Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062010 | XP_003623199.1 | 97.908 | 239 | 5 | 0 | 1 | 239 | 1 | 239 | 2.28e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062010 | sp|P32110|GSTX6_SOYBN | 72.321 | 224 | 57 | 2 | 19 | 237 | 1 | 224 | 1.87e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062010 | G7L6H3 | 97.908 | 239 | 5 | 0 | 1 | 239 | 1 | 239 | 1.09e-170 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0388770 | Msa1062010 | 0.802386 | 5.749466e-49 | -8.615850e-47 |
| Msa1020630 | Msa1062010 | 0.806511 | 7.939286e-50 | -8.615850e-47 |
| Msa1023290 | Msa1062010 | 0.855352 | 6.683193e-62 | -8.615850e-47 |
| Msa1062010 | Msa1113800 | 0.817219 | 3.693984e-52 | -8.615850e-47 |
| Msa1062010 | Msa1150820 | 0.817889 | 2.609642e-52 | -8.615850e-47 |
| Msa1062010 | Msa1160500 | 0.823034 | 1.721117e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062010 | MtrunA17_Chr7g0240611 | 97.738 | 221 | 5 | 0 | 19 | 239 | 1 | 221 | 3.26e-160 | 442 |
| Msa1062010 | MtrunA17_Chr7g0240651 | 83.258 | 221 | 37 | 0 | 19 | 239 | 1 | 221 | 2.92e-128 | 361 |
| Msa1062010 | MtrunA17_Chr7g0240671 | 78.325 | 203 | 44 | 0 | 26 | 228 | 5 | 207 | 2.19e-118 | 337 |
| Msa1062010 | MtrunA17_Chr7g0240661 | 80.000 | 210 | 42 | 0 | 19 | 228 | 1 | 210 | 5.97e-117 | 333 |
| Msa1062010 | MtrunA17_Chr7g0240561 | 67.713 | 223 | 68 | 1 | 19 | 237 | 1 | 223 | 1.55e-110 | 317 |
| Msa1062010 | MtrunA17_Chr7g0240511 | 71.233 | 219 | 62 | 1 | 19 | 237 | 1 | 218 | 1.74e-108 | 311 |
| Msa1062010 | MtrunA17_Chr7g0240631 | 68.000 | 225 | 68 | 1 | 19 | 239 | 1 | 225 | 1.84e-107 | 309 |
| Msa1062010 | MtrunA17_Chr7g0240641 | 67.556 | 225 | 69 | 1 | 19 | 239 | 1 | 225 | 2.99e-107 | 308 |
| Msa1062010 | MtrunA17_Chr7g0240581 | 67.713 | 223 | 68 | 1 | 19 | 237 | 1 | 223 | 1.76e-106 | 306 |
| Msa1062010 | MtrunA17_Chr7g0240681 | 68.778 | 221 | 64 | 2 | 19 | 234 | 1 | 221 | 2.95e-104 | 301 |
| Msa1062010 | MtrunA17_Chr7g0240551 | 67.123 | 219 | 68 | 1 | 19 | 233 | 1 | 219 | 6.47e-104 | 300 |
| Msa1062010 | MtrunA17_Chr7g0240531 | 66.972 | 218 | 68 | 1 | 19 | 232 | 1 | 218 | 2.89e-100 | 291 |
| Msa1062010 | MtrunA17_Chr7g0240691 | 63.801 | 221 | 75 | 2 | 24 | 239 | 36 | 256 | 1.36e-97 | 285 |
| Msa1062010 | MtrunA17_Chr7g0240541 | 63.761 | 218 | 75 | 1 | 19 | 232 | 1 | 218 | 7.51e-97 | 282 |
| Msa1062010 | MtrunA17_Chr4g0008791 | 60.444 | 225 | 85 | 1 | 19 | 239 | 1 | 225 | 6.47e-94 | 275 |
| Msa1062010 | MtrunA17_Chr7g0240521 | 64.444 | 225 | 75 | 2 | 18 | 237 | 7 | 231 | 1.12e-92 | 272 |
| Msa1062010 | MtrunA17_Chr4g0008781 | 60.731 | 219 | 80 | 3 | 18 | 231 | 1 | 218 | 2.94e-91 | 268 |
| Msa1062010 | MtrunA17_Chr6g0483141 | 47.596 | 208 | 103 | 3 | 25 | 227 | 3 | 209 | 4.01e-62 | 194 |
| Msa1062010 | MtrunA17_Chr3g0132581 | 47.748 | 222 | 110 | 3 | 22 | 238 | 2 | 222 | 2.28e-61 | 192 |
| Msa1062010 | MtrunA17_Chr8g0379561 | 42.534 | 221 | 121 | 3 | 24 | 239 | 5 | 224 | 1.38e-57 | 182 |
| Msa1062010 | MtrunA17_Chr5g0417011 | 40.541 | 222 | 120 | 4 | 19 | 229 | 1 | 221 | 2.45e-55 | 176 |
| Msa1062010 | MtrunA17_Chr1g0196691 | 42.534 | 221 | 120 | 2 | 25 | 238 | 28 | 248 | 3.21e-55 | 177 |
| Msa1062010 | MtrunA17_Chr8g0379581 | 43.119 | 218 | 118 | 3 | 22 | 234 | 2 | 218 | 3.70e-55 | 176 |
| Msa1062010 | MtrunA17_Chr1g0196771 | 43.243 | 222 | 117 | 4 | 24 | 238 | 2 | 221 | 7.14e-55 | 175 |
| Msa1062010 | MtrunA17_Chr1g0196661 | 40.090 | 222 | 121 | 4 | 25 | 237 | 3 | 221 | 6.85e-51 | 165 |
| Msa1062010 | MtrunA17_Chr1g0212301 | 41.014 | 217 | 117 | 5 | 25 | 232 | 3 | 217 | 1.18e-48 | 159 |
| Msa1062010 | MtrunA17_Chr1g0196721 | 39.726 | 219 | 124 | 3 | 26 | 237 | 3 | 220 | 1.21e-48 | 159 |
| Msa1062010 | MtrunA17_Chr4g0029341 | 39.535 | 215 | 118 | 4 | 24 | 229 | 3 | 214 | 2.50e-48 | 158 |
| Msa1062010 | MtrunA17_Chr5g0415411 | 40.444 | 225 | 122 | 4 | 22 | 234 | 2 | 226 | 4.36e-47 | 155 |
| Msa1062010 | MtrunA17_Chr2g0312731 | 40.488 | 205 | 113 | 5 | 24 | 222 | 3 | 204 | 2.15e-45 | 151 |
| Msa1062010 | MtrunA17_Chr1g0196711 | 39.810 | 211 | 115 | 4 | 25 | 226 | 3 | 210 | 6.47e-45 | 150 |
| Msa1062010 | MtrunA17_Chr2g0312771 | 38.756 | 209 | 119 | 5 | 24 | 226 | 3 | 208 | 2.87e-44 | 148 |
| Msa1062010 | MtrunA17_Chr2g0312751 | 38.278 | 209 | 120 | 5 | 24 | 226 | 3 | 208 | 1.50e-43 | 146 |
| Msa1062010 | MtrunA17_Chr8g0363751 | 39.545 | 220 | 121 | 5 | 22 | 229 | 2 | 221 | 3.71e-42 | 143 |
| Msa1062010 | MtrunA17_Chr2g0312811 | 38.863 | 211 | 118 | 6 | 24 | 226 | 3 | 210 | 3.97e-42 | 142 |
| Msa1062010 | MtrunA17_Chr4g0069471 | 46.448 | 183 | 90 | 6 | 23 | 200 | 23 | 202 | 2.25e-41 | 140 |
| Msa1062010 | MtrunA17_Chr3g0107731 | 40.284 | 211 | 121 | 5 | 20 | 226 | 4 | 213 | 3.52e-41 | 140 |
| Msa1062010 | MtrunA17_Chr8g0357241 | 45.161 | 186 | 97 | 5 | 24 | 205 | 3 | 187 | 4.56e-41 | 140 |
| Msa1062010 | MtrunA17_Chr8g0357211 | 45.161 | 186 | 97 | 5 | 24 | 205 | 3 | 187 | 5.14e-41 | 139 |
| Msa1062010 | MtrunA17_Chr2g0312721 | 37.931 | 203 | 121 | 4 | 24 | 222 | 3 | 204 | 6.80e-41 | 139 |
| Msa1062010 | MtrunA17_Chr2g0312781 | 35.455 | 220 | 133 | 5 | 9 | 222 | 5 | 221 | 7.57e-41 | 140 |
| Msa1062010 | MtrunA17_Chr2g0312791 | 38.095 | 210 | 121 | 5 | 24 | 226 | 3 | 210 | 4.24e-40 | 137 |
| Msa1062010 | MtrunA17_Chr2g0312691 | 37.327 | 217 | 127 | 5 | 25 | 235 | 4 | 217 | 9.45e-39 | 134 |
| Msa1062010 | MtrunA17_Chr3g0107741 | 37.441 | 211 | 123 | 5 | 22 | 226 | 6 | 213 | 2.58e-38 | 133 |
| Msa1062010 | MtrunA17_Chr2g0312681 | 37.981 | 208 | 118 | 6 | 25 | 226 | 4 | 206 | 1.68e-37 | 130 |
| Msa1062010 | MtrunA17_Chr5g0433801 | 39.130 | 207 | 121 | 5 | 24 | 226 | 5 | 210 | 2.55e-37 | 130 |
| Msa1062010 | MtrunA17_Chr2g0312711 | 37.327 | 217 | 126 | 6 | 25 | 235 | 4 | 216 | 3.40e-35 | 124 |
| Msa1062010 | MtrunA17_Chr8g0391631 | 44.578 | 166 | 81 | 6 | 15 | 171 | 12 | 175 | 5.68e-34 | 120 |
| Msa1062010 | MtrunA17_Chr2g0313561 | 40.580 | 69 | 39 | 2 | 69 | 136 | 2 | 69 | 1.42e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062010 | AT2G29420.1 | 46.637 | 223 | 113 | 3 | 21 | 238 | 5 | 226 | 4.28e-68 | 209 |
| Msa1062010 | AT3G09270.1 | 49.321 | 221 | 104 | 5 | 23 | 236 | 4 | 223 | 1.05e-64 | 201 |
| Msa1062010 | AT2G29450.1 | 43.498 | 223 | 120 | 3 | 21 | 237 | 2 | 224 | 2.83e-58 | 184 |
| Msa1062010 | AT2G29490.1 | 45.133 | 226 | 115 | 5 | 19 | 237 | 1 | 224 | 5.19e-57 | 181 |
| Msa1062010 | AT2G29460.1 | 45.333 | 225 | 116 | 4 | 19 | 237 | 1 | 224 | 6.52e-57 | 181 |
| Msa1062010 | AT2G29480.1 | 45.089 | 224 | 113 | 5 | 19 | 233 | 1 | 223 | 2.41e-55 | 177 |
| Msa1062010 | AT2G29440.1 | 42.601 | 223 | 121 | 4 | 21 | 237 | 2 | 223 | 4.82e-53 | 171 |
| Msa1062010 | AT2G29470.1 | 43.056 | 216 | 115 | 5 | 19 | 227 | 1 | 215 | 6.59e-52 | 168 |
| Msa1062010 | AT1G59670.1 | 45.024 | 211 | 104 | 6 | 24 | 222 | 5 | 215 | 3.23e-49 | 161 |
| Msa1062010 | AT1G59700.1 | 44.348 | 230 | 113 | 7 | 24 | 238 | 5 | 234 | 3.05e-48 | 159 |
| Msa1062010 | AT1G10370.1 | 44.131 | 213 | 102 | 7 | 19 | 218 | 1 | 209 | 1.33e-47 | 157 |
| Msa1062010 | AT1G27130.1 | 41.441 | 222 | 118 | 6 | 21 | 230 | 2 | 223 | 4.52e-47 | 155 |
| Msa1062010 | AT1G69930.1 | 40.789 | 228 | 117 | 7 | 17 | 228 | 2 | 227 | 5.32e-46 | 153 |
| Msa1062010 | AT1G27140.1 | 38.326 | 227 | 123 | 5 | 21 | 232 | 2 | 226 | 3.26e-45 | 151 |
| Msa1062010 | AT1G78320.1 | 41.262 | 206 | 112 | 5 | 23 | 222 | 2 | 204 | 1.36e-44 | 149 |
| Msa1062010 | AT1G78340.1 | 49.677 | 155 | 75 | 3 | 24 | 176 | 3 | 156 | 2.41e-43 | 146 |
| Msa1062010 | AT1G17180.1 | 42.365 | 203 | 112 | 5 | 24 | 222 | 3 | 204 | 3.79e-43 | 145 |
| Msa1062010 | AT1G10360.1 | 40.670 | 209 | 111 | 6 | 22 | 218 | 2 | 209 | 4.24e-43 | 145 |
| Msa1062010 | AT1G78370.1 | 39.901 | 203 | 117 | 5 | 28 | 226 | 7 | 208 | 1.29e-41 | 141 |
| Msa1062010 | AT5G62480.1 | 37.719 | 228 | 126 | 6 | 23 | 235 | 6 | 232 | 3.85e-41 | 141 |
| Msa1062010 | AT1G78380.1 | 40.196 | 204 | 113 | 5 | 25 | 222 | 4 | 204 | 8.61e-41 | 139 |
| Msa1062010 | AT1G17170.1 | 38.073 | 218 | 125 | 5 | 24 | 235 | 3 | 216 | 1.05e-40 | 139 |
| Msa1062010 | AT1G53680.1 | 38.863 | 211 | 124 | 5 | 19 | 224 | 1 | 211 | 5.33e-39 | 135 |
| Msa1062010 | AT1G69920.1 | 36.967 | 211 | 121 | 5 | 21 | 219 | 30 | 240 | 1.07e-38 | 135 |
| Msa1062010 | AT1G17190.1 | 36.818 | 220 | 134 | 5 | 22 | 237 | 2 | 220 | 6.23e-38 | 132 |
| Msa1062010 | AT3G43800.1 | 38.350 | 206 | 118 | 7 | 22 | 219 | 2 | 206 | 2.22e-37 | 131 |
| Msa1062010 | AT1G78360.1 | 38.532 | 218 | 115 | 8 | 19 | 226 | 1 | 209 | 3.70e-37 | 130 |
| Msa1062010 | AT1G74590.1 | 33.766 | 231 | 141 | 5 | 19 | 238 | 1 | 230 | 3.32e-35 | 125 |
| Msa1062010 | AT1G78320.2 | 33.659 | 205 | 102 | 5 | 23 | 222 | 2 | 177 | 6.14e-28 | 105 |
| Msa1062010 | AT5G62480.3 | 29.956 | 227 | 118 | 6 | 23 | 235 | 6 | 205 | 2.45e-23 | 94.4 |
| Msa1062010 | AT5G62480.2 | 29.956 | 227 | 119 | 6 | 23 | 235 | 6 | 206 | 2.45e-23 | 94.4 |
| Msa1062010 | AT2G02380.1 | 27.143 | 210 | 138 | 7 | 23 | 220 | 9 | 215 | 1.07e-11 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATCAAAATAGAGTTAT+TGG | 0.213259 | 7_2:-52479084 | Msa1062010:exon |
| TTAAATACAATCCAGTTTAC+AGG | 0.242467 | 7_2:-52479803 | Msa1062010:CDS |
| AAAGAGCTTTGGCTCGTTTC+TGG | 0.246122 | 7_2:-52479668 | Msa1062010:CDS |
| GAAAATGACAACAATATTTC+AGG | 0.248363 | 7_2:+52479002 | None:intergenic |
| GGCATAATTTCCTTGACTAT+TGG | 0.252367 | 7_2:+52479160 | None:intergenic |
| ACTGCAATTCTGCTACTTCT+TGG | 0.255928 | 7_2:+52479242 | None:intergenic |
| TCTGCTACTTCTTGGAATAA+AGG | 0.260381 | 7_2:+52479250 | None:intergenic |
| GAATTGAAGGGAAAATTCTT+TGG | 0.311076 | 7_2:-52479316 | Msa1062010:CDS |
| CTGCTACTTCTTGGAATAAA+GGG | 0.317178 | 7_2:+52479251 | None:intergenic |
| TTACTCCATTTGTATAGCTT+TGG | 0.321457 | 7_2:+52479199 | None:intergenic |
| TTTCTCGCGTTCTTTCTTAT+CGG | 0.326801 | 7_2:+52479381 | None:intergenic |
| TAAGGATCGGAAGGCAAAAT+AGG | 0.356902 | 7_2:+52479693 | None:intergenic |
| TGAGGAAGAAGTGAAGCTTT+TGG | 0.359834 | 7_2:-52479934 | Msa1062010:CDS |
| ACAGGAACCATCCTGTAAAC+TGG | 0.376294 | 7_2:+52479792 | None:intergenic |
| TTCTTTGGAGGAGAAGAGAT+TGG | 0.382580 | 7_2:-52479301 | Msa1062010:CDS |
| TTCTCGCGTTCTTTCTTATC+GGG | 0.402746 | 7_2:+52479382 | None:intergenic |
| TGTTTGAATTTCATTTCAAA+TGG | 0.410177 | 7_2:-52479060 | Msa1062010:three_prime_UTR |
| ATTTGAACTCTAATGACAAA+TGG | 0.412047 | 7_2:+52479897 | None:intergenic |
| CGATCCTTATCAAAGAGCTT+TGG | 0.417344 | 7_2:-52479679 | Msa1062010:CDS |
| GGGTGTTGAATACAAATATT+CGG | 0.429695 | 7_2:-52479859 | Msa1062010:CDS |
| TTTGAACTCTAATGACAAAT+GGG | 0.433615 | 7_2:+52479898 | None:intergenic |
| TTGCAACACTCTCTTGACTT+TGG | 0.436843 | 7_2:+52479980 | None:intergenic |
| AGCTAGCGACGAACTATTGA+AGG | 0.446209 | 7_2:-52479359 | Msa1062010:CDS |
| CGAGCCAAAGCTCTTTGATA+AGG | 0.454417 | 7_2:+52479675 | None:intergenic |
| TCAAATTGCGCTGGAATTGA+AGG | 0.462937 | 7_2:-52479880 | Msa1062010:CDS |
| ATTTCTTGAGAATGAATTGA+AGG | 0.482186 | 7_2:-52479329 | Msa1062010:CDS |
| TTGAAGGGAAAATTCTTTGG+AGG | 0.490147 | 7_2:-52479313 | Msa1062010:CDS |
| AAGAGAGTGTTGCAAGGCTA+TGG | 0.501914 | 7_2:-52479972 | Msa1062010:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7_2:-52479725 | Msa1062010:CDS |
| CATTAGAGTTCAAATTGCGC+TGG | 0.507403 | 7_2:-52479889 | Msa1062010:CDS |
| AATTTCCAAAGCTATACAAA+TGG | 0.517213 | 7_2:-52479204 | Msa1062010:CDS |
| TTTCTTGAGAATGAATTGAA+GGG | 0.518621 | 7_2:-52479328 | Msa1062010:CDS |
| TAATTTCCTTGACTATTGGA+TGG | 0.528427 | 7_2:+52479164 | None:intergenic |
| TGGTGTGATGGCTGCATCTG+AGG | 0.543201 | 7_2:-52479952 | Msa1062010:CDS |
| CAGAATTGCAGTTATTCACA+AGG | 0.567572 | 7_2:-52479231 | Msa1062010:CDS |
| ATCAGTGTGTGGCTGCTGCA+TGG | 0.567781 | 7_2:-52479420 | Msa1062010:intron |
| CAAATTGCGCTGGAATTGAA+GGG | 0.570885 | 7_2:-52479879 | Msa1062010:CDS |
| CAAAGCTCTTTGATAAGGAT+CGG | 0.570944 | 7_2:+52479680 | None:intergenic |
| GTTGCAAGGCTATGGTGTGA+TGG | 0.586111 | 7_2:-52479964 | Msa1062010:CDS |
| ATCACACGAGACTCCGAGAT+GGG | 0.589789 | 7_2:+52479750 | None:intergenic |
| GTCTAAGTTCATTGATGACA+AGG | 0.593305 | 7_2:-52479646 | Msa1062010:intron |
| GCTCTTTGATAAGGATCGGA+AGG | 0.597711 | 7_2:+52479684 | None:intergenic |
| TGTGGCTGCTGCATGGATGT+CGG | 0.602873 | 7_2:-52479413 | Msa1062010:CDS |
| AATCACACGAGACTCCGAGA+TGG | 0.605388 | 7_2:+52479749 | None:intergenic |
| TATATCTATACAGACAAATG+AGG | 0.608543 | 7_2:-52480104 | Msa1062010:five_prime_UTR |
| TAACAACCATCCAATAGTCA+AGG | 0.609813 | 7_2:-52479170 | Msa1062010:CDS |
| ACAGACAAATGAGGCTGACG+CGG | 0.631677 | 7_2:-52480095 | Msa1062010:five_prime_UTR |
| ATACAATCCAGTTTACAGGA+TGG | 0.639625 | 7_2:-52479799 | Msa1062010:CDS |
| TCATAATGGAAATCCCATCT+CGG | 0.646463 | 7_2:-52479763 | Msa1062010:CDS |
| AGAATTGCAGTTATTCACAA+GGG | 0.647661 | 7_2:-52479230 | Msa1062010:CDS |
| AAAGTCAAGAGAGTGTTGCA+AGG | 0.691124 | 7_2:-52479978 | Msa1062010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTTTGTTTTTGTTCTTT+TGG | - | chr7_2:52478979-52478998 | Msa1062010:three_prime_UTR | 20.0% |
| !!! | CCTCTAAAACTTTTATATTT+CGG | - | chr7_2:52479103-52479122 | Msa1062010:CDS | 20.0% |
| !! | AAATATTCGGAAGAAAAATT+GGG | - | chr7_2:52479296-52479315 | Msa1062010:CDS | 20.0% |
| !! | TGTTTGAATTTCATTTCAAA+TGG | - | chr7_2:52480082-52480101 | Msa1062010:five_prime_UTR | 20.0% |
| !!! | ATACTTTGTTTTTGTTCTTT+TGG | - | chr7_2:52478979-52478998 | Msa1062010:three_prime_UTR | 20.0% |
| !!! | CCTCTAAAACTTTTATATTT+CGG | - | chr7_2:52479103-52479122 | Msa1062010:CDS | 20.0% |
| !! | AAATATTCGGAAGAAAAATT+GGG | - | chr7_2:52479296-52479315 | Msa1062010:CDS | 20.0% |
| !! | TGTTTGAATTTCATTTCAAA+TGG | - | chr7_2:52480082-52480101 | Msa1062010:five_prime_UTR | 20.0% |
| ! | TATATCTATACAGACAAATG+AGG | - | chr7_2:52479038-52479057 | Msa1062010:three_prime_UTR | 25.0% |
| !!! | CCGAAATATAAAAGTTTTAG+AGG | + | chr7_2:52479106-52479125 | None:intergenic | 25.0% |
| ! | TTTGAACTCTAATGACAAAT+GGG | + | chr7_2:52479247-52479266 | None:intergenic | 25.0% |
| ! | ATTTGAACTCTAATGACAAA+TGG | + | chr7_2:52479248-52479267 | None:intergenic | 25.0% |
| ! | CAAATATTCGGAAGAAAAAT+TGG | - | chr7_2:52479295-52479314 | Msa1062010:CDS | 25.0% |
| ! | TTAAATACAATCCAGTTTAC+AGG | - | chr7_2:52479339-52479358 | Msa1062010:CDS | 25.0% |
| ! | TTTCCATTATGAACAAAAAC+AGG | + | chr7_2:52479371-52479390 | None:intergenic | 25.0% |
| ! | ATTTCTTGAGAATGAATTGA+AGG | - | chr7_2:52479813-52479832 | Msa1062010:CDS | 25.0% |
| ! | TTTCTTGAGAATGAATTGAA+GGG | - | chr7_2:52479814-52479833 | Msa1062010:CDS | 25.0% |
| ! | AATTTCCAAAGCTATACAAA+TGG | - | chr7_2:52479938-52479957 | Msa1062010:CDS | 25.0% |
| ! | GAAAATGACAACAATATTTC+AGG | + | chr7_2:52480143-52480162 | None:intergenic | 25.0% |
| ! | AACAAAAACAAAGTATAACG+TGG | + | chr7_2:52478975-52478994 | None:intergenic | 25.0% |
| ! | TATATCTATACAGACAAATG+AGG | - | chr7_2:52479038-52479057 | Msa1062010:three_prime_UTR | 25.0% |
| !!! | CCGAAATATAAAAGTTTTAG+AGG | + | chr7_2:52479106-52479125 | None:intergenic | 25.0% |
| ! | TTTGAACTCTAATGACAAAT+GGG | + | chr7_2:52479247-52479266 | None:intergenic | 25.0% |
| ! | ATTTGAACTCTAATGACAAA+TGG | + | chr7_2:52479248-52479267 | None:intergenic | 25.0% |
| ! | CAAATATTCGGAAGAAAAAT+TGG | - | chr7_2:52479295-52479314 | Msa1062010:CDS | 25.0% |
| ! | TTAAATACAATCCAGTTTAC+AGG | - | chr7_2:52479339-52479358 | Msa1062010:CDS | 25.0% |
| ! | TTTCCATTATGAACAAAAAC+AGG | + | chr7_2:52479371-52479390 | None:intergenic | 25.0% |
| ! | ATTTCTTGAGAATGAATTGA+AGG | - | chr7_2:52479813-52479832 | Msa1062010:CDS | 25.0% |
| ! | TTTCTTGAGAATGAATTGAA+GGG | - | chr7_2:52479814-52479833 | Msa1062010:CDS | 25.0% |
| ! | AATTTCCAAAGCTATACAAA+TGG | - | chr7_2:52479938-52479957 | Msa1062010:CDS | 25.0% |
| ! | GAAAATGACAACAATATTTC+AGG | + | chr7_2:52480143-52480162 | None:intergenic | 25.0% |
| !! | GGGTGTTGAATACAAATATT+CGG | - | chr7_2:52479283-52479302 | Msa1062010:CDS | 30.0% |
| !!! | GTTCCTGTTTTTGTTCATAA+TGG | - | chr7_2:52479365-52479384 | Msa1062010:CDS | 30.0% |
| TTGAGTATATTGATGAGACT+TGG | - | chr7_2:52479417-52479436 | Msa1062010:CDS | 30.0% | |
| AAAGATGTCATAATAGACAC+TGG | + | chr7_2:52479629-52479648 | None:intergenic | 30.0% | |
| ! | TAATTTGTGAAATCAGTGTG+TGG | - | chr7_2:52479711-52479730 | Msa1062010:CDS | 30.0% |
| GAATTGAAGGGAAAATTCTT+TGG | - | chr7_2:52479826-52479845 | Msa1062010:CDS | 30.0% | |
| AGAATTGCAGTTATTCACAA+GGG | - | chr7_2:52479912-52479931 | Msa1062010:CDS | 30.0% | |
| TTACTCCATTTGTATAGCTT+TGG | + | chr7_2:52479946-52479965 | None:intergenic | 30.0% | |
| TAATTTCCTTGACTATTGGA+TGG | + | chr7_2:52479981-52480000 | None:intergenic | 30.0% | |
| ! | GCAAATTGTTGATCTTTTGA+AGG | + | chr7_2:52480006-52480025 | None:intergenic | 30.0% |
| CTGCATCAAAATAGAGTTAT+TGG | - | chr7_2:52480058-52480077 | Msa1062010:five_prime_UTR | 30.0% | |
| !! | GGGTGTTGAATACAAATATT+CGG | - | chr7_2:52479283-52479302 | Msa1062010:CDS | 30.0% |
| !!! | GTTCCTGTTTTTGTTCATAA+TGG | - | chr7_2:52479365-52479384 | Msa1062010:CDS | 30.0% |
| TTGAGTATATTGATGAGACT+TGG | - | chr7_2:52479417-52479436 | Msa1062010:CDS | 30.0% | |
| AAAGATGTCATAATAGACAC+TGG | + | chr7_2:52479629-52479648 | None:intergenic | 30.0% | |
| ! | TAATTTGTGAAATCAGTGTG+TGG | - | chr7_2:52479711-52479730 | Msa1062010:CDS | 30.0% |
| GAATTGAAGGGAAAATTCTT+TGG | - | chr7_2:52479826-52479845 | Msa1062010:CDS | 30.0% | |
| AGAATTGCAGTTATTCACAA+GGG | - | chr7_2:52479912-52479931 | Msa1062010:CDS | 30.0% | |
| TTACTCCATTTGTATAGCTT+TGG | + | chr7_2:52479946-52479965 | None:intergenic | 30.0% | |
| TAATTTCCTTGACTATTGGA+TGG | + | chr7_2:52479981-52480000 | None:intergenic | 30.0% | |
| ! | GCAAATTGTTGATCTTTTGA+AGG | + | chr7_2:52480006-52480025 | None:intergenic | 30.0% |
| CTGCATCAAAATAGAGTTAT+TGG | - | chr7_2:52480058-52480077 | Msa1062010:five_prime_UTR | 30.0% | |
| ATACAATCCAGTTTACAGGA+TGG | - | chr7_2:52479343-52479362 | Msa1062010:CDS | 35.0% | |
| ! | TCATAATGGAAATCCCATCT+CGG | - | chr7_2:52479379-52479398 | Msa1062010:CDS | 35.0% |
| CAAAGCTCTTTGATAAGGAT+CGG | + | chr7_2:52479465-52479484 | None:intergenic | 35.0% | |
| ! | GTCTAAGTTCATTGATGACA+AGG | - | chr7_2:52479496-52479515 | Msa1062010:intron | 35.0% |
| TTTCTCGCGTTCTTTCTTAT+CGG | + | chr7_2:52479764-52479783 | None:intergenic | 35.0% | |
| TTGAAGGGAAAATTCTTTGG+AGG | - | chr7_2:52479829-52479848 | Msa1062010:CDS | 35.0% | |
| ! | CTGCTACTTCTTGGAATAAA+GGG | + | chr7_2:52479894-52479913 | None:intergenic | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | + | chr7_2:52479895-52479914 | None:intergenic | 35.0% |
| CAGAATTGCAGTTATTCACA+AGG | - | chr7_2:52479911-52479930 | Msa1062010:CDS | 35.0% | |
| TAACAACCATCCAATAGTCA+AGG | - | chr7_2:52479972-52479991 | Msa1062010:CDS | 35.0% | |
| GGCATAATTTCCTTGACTAT+TGG | + | chr7_2:52479985-52480004 | None:intergenic | 35.0% | |
| ATACAATCCAGTTTACAGGA+TGG | - | chr7_2:52479343-52479362 | Msa1062010:CDS | 35.0% | |
| ! | TCATAATGGAAATCCCATCT+CGG | - | chr7_2:52479379-52479398 | Msa1062010:CDS | 35.0% |
| CAAAGCTCTTTGATAAGGAT+CGG | + | chr7_2:52479465-52479484 | None:intergenic | 35.0% | |
| ! | GTCTAAGTTCATTGATGACA+AGG | - | chr7_2:52479496-52479515 | Msa1062010:intron | 35.0% |
| TTTCTCGCGTTCTTTCTTAT+CGG | + | chr7_2:52479764-52479783 | None:intergenic | 35.0% | |
| TTGAAGGGAAAATTCTTTGG+AGG | - | chr7_2:52479829-52479848 | Msa1062010:CDS | 35.0% | |
| ! | CTGCTACTTCTTGGAATAAA+GGG | + | chr7_2:52479894-52479913 | None:intergenic | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | + | chr7_2:52479895-52479914 | None:intergenic | 35.0% |
| CAGAATTGCAGTTATTCACA+AGG | - | chr7_2:52479911-52479930 | Msa1062010:CDS | 35.0% | |
| TAACAACCATCCAATAGTCA+AGG | - | chr7_2:52479972-52479991 | Msa1062010:CDS | 35.0% | |
| GGCATAATTTCCTTGACTAT+TGG | + | chr7_2:52479985-52480004 | None:intergenic | 35.0% | |
| TTGCAACACTCTCTTGACTT+TGG | + | chr7_2:52479165-52479184 | None:intergenic | 40.0% | |
| !! | AAAGTCAAGAGAGTGTTGCA+AGG | - | chr7_2:52479164-52479183 | Msa1062010:CDS | 40.0% |
| ! | TGAGGAAGAAGTGAAGCTTT+TGG | - | chr7_2:52479208-52479227 | Msa1062010:CDS | 40.0% |
| ! | GAGGAAGAAGTGAAGCTTTT+GGG | - | chr7_2:52479209-52479228 | Msa1062010:CDS | 40.0% |
| CATTAGAGTTCAAATTGCGC+TGG | - | chr7_2:52479253-52479272 | Msa1062010:CDS | 40.0% | |
| TCAAATTGCGCTGGAATTGA+AGG | - | chr7_2:52479262-52479281 | Msa1062010:CDS | 40.0% | |
| CAAATTGCGCTGGAATTGAA+GGG | - | chr7_2:52479263-52479282 | Msa1062010:CDS | 40.0% | |
| TAAGGATCGGAAGGCAAAAT+AGG | + | chr7_2:52479452-52479471 | None:intergenic | 40.0% | |
| CGATCCTTATCAAAGAGCTT+TGG | - | chr7_2:52479463-52479482 | Msa1062010:intron | 40.0% | |
| TTCTCGCGTTCTTTCTTATC+GGG | + | chr7_2:52479763-52479782 | None:intergenic | 40.0% | |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | - | chr7_2:52479841-52479860 | Msa1062010:CDS | 40.0% |
| ! | ACTGCAATTCTGCTACTTCT+TGG | + | chr7_2:52479903-52479922 | None:intergenic | 40.0% |
| TTGCAACACTCTCTTGACTT+TGG | + | chr7_2:52479165-52479184 | None:intergenic | 40.0% | |
| !! | AAAGTCAAGAGAGTGTTGCA+AGG | - | chr7_2:52479164-52479183 | Msa1062010:CDS | 40.0% |
| ! | TGAGGAAGAAGTGAAGCTTT+TGG | - | chr7_2:52479208-52479227 | Msa1062010:CDS | 40.0% |
| ! | GAGGAAGAAGTGAAGCTTTT+GGG | - | chr7_2:52479209-52479228 | Msa1062010:CDS | 40.0% |
| CATTAGAGTTCAAATTGCGC+TGG | - | chr7_2:52479253-52479272 | Msa1062010:CDS | 40.0% | |
| TCAAATTGCGCTGGAATTGA+AGG | - | chr7_2:52479262-52479281 | Msa1062010:CDS | 40.0% | |
| CAAATTGCGCTGGAATTGAA+GGG | - | chr7_2:52479263-52479282 | Msa1062010:CDS | 40.0% | |
| TAAGGATCGGAAGGCAAAAT+AGG | + | chr7_2:52479452-52479471 | None:intergenic | 40.0% | |
| CGATCCTTATCAAAGAGCTT+TGG | - | chr7_2:52479463-52479482 | Msa1062010:intron | 40.0% | |
| TTCTCGCGTTCTTTCTTATC+GGG | + | chr7_2:52479763-52479782 | None:intergenic | 40.0% | |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | - | chr7_2:52479841-52479860 | Msa1062010:CDS | 40.0% |
| ! | ACTGCAATTCTGCTACTTCT+TGG | + | chr7_2:52479903-52479922 | None:intergenic | 40.0% |
| !! | AAGAGAGTGTTGCAAGGCTA+TGG | - | chr7_2:52479170-52479189 | Msa1062010:CDS | 45.0% |
| !!! | AGTGAAGCTTTTGGGTTCTG+TGG | - | chr7_2:52479217-52479236 | Msa1062010:CDS | 45.0% |
| !!! | GTGAAGCTTTTGGGTTCTGT+GGG | - | chr7_2:52479218-52479237 | Msa1062010:CDS | 45.0% |
| ACAGGAACCATCCTGTAAAC+TGG | + | chr7_2:52479353-52479372 | None:intergenic | 45.0% | |
| GCTCTTTGATAAGGATCGGA+AGG | + | chr7_2:52479461-52479480 | None:intergenic | 45.0% | |
| CGAGCCAAAGCTCTTTGATA+AGG | + | chr7_2:52479470-52479489 | None:intergenic | 45.0% | |
| ! | AAAGAGCTTTGGCTCGTTTC+TGG | - | chr7_2:52479474-52479493 | Msa1062010:intron | 45.0% |
| ! | GCATTGACGCTTCAGATTGA+AGG | - | chr7_2:52479581-52479600 | Msa1062010:intron | 45.0% |
| ! | CTTCAGATTGAAGGCATGTC+TGG | - | chr7_2:52479590-52479609 | Msa1062010:intron | 45.0% |
| AGCTAGCGACGAACTATTGA+AGG | - | chr7_2:52479783-52479802 | Msa1062010:CDS | 45.0% | |
| !!! | TCTATTTTGATGCAGCAGCG+AGG | + | chr7_2:52480053-52480072 | None:intergenic | 45.0% |
| !! | AAGAGAGTGTTGCAAGGCTA+TGG | - | chr7_2:52479170-52479189 | Msa1062010:CDS | 45.0% |
| !!! | AGTGAAGCTTTTGGGTTCTG+TGG | - | chr7_2:52479217-52479236 | Msa1062010:CDS | 45.0% |
| !!! | GTGAAGCTTTTGGGTTCTGT+GGG | - | chr7_2:52479218-52479237 | Msa1062010:CDS | 45.0% |
| ACAGGAACCATCCTGTAAAC+TGG | + | chr7_2:52479353-52479372 | None:intergenic | 45.0% | |
| GCTCTTTGATAAGGATCGGA+AGG | + | chr7_2:52479461-52479480 | None:intergenic | 45.0% | |
| CGAGCCAAAGCTCTTTGATA+AGG | + | chr7_2:52479470-52479489 | None:intergenic | 45.0% | |
| ! | AAAGAGCTTTGGCTCGTTTC+TGG | - | chr7_2:52479474-52479493 | Msa1062010:intron | 45.0% |
| ! | GCATTGACGCTTCAGATTGA+AGG | - | chr7_2:52479581-52479600 | Msa1062010:intron | 45.0% |
| ! | CTTCAGATTGAAGGCATGTC+TGG | - | chr7_2:52479590-52479609 | Msa1062010:intron | 45.0% |
| AGCTAGCGACGAACTATTGA+AGG | - | chr7_2:52479783-52479802 | Msa1062010:CDS | 45.0% | |
| !!! | TCTATTTTGATGCAGCAGCG+AGG | + | chr7_2:52480053-52480072 | None:intergenic | 45.0% |
| ACAGACAAATGAGGCTGACG+CGG | - | chr7_2:52479047-52479066 | Msa1062010:three_prime_UTR | 50.0% | |
| GTTGCAAGGCTATGGTGTGA+TGG | - | chr7_2:52479178-52479197 | Msa1062010:CDS | 50.0% | |
| ATCACACGAGACTCCGAGAT+GGG | + | chr7_2:52479395-52479414 | None:intergenic | 50.0% | |
| AATCACACGAGACTCCGAGA+TGG | + | chr7_2:52479396-52479415 | None:intergenic | 50.0% | |
| ACAGACAAATGAGGCTGACG+CGG | - | chr7_2:52479047-52479066 | Msa1062010:three_prime_UTR | 50.0% | |
| GTTGCAAGGCTATGGTGTGA+TGG | - | chr7_2:52479178-52479197 | Msa1062010:CDS | 50.0% | |
| ATCACACGAGACTCCGAGAT+GGG | + | chr7_2:52479395-52479414 | None:intergenic | 50.0% | |
| AATCACACGAGACTCCGAGA+TGG | + | chr7_2:52479396-52479415 | None:intergenic | 50.0% | |
| TGGTGTGATGGCTGCATCTG+AGG | - | chr7_2:52479190-52479209 | Msa1062010:CDS | 55.0% | |
| ATCAGTGTGTGGCTGCTGCA+TGG | - | chr7_2:52479722-52479741 | Msa1062010:CDS | 55.0% | |
| TGTGGCTGCTGCATGGATGT+CGG | - | chr7_2:52479729-52479748 | Msa1062010:CDS | 55.0% | |
| TGGTGTGATGGCTGCATCTG+AGG | - | chr7_2:52479190-52479209 | Msa1062010:CDS | 55.0% | |
| ATCAGTGTGTGGCTGCTGCA+TGG | - | chr7_2:52479722-52479741 | Msa1062010:CDS | 55.0% | |
| TGTGGCTGCTGCATGGATGT+CGG | - | chr7_2:52479729-52479748 | Msa1062010:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 52478973 | 52480191 | 52478973 | ID=Msa1062010;Name=Msa1062010 |
| chr7_2 | mRNA | 52478973 | 52480191 | 52478973 | ID=Msa1062010-mRNA-1;Parent=Msa1062010;Name=Msa1062010-mRNA-1;_AED=0.37;_eAED=0.37;_QI=170|1|1|1|1|1|2|120|239 |
| chr7_2 | exon | 52478973 | 52479437 | 52478973 | ID=Msa1062010-mRNA-1:exon:9485;Parent=Msa1062010-mRNA-1 |
| chr7_2 | exon | 52479647 | 52480191 | 52479647 | ID=Msa1062010-mRNA-1:exon:9484;Parent=Msa1062010-mRNA-1 |
| chr7_2 | five_prime_UTR | 52480022 | 52480191 | 52480022 | ID=Msa1062010-mRNA-1:five_prime_utr;Parent=Msa1062010-mRNA-1 |
| chr7_2 | CDS | 52479647 | 52480021 | 52479647 | ID=Msa1062010-mRNA-1:cds;Parent=Msa1062010-mRNA-1 |
| chr7_2 | CDS | 52479093 | 52479437 | 52479093 | ID=Msa1062010-mRNA-1:cds;Parent=Msa1062010-mRNA-1 |
| chr7_2 | three_prime_UTR | 52478973 | 52479092 | 52478973 | ID=Msa1062010-mRNA-1:three_prime_utr;Parent=Msa1062010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
