Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020630 | XP_003625004.1 | 97.452 | 157 | 4 | 0 | 47 | 203 | 1 | 157 | 2.19e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020630 | Q2HW51 | 97.452 | 157 | 4 | 0 | 47 | 203 | 1 | 157 | 1.04e-103 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa1020630 | 0.806612 | 7.558225e-50 | -8.615850e-47 |
| Msa0009760 | Msa1020630 | 0.800031 | 1.744194e-48 | -8.615850e-47 |
| Msa0027820 | Msa1020630 | 0.806401 | 8.376604e-50 | -8.615850e-47 |
| Msa0049790 | Msa1020630 | 0.803401 | 3.547237e-49 | -8.615850e-47 |
| Msa0075170 | Msa1020630 | 0.806372 | 8.494093e-50 | -8.615850e-47 |
| Msa0081520 | Msa1020630 | 0.870629 | 1.262673e-66 | -8.615850e-47 |
| Msa0090520 | Msa1020630 | 0.806845 | 6.749727e-50 | -8.615850e-47 |
| Msa0093850 | Msa1020630 | 0.808809 | 2.580229e-50 | -8.615850e-47 |
| Msa0094850 | Msa1020630 | 0.819208 | 1.310213e-52 | -8.615850e-47 |
| Msa0102870 | Msa1020630 | 0.828304 | 9.686173e-55 | -8.615850e-47 |
| Msa0616510 | Msa1020630 | 0.863788 | 1.938975e-64 | -8.615850e-47 |
| Msa0623330 | Msa1020630 | 0.825257 | 5.173099e-54 | -8.615850e-47 |
| Msa0626450 | Msa1020630 | 0.818103 | 2.333943e-52 | -8.615850e-47 |
| Msa0626490 | Msa1020630 | 0.816516 | 5.311010e-52 | -8.615850e-47 |
| Msa0628670 | Msa1020630 | 0.811259 | 7.656502e-51 | -8.615850e-47 |
| Msa0638480 | Msa1020630 | 0.815314 | 9.849758e-52 | -8.615850e-47 |
| Msa0662340 | Msa1020630 | 0.805586 | 1.242762e-49 | -8.615850e-47 |
| Msa0664600 | Msa1020630 | 0.813619 | 2.335500e-51 | -8.615850e-47 |
| Msa0664910 | Msa1020630 | 0.800759 | 1.239298e-48 | -8.615850e-47 |
| Msa0697160 | Msa1020630 | 0.802050 | 6.741311e-49 | -8.615850e-47 |
| Msa0699840 | Msa1020630 | 0.869019 | 4.235752e-66 | -8.615850e-47 |
| Msa0726690 | Msa1020630 | 0.824124 | 9.565231e-54 | -8.615850e-47 |
| Msa0727640 | Msa1020630 | 0.801988 | 6.944385e-49 | -8.615850e-47 |
| Msa0742650 | Msa1020630 | 0.816324 | 5.863783e-52 | -8.615850e-47 |
| Msa0742740 | Msa1020630 | 0.826548 | 2.553544e-54 | -8.615850e-47 |
| Msa0782740 | Msa1020630 | 0.803028 | 4.238859e-49 | -8.615850e-47 |
| Msa0782760 | Msa1020630 | 0.806926 | 6.488128e-50 | -8.615850e-47 |
| Msa0796160 | Msa1020630 | 0.852234 | 5.277372e-61 | -8.615850e-47 |
| Msa0820390 | Msa1020630 | 0.823693 | 1.207519e-53 | -8.615850e-47 |
| Msa0823820 | Msa1020630 | 0.843836 | 1.096439e-58 | -8.615850e-47 |
| Msa0833760 | Msa1020630 | 0.838044 | 3.633081e-57 | -8.615850e-47 |
| Msa0129940 | Msa1020630 | 0.808365 | 3.209546e-50 | -8.615850e-47 |
| Msa0137990 | Msa1020630 | 0.808939 | 2.419967e-50 | -8.615850e-47 |
| Msa0173890 | Msa1020630 | 0.875848 | 2.228938e-68 | -8.615850e-47 |
| Msa0174450 | Msa1020630 | 0.802062 | 6.704441e-49 | -8.615850e-47 |
| Msa0183900 | Msa1020630 | 0.804941 | 1.695857e-49 | -8.615850e-47 |
| Msa0191020 | Msa1020630 | 0.808196 | 3.488247e-50 | -8.615850e-47 |
| Msa0194820 | Msa1020630 | 0.811668 | 6.239677e-51 | -8.615850e-47 |
| Msa0194840 | Msa1020630 | 0.814915 | 1.208256e-51 | -8.615850e-47 |
| Msa0195630 | Msa1020630 | 0.829199 | 5.882157e-55 | -8.615850e-47 |
| Msa0206840 | Msa1020630 | 0.860592 | 1.854828e-63 | -8.615850e-47 |
| Msa0218810 | Msa1020630 | 0.804898 | 1.731796e-49 | -8.615850e-47 |
| Msa0221000 | Msa1020630 | 0.808811 | 2.578375e-50 | -8.615850e-47 |
| Msa0225100 | Msa1020630 | 0.806416 | 8.313866e-50 | -8.615850e-47 |
| Msa0233320 | Msa1020630 | 0.805546 | 1.267045e-49 | -8.615850e-47 |
| Msa0237410 | Msa1020630 | 0.825328 | 4.977654e-54 | -8.615850e-47 |
| Msa0371170 | Msa1020630 | 0.833118 | 6.409375e-56 | -8.615850e-47 |
| Msa0376630 | Msa1020630 | 0.826872 | 2.137461e-54 | -8.615850e-47 |
| Msa0378720 | Msa1020630 | 0.829685 | 4.482062e-55 | -8.615850e-47 |
| Msa0382550 | Msa1020630 | 0.826619 | 2.456005e-54 | -8.615850e-47 |
| Msa0388770 | Msa1020630 | 0.992182 | 8.917277e-192 | -8.615850e-47 |
| Msa0393150 | Msa1020630 | 0.807747 | 4.346982e-50 | -8.615850e-47 |
| Msa0393440 | Msa1020630 | 0.821142 | 4.725512e-53 | -8.615850e-47 |
| Msa0415610 | Msa1020630 | 0.813290 | 2.758819e-51 | -8.615850e-47 |
| Msa0425170 | Msa1020630 | 0.800878 | 1.172002e-48 | -8.615850e-47 |
| Msa0432380 | Msa1020630 | 0.809556 | 1.785233e-50 | -8.615850e-47 |
| Msa0462070 | Msa1020630 | 0.812150 | 4.899420e-51 | -8.615850e-47 |
| Msa0465400 | Msa1020630 | 0.808965 | 2.389239e-50 | -8.615850e-47 |
| Msa0473500 | Msa1020630 | 0.802880 | 4.548406e-49 | -8.615850e-47 |
| Msa0474730 | Msa1020630 | 0.811636 | 6.340013e-51 | -8.615850e-47 |
| Msa0479170 | Msa1020630 | 0.821682 | 3.546219e-53 | -8.615850e-47 |
| Msa0479200 | Msa1020630 | 0.810699 | 1.012462e-50 | -8.615850e-47 |
| Msa0996680 | Msa1020630 | 0.810503 | 1.115941e-50 | -8.615850e-47 |
| Msa0997430 | Msa1020630 | 0.803333 | 3.664278e-49 | -8.615850e-47 |
| Msa1013400 | Msa1020630 | 0.804894 | 1.735380e-49 | -8.615850e-47 |
| Msa1020630 | Msa1023290 | 0.816350 | 5.785306e-52 | -8.615850e-47 |
| Msa1020630 | Msa1024740 | 0.808819 | 2.567650e-50 | -8.615850e-47 |
| Msa1020630 | Msa1031930 | 0.867956 | 9.334019e-66 | -8.615850e-47 |
| Msa1020630 | Msa1035960 | 0.804487 | 2.109588e-49 | -8.615850e-47 |
| Msa1020630 | Msa1062010 | 0.806511 | 7.939286e-50 | -8.615850e-47 |
| Msa1020630 | Msa1071770 | 0.854018 | 1.626844e-61 | -8.615850e-47 |
| Msa1020630 | Msa1093530 | 0.808127 | 3.608419e-50 | -8.615850e-47 |
| Msa1020630 | Msa1094190 | 0.808750 | 2.656170e-50 | -8.615850e-47 |
| Msa1020630 | Msa1113800 | 0.980442 | 3.142136e-150 | -8.615850e-47 |
| Msa1020630 | Msa1118600 | 0.812095 | 5.038137e-51 | -8.615850e-47 |
| Msa1020630 | Msa1123380 | 0.801794 | 7.609422e-49 | -8.615850e-47 |
| Msa1020630 | Msa1132700 | 0.840039 | 1.105005e-57 | -8.615850e-47 |
| Msa1020630 | Msa1150820 | 0.850863 | 1.289660e-60 | -8.615850e-47 |
| Msa1020630 | Msa1158830 | 0.846940 | 1.583915e-59 | -8.615850e-47 |
| Msa1020630 | Msa1160500 | 0.969817 | 1.105532e-130 | -8.615850e-47 |
| Msa1020630 | Msa1165740 | 0.804181 | 2.443942e-49 | -8.615850e-47 |
| Msa1020630 | Msa1181190 | 0.864317 | 1.326204e-64 | -8.615850e-47 |
| Msa1020630 | Msa1183980 | 0.801829 | 7.484018e-49 | -8.615850e-47 |
| Msa1020630 | Msa1184330 | 0.872460 | 3.127945e-67 | -8.615850e-47 |
| Msa1020630 | Msa1208160 | 0.817588 | 3.050406e-52 | -8.615850e-47 |
| Msa1020630 | Msa1218600 | 0.803977 | 2.694639e-49 | -8.615850e-47 |
| Msa1020630 | Msa1226840 | 0.828707 | 7.742370e-55 | -8.615850e-47 |
| Msa1020630 | Msa1227940 | 0.869510 | 2.934562e-66 | -8.615850e-47 |
| Msa1020630 | Msa1228420 | 0.801613 | 8.291126e-49 | -8.615850e-47 |
| Msa1020630 | Msa1271040 | 0.810716 | 1.003794e-50 | -8.615850e-47 |
| Msa1020630 | Msa1276660 | 0.808113 | 3.633173e-50 | -8.615850e-47 |
| Msa1020630 | Msa1284120 | 0.814864 | 1.239877e-51 | -8.615850e-47 |
| Msa1020630 | Msa1308140 | 0.828300 | 9.707484e-55 | -8.615850e-47 |
| Msa1020630 | Msa1341890 | 0.868128 | 8.219700e-66 | -8.615850e-47 |
| Msa1020630 | Msa1356830 | 0.858191 | 9.760020e-63 | -8.615850e-47 |
| Msa1020630 | Msa1386710 | 0.800751 | 1.244462e-48 | -8.615850e-47 |
| Msa1020630 | Msa1405340 | 0.803375 | 3.592986e-49 | -8.615850e-47 |
| Msa1020630 | Msa1422580 | 0.825663 | 4.145134e-54 | -8.615850e-47 |
| Msa1020630 | Msa1429840 | 0.809020 | 2.325467e-50 | -8.615850e-47 |
| Msa1020630 | Msa1432500 | 0.814897 | 1.219333e-51 | -8.615850e-47 |
| Msa1020630 | Msa1437940 | 0.854521 | 1.164315e-61 | -8.615850e-47 |
| Msa1020630 | Msa1439610 | 0.801321 | 9.512819e-49 | -8.615850e-47 |
| Msa1020630 | Msa1440960 | 0.803750 | 3.003261e-49 | -8.615850e-47 |
| Msa1020630 | Msa1442820 | 0.810437 | 1.153355e-50 | -8.615850e-47 |
| Msa1020630 | Msa1445190 | 0.823260 | 1.524647e-53 | -8.615850e-47 |
| Msa1020630 | Msa1460390 | 0.817184 | 3.761467e-52 | -8.615850e-47 |
| Msa1020630 | Msa1465010 | 0.818040 | 2.411556e-52 | -8.615850e-47 |
| Msa0243600 | Msa1020630 | 0.822622 | 2.147148e-53 | -8.615850e-47 |
| Msa0249540 | Msa1020630 | 0.840322 | 9.325429e-58 | -8.615850e-47 |
| Msa0266350 | Msa1020630 | 0.802842 | 4.630322e-49 | -8.615850e-47 |
| Msa0267920 | Msa1020630 | 0.830789 | 2.409001e-55 | -8.615850e-47 |
| Msa0277450 | Msa1020630 | 0.804491 | 2.106239e-49 | -8.615850e-47 |
| Msa0287740 | Msa1020630 | 0.807972 | 3.891839e-50 | -8.615850e-47 |
| Msa0297790 | Msa1020630 | 0.831662 | 1.469784e-55 | -8.615850e-47 |
| Msa0300180 | Msa1020630 | 0.812486 | 4.138588e-51 | -8.615850e-47 |
| Msa0300270 | Msa1020630 | 0.820855 | 5.502605e-53 | -8.615850e-47 |
| Msa0300320 | Msa1020630 | 0.822294 | 2.558150e-53 | -8.615850e-47 |
| Msa0326590 | Msa1020630 | 0.837126 | 6.247693e-57 | -8.615850e-47 |
| Msa0335800 | Msa1020630 | 0.851150 | 1.070614e-60 | -8.615850e-47 |
| Msa0337700 | Msa1020630 | 0.814183 | 1.753929e-51 | -8.615850e-47 |
| Msa0341690 | Msa1020630 | 0.824393 | 8.269763e-54 | -8.615850e-47 |
| Msa0342010 | Msa1020630 | 0.804462 | 2.135654e-49 | -8.615850e-47 |
| Msa0346060 | Msa1020630 | 0.828488 | 8.745814e-55 | -8.615850e-47 |
| Msa0361080 | Msa1020630 | 0.854938 | 8.816847e-62 | -8.615850e-47 |
| Msa0488790 | Msa1020630 | 0.823311 | 1.483124e-53 | -8.615850e-47 |
| Msa0511260 | Msa1020630 | 0.821495 | 3.917544e-53 | -8.615850e-47 |
| Msa0513160 | Msa1020630 | 0.824397 | 8.252005e-54 | -8.615850e-47 |
| Msa0525230 | Msa1020630 | 0.827013 | 1.977613e-54 | -8.615850e-47 |
| Msa0573380 | Msa1020630 | 0.825330 | 4.971691e-54 | -8.615850e-47 |
| Msa0574390 | Msa1020630 | 0.827848 | 1.247194e-54 | -8.615850e-47 |
| Msa0576680 | Msa1020630 | 0.814169 | 1.767013e-51 | -8.615850e-47 |
| Msa0580440 | Msa1020630 | 0.850895 | 1.263386e-60 | -8.615850e-47 |
| Msa0588090 | Msa1020630 | 0.807034 | 6.156397e-50 | -8.615850e-47 |
| Msa0846730 | Msa1020630 | 0.802815 | 4.691360e-49 | -8.615850e-47 |
| Msa0861600 | Msa1020630 | 0.800284 | 1.549109e-48 | -8.615850e-47 |
| Msa0863010 | Msa1020630 | 0.835617 | 1.512264e-56 | -8.615850e-47 |
| Msa0902760 | Msa1020630 | 0.806858 | 6.707408e-50 | -8.615850e-47 |
| Msa0964310 | Msa1020630 | 0.802485 | 5.486994e-49 | -8.615850e-47 |
| Msa0972100 | Msa1020630 | 0.813184 | 2.909755e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020630 | MtrunA17_Chr7g0256291 | 97.452 | 157 | 4 | 0 | 47 | 203 | 1 | 157 | 2.01e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020630 | AT2G41200.1 | 44.444 | 162 | 84 | 3 | 47 | 203 | 1 | 161 | 2.45e-39 | 132 |
Find 47 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAAGTTCCTCCGCTTT+GGG | 0.168009 | 7_1:-44394887 | None:intergenic |
| CCTACTCCTCGGTAGAATTC+TGG | 0.227742 | 7_1:-44394683 | None:intergenic |
| TCATAGAATTTATCTATAAT+TGG | 0.255004 | 7_1:-44394629 | None:intergenic |
| CTTCTCAAGTTCCTCCGCTT+TGG | 0.271530 | 7_1:-44394888 | None:intergenic |
| GTGAATAAAACTTGTTTCCT+TGG | 0.293386 | 7_1:-44394335 | None:intergenic |
| AGACCTTTATAAAGAATAAA+AGG | 0.313419 | 7_1:-44394357 | None:intergenic |
| TGTAAAAGTGCAAAGTATAA+AGG | 0.360195 | 7_1:-44395610 | None:intergenic |
| GATTATGAAAGAGATGATAA+AGG | 0.392683 | 7_1:+44395371 | Msa1020630:CDS |
| GTGTTAATTTCTTCAAAGAT+TGG | 0.394794 | 7_1:-44394467 | None:intergenic |
| GAAAAGAAGGCCAAGGAACT+TGG | 0.400216 | 7_1:+44394605 | Msa1020630:CDS |
| TAGAGAACATTGGATATCTT+AGG | 0.414632 | 7_1:-44394311 | None:intergenic |
| GCATATAGAGATGTCTATAA+TGG | 0.420605 | 7_1:-44395716 | None:intergenic |
| AAAGAGATGATAAAGGAATC+AGG | 0.421896 | 7_1:+44395378 | Msa1020630:CDS |
| TCATCTCTTTCATAATCTCC+TGG | 0.424347 | 7_1:-44395365 | None:intergenic |
| ATTGACAAAAGCAGAATTCC+AGG | 0.425391 | 7_1:+44395347 | Msa1020630:CDS |
| GTTACAATGAGGTAGATATA+TGG | 0.427607 | 7_1:-44394402 | None:intergenic |
| CTACTCCTCGGTAGAATTCT+GGG | 0.431018 | 7_1:-44394682 | None:intergenic |
| TGAATAAAACTTGTTTCCTT+GGG | 0.433160 | 7_1:-44394334 | None:intergenic |
| TATAATTGGTCCAAGTTCCT+TGG | 0.449567 | 7_1:-44394615 | None:intergenic |
| GAAGCACTCTTATACATCTT+CGG | 0.498360 | 7_1:+44395423 | Msa1020630:CDS |
| ACTGTGACTGAAGTGATCCC+TGG | 0.504884 | 7_1:-44395516 | None:intergenic |
| TTTCCTTGGGTAGAGAACAT+TGG | 0.510869 | 7_1:-44394321 | None:intergenic |
| CAACCACATTGCAGCTAGGT+TGG | 0.520161 | 7_1:-44395584 | None:intergenic |
| GTATTGTAGGAACACCATAA+AGG | 0.522447 | 7_1:+44395312 | Msa1020630:intron |
| AATTCATTTGGAATTGCTTG+AGG | 0.522690 | 7_1:-44395486 | None:intergenic |
| CTGTTTGTTAAGCAAAGAGT+GGG | 0.530709 | 7_1:+44395462 | Msa1020630:CDS |
| TGCAGGAACTGATGAAAAGA+AGG | 0.536275 | 7_1:+44394592 | Msa1020630:intron |
| CCAGAATTCTACCGAGGAGT+AGG | 0.546883 | 7_1:+44394683 | Msa1020630:CDS |
| ATAAAGGAATCAGGATTCAC+TGG | 0.550946 | 7_1:+44395387 | Msa1020630:CDS |
| TCTCAAGTTCCTCCGCTTTG+GGG | 0.555223 | 7_1:-44394886 | None:intergenic |
| CGACTATCTCGCCTACTCCT+CGG | 0.559020 | 7_1:-44394694 | None:intergenic |
| ATTCACTGGCGTGGGAGCAA+AGG | 0.560009 | 7_1:+44395401 | Msa1020630:CDS |
| GAATCAGGATTCACTGGCGT+GGG | 0.566503 | 7_1:+44395393 | Msa1020630:CDS |
| TATCCAATGTTCTCTACCCA+AGG | 0.583409 | 7_1:+44394318 | Msa1020630:exon |
| CAAAGCGGAGGAACTTGAGA+AGG | 0.590274 | 7_1:+44394889 | Msa1020630:CDS |
| TCTGTTTGTTAAGCAAAGAG+TGG | 0.593550 | 7_1:+44395461 | Msa1020630:CDS |
| GGAATCAGGATTCACTGGCG+TGG | 0.595088 | 7_1:+44395392 | Msa1020630:CDS |
| AACTGATGAAAAGAAGGCCA+AGG | 0.610768 | 7_1:+44394598 | Msa1020630:CDS |
| GCTACAACCACATTGCAGCT+AGG | 0.617537 | 7_1:-44395588 | None:intergenic |
| GTTCAAACTCCCCAAAGCGG+AGG | 0.639414 | 7_1:+44394877 | Msa1020630:CDS |
| TTAACAAACAGAGCAGTCAC+AGG | 0.646447 | 7_1:-44395450 | None:intergenic |
| AGATGAAACTCGTTACAATG+AGG | 0.671901 | 7_1:-44394413 | None:intergenic |
| TCTTTGAAGAAATTAACACC+AGG | 0.679978 | 7_1:+44394471 | Msa1020630:CDS |
| GACTTCCCAGAATTCTACCG+AGG | 0.719997 | 7_1:+44394677 | Msa1020630:CDS |
| TCAGTTCAAACTCCCCAAAG+CGG | 0.723294 | 7_1:+44394874 | Msa1020630:CDS |
| TGTTTGTTAAGCAAAGAGTG+GGG | 0.726737 | 7_1:+44395463 | Msa1020630:CDS |
| TGACCAACCTAGCTGCAATG+TGG | 0.766615 | 7_1:+44395581 | Msa1020630:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTAAAATTGTAATTA+TGG | + | chr7_1:44394976-44394995 | Msa1020630:intron | 10.0% |
| !!! | TTTTTTTTTTAATGTATTGT+AGG | + | chr7_1:44395299-44395318 | Msa1020630:intron | 10.0% |
| !!! | TATGTTTAAAATTGTAATTA+TGG | + | chr7_1:44394976-44394995 | Msa1020630:intron | 10.0% |
| !!! | TTTTTTTTTTAATGTATTGT+AGG | + | chr7_1:44395299-44395318 | Msa1020630:intron | 10.0% |
| !! | TCATAGAATTTATCTATAAT+TGG | - | chr7_1:44394632-44394651 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTATCACCT+AGG | + | chr7_1:44394783-44394802 | Msa1020630:intron | 15.0% |
| !!! | TATCTCATTATCTTATATTT+TGG | + | chr7_1:44394937-44394956 | Msa1020630:intron | 15.0% |
| !! | TCATAGAATTTATCTATAAT+TGG | - | chr7_1:44394632-44394651 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTATCACCT+AGG | + | chr7_1:44394783-44394802 | Msa1020630:intron | 15.0% |
| !!! | TATCTCATTATCTTATATTT+TGG | + | chr7_1:44394937-44394956 | Msa1020630:intron | 15.0% |
| !!! | TCACCTTTTATTCTTTATAA+AGG | + | chr7_1:44394354-44394373 | Msa1020630:CDS | 20.0% |
| !! | AGACCTTTATAAAGAATAAA+AGG | - | chr7_1:44394360-44394379 | None:intergenic | 20.0% |
| !!! | TTTTAATGAAAAATTGATGC+AGG | + | chr7_1:44394575-44394594 | Msa1020630:intron | 20.0% |
| !! | AAGATATAAAAAATGCTTCA+AGG | + | chr7_1:44394654-44394673 | Msa1020630:CDS | 20.0% |
| !! | AGATATAAAAAATGCTTCAA+GGG | + | chr7_1:44394655-44394674 | Msa1020630:CDS | 20.0% |
| !!! | GAGAGAAATTTAAGTTTTTT+AGG | - | chr7_1:44395241-44395260 | None:intergenic | 20.0% |
| !!! | TCACCTTTTATTCTTTATAA+AGG | + | chr7_1:44394354-44394373 | Msa1020630:CDS | 20.0% |
| !! | AGACCTTTATAAAGAATAAA+AGG | - | chr7_1:44394360-44394379 | None:intergenic | 20.0% |
| !!! | TTTTAATGAAAAATTGATGC+AGG | + | chr7_1:44394575-44394594 | Msa1020630:intron | 20.0% |
| !! | AAGATATAAAAAATGCTTCA+AGG | + | chr7_1:44394654-44394673 | Msa1020630:CDS | 20.0% |
| !! | AGATATAAAAAATGCTTCAA+GGG | + | chr7_1:44394655-44394674 | Msa1020630:CDS | 20.0% |
| !!! | GAGAGAAATTTAAGTTTTTT+AGG | - | chr7_1:44395241-44395260 | None:intergenic | 20.0% |
| !! | TGAATAAAACTTGTTTCCTT+GGG | - | chr7_1:44394337-44394356 | None:intergenic | 25.0% |
| ! | GTGTTAATTTCTTCAAAGAT+TGG | - | chr7_1:44394470-44394489 | None:intergenic | 25.0% |
| !! | TACAACTTTTCATCATTCTA+TGG | + | chr7_1:44394821-44394840 | Msa1020630:intron | 25.0% |
| !!! | CATGCTATTTTTTGTAAACT+TGG | + | chr7_1:44395099-44395118 | Msa1020630:intron | 25.0% |
| !!! | ATTTAAGTTTTTTAGGCCTA+AGG | - | chr7_1:44395234-44395253 | None:intergenic | 25.0% |
| ! | TAAATTTCTCTCATGTAACA+TGG | + | chr7_1:44395249-44395268 | Msa1020630:intron | 25.0% |
| !!! | ATTCCTTGTTTTTTCCTTTA+TGG | - | chr7_1:44395329-44395348 | None:intergenic | 25.0% |
| ! | GATTATGAAAGAGATGATAA+AGG | + | chr7_1:44395371-44395390 | Msa1020630:CDS | 25.0% |
| !! | CAAATGAATTTTTCATTCCA+GGG | + | chr7_1:44395499-44395518 | Msa1020630:CDS | 25.0% |
| !! | TGTAAAAGTGCAAAGTATAA+AGG | - | chr7_1:44395613-44395632 | None:intergenic | 25.0% |
| !! | TGAATAAAACTTGTTTCCTT+GGG | - | chr7_1:44394337-44394356 | None:intergenic | 25.0% |
| ! | GTGTTAATTTCTTCAAAGAT+TGG | - | chr7_1:44394470-44394489 | None:intergenic | 25.0% |
| !! | TACAACTTTTCATCATTCTA+TGG | + | chr7_1:44394821-44394840 | Msa1020630:intron | 25.0% |
| !!! | CATGCTATTTTTTGTAAACT+TGG | + | chr7_1:44395099-44395118 | Msa1020630:intron | 25.0% |
| !!! | ATTTAAGTTTTTTAGGCCTA+AGG | - | chr7_1:44395234-44395253 | None:intergenic | 25.0% |
| ! | TAAATTTCTCTCATGTAACA+TGG | + | chr7_1:44395249-44395268 | Msa1020630:intron | 25.0% |
| !!! | ATTCCTTGTTTTTTCCTTTA+TGG | - | chr7_1:44395329-44395348 | None:intergenic | 25.0% |
| ! | GATTATGAAAGAGATGATAA+AGG | + | chr7_1:44395371-44395390 | Msa1020630:CDS | 25.0% |
| !! | CAAATGAATTTTTCATTCCA+GGG | + | chr7_1:44395499-44395518 | Msa1020630:CDS | 25.0% |
| !! | TGTAAAAGTGCAAAGTATAA+AGG | - | chr7_1:44395613-44395632 | None:intergenic | 25.0% |
| TAGAGAACATTGGATATCTT+AGG | - | chr7_1:44394314-44394333 | None:intergenic | 30.0% | |
| ! | GTGAATAAAACTTGTTTCCT+TGG | - | chr7_1:44394338-44394357 | None:intergenic | 30.0% |
| GTTACAATGAGGTAGATATA+TGG | - | chr7_1:44394405-44394424 | None:intergenic | 30.0% | |
| TCAAAGCCAAACAAAAAGAT+GGG | + | chr7_1:44394444-44394463 | Msa1020630:CDS | 30.0% | |
| ! | TCTTTGAAGAAATTAACACC+AGG | + | chr7_1:44394471-44394490 | Msa1020630:CDS | 30.0% |
| TAACTGAGAAAAAGTTTCCT+AGG | - | chr7_1:44394803-44394822 | None:intergenic | 30.0% | |
| AGGGAGCTTAATAAAAAGTT+TGG | + | chr7_1:44394845-44394864 | Msa1020630:intron | 30.0% | |
| TAGTGATGTTGTAACAATTG+TGG | + | chr7_1:44395027-44395046 | Msa1020630:intron | 30.0% | |
| TTTAACTGAAGAGAACTTCA+AGG | + | chr7_1:44395187-44395206 | Msa1020630:intron | 30.0% | |
| ACACCATAAAGGAAAAAACA+AGG | + | chr7_1:44395323-44395342 | Msa1020630:CDS | 30.0% | |
| AAAGAGATGATAAAGGAATC+AGG | + | chr7_1:44395378-44395397 | Msa1020630:CDS | 30.0% | |
| ! | AATTCATTTGGAATTGCTTG+AGG | - | chr7_1:44395489-44395508 | None:intergenic | 30.0% |
| CCTGGAATGAAAAATTCATT+TGG | - | chr7_1:44395501-44395520 | None:intergenic | 30.0% | |
| ! | CCAAATGAATTTTTCATTCC+AGG | + | chr7_1:44395498-44395517 | Msa1020630:CDS | 30.0% |
| GCATATAGAGATGTCTATAA+TGG | - | chr7_1:44395719-44395738 | None:intergenic | 30.0% | |
| TAGAGAACATTGGATATCTT+AGG | - | chr7_1:44394314-44394333 | None:intergenic | 30.0% | |
| ! | GTGAATAAAACTTGTTTCCT+TGG | - | chr7_1:44394338-44394357 | None:intergenic | 30.0% |
| GTTACAATGAGGTAGATATA+TGG | - | chr7_1:44394405-44394424 | None:intergenic | 30.0% | |
| TCAAAGCCAAACAAAAAGAT+GGG | + | chr7_1:44394444-44394463 | Msa1020630:CDS | 30.0% | |
| ! | TCTTTGAAGAAATTAACACC+AGG | + | chr7_1:44394471-44394490 | Msa1020630:CDS | 30.0% |
| TAACTGAGAAAAAGTTTCCT+AGG | - | chr7_1:44394803-44394822 | None:intergenic | 30.0% | |
| AGGGAGCTTAATAAAAAGTT+TGG | + | chr7_1:44394845-44394864 | Msa1020630:intron | 30.0% | |
| TAGTGATGTTGTAACAATTG+TGG | + | chr7_1:44395027-44395046 | Msa1020630:intron | 30.0% | |
| TTTAACTGAAGAGAACTTCA+AGG | + | chr7_1:44395187-44395206 | Msa1020630:intron | 30.0% | |
| ACACCATAAAGGAAAAAACA+AGG | + | chr7_1:44395323-44395342 | Msa1020630:CDS | 30.0% | |
| AAAGAGATGATAAAGGAATC+AGG | + | chr7_1:44395378-44395397 | Msa1020630:CDS | 30.0% | |
| ! | AATTCATTTGGAATTGCTTG+AGG | - | chr7_1:44395489-44395508 | None:intergenic | 30.0% |
| CCTGGAATGAAAAATTCATT+TGG | - | chr7_1:44395501-44395520 | None:intergenic | 30.0% | |
| ! | CCAAATGAATTTTTCATTCC+AGG | + | chr7_1:44395498-44395517 | Msa1020630:CDS | 30.0% |
| GCATATAGAGATGTCTATAA+TGG | - | chr7_1:44395719-44395738 | None:intergenic | 30.0% | |
| AGATGAAACTCGTTACAATG+AGG | - | chr7_1:44394416-44394435 | None:intergenic | 35.0% | |
| GTCAAAGCCAAACAAAAAGA+TGG | + | chr7_1:44394443-44394462 | Msa1020630:CDS | 35.0% | |
| TGAGAGTTAGATATAGAACC+TGG | - | chr7_1:44394492-44394511 | None:intergenic | 35.0% | |
| TATAATTGGTCCAAGTTCCT+TGG | - | chr7_1:44394618-44394637 | None:intergenic | 35.0% | |
| ! | ACTTTTCATCATTCTATGGC+AGG | + | chr7_1:44394825-44394844 | Msa1020630:intron | 35.0% |
| ! | CTTTTCATCATTCTATGGCA+GGG | + | chr7_1:44394826-44394845 | Msa1020630:intron | 35.0% |
| GATGTTGTAACAATTGTGGT+CGG | + | chr7_1:44395031-44395050 | Msa1020630:intron | 35.0% | |
| TGGCTATATACAACTAAACG+AGG | + | chr7_1:44395119-44395138 | Msa1020630:intron | 35.0% | |
| TCTAATAAGACAGTCACCTT+AGG | + | chr7_1:44395215-44395234 | Msa1020630:intron | 35.0% | |
| GTATTGTAGGAACACCATAA+AGG | + | chr7_1:44395312-44395331 | Msa1020630:intron | 35.0% | |
| ATTGACAAAAGCAGAATTCC+AGG | + | chr7_1:44395347-44395366 | Msa1020630:CDS | 35.0% | |
| TCATCTCTTTCATAATCTCC+TGG | - | chr7_1:44395368-44395387 | None:intergenic | 35.0% | |
| ATAAAGGAATCAGGATTCAC+TGG | + | chr7_1:44395387-44395406 | Msa1020630:CDS | 35.0% | |
| ! | GAAGCACTCTTATACATCTT+CGG | + | chr7_1:44395423-44395442 | Msa1020630:CDS | 35.0% |
| ! | TCTGTTTGTTAAGCAAAGAG+TGG | + | chr7_1:44395461-44395480 | Msa1020630:CDS | 35.0% |
| ! | CTGTTTGTTAAGCAAAGAGT+GGG | + | chr7_1:44395462-44395481 | Msa1020630:CDS | 35.0% |
| ! | TGTTTGTTAAGCAAAGAGTG+GGG | + | chr7_1:44395463-44395482 | Msa1020630:CDS | 35.0% |
| AGATGAAACTCGTTACAATG+AGG | - | chr7_1:44394416-44394435 | None:intergenic | 35.0% | |
| GTCAAAGCCAAACAAAAAGA+TGG | + | chr7_1:44394443-44394462 | Msa1020630:CDS | 35.0% | |
| TGAGAGTTAGATATAGAACC+TGG | - | chr7_1:44394492-44394511 | None:intergenic | 35.0% | |
| TATAATTGGTCCAAGTTCCT+TGG | - | chr7_1:44394618-44394637 | None:intergenic | 35.0% | |
| ! | ACTTTTCATCATTCTATGGC+AGG | + | chr7_1:44394825-44394844 | Msa1020630:intron | 35.0% |
| ! | CTTTTCATCATTCTATGGCA+GGG | + | chr7_1:44394826-44394845 | Msa1020630:intron | 35.0% |
| GATGTTGTAACAATTGTGGT+CGG | + | chr7_1:44395031-44395050 | Msa1020630:intron | 35.0% | |
| TGGCTATATACAACTAAACG+AGG | + | chr7_1:44395119-44395138 | Msa1020630:intron | 35.0% | |
| TCTAATAAGACAGTCACCTT+AGG | + | chr7_1:44395215-44395234 | Msa1020630:intron | 35.0% | |
| GTATTGTAGGAACACCATAA+AGG | + | chr7_1:44395312-44395331 | Msa1020630:intron | 35.0% | |
| ATTGACAAAAGCAGAATTCC+AGG | + | chr7_1:44395347-44395366 | Msa1020630:CDS | 35.0% | |
| TCATCTCTTTCATAATCTCC+TGG | - | chr7_1:44395368-44395387 | None:intergenic | 35.0% | |
| ATAAAGGAATCAGGATTCAC+TGG | + | chr7_1:44395387-44395406 | Msa1020630:CDS | 35.0% | |
| ! | GAAGCACTCTTATACATCTT+CGG | + | chr7_1:44395423-44395442 | Msa1020630:CDS | 35.0% |
| ! | TCTGTTTGTTAAGCAAAGAG+TGG | + | chr7_1:44395461-44395480 | Msa1020630:CDS | 35.0% |
| ! | CTGTTTGTTAAGCAAAGAGT+GGG | + | chr7_1:44395462-44395481 | Msa1020630:CDS | 35.0% |
| ! | TGTTTGTTAAGCAAAGAGTG+GGG | + | chr7_1:44395463-44395482 | Msa1020630:CDS | 35.0% |
| TATCCAATGTTCTCTACCCA+AGG | + | chr7_1:44394318-44394337 | Msa1020630:exon | 40.0% | |
| TTTCCTTGGGTAGAGAACAT+TGG | - | chr7_1:44394324-44394343 | None:intergenic | 40.0% | |
| !! | GATTGGCCCATCTTTTTGTT+TGG | - | chr7_1:44394453-44394472 | None:intergenic | 40.0% |
| TGCAGGAACTGATGAAAAGA+AGG | + | chr7_1:44394592-44394611 | Msa1020630:intron | 40.0% | |
| AACTGATGAAAAGAAGGCCA+AGG | + | chr7_1:44394598-44394617 | Msa1020630:CDS | 40.0% | |
| TACAACTAAACGAGGCGAAA+TGG | + | chr7_1:44395127-44395146 | Msa1020630:intron | 40.0% | |
| AACTGAAGAGAACTTCAAGG+AGG | + | chr7_1:44395190-44395209 | Msa1020630:intron | 40.0% | |
| TTAACAAACAGAGCAGTCAC+AGG | - | chr7_1:44395453-44395472 | None:intergenic | 40.0% | |
| TATCCAATGTTCTCTACCCA+AGG | + | chr7_1:44394318-44394337 | Msa1020630:exon | 40.0% | |
| TTTCCTTGGGTAGAGAACAT+TGG | - | chr7_1:44394324-44394343 | None:intergenic | 40.0% | |
| !! | GATTGGCCCATCTTTTTGTT+TGG | - | chr7_1:44394453-44394472 | None:intergenic | 40.0% |
| TGCAGGAACTGATGAAAAGA+AGG | + | chr7_1:44394592-44394611 | Msa1020630:intron | 40.0% | |
| AACTGATGAAAAGAAGGCCA+AGG | + | chr7_1:44394598-44394617 | Msa1020630:CDS | 40.0% | |
| TACAACTAAACGAGGCGAAA+TGG | + | chr7_1:44395127-44395146 | Msa1020630:intron | 40.0% | |
| AACTGAAGAGAACTTCAAGG+AGG | + | chr7_1:44395190-44395209 | Msa1020630:intron | 40.0% | |
| TTAACAAACAGAGCAGTCAC+AGG | - | chr7_1:44395453-44395472 | None:intergenic | 40.0% | |
| GAAAAGAAGGCCAAGGAACT+TGG | + | chr7_1:44394605-44394624 | Msa1020630:CDS | 45.0% | |
| CTACTCCTCGGTAGAATTCT+GGG | - | chr7_1:44394685-44394704 | None:intergenic | 45.0% | |
| TCAGTTCAAACTCCCCAAAG+CGG | + | chr7_1:44394874-44394893 | Msa1020630:CDS | 45.0% | |
| TTCTCAAGTTCCTCCGCTTT+GGG | - | chr7_1:44394890-44394909 | None:intergenic | 45.0% | |
| TGAATTCGCGACCACAATCT+CGG | + | chr7_1:44395071-44395090 | Msa1020630:intron | 45.0% | |
| CATGGTGTGTGTGCAATCAA+TGG | + | chr7_1:44395267-44395286 | Msa1020630:intron | 45.0% | |
| GAAAAGAAGGCCAAGGAACT+TGG | + | chr7_1:44394605-44394624 | Msa1020630:CDS | 45.0% | |
| CTACTCCTCGGTAGAATTCT+GGG | - | chr7_1:44394685-44394704 | None:intergenic | 45.0% | |
| TCAGTTCAAACTCCCCAAAG+CGG | + | chr7_1:44394874-44394893 | Msa1020630:CDS | 45.0% | |
| TTCTCAAGTTCCTCCGCTTT+GGG | - | chr7_1:44394890-44394909 | None:intergenic | 45.0% | |
| TGAATTCGCGACCACAATCT+CGG | + | chr7_1:44395071-44395090 | Msa1020630:intron | 45.0% | |
| CATGGTGTGTGTGCAATCAA+TGG | + | chr7_1:44395267-44395286 | Msa1020630:intron | 45.0% | |
| GACTTCCCAGAATTCTACCG+AGG | + | chr7_1:44394677-44394696 | Msa1020630:CDS | 50.0% | |
| CCTACTCCTCGGTAGAATTC+TGG | - | chr7_1:44394686-44394705 | None:intergenic | 50.0% | |
| CCAGAATTCTACCGAGGAGT+AGG | + | chr7_1:44394683-44394702 | Msa1020630:CDS | 50.0% | |
| TCTCAAGTTCCTCCGCTTTG+GGG | - | chr7_1:44394889-44394908 | None:intergenic | 50.0% | |
| CTTCTCAAGTTCCTCCGCTT+TGG | - | chr7_1:44394891-44394910 | None:intergenic | 50.0% | |
| CAAAGCGGAGGAACTTGAGA+AGG | + | chr7_1:44394889-44394908 | Msa1020630:CDS | 50.0% | |
| GAATTCGCGACCACAATCTC+GGG | + | chr7_1:44395072-44395091 | Msa1020630:intron | 50.0% | |
| AGCATGCAAACCCGAGATTG+TGG | - | chr7_1:44395085-44395104 | None:intergenic | 50.0% | |
| GAATCAGGATTCACTGGCGT+GGG | + | chr7_1:44395393-44395412 | Msa1020630:CDS | 50.0% | |
| ACTGTGACTGAAGTGATCCC+TGG | - | chr7_1:44395519-44395538 | None:intergenic | 50.0% | |
| TGACCAACCTAGCTGCAATG+TGG | + | chr7_1:44395581-44395600 | Msa1020630:three_prime_UTR | 50.0% | |
| CAACCACATTGCAGCTAGGT+TGG | - | chr7_1:44395587-44395606 | None:intergenic | 50.0% | |
| GCTACAACCACATTGCAGCT+AGG | - | chr7_1:44395591-44395610 | None:intergenic | 50.0% | |
| GACTTCCCAGAATTCTACCG+AGG | + | chr7_1:44394677-44394696 | Msa1020630:CDS | 50.0% | |
| CCTACTCCTCGGTAGAATTC+TGG | - | chr7_1:44394686-44394705 | None:intergenic | 50.0% | |
| CCAGAATTCTACCGAGGAGT+AGG | + | chr7_1:44394683-44394702 | Msa1020630:CDS | 50.0% | |
| TCTCAAGTTCCTCCGCTTTG+GGG | - | chr7_1:44394889-44394908 | None:intergenic | 50.0% | |
| CTTCTCAAGTTCCTCCGCTT+TGG | - | chr7_1:44394891-44394910 | None:intergenic | 50.0% | |
| CAAAGCGGAGGAACTTGAGA+AGG | + | chr7_1:44394889-44394908 | Msa1020630:CDS | 50.0% | |
| GAATTCGCGACCACAATCTC+GGG | + | chr7_1:44395072-44395091 | Msa1020630:intron | 50.0% | |
| AGCATGCAAACCCGAGATTG+TGG | - | chr7_1:44395085-44395104 | None:intergenic | 50.0% | |
| GAATCAGGATTCACTGGCGT+GGG | + | chr7_1:44395393-44395412 | Msa1020630:CDS | 50.0% | |
| ACTGTGACTGAAGTGATCCC+TGG | - | chr7_1:44395519-44395538 | None:intergenic | 50.0% | |
| TGACCAACCTAGCTGCAATG+TGG | + | chr7_1:44395581-44395600 | Msa1020630:three_prime_UTR | 50.0% | |
| CAACCACATTGCAGCTAGGT+TGG | - | chr7_1:44395587-44395606 | None:intergenic | 50.0% | |
| GCTACAACCACATTGCAGCT+AGG | - | chr7_1:44395591-44395610 | None:intergenic | 50.0% | |
| CGACTATCTCGCCTACTCCT+CGG | - | chr7_1:44394697-44394716 | None:intergenic | 55.0% | |
| GTTCAAACTCCCCAAAGCGG+AGG | + | chr7_1:44394877-44394896 | Msa1020630:CDS | 55.0% | |
| GGAATCAGGATTCACTGGCG+TGG | + | chr7_1:44395392-44395411 | Msa1020630:CDS | 55.0% | |
| ATTCACTGGCGTGGGAGCAA+AGG | + | chr7_1:44395401-44395420 | Msa1020630:CDS | 55.0% | |
| CGACTATCTCGCCTACTCCT+CGG | - | chr7_1:44394697-44394716 | None:intergenic | 55.0% | |
| GTTCAAACTCCCCAAAGCGG+AGG | + | chr7_1:44394877-44394896 | Msa1020630:CDS | 55.0% | |
| GGAATCAGGATTCACTGGCG+TGG | + | chr7_1:44395392-44395411 | Msa1020630:CDS | 55.0% | |
| ATTCACTGGCGTGGGAGCAA+AGG | + | chr7_1:44395401-44395420 | Msa1020630:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 44394240 | 44395786 | 44394240 | ID=Msa1020630;Name=Msa1020630 |
| chr7_1 | mRNA | 44394240 | 44395786 | 44394240 | ID=Msa1020630-mRNA-1;Parent=Msa1020630;Name=Msa1020630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=84|1|1|1|1|1|4|217|203 |
| chr7_1 | exon | 44394240 | 44394492 | 44394240 | ID=Msa1020630-mRNA-1:exon:8609;Parent=Msa1020630-mRNA-1 |
| chr7_1 | exon | 44394597 | 44394717 | 44394597 | ID=Msa1020630-mRNA-1:exon:8610;Parent=Msa1020630-mRNA-1 |
| chr7_1 | exon | 44394847 | 44394919 | 44394847 | ID=Msa1020630-mRNA-1:exon:8611;Parent=Msa1020630-mRNA-1 |
| chr7_1 | exon | 44395321 | 44395786 | 44395321 | ID=Msa1020630-mRNA-1:exon:8612;Parent=Msa1020630-mRNA-1 |
| chr7_1 | five_prime_UTR | 44394240 | 44394323 | 44394240 | ID=Msa1020630-mRNA-1:five_prime_utr;Parent=Msa1020630-mRNA-1 |
| chr7_1 | CDS | 44394324 | 44394492 | 44394324 | ID=Msa1020630-mRNA-1:cds;Parent=Msa1020630-mRNA-1 |
| chr7_1 | CDS | 44394597 | 44394717 | 44394597 | ID=Msa1020630-mRNA-1:cds;Parent=Msa1020630-mRNA-1 |
| chr7_1 | CDS | 44394847 | 44394919 | 44394847 | ID=Msa1020630-mRNA-1:cds;Parent=Msa1020630-mRNA-1 |
| chr7_1 | CDS | 44395321 | 44395569 | 44395321 | ID=Msa1020630-mRNA-1:cds;Parent=Msa1020630-mRNA-1 |
| chr7_1 | three_prime_UTR | 44395570 | 44395786 | 44395570 | ID=Msa1020630-mRNA-1:three_prime_utr;Parent=Msa1020630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
