Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388770 | XP_003625004.1 | 97.452 | 157 | 4 | 0 | 47 | 203 | 1 | 157 | 2.19e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388770 | Q2HW51 | 97.452 | 157 | 4 | 0 | 47 | 203 | 1 | 157 | 1.04e-103 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa0388770 | 0.813033 | 3.141152e-51 | -8.615850e-47 |
| Msa0027820 | Msa0388770 | 0.802963 | 4.370536e-49 | -8.615850e-47 |
| Msa0049790 | Msa0388770 | 0.804070 | 2.576907e-49 | -8.615850e-47 |
| Msa0081520 | Msa0388770 | 0.868309 | 7.185537e-66 | -8.615850e-47 |
| Msa0093850 | Msa0388770 | 0.808474 | 3.042649e-50 | -8.615850e-47 |
| Msa0094850 | Msa0388770 | 0.824114 | 9.617191e-54 | -8.615850e-47 |
| Msa0102870 | Msa0388770 | 0.813808 | 2.121696e-51 | -8.615850e-47 |
| Msa0129940 | Msa0388770 | 0.804850 | 1.772037e-49 | -8.615850e-47 |
| Msa0137990 | Msa0388770 | 0.801282 | 9.691073e-49 | -8.615850e-47 |
| Msa0164400 | Msa0388770 | 0.803951 | 2.728362e-49 | -8.615850e-47 |
| Msa0173890 | Msa0388770 | 0.873704 | 1.196078e-67 | -8.615850e-47 |
| Msa0174450 | Msa0388770 | 0.800787 | 1.223197e-48 | -8.615850e-47 |
| Msa0191020 | Msa0388770 | 0.809975 | 1.450328e-50 | -8.615850e-47 |
| Msa0194820 | Msa0388770 | 0.816289 | 5.972242e-52 | -8.615850e-47 |
| Msa0194840 | Msa0388770 | 0.818805 | 1.618376e-52 | -8.615850e-47 |
| Msa0195630 | Msa0388770 | 0.824888 | 6.323700e-54 | -8.615850e-47 |
| Msa0206840 | Msa0388770 | 0.854686 | 1.043412e-61 | -8.615850e-47 |
| Msa0221000 | Msa0388770 | 0.804223 | 2.394770e-49 | -8.615850e-47 |
| Msa0225100 | Msa0388770 | 0.805594 | 1.238170e-49 | -8.615850e-47 |
| Msa0233320 | Msa0388770 | 0.806934 | 6.463168e-50 | -8.615850e-47 |
| Msa0237410 | Msa0388770 | 0.820588 | 6.334697e-53 | -8.615850e-47 |
| Msa0371170 | Msa0388770 | 0.831143 | 1.972986e-55 | -8.615850e-47 |
| Msa0376630 | Msa0388770 | 0.820734 | 5.864806e-53 | -8.615850e-47 |
| Msa0378720 | Msa0388770 | 0.824207 | 9.146814e-54 | -8.615850e-47 |
| Msa0382550 | Msa0388770 | 0.823779 | 1.152287e-53 | -8.615850e-47 |
| Msa0388770 | Msa0393150 | 0.805514 | 1.286571e-49 | -8.615850e-47 |
| Msa0388770 | Msa0393440 | 0.812473 | 4.165587e-51 | -8.615850e-47 |
| Msa0388770 | Msa0415610 | 0.805852 | 1.092567e-49 | -8.615850e-47 |
| Msa0388770 | Msa0425170 | 0.802981 | 4.335006e-49 | -8.615850e-47 |
| Msa0388770 | Msa0432380 | 0.810697 | 1.013182e-50 | -8.615850e-47 |
| Msa0388770 | Msa0462070 | 0.814567 | 1.442953e-51 | -8.615850e-47 |
| Msa0388770 | Msa0465400 | 0.804865 | 1.759687e-49 | -8.615850e-47 |
| Msa0388770 | Msa0473500 | 0.802507 | 5.428258e-49 | -8.615850e-47 |
| Msa0388770 | Msa0474730 | 0.809396 | 1.932222e-50 | -8.615850e-47 |
| Msa0388770 | Msa0479170 | 0.813059 | 3.099651e-51 | -8.615850e-47 |
| Msa0388770 | Msa0479200 | 0.804103 | 2.536037e-49 | -8.615850e-47 |
| Msa0388770 | Msa0488790 | 0.824681 | 7.076195e-54 | -8.615850e-47 |
| Msa0388770 | Msa0511260 | 0.821906 | 3.147488e-53 | -8.615850e-47 |
| Msa0388770 | Msa0513160 | 0.827665 | 1.379886e-54 | -8.615850e-47 |
| Msa0388770 | Msa0525230 | 0.833312 | 5.732266e-56 | -8.615850e-47 |
| Msa0388770 | Msa0562620 | 0.809076 | 2.262008e-50 | -8.615850e-47 |
| Msa0388770 | Msa0573380 | 0.826483 | 2.646598e-54 | -8.615850e-47 |
| Msa0388770 | Msa0574390 | 0.817221 | 3.689941e-52 | -8.615850e-47 |
| Msa0388770 | Msa0576680 | 0.807872 | 4.087764e-50 | -8.615850e-47 |
| Msa0388770 | Msa0580440 | 0.847507 | 1.107197e-59 | -8.615850e-47 |
| Msa0388770 | Msa0616510 | 0.863884 | 1.809147e-64 | -8.615850e-47 |
| Msa0388770 | Msa0623330 | 0.826623 | 2.450990e-54 | -8.615850e-47 |
| Msa0388770 | Msa0626450 | 0.816027 | 6.831918e-52 | -8.615850e-47 |
| Msa0388770 | Msa0626490 | 0.814321 | 1.635314e-51 | -8.615850e-47 |
| Msa0388770 | Msa0628670 | 0.805474 | 1.311639e-49 | -8.615850e-47 |
| Msa0388770 | Msa0638480 | 0.813383 | 2.632245e-51 | -8.615850e-47 |
| Msa0388770 | Msa0664600 | 0.811230 | 7.767776e-51 | -8.615850e-47 |
| Msa0388770 | Msa0664910 | 0.801344 | 9.412935e-49 | -8.615850e-47 |
| Msa0388770 | Msa0699840 | 0.867649 | 1.171307e-65 | -8.615850e-47 |
| Msa0388770 | Msa0726690 | 0.812116 | 4.984018e-51 | -8.615850e-47 |
| Msa0388770 | Msa0734260 | 0.803879 | 2.823373e-49 | -8.615850e-47 |
| Msa0388770 | Msa0742650 | 0.820488 | 6.678455e-53 | -8.615850e-47 |
| Msa0388770 | Msa0742740 | 0.829298 | 5.567769e-55 | -8.615850e-47 |
| Msa0388770 | Msa0782740 | 0.804898 | 1.731912e-49 | -8.615850e-47 |
| Msa0388770 | Msa0782760 | 0.811140 | 8.125971e-51 | -8.615850e-47 |
| Msa0388770 | Msa0796160 | 0.841126 | 5.738946e-58 | -8.615850e-47 |
| Msa0388770 | Msa0820390 | 0.822830 | 1.920109e-53 | -8.615850e-47 |
| Msa0388770 | Msa0823820 | 0.846424 | 2.190631e-59 | -8.615850e-47 |
| Msa0388770 | Msa0833760 | 0.826409 | 2.756269e-54 | -8.615850e-47 |
| Msa0388770 | Msa0846730 | 0.805971 | 1.031438e-49 | -8.615850e-47 |
| Msa0388770 | Msa0863010 | 0.835653 | 1.480408e-56 | -8.615850e-47 |
| Msa0388770 | Msa0902760 | 0.802073 | 6.669033e-49 | -8.615850e-47 |
| Msa0388770 | Msa0972100 | 0.805655 | 1.202248e-49 | -8.615850e-47 |
| Msa0388770 | Msa0996680 | 0.808817 | 2.570681e-50 | -8.615850e-47 |
| Msa0388770 | Msa0997430 | 0.802805 | 4.712208e-49 | -8.615850e-47 |
| Msa0388770 | Msa1013400 | 0.801333 | 9.459967e-49 | -8.615850e-47 |
| Msa0388770 | Msa1020630 | 0.992182 | 8.917277e-192 | -8.615850e-47 |
| Msa0388770 | Msa1023290 | 0.807683 | 4.485039e-50 | -8.615850e-47 |
| Msa0388770 | Msa1024740 | 0.809834 | 1.555156e-50 | -8.615850e-47 |
| Msa0388770 | Msa1031930 | 0.864819 | 9.242295e-65 | -8.615850e-47 |
| Msa0388770 | Msa1062010 | 0.802386 | 5.749466e-49 | -8.615850e-47 |
| Msa0388770 | Msa1071770 | 0.846867 | 1.658509e-59 | -8.615850e-47 |
| Msa0388770 | Msa1093530 | 0.803033 | 4.228710e-49 | -8.615850e-47 |
| Msa0388770 | Msa1094190 | 0.808355 | 3.225467e-50 | -8.615850e-47 |
| Msa0388770 | Msa1113800 | 0.973051 | 8.885875e-136 | -8.615850e-47 |
| Msa0388770 | Msa1118600 | 0.801587 | 8.392609e-49 | -8.615850e-47 |
| Msa0388770 | Msa1132700 | 0.828517 | 8.602014e-55 | -8.615850e-47 |
| Msa0388770 | Msa1150820 | 0.839666 | 1.382780e-57 | -8.615850e-47 |
| Msa0388770 | Msa1158830 | 0.838548 | 2.693568e-57 | -8.615850e-47 |
| Msa0388770 | Msa1160500 | 0.961454 | 1.013495e-119 | -8.615850e-47 |
| Msa0388770 | Msa1165740 | 0.802420 | 5.657207e-49 | -8.615850e-47 |
| Msa0388770 | Msa1174530 | 0.800797 | 1.217750e-48 | -8.615850e-47 |
| Msa0388770 | Msa1181190 | 0.854578 | 1.121107e-61 | -8.615850e-47 |
| Msa0388770 | Msa1184330 | 0.876769 | 1.072824e-68 | -8.615850e-47 |
| Msa0388770 | Msa1208160 | 0.810080 | 1.377225e-50 | -8.615850e-47 |
| Msa0388770 | Msa1218600 | 0.800762 | 1.237838e-48 | -8.615850e-47 |
| Msa0388770 | Msa1226840 | 0.824473 | 7.919247e-54 | -8.615850e-47 |
| Msa0388770 | Msa1227940 | 0.870548 | 1.342768e-66 | -8.615850e-47 |
| Msa0388770 | Msa1271040 | 0.814471 | 1.515139e-51 | -8.615850e-47 |
| Msa0388770 | Msa1276660 | 0.803892 | 2.806145e-49 | -8.615850e-47 |
| Msa0388770 | Msa1284120 | 0.812491 | 4.128051e-51 | -8.615850e-47 |
| Msa0388770 | Msa1308140 | 0.830589 | 2.696623e-55 | -8.615850e-47 |
| Msa0388770 | Msa1341890 | 0.867492 | 1.314946e-65 | -8.615850e-47 |
| Msa0388770 | Msa1356830 | 0.856680 | 2.731330e-62 | -8.615850e-47 |
| Msa0388770 | Msa1405340 | 0.800645 | 1.307845e-48 | -8.615850e-47 |
| Msa0388770 | Msa1422580 | 0.821711 | 3.492232e-53 | -8.615850e-47 |
| Msa0388770 | Msa1429840 | 0.813823 | 2.105547e-51 | -8.615850e-47 |
| Msa0388770 | Msa1432500 | 0.813074 | 3.075963e-51 | -8.615850e-47 |
| Msa0388770 | Msa1437940 | 0.854259 | 1.386964e-61 | -8.615850e-47 |
| Msa0388770 | Msa1440960 | 0.803791 | 2.945420e-49 | -8.615850e-47 |
| Msa0388770 | Msa1442820 | 0.815158 | 1.066646e-51 | -8.615850e-47 |
| Msa0388770 | Msa1445190 | 0.827185 | 1.798939e-54 | -8.615850e-47 |
| Msa0388770 | Msa1460390 | 0.819990 | 8.689277e-53 | -8.615850e-47 |
| Msa0388770 | Msa1465010 | 0.823769 | 1.158965e-53 | -8.615850e-47 |
| Msa0243600 | Msa0388770 | 0.824307 | 8.667153e-54 | -8.615850e-47 |
| Msa0249540 | Msa0388770 | 0.837305 | 5.623139e-57 | -8.615850e-47 |
| Msa0266350 | Msa0388770 | 0.802940 | 4.419515e-49 | -8.615850e-47 |
| Msa0267920 | Msa0388770 | 0.826113 | 3.240953e-54 | -8.615850e-47 |
| Msa0287740 | Msa0388770 | 0.806544 | 7.811785e-50 | -8.615850e-47 |
| Msa0297790 | Msa0388770 | 0.826673 | 2.384861e-54 | -8.615850e-47 |
| Msa0300180 | Msa0388770 | 0.810555 | 1.087621e-50 | -8.615850e-47 |
| Msa0300270 | Msa0388770 | 0.815104 | 1.096648e-51 | -8.615850e-47 |
| Msa0300320 | Msa0388770 | 0.817309 | 3.525023e-52 | -8.615850e-47 |
| Msa0319940 | Msa0388770 | 0.804761 | 1.849380e-49 | -8.615850e-47 |
| Msa0326590 | Msa0388770 | 0.832681 | 8.227840e-56 | -8.615850e-47 |
| Msa0335800 | Msa0388770 | 0.845937 | 2.973363e-59 | -8.615850e-47 |
| Msa0337700 | Msa0388770 | 0.802300 | 5.989102e-49 | -8.615850e-47 |
| Msa0341690 | Msa0388770 | 0.822670 | 2.092523e-53 | -8.615850e-47 |
| Msa0342010 | Msa0388770 | 0.800715 | 1.265759e-48 | -8.615850e-47 |
| Msa0346060 | Msa0388770 | 0.822902 | 1.847007e-53 | -8.615850e-47 |
| Msa0361080 | Msa0388770 | 0.846973 | 1.551483e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388770 | MtrunA17_Chr7g0256291 | 97.452 | 157 | 4 | 0 | 47 | 203 | 1 | 157 | 2.01e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388770 | AT2G41200.1 | 44.444 | 162 | 84 | 3 | 47 | 203 | 1 | 161 | 2.45e-39 | 132 |
Find 47 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAAGTTCCTCCGCTTT+GGG | 0.168009 | 3_1:-93259190 | None:intergenic |
| CCTACTCCTCGGTAGAATTC+TGG | 0.227742 | 3_1:-93258986 | None:intergenic |
| TCATAGAATTTATCTATAAT+TGG | 0.255004 | 3_1:-93258932 | None:intergenic |
| CTTCTCAAGTTCCTCCGCTT+TGG | 0.271530 | 3_1:-93259191 | None:intergenic |
| GTGAATAAAACTTGTTTCCT+TGG | 0.293386 | 3_1:-93258638 | None:intergenic |
| AGACCTTTATAAAGAATAAA+AGG | 0.313419 | 3_1:-93258660 | None:intergenic |
| TGTAAAAGTGCAAAGTATAA+AGG | 0.360195 | 3_1:-93259912 | None:intergenic |
| GATTATGAAAGAGATGATAA+AGG | 0.392683 | 3_1:+93259673 | Msa0388770:CDS |
| GTGTTAATTTCTTCAAAGAT+TGG | 0.394794 | 3_1:-93258770 | None:intergenic |
| GAAAAGAAGGCCAAGGAACT+TGG | 0.400216 | 3_1:+93258908 | Msa0388770:CDS |
| TAGAGAACATTGGATATCTT+AGG | 0.414632 | 3_1:-93258614 | None:intergenic |
| GCATATAGAGATGTCTATAA+TGG | 0.420605 | 3_1:-93260018 | None:intergenic |
| AAAGAGATGATAAAGGAATC+AGG | 0.421896 | 3_1:+93259680 | Msa0388770:CDS |
| TCATCTCTTTCATAATCTCC+TGG | 0.424347 | 3_1:-93259667 | None:intergenic |
| ATTGACAAAAGCAGAATTCC+AGG | 0.425391 | 3_1:+93259649 | Msa0388770:CDS |
| GTTACAATGAGGTAGATATA+TGG | 0.427607 | 3_1:-93258705 | None:intergenic |
| CTACTCCTCGGTAGAATTCT+GGG | 0.431018 | 3_1:-93258985 | None:intergenic |
| TGAATAAAACTTGTTTCCTT+GGG | 0.433160 | 3_1:-93258637 | None:intergenic |
| TATAATTGGTCCAAGTTCCT+TGG | 0.449567 | 3_1:-93258918 | None:intergenic |
| GAAGCACTCTTATACATCTT+CGG | 0.498360 | 3_1:+93259725 | Msa0388770:CDS |
| ACTGTGACTGAAGTGATCCC+TGG | 0.504884 | 3_1:-93259818 | None:intergenic |
| TTTCCTTGGGTAGAGAACAT+TGG | 0.510869 | 3_1:-93258624 | None:intergenic |
| CAACCACATTGCAGCTAGGT+TGG | 0.520161 | 3_1:-93259886 | None:intergenic |
| GTATTGTAGGAACACCATAA+AGG | 0.522447 | 3_1:+93259614 | Msa0388770:intron |
| AATTCATTTGGAATTGCTTG+AGG | 0.522690 | 3_1:-93259788 | None:intergenic |
| CTGTTTGTTAAGCAAAGAGT+GGG | 0.530709 | 3_1:+93259764 | Msa0388770:CDS |
| TGCAGGAACTGATGAAAAGA+AGG | 0.536275 | 3_1:+93258895 | Msa0388770:intron |
| CCAGAATTCTACCGAGGAGT+AGG | 0.546883 | 3_1:+93258986 | Msa0388770:CDS |
| ATAAAGGAATCAGGATTCAC+TGG | 0.550946 | 3_1:+93259689 | Msa0388770:CDS |
| TCTCAAGTTCCTCCGCTTTG+GGG | 0.555223 | 3_1:-93259189 | None:intergenic |
| CGACTATCTCGCCTACTCCT+CGG | 0.559020 | 3_1:-93258997 | None:intergenic |
| ATTCACTGGCGTGGGAGCAA+AGG | 0.560009 | 3_1:+93259703 | Msa0388770:CDS |
| GAATCAGGATTCACTGGCGT+GGG | 0.566503 | 3_1:+93259695 | Msa0388770:CDS |
| TATCCAATGTTCTCTACCCA+AGG | 0.583409 | 3_1:+93258621 | Msa0388770:exon |
| CAAAGCGGAGGAACTTGAGA+AGG | 0.590274 | 3_1:+93259192 | Msa0388770:CDS |
| TCTGTTTGTTAAGCAAAGAG+TGG | 0.593550 | 3_1:+93259763 | Msa0388770:CDS |
| GGAATCAGGATTCACTGGCG+TGG | 0.595088 | 3_1:+93259694 | Msa0388770:CDS |
| AACTGATGAAAAGAAGGCCA+AGG | 0.610768 | 3_1:+93258901 | Msa0388770:CDS |
| GCTACAACCACATTGCAGCT+AGG | 0.617537 | 3_1:-93259890 | None:intergenic |
| GTTCAAACTCCCCAAAGCGG+AGG | 0.639414 | 3_1:+93259180 | Msa0388770:CDS |
| TTAACAAACAGAGCAGTCAC+AGG | 0.646447 | 3_1:-93259752 | None:intergenic |
| AGATGAAACTCGTTACAATG+AGG | 0.671901 | 3_1:-93258716 | None:intergenic |
| TCTTTGAAGAAATTAACACC+AGG | 0.679978 | 3_1:+93258774 | Msa0388770:CDS |
| GACTTCCCAGAATTCTACCG+AGG | 0.719997 | 3_1:+93258980 | Msa0388770:CDS |
| TCAGTTCAAACTCCCCAAAG+CGG | 0.723294 | 3_1:+93259177 | Msa0388770:CDS |
| TGTTTGTTAAGCAAAGAGTG+GGG | 0.726737 | 3_1:+93259765 | Msa0388770:CDS |
| TGACCAACCTAGCTGCAATG+TGG | 0.766615 | 3_1:+93259883 | Msa0388770:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTAAAATTGTAATTA+TGG | + | chr3_1:93259279-93259298 | Msa0388770:intron | 10.0% |
| !!! | TTTTTTTTTTAATGTATTGT+AGG | + | chr3_1:93259601-93259620 | Msa0388770:intron | 10.0% |
| !!! | TATGTTTAAAATTGTAATTA+TGG | + | chr3_1:93259279-93259298 | Msa0388770:intron | 10.0% |
| !!! | TTTTTTTTTTAATGTATTGT+AGG | + | chr3_1:93259601-93259620 | Msa0388770:intron | 10.0% |
| !! | TCATAGAATTTATCTATAAT+TGG | - | chr3_1:93258935-93258954 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTATCACCT+AGG | + | chr3_1:93259086-93259105 | Msa0388770:intron | 15.0% |
| !!! | TATCTCATTATCTTATATTT+TGG | + | chr3_1:93259240-93259259 | Msa0388770:intron | 15.0% |
| !! | TCATAGAATTTATCTATAAT+TGG | - | chr3_1:93258935-93258954 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTATCACCT+AGG | + | chr3_1:93259086-93259105 | Msa0388770:intron | 15.0% |
| !!! | TATCTCATTATCTTATATTT+TGG | + | chr3_1:93259240-93259259 | Msa0388770:intron | 15.0% |
| !!! | TCACCTTTTATTCTTTATAA+AGG | + | chr3_1:93258657-93258676 | Msa0388770:CDS | 20.0% |
| !! | AGACCTTTATAAAGAATAAA+AGG | - | chr3_1:93258663-93258682 | None:intergenic | 20.0% |
| !!! | TTTTAATGAAAAATTGATGC+AGG | + | chr3_1:93258878-93258897 | Msa0388770:intron | 20.0% |
| !! | AAGATATAAAAAATGCTTCA+AGG | + | chr3_1:93258957-93258976 | Msa0388770:CDS | 20.0% |
| !! | AGATATAAAAAATGCTTCAA+GGG | + | chr3_1:93258958-93258977 | Msa0388770:CDS | 20.0% |
| !!! | GAGAGAAATTTAAGTTTTTT+AGG | - | chr3_1:93259544-93259563 | None:intergenic | 20.0% |
| !!! | TCACCTTTTATTCTTTATAA+AGG | + | chr3_1:93258657-93258676 | Msa0388770:CDS | 20.0% |
| !! | AGACCTTTATAAAGAATAAA+AGG | - | chr3_1:93258663-93258682 | None:intergenic | 20.0% |
| !!! | TTTTAATGAAAAATTGATGC+AGG | + | chr3_1:93258878-93258897 | Msa0388770:intron | 20.0% |
| !! | AAGATATAAAAAATGCTTCA+AGG | + | chr3_1:93258957-93258976 | Msa0388770:CDS | 20.0% |
| !! | AGATATAAAAAATGCTTCAA+GGG | + | chr3_1:93258958-93258977 | Msa0388770:CDS | 20.0% |
| !!! | GAGAGAAATTTAAGTTTTTT+AGG | - | chr3_1:93259544-93259563 | None:intergenic | 20.0% |
| !! | TGAATAAAACTTGTTTCCTT+GGG | - | chr3_1:93258640-93258659 | None:intergenic | 25.0% |
| ! | GTGTTAATTTCTTCAAAGAT+TGG | - | chr3_1:93258773-93258792 | None:intergenic | 25.0% |
| !! | TACAACTTTTCATCATTCTA+TGG | + | chr3_1:93259124-93259143 | Msa0388770:intron | 25.0% |
| !!! | CATGCTATTTTTTGTAAACT+TGG | + | chr3_1:93259402-93259421 | Msa0388770:intron | 25.0% |
| !!! | ATTTAAGTTTTTTAGGCCTA+AGG | - | chr3_1:93259537-93259556 | None:intergenic | 25.0% |
| ! | TAAATTTCTCTCATGTAACA+TGG | + | chr3_1:93259552-93259571 | Msa0388770:intron | 25.0% |
| !!! | ATTCCTTGTTTTTTCCTTTA+TGG | - | chr3_1:93259631-93259650 | None:intergenic | 25.0% |
| ! | GATTATGAAAGAGATGATAA+AGG | + | chr3_1:93259673-93259692 | Msa0388770:CDS | 25.0% |
| !! | CAAATGAATTTTTCATTCCA+GGG | + | chr3_1:93259801-93259820 | Msa0388770:CDS | 25.0% |
| !! | TGTAAAAGTGCAAAGTATAA+AGG | - | chr3_1:93259915-93259934 | None:intergenic | 25.0% |
| !! | TGAATAAAACTTGTTTCCTT+GGG | - | chr3_1:93258640-93258659 | None:intergenic | 25.0% |
| ! | GTGTTAATTTCTTCAAAGAT+TGG | - | chr3_1:93258773-93258792 | None:intergenic | 25.0% |
| !! | TACAACTTTTCATCATTCTA+TGG | + | chr3_1:93259124-93259143 | Msa0388770:intron | 25.0% |
| !!! | CATGCTATTTTTTGTAAACT+TGG | + | chr3_1:93259402-93259421 | Msa0388770:intron | 25.0% |
| !!! | ATTTAAGTTTTTTAGGCCTA+AGG | - | chr3_1:93259537-93259556 | None:intergenic | 25.0% |
| ! | TAAATTTCTCTCATGTAACA+TGG | + | chr3_1:93259552-93259571 | Msa0388770:intron | 25.0% |
| !!! | ATTCCTTGTTTTTTCCTTTA+TGG | - | chr3_1:93259631-93259650 | None:intergenic | 25.0% |
| ! | GATTATGAAAGAGATGATAA+AGG | + | chr3_1:93259673-93259692 | Msa0388770:CDS | 25.0% |
| !! | CAAATGAATTTTTCATTCCA+GGG | + | chr3_1:93259801-93259820 | Msa0388770:CDS | 25.0% |
| !! | TGTAAAAGTGCAAAGTATAA+AGG | - | chr3_1:93259915-93259934 | None:intergenic | 25.0% |
| TAGAGAACATTGGATATCTT+AGG | - | chr3_1:93258617-93258636 | None:intergenic | 30.0% | |
| ! | GTGAATAAAACTTGTTTCCT+TGG | - | chr3_1:93258641-93258660 | None:intergenic | 30.0% |
| GTTACAATGAGGTAGATATA+TGG | - | chr3_1:93258708-93258727 | None:intergenic | 30.0% | |
| TCAAAGCCAAACAAAAAGAT+GGG | + | chr3_1:93258747-93258766 | Msa0388770:CDS | 30.0% | |
| ! | TCTTTGAAGAAATTAACACC+AGG | + | chr3_1:93258774-93258793 | Msa0388770:CDS | 30.0% |
| TAACTGAGAAAAAGTTTCCT+AGG | - | chr3_1:93259106-93259125 | None:intergenic | 30.0% | |
| AGGGAGCTTAATAAAAAGTT+TGG | + | chr3_1:93259148-93259167 | Msa0388770:intron | 30.0% | |
| TAGTGATGTTGTAACAATTG+TGG | + | chr3_1:93259330-93259349 | Msa0388770:intron | 30.0% | |
| TTTAACTGAAGAGAACTTCA+AGG | + | chr3_1:93259490-93259509 | Msa0388770:intron | 30.0% | |
| ACACCATAAAGGAAAAAACA+AGG | + | chr3_1:93259625-93259644 | Msa0388770:CDS | 30.0% | |
| AAAGAGATGATAAAGGAATC+AGG | + | chr3_1:93259680-93259699 | Msa0388770:CDS | 30.0% | |
| ! | AATTCATTTGGAATTGCTTG+AGG | - | chr3_1:93259791-93259810 | None:intergenic | 30.0% |
| CCTGGAATGAAAAATTCATT+TGG | - | chr3_1:93259803-93259822 | None:intergenic | 30.0% | |
| ! | CCAAATGAATTTTTCATTCC+AGG | + | chr3_1:93259800-93259819 | Msa0388770:CDS | 30.0% |
| GCATATAGAGATGTCTATAA+TGG | - | chr3_1:93260021-93260040 | None:intergenic | 30.0% | |
| TAGAGAACATTGGATATCTT+AGG | - | chr3_1:93258617-93258636 | None:intergenic | 30.0% | |
| ! | GTGAATAAAACTTGTTTCCT+TGG | - | chr3_1:93258641-93258660 | None:intergenic | 30.0% |
| GTTACAATGAGGTAGATATA+TGG | - | chr3_1:93258708-93258727 | None:intergenic | 30.0% | |
| TCAAAGCCAAACAAAAAGAT+GGG | + | chr3_1:93258747-93258766 | Msa0388770:CDS | 30.0% | |
| ! | TCTTTGAAGAAATTAACACC+AGG | + | chr3_1:93258774-93258793 | Msa0388770:CDS | 30.0% |
| TAACTGAGAAAAAGTTTCCT+AGG | - | chr3_1:93259106-93259125 | None:intergenic | 30.0% | |
| AGGGAGCTTAATAAAAAGTT+TGG | + | chr3_1:93259148-93259167 | Msa0388770:intron | 30.0% | |
| TAGTGATGTTGTAACAATTG+TGG | + | chr3_1:93259330-93259349 | Msa0388770:intron | 30.0% | |
| TTTAACTGAAGAGAACTTCA+AGG | + | chr3_1:93259490-93259509 | Msa0388770:intron | 30.0% | |
| ACACCATAAAGGAAAAAACA+AGG | + | chr3_1:93259625-93259644 | Msa0388770:CDS | 30.0% | |
| AAAGAGATGATAAAGGAATC+AGG | + | chr3_1:93259680-93259699 | Msa0388770:CDS | 30.0% | |
| ! | AATTCATTTGGAATTGCTTG+AGG | - | chr3_1:93259791-93259810 | None:intergenic | 30.0% |
| CCTGGAATGAAAAATTCATT+TGG | - | chr3_1:93259803-93259822 | None:intergenic | 30.0% | |
| ! | CCAAATGAATTTTTCATTCC+AGG | + | chr3_1:93259800-93259819 | Msa0388770:CDS | 30.0% |
| GCATATAGAGATGTCTATAA+TGG | - | chr3_1:93260021-93260040 | None:intergenic | 30.0% | |
| AGATGAAACTCGTTACAATG+AGG | - | chr3_1:93258719-93258738 | None:intergenic | 35.0% | |
| GTCAAAGCCAAACAAAAAGA+TGG | + | chr3_1:93258746-93258765 | Msa0388770:CDS | 35.0% | |
| TGAGAGTTAGATATAGAACC+TGG | - | chr3_1:93258795-93258814 | None:intergenic | 35.0% | |
| TATAATTGGTCCAAGTTCCT+TGG | - | chr3_1:93258921-93258940 | None:intergenic | 35.0% | |
| ! | ACTTTTCATCATTCTATGGC+AGG | + | chr3_1:93259128-93259147 | Msa0388770:intron | 35.0% |
| ! | CTTTTCATCATTCTATGGCA+GGG | + | chr3_1:93259129-93259148 | Msa0388770:intron | 35.0% |
| GATGTTGTAACAATTGTGGT+CGG | + | chr3_1:93259334-93259353 | Msa0388770:intron | 35.0% | |
| TGGCTATATACAACTAAACG+AGG | + | chr3_1:93259422-93259441 | Msa0388770:intron | 35.0% | |
| TCTAATAAGACAGTCACCTT+AGG | + | chr3_1:93259518-93259537 | Msa0388770:intron | 35.0% | |
| GTATTGTAGGAACACCATAA+AGG | + | chr3_1:93259614-93259633 | Msa0388770:intron | 35.0% | |
| ATTGACAAAAGCAGAATTCC+AGG | + | chr3_1:93259649-93259668 | Msa0388770:CDS | 35.0% | |
| TCATCTCTTTCATAATCTCC+TGG | - | chr3_1:93259670-93259689 | None:intergenic | 35.0% | |
| ATAAAGGAATCAGGATTCAC+TGG | + | chr3_1:93259689-93259708 | Msa0388770:CDS | 35.0% | |
| ! | GAAGCACTCTTATACATCTT+CGG | + | chr3_1:93259725-93259744 | Msa0388770:CDS | 35.0% |
| ! | TCTGTTTGTTAAGCAAAGAG+TGG | + | chr3_1:93259763-93259782 | Msa0388770:CDS | 35.0% |
| ! | CTGTTTGTTAAGCAAAGAGT+GGG | + | chr3_1:93259764-93259783 | Msa0388770:CDS | 35.0% |
| ! | TGTTTGTTAAGCAAAGAGTG+GGG | + | chr3_1:93259765-93259784 | Msa0388770:CDS | 35.0% |
| AGATGAAACTCGTTACAATG+AGG | - | chr3_1:93258719-93258738 | None:intergenic | 35.0% | |
| GTCAAAGCCAAACAAAAAGA+TGG | + | chr3_1:93258746-93258765 | Msa0388770:CDS | 35.0% | |
| TGAGAGTTAGATATAGAACC+TGG | - | chr3_1:93258795-93258814 | None:intergenic | 35.0% | |
| TATAATTGGTCCAAGTTCCT+TGG | - | chr3_1:93258921-93258940 | None:intergenic | 35.0% | |
| ! | ACTTTTCATCATTCTATGGC+AGG | + | chr3_1:93259128-93259147 | Msa0388770:intron | 35.0% |
| ! | CTTTTCATCATTCTATGGCA+GGG | + | chr3_1:93259129-93259148 | Msa0388770:intron | 35.0% |
| GATGTTGTAACAATTGTGGT+CGG | + | chr3_1:93259334-93259353 | Msa0388770:intron | 35.0% | |
| TGGCTATATACAACTAAACG+AGG | + | chr3_1:93259422-93259441 | Msa0388770:intron | 35.0% | |
| TCTAATAAGACAGTCACCTT+AGG | + | chr3_1:93259518-93259537 | Msa0388770:intron | 35.0% | |
| GTATTGTAGGAACACCATAA+AGG | + | chr3_1:93259614-93259633 | Msa0388770:intron | 35.0% | |
| ATTGACAAAAGCAGAATTCC+AGG | + | chr3_1:93259649-93259668 | Msa0388770:CDS | 35.0% | |
| TCATCTCTTTCATAATCTCC+TGG | - | chr3_1:93259670-93259689 | None:intergenic | 35.0% | |
| ATAAAGGAATCAGGATTCAC+TGG | + | chr3_1:93259689-93259708 | Msa0388770:CDS | 35.0% | |
| ! | GAAGCACTCTTATACATCTT+CGG | + | chr3_1:93259725-93259744 | Msa0388770:CDS | 35.0% |
| ! | TCTGTTTGTTAAGCAAAGAG+TGG | + | chr3_1:93259763-93259782 | Msa0388770:CDS | 35.0% |
| ! | CTGTTTGTTAAGCAAAGAGT+GGG | + | chr3_1:93259764-93259783 | Msa0388770:CDS | 35.0% |
| ! | TGTTTGTTAAGCAAAGAGTG+GGG | + | chr3_1:93259765-93259784 | Msa0388770:CDS | 35.0% |
| TATCCAATGTTCTCTACCCA+AGG | + | chr3_1:93258621-93258640 | Msa0388770:exon | 40.0% | |
| TTTCCTTGGGTAGAGAACAT+TGG | - | chr3_1:93258627-93258646 | None:intergenic | 40.0% | |
| !! | GATTGGCCCATCTTTTTGTT+TGG | - | chr3_1:93258756-93258775 | None:intergenic | 40.0% |
| TGCAGGAACTGATGAAAAGA+AGG | + | chr3_1:93258895-93258914 | Msa0388770:intron | 40.0% | |
| AACTGATGAAAAGAAGGCCA+AGG | + | chr3_1:93258901-93258920 | Msa0388770:CDS | 40.0% | |
| TACAACTAAACGAGGCGAAA+TGG | + | chr3_1:93259430-93259449 | Msa0388770:intron | 40.0% | |
| AACTGAAGAGAACTTCAAGG+AGG | + | chr3_1:93259493-93259512 | Msa0388770:intron | 40.0% | |
| TTAACAAACAGAGCAGTCAC+AGG | - | chr3_1:93259755-93259774 | None:intergenic | 40.0% | |
| TATCCAATGTTCTCTACCCA+AGG | + | chr3_1:93258621-93258640 | Msa0388770:exon | 40.0% | |
| TTTCCTTGGGTAGAGAACAT+TGG | - | chr3_1:93258627-93258646 | None:intergenic | 40.0% | |
| !! | GATTGGCCCATCTTTTTGTT+TGG | - | chr3_1:93258756-93258775 | None:intergenic | 40.0% |
| TGCAGGAACTGATGAAAAGA+AGG | + | chr3_1:93258895-93258914 | Msa0388770:intron | 40.0% | |
| AACTGATGAAAAGAAGGCCA+AGG | + | chr3_1:93258901-93258920 | Msa0388770:CDS | 40.0% | |
| TACAACTAAACGAGGCGAAA+TGG | + | chr3_1:93259430-93259449 | Msa0388770:intron | 40.0% | |
| AACTGAAGAGAACTTCAAGG+AGG | + | chr3_1:93259493-93259512 | Msa0388770:intron | 40.0% | |
| TTAACAAACAGAGCAGTCAC+AGG | - | chr3_1:93259755-93259774 | None:intergenic | 40.0% | |
| GAAAAGAAGGCCAAGGAACT+TGG | + | chr3_1:93258908-93258927 | Msa0388770:CDS | 45.0% | |
| CTACTCCTCGGTAGAATTCT+GGG | - | chr3_1:93258988-93259007 | None:intergenic | 45.0% | |
| TCAGTTCAAACTCCCCAAAG+CGG | + | chr3_1:93259177-93259196 | Msa0388770:CDS | 45.0% | |
| TTCTCAAGTTCCTCCGCTTT+GGG | - | chr3_1:93259193-93259212 | None:intergenic | 45.0% | |
| TGAATTCGCGACCACAATCT+CGG | + | chr3_1:93259374-93259393 | Msa0388770:intron | 45.0% | |
| CATGGTGTGTGTGCAATCAA+TGG | + | chr3_1:93259570-93259589 | Msa0388770:intron | 45.0% | |
| GAAAAGAAGGCCAAGGAACT+TGG | + | chr3_1:93258908-93258927 | Msa0388770:CDS | 45.0% | |
| CTACTCCTCGGTAGAATTCT+GGG | - | chr3_1:93258988-93259007 | None:intergenic | 45.0% | |
| TCAGTTCAAACTCCCCAAAG+CGG | + | chr3_1:93259177-93259196 | Msa0388770:CDS | 45.0% | |
| TTCTCAAGTTCCTCCGCTTT+GGG | - | chr3_1:93259193-93259212 | None:intergenic | 45.0% | |
| TGAATTCGCGACCACAATCT+CGG | + | chr3_1:93259374-93259393 | Msa0388770:intron | 45.0% | |
| CATGGTGTGTGTGCAATCAA+TGG | + | chr3_1:93259570-93259589 | Msa0388770:intron | 45.0% | |
| GACTTCCCAGAATTCTACCG+AGG | + | chr3_1:93258980-93258999 | Msa0388770:CDS | 50.0% | |
| CCTACTCCTCGGTAGAATTC+TGG | - | chr3_1:93258989-93259008 | None:intergenic | 50.0% | |
| CCAGAATTCTACCGAGGAGT+AGG | + | chr3_1:93258986-93259005 | Msa0388770:CDS | 50.0% | |
| TCTCAAGTTCCTCCGCTTTG+GGG | - | chr3_1:93259192-93259211 | None:intergenic | 50.0% | |
| CTTCTCAAGTTCCTCCGCTT+TGG | - | chr3_1:93259194-93259213 | None:intergenic | 50.0% | |
| CAAAGCGGAGGAACTTGAGA+AGG | + | chr3_1:93259192-93259211 | Msa0388770:CDS | 50.0% | |
| GAATTCGCGACCACAATCTC+GGG | + | chr3_1:93259375-93259394 | Msa0388770:intron | 50.0% | |
| AGCATGCAAACCCGAGATTG+TGG | - | chr3_1:93259388-93259407 | None:intergenic | 50.0% | |
| GAATCAGGATTCACTGGCGT+GGG | + | chr3_1:93259695-93259714 | Msa0388770:CDS | 50.0% | |
| ACTGTGACTGAAGTGATCCC+TGG | - | chr3_1:93259821-93259840 | None:intergenic | 50.0% | |
| TGACCAACCTAGCTGCAATG+TGG | + | chr3_1:93259883-93259902 | Msa0388770:three_prime_UTR | 50.0% | |
| CAACCACATTGCAGCTAGGT+TGG | - | chr3_1:93259889-93259908 | None:intergenic | 50.0% | |
| GCTACAACCACATTGCAGCT+AGG | - | chr3_1:93259893-93259912 | None:intergenic | 50.0% | |
| GACTTCCCAGAATTCTACCG+AGG | + | chr3_1:93258980-93258999 | Msa0388770:CDS | 50.0% | |
| CCTACTCCTCGGTAGAATTC+TGG | - | chr3_1:93258989-93259008 | None:intergenic | 50.0% | |
| CCAGAATTCTACCGAGGAGT+AGG | + | chr3_1:93258986-93259005 | Msa0388770:CDS | 50.0% | |
| TCTCAAGTTCCTCCGCTTTG+GGG | - | chr3_1:93259192-93259211 | None:intergenic | 50.0% | |
| CTTCTCAAGTTCCTCCGCTT+TGG | - | chr3_1:93259194-93259213 | None:intergenic | 50.0% | |
| CAAAGCGGAGGAACTTGAGA+AGG | + | chr3_1:93259192-93259211 | Msa0388770:CDS | 50.0% | |
| GAATTCGCGACCACAATCTC+GGG | + | chr3_1:93259375-93259394 | Msa0388770:intron | 50.0% | |
| AGCATGCAAACCCGAGATTG+TGG | - | chr3_1:93259388-93259407 | None:intergenic | 50.0% | |
| GAATCAGGATTCACTGGCGT+GGG | + | chr3_1:93259695-93259714 | Msa0388770:CDS | 50.0% | |
| ACTGTGACTGAAGTGATCCC+TGG | - | chr3_1:93259821-93259840 | None:intergenic | 50.0% | |
| TGACCAACCTAGCTGCAATG+TGG | + | chr3_1:93259883-93259902 | Msa0388770:three_prime_UTR | 50.0% | |
| CAACCACATTGCAGCTAGGT+TGG | - | chr3_1:93259889-93259908 | None:intergenic | 50.0% | |
| GCTACAACCACATTGCAGCT+AGG | - | chr3_1:93259893-93259912 | None:intergenic | 50.0% | |
| CGACTATCTCGCCTACTCCT+CGG | - | chr3_1:93259000-93259019 | None:intergenic | 55.0% | |
| GTTCAAACTCCCCAAAGCGG+AGG | + | chr3_1:93259180-93259199 | Msa0388770:CDS | 55.0% | |
| GGAATCAGGATTCACTGGCG+TGG | + | chr3_1:93259694-93259713 | Msa0388770:CDS | 55.0% | |
| ATTCACTGGCGTGGGAGCAA+AGG | + | chr3_1:93259703-93259722 | Msa0388770:CDS | 55.0% | |
| CGACTATCTCGCCTACTCCT+CGG | - | chr3_1:93259000-93259019 | None:intergenic | 55.0% | |
| GTTCAAACTCCCCAAAGCGG+AGG | + | chr3_1:93259180-93259199 | Msa0388770:CDS | 55.0% | |
| GGAATCAGGATTCACTGGCG+TGG | + | chr3_1:93259694-93259713 | Msa0388770:CDS | 55.0% | |
| ATTCACTGGCGTGGGAGCAA+AGG | + | chr3_1:93259703-93259722 | Msa0388770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 93258543 | 93260088 | 93258543 | ID=Msa0388770;Name=Msa0388770 |
| chr3_1 | mRNA | 93258543 | 93260088 | 93258543 | ID=Msa0388770-mRNA-1;Parent=Msa0388770;Name=Msa0388770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=84|1|1|1|1|1|4|217|203 |
| chr3_1 | exon | 93258543 | 93258795 | 93258543 | ID=Msa0388770-mRNA-1:exon:26297;Parent=Msa0388770-mRNA-1 |
| chr3_1 | exon | 93258900 | 93259020 | 93258900 | ID=Msa0388770-mRNA-1:exon:26298;Parent=Msa0388770-mRNA-1 |
| chr3_1 | exon | 93259150 | 93259222 | 93259150 | ID=Msa0388770-mRNA-1:exon:26299;Parent=Msa0388770-mRNA-1 |
| chr3_1 | exon | 93259623 | 93260088 | 93259623 | ID=Msa0388770-mRNA-1:exon:26300;Parent=Msa0388770-mRNA-1 |
| chr3_1 | five_prime_UTR | 93258543 | 93258626 | 93258543 | ID=Msa0388770-mRNA-1:five_prime_utr;Parent=Msa0388770-mRNA-1 |
| chr3_1 | CDS | 93258627 | 93258795 | 93258627 | ID=Msa0388770-mRNA-1:cds;Parent=Msa0388770-mRNA-1 |
| chr3_1 | CDS | 93258900 | 93259020 | 93258900 | ID=Msa0388770-mRNA-1:cds;Parent=Msa0388770-mRNA-1 |
| chr3_1 | CDS | 93259150 | 93259222 | 93259150 | ID=Msa0388770-mRNA-1:cds;Parent=Msa0388770-mRNA-1 |
| chr3_1 | CDS | 93259623 | 93259871 | 93259623 | ID=Msa0388770-mRNA-1:cds;Parent=Msa0388770-mRNA-1 |
| chr3_1 | three_prime_UTR | 93259872 | 93260088 | 93259872 | ID=Msa0388770-mRNA-1:three_prime_utr;Parent=Msa0388770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
