41145622-41145641 Msa1019430:CDS 25.0%
!! CAAAGACTAAATGAAGATTT+TGG + chr7_1:41145737-41145756 Msa1019430:CDS 25.0%
! ATATGAGAAAGAATCAAACA+AGG + chr7_1:41145949-41145968 Msa1019430:CDS 25.0%
! AAGAAAAGTAACACAAAGAA+AGG + chr7_1:41145977-41145996 Msa1019430:CDS 25.0%
! AGAAAAGTAACACAAAGAAA+GGG + chr7_1:41145978-41145997 Msa1019430:CDS 25.0%
TGGAGAAAAGAAGAGAAAAT+AGG - chr7_1:41145034-41145053 None:intergenic 30.0%
GATAGGAGTTTAAGGATATA+TGG - chr7_1:41145054-41145073 None:intergenic 30.0%
ACAAAGGAGAAAGAAAAGAT+AGG - chr7_1:41145071-41145090 None:intergenic 30.0%
TGAAAGTAAGAAAAGCAACA+AGG - chr7_1:41145116-41145135 None:intergenic 30.0%
!! TTTTGCAAACTTTTCTAGCA+TGG + chr7_1:41145229-41145248 Msa1019430:CDS 30.0%
GATGATAAAGATGAGGAAAT+TGG + chr7_1:41145261-41145280 Msa1019430:CDS 30.0%
!! AATTGGTTTGCTTAATGAGT+TGG + chr7_1:41145278-41145297 Msa1019430:intron 30.0%
! TAATGAGTTGGAAGCATATT+TGG + chr7_1:41145290-41145309 Msa1019430:intron 30.0%
! GTTTTCAGTTGAAGAAAAAG+AGG + chr7_1:41145403-41145422 Msa1019430:CDS 30.0%
TGAAGAGAAAAAAGTGAACT+TGG + chr7_1:41145442-41145461 Msa1019430:CDS 30.0%
AGAAAACAAAGTTGAGAAAG+TGG + chr7_1:41145469-41145488 Msa1019430:CDS 30.0%
AGAAAATGTGTCTTGTGAAA+AGG + chr7_1:41145571-41145590 Msa1019430:CDS 30.0%
AAGAAAGCAAAGAAACACTA+TGG + chr7_1:41145645-41145664 Msa1019430:CDS 30.0%
! GAAGAAGTTTGTTCTAATCT+TGG + chr7_1:41145809-41145828 Msa1019430:CDS 30.0%
! TGTTCTAATCTTGGAAGTTT+TGG + chr7_1:41145818-41145837 Msa1019430:CDS 30.0%
! AGTTTAGTGATGATGAGTTA+GGG + chr7_1:41146020-41146039 Msa1019430:CDS 30.0%
!! AAGCTTTGAAATTCTCAACA+GGG + chr7_1:41146077-41146096 Msa1019430:CDS 30.0%
!! AAATTCTCCAAAGCTTTGAA+AGG + chr7_1:41146136-41146155 Msa1019430:CDS 30.0%
TGGAGAAAAGAAGAGAAAAT+AGG - chr7_1:41145034-41145053 None:intergenic 30.0%
GATAGGAGTTTAAGGATATA+TGG - chr7_1:41145054-41145073 None:intergenic 30.0%
ACAAAGGAGAAAGAAAAGAT+AGG - chr7_1:41145071-41145090 None:intergenic 30.0%
TGAAAGTAAGAAAAGCAACA+AGG - chr7_1:41145116-41145135 None:intergenic 30.0%
!! TTTTGCAAACTTTTCTAGCA+TGG + chr7_1:41145229-41145248 Msa1019430:CDS 30.0%
GATGATAAAGATGAGGAAAT+TGG + chr7_1:41145261-41145280 Msa1019430:CDS 30.0%
!! AATTGGTTTGCTTAATGAGT+TGG + chr7_1:41145278-41145297 Msa1019430:intron 30.0%
! TAATGAGTTGGAAGCATATT+TGG + chr7_1:41145290-41145309 Msa1019430:intron 30.0%
! GTTTTCAGTTGAAGAAAAAG+AGG + chr7_1:41145403-41145422 Msa1019430:CDS 30.0%
TGAAGAGAAAAAAGTGAACT+TGG + chr7_1:41145442-41145461 Msa1019430:CDS 30.0%
AGAAAACAAAGTTGAGAAAG+TGG + chr7_1:41145469-41145488 Msa1019430:CDS 30.0%
AGAAAATGTGTCTTGTGAAA+AGG + chr7_1:41145571-41145590 Msa1019430:CDS 30.0%
AAGAAAGCAAAGAAACACTA+TGG + chr7_1:41145645-41145664 Msa1019430:CDS 30.0%
! GAAGAAGTTTGTTCTAATCT+TGG + chr7_1:41145809-41145828 Msa1019430:CDS 30.0%
! TGTTCTAATCTTGGAAGTTT+TGG + chr7_1:41145818-41145837 Msa1019430:CDS 30.0%
! AGTTTAGTGATGATGAGTTA+GGG + chr7_1:41146020-41146039 Msa1019430:CDS 30.0%
!! AAGCTTTGAAATTCTCAACA+GGG + chr7_1:41146077-41146096 Msa1019430:CDS 30.0%
!! AAATTCTCCAAAGCTTTGAA+AGG + chr7_1:41146136-41146155 Msa1019430:CDS 30.0%
AGAGAACTCATTGTTCTTGT+TGG - chr7_1:41144947-41144966 None:intergenic 35.0%
! AGAGTAGTGGTAATGAACAA+AGG - chr7_1:41145087-41145106 None:intergenic 35.0%
TCCAAACCTTGTTCATCATA+AGG + chr7_1:41145137-41145156 Msa1019430:CDS 35.0%
CCAAACCTTGTTCATCATAA+GGG + chr7_1:41145138-41145157 Msa1019430:CDS 35.0%
TACTACCCTTATGATGAACA+AGG - chr7_1:41145146-41145165 None:intergenic 35.0%
TTGAGAGTTATGAGTCCAAA+TGG + chr7_1:41145190-41145209 Msa1019430:CDS 35.0%
TGAAGCTGATGATAAAGATG+AGG + chr7_1:41145254-41145273 Msa1019430:CDS 35.0%
GAACTTCAAAGATTGAAGCT+TGG - chr7_1:41145323-41145342 None:intergenic 35.0%
GGAAGTAGTTGAATCCATTA+AGG + chr7_1:41145490-41145509 Msa1019430:CDS 35.0%
AGAAGTAGTCAAGCCTATAT+TGG + chr7_1:41145601-41145620 Msa1019430:CDS 35.0%
ACACTATGGTCCATTGAAAA+TGG + chr7_1:41145659-41145678 Msa1019430:CDS 35.0%
! CACTTTGGATCCATTTTCAA+TGG - chr7_1:41145672-41145691 None:intergenic 35.0%
TGAAAATGGATCCAAAGTGA+AGG + chr7_1:41145673-41145692 Msa1019430:CDS 35.0%
GAAAATGGATCCAAAGTGAA+GGG + chr7_1:41145674-41145693 Msa1019430:CDS 35.0%
TTGGAAGTCCAAAAAGCAAT+TGG + chr7_1:41145756-41145775 Msa1019430:CDS 35.0%
TGGAAGTCCAAAAAGCAATT+GGG + chr7_1:41145757-41145776 Msa1019430:CDS 35.0%
! AGTATGGTGGAAAAGGTATA+GGG + chr7_1:41145780-41145799 Msa1019430:CDS 35.0%
!!! AAGTTTTGGTTCAATGAGAG+TGG + chr7_1:41145832-41145851 Msa1019430:CDS 35.0%
CAATGAGAGTGGAAAAAGAA+TGG + chr7_1:41145843-41145862 Msa1019430:CDS 35.0%
AAAAGAATGGAGAAGGACAT+TGG + chr7_1:41145856-41145875 Msa1019430:CDS 35.0%
TTTGAGGAAAGACACAACAA+TGG + chr7_1:41145890-41145909 Msa1019430:CDS 35.0%
TGAAGGAATGGATATGCTTT+GGG + chr7_1:41145922-41145941 Msa1019430:CDS 35.0%
! GAGTTTAGTGATGATGAGTT+AGG + chr7_1:41146019-41146038 Msa1019430:CDS 35.0%
! GTTTAGTGATGATGAGTTAG+GGG + chr7_1:41146021-41146040 Msa1019430:CDS 35.0%
!! CAAGCTTTGAAATTCTCAAC+AGG + chr7_1:41146076-41146095 Msa1019430:CDS 35.0%
TCAACAGGGAAGATGAATTT+AGG + chr7_1:41146091-41146110 Msa1019430:CDS 35.0%
AGGGAAGATGAATTTAGGAA+TGG + chr7_1:41146096-41146115 Msa1019430:CDS 35.0%
GGGAAGATGAATTTAGGAAT+GGG + chr7_1:41146097-41146116 Msa1019430:CDS 35.0%
AGATGAATTTAGGAATGGGA+AGG + chr7_1:41146101-41146120 Msa1019430:CDS 35.0%
TTGGAGAATTTGACAAGGTT+AGG - chr7_1:41146127-41146146 None:intergenic 35.0%
!! AAGCTTTGGAGAATTTGACA+AGG - chr7_1:41146132-41146151 None:intergenic 35.0%
!! TCCAAAGCTTTGAAAGGTAT+TGG + chr7_1:41146142-41146161 Msa1019430:CDS 35.0%
TCCAATACCTTTCAAAGCTT+TGG - chr7_1:41146146-41146165 None:intergenic 35.0%
!! AAGCTTTGAAAGGTATTGGA+TGG + chr7_1:41146146-41146165 Msa1019430:CDS 35.0%
AGAGAACTCATTGTTCTTGT+TGG - chr7_1:41144947-41144966 None:intergenic 35.0%
! AGAGTAGTGGTAATGAACAA+AGG - chr7_1:41145087-41145106 None:intergenic 35.0%
TCCAAACCTTGTTCATCATA+AGG + chr7_1:41145137-41145156 Msa1019430:CDS 35.0%
CCAAACCTTGTTCATCATAA+GGG + chr7_1:41145138-41145157 Msa1019430:CDS 35.0%
TACTACCCTTATGATGAACA+AGG - chr7_1:41145146-41145165 None:intergenic 35.0%
TTGAGAGTTATGAGTCCAAA+TGG + chr7_1:41145190-41145209 Msa1019430:CDS 35.0%
TGAAGCTGATGATAAAGATG+AGG + chr7_1:41145254-41145273 Msa1019430:CDS 35.0%
GAACTTCAAAGATTGAAGCT+TGG - chr7_1:41145323-41145342 None:intergenic 35.0%
GGAAGTAGTTGAATCCATTA+AGG + chr7_1:41145490-41145509 Msa1019430:CDS 35.0%
AGAAGTAGTCAAGCCTATAT+TGG + chr7_1:41145601-41145620 Msa1019430:CDS 35.0%
ACACTATGGTCCATTGAAAA+TGG + chr7_1:41145659-41145678 Msa1019430:CDS 35.0%
! CACTTTGGATCCATTTTCAA+TGG - chr7_1:41145672-41145691 None:intergenic 35.0%
TGAAAATGGATCCAAAGTGA+AGG + chr7_1:41145673-41145692 Msa1019430:CDS 35.0%
GAAAATGGATCCAAAGTGAA+GGG + chr7_1:41145674-41145693 Msa1019430:CDS 35.0%
TTGGAAGTCCAAAAAGCAAT+TGG + chr7_1:41145756-41145775 Msa1019430:CDS 35.0%
TGGAAGTCCAAAAAGCAATT+GGG + chr7_1:41145757-41145776 Msa1019430:CDS 35.0%
! AGTATGGTGGAAAAGGTATA+GGG + chr7_1:41145780-41145799 Msa1019430:CDS 35.0%
!!! AAGTTTTGGTTCAATGAGAG+TGG + chr7_1:41145832-41145851 Msa1019430:CDS 35.0%
CAATGAGAGTGGAAAAAGAA+TGG + chr7_1:41145843-41145862 Msa1019430:CDS 35.0%
AAAAGAATGGAGAAGGACAT+TGG + chr7_1:41145856-41145875 Msa1019430:CDS 35.0%
TTTGAGGAAAGACACAACAA+TGG + chr7_1:41145890-41145909 Msa1019430:CDS 35.0%
TGAAGGAATGGATATGCTTT+GGG + chr7_1:41145922-41145941 Msa1019430:CDS 35.0%
! GAGTTTAGTGATGATGAGTT+AGG + chr7_1:41146019-41146038 Msa1019430:CDS 35.0%
! GTTTAGTGATGATGAGTTAG+GGG + chr7_1:41146021-41146040 Msa1019430:CDS 35.0%
!! CAAGCTTTGAAATTCTCAAC+AGG + chr7_1:41146076-41146095 Msa1019430:CDS 35.0%
TCAACAGGGAAGATGAATTT+AGG + chr7_1:41146091-41146110 Msa1019430:CDS 35.0%
AGGGAAGATGAATTTAGGAA+TGG + chr7_1:41146096-41146115 Msa1019430:CDS 35.0%
GGGAAGATGAATTTAGGAAT+GGG + chr7_1:41146097-41146116 Msa1019430:CDS 35.0%
AGATGAATTTAGGAATGGGA+AGG + chr7_1:41146101-41146120 Msa1019430:CDS 35.0%
TTGGAGAATTTGACAAGGTT+AGG - chr7_1:41146127-41146146 None:intergenic 35.0%
!! AAGCTTTGGAGAATTTGACA+AGG - chr7_1:41146132-41146151 None:intergenic 35.0%
!! TCCAAAGCTTTGAAAGGTAT+TGG + chr7_1:41146142-41146161 Msa1019430:CDS 35.0%
TCCAATACCTTTCAAAGCTT+TGG - chr7_1:41146146-41146165 None:intergenic 35.0%
!! AAGCTTTGAAAGGTATTGGA+TGG + chr7_1:41146146-41146165 Msa1019430:CDS 35.0%
AATGGAACAAGACAGTGAAG+AGG - chr7_1:41144975-41144994 None:intergenic 40.0%
AACAAGGAGAAGAAGAGTAG+TGG - chr7_1:41145100-41145119 None:intergenic 40.0%
CCCTTATGATGAACAAGGTT+TGG - chr7_1:41145141-41145160 None:intergenic 40.0%
GTCTCTATTACCCTTCACTT+TGG - chr7_1:41145687-41145706 None:intergenic 40.0%
!! CCATACTCCCAATTGCTTTT+TGG - chr7_1:41145767-41145786 None:intergenic 40.0%
CCAAAAAGCAATTGGGAGTA+TGG + chr7_1:41145764-41145783 Msa1019430:CDS 40.0%
! AAAAGCAATTGGGAGTATGG+TGG + chr7_1:41145767-41145786 Msa1019430:CDS 40.0%
! AATTGGGAGTATGGTGGAAA+AGG + chr7_1:41145773-41145792 Msa1019430:CDS 40.0%
! GAGTATGGTGGAAAAGGTAT+AGG + chr7_1:41145779-41145798 Msa1019430:CDS 40.0%
GAGTGGAAAAAGAATGGAGA+AGG + chr7_1:41145849-41145868 Msa1019430:CDS 40.0%
!!! ATTGGCTTGCAAGCTTTTTG+AGG + chr7_1:41145874-41145893 Msa1019430:CDS 40.0%
GAAAGACACAACAATGGTGA+TGG + chr7_1:41145896-41145915 Msa1019430:CDS 40.0%
!! AACAATGGTGATGGAAGTGA+AGG + chr7_1:41145905-41145924 Msa1019430:CDS 40.0%
GTGAAGGAATGGATATGCTT+TGG + chr7_1:41145921-41145940 Msa1019430:CDS 40.0%
ATTGGATGGTTGCATCATGT+AGG + chr7_1:41146160-41146179 Msa1019430:CDS 40.0%
TTGCATCATGTAGGCAAGAA+TGG + chr7_1:41146169-41146188 Msa1019430:CDS 40.0%
AATGGAACAAGACAGTGAAG+AGG - chr7_1:41144975-41144994 None:intergenic 40.0%
AACAAGGAGAAGAAGAGTAG+TGG - chr7_1:41145100-41145119 None:intergenic 40.0%
CCCTTATGATGAACAAGGTT+TGG - chr7_1:41145141-41145160 None:intergenic 40.0%
GTCTCTATTACCCTTCACTT+TGG - chr7_1:41145687-41145706 None:intergenic 40.0%
!! CCATACTCCCAATTGCTTTT+TGG - chr7_1:41145767-41145786 None:intergenic 40.0%
CCAAAAAGCAATTGGGAGTA+TGG + chr7_1:41145764-41145783 Msa1019430:CDS 40.0%
! AAAAGCAATTGGGAGTATGG+TGG + chr7_1:41145767-41145786 Msa1019430:CDS 40.0%
! AATTGGGAGTATGGTGGAAA+AGG + chr7_1:41145773-41145792 Msa1019430:CDS 40.0%
! GAGTATGGTGGAAAAGGTAT+AGG + chr7_1:41145779-41145798 Msa1019430:CDS 40.0%
GAGTGGAAAAAGAATGGAGA+AGG + chr7_1:41145849-41145868 Msa1019430:CDS 40.0%
!!! ATTGGCTTGCAAGCTTTTTG+AGG + chr7_1:41145874-41145893 Msa1019430:CDS 40.0%
GAAAGACACAACAATGGTGA+TGG + chr7_1:41145896-41145915 Msa1019430:CDS 40.0%
!! AACAATGGTGATGGAAGTGA+AGG + chr7_1:41145905-41145924 Msa1019430:CDS 40.0%
GTGAAGGAATGGATATGCTT+TGG + chr7_1:41145921-41145940 Msa1019430:CDS 40.0%
ATTGGATGGTTGCATCATGT+AGG + chr7_1:41146160-41146179 Msa1019430:CDS 40.0%
TTGCATCATGTAGGCAAGAA+TGG + chr7_1:41146169-41146188 Msa1019430:CDS 40.0%
!! TGGTGATGGAAGTGAAGGAA+TGG + chr7_1:41145910-41145929 Msa1019430:CDS 45.0%
! TGATGATGAGTTAGGGGAAG+AGG + chr7_1:41146027-41146046 Msa1019430:CDS 45.0%
!! TGGTGATGGAAGTGAAGGAA+TGG + chr7_1:41145910-41145929 Msa1019430:CDS 45.0%
! TGATGATGAGTTAGGGGAAG+AGG + chr7_1:41146027-41146046 Msa1019430:CDS 45.0%
TGATGAGTTAGGGGAAGAGG+AGG + chr7_1:41146030-41146049 Msa1019430:CDS 50.0%
TGATGAGTTAGGGGAAGAGG+AGG + chr7_1:41146030-41146049 Msa1019430:CDS 50.0%
GAGTTAGGGGAAGAGGAGGT+AGG + chr7_1:41146034-41146053 Msa1019430:CDS 55.0%
GAGTTAGGGGAAGAGGAGGT+AGG + chr7_1:41146034-41146053 Msa1019430:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 41144916 41146210 41144916 ID=Msa1019430;Name=Msa1019430
chr7_1 mRNA 41144916 41146210 41144916 ID=Msa1019430-mRNA-1;Parent=Msa1019430;Name=Msa1019430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|404
chr7_1 exon 41144916 41145282 41144916 ID=Msa1019430-mRNA-1:exon:7994;Parent=Msa1019430-mRNA-1
chr7_1 exon 41145363 41146210 41145363 ID=Msa1019430-mRNA-1:exon:7995;Parent=Msa1019430-mRNA-1
chr7_1 CDS 41144916 41145282 41144916 ID=Msa1019430-mRNA-1:cds;Parent=Msa1019430-mRNA-1
chr7_1 CDS 41145363 41146210 41145363 ID=Msa1019430-mRNA-1:cds;Parent=Msa1019430-mRNA-1
Gene Sequence

>Msa1019430

ATGAGTGAGTTATCTTTCTCAAATGCTTCCAACAAGAACAATGAGTTCTCTAGTAACCTCTTCACTGTCTTGTTCCATTTATGTTTCTCCATATTTTCTCACCCTTTATATTTTTCCTATTTTCTCTTCTTTTCTCCATATATCCTTAAACTCCTATCTTTTCTTTCTCCTTTGTTCATTACCACTACTCTTCTTCTCCTTGTTGCTTTTCTTACTTTCACTCCAAACCTTGTTCATCATAAGGGTAGTAGCAAAAGTACTAGTACTAGTAGTGTTGAGAGTTATGAGTCCAAATGGTGTTTTTTTCTTTCTATTTTGCAAACTTTTCTAGCATGGTTTGAAGCTGATGATAAAGATGAGGAAATTGTTGAAGATTTTTCGGAAGAGTTTGAAGAAGTAGATGAAGAGTTTTCAGTTGAAGAAAAAGAGGTTTATTGTCAAATGGATGAAGAGAAAAAAGTGAACTTGGATGAAGAAAACAAAGTTGAGAAAGTGGAAGTAGTTGAATCCATTAAGGAAGAAAAAGTGTTAGATGTGAAGAGTTTAGTAACTTTGTTTCAAGAATATGCAGAGTTAGAAAATGTGTCTTGTGAAAAGGAAGAAAAAGAAGTAGTCAAGCCTATATTGGATACTAAATTCAATAAAGTGGAAGAAAGCAAAGAAACACTATGGTCCATTGAAAATGGATCCAAAGTGAAGGGTAATAGAGACATGTATGCAAATAAAGTGAAAGTGAAATCTCAAAGACTAAATGAAGATTTTGGAAGTCCAAAAAGCAATTGGGAGTATGGTGGAAAAGGTATAGGGAATAATGAAGAAGTTTGTTCTAATCTTGGAAGTTTTGGTTCAATGAGAGTGGAAAAAGAATGGAGAAGGACATTGGCTTGCAAGCTTTTTGAGGAAAGACACAACAATGGTGATGGAAGTGAAGGAATGGATATGCTTTGGGAGACATATGAGAAAGAATCAAACAAGGTTGTGAAGAAAAGTAACACAAAGAAAGGGAAGAAATTAAGTGAAGTTGAGTTTAGTGATGATGAGTTAGGGGAAGAGGAGGTAGGAGCTAAGTTATGTTGTTTACAAGCTTTGAAATTCTCAACAGGGAAGATGAATTTAGGAATGGGAAGGCCTAACCTTGTCAAATTCTCCAAAGCTTTGAAAGGTATTGGATGGTTGCATCATGTAGGCAAGAATGGAAAGAAGAATAACCACTAA

Protein sequence

>Msa1019430

MSELSFSNASNKNNEFSSNLFTVLFHLCFSIFSHPLYFSYFLFFSPYILKLLSFLSPLFITTTLLLLVAFLTFTPNLVHHKGSSKSTSTSSVESYESKWCFFLSILQTFLAWFEADDKDEEIVEDFSEEFEEVDEEFSVEEKEVYCQMDEEKKVNLDEENKVEKVEVVESIKEEKVLDVKSLVTLFQEYAELENVSCEKEEKEVVKPILDTKFNKVEESKETLWSIENGSKVKGNRDMYANKVKVKSQRLNEDFGSPKSNWEYGGKGIGNNEEVCSNLGSFGSMRVEKEWRRTLACKLFEERHNNGDGSEGMDMLWETYEKESNKVVKKSNTKKGKKLSEVEFSDDELGEEEVGAKLCCLQALKFSTGKMNLGMGRPNLVKFSKALKGIGWLHHVGKNGKKNNH*