Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023290 | XP_003623199.1 | 97.071 | 239 | 7 | 0 | 1 | 239 | 1 | 239 | 1.70e-168 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023290 | sp|P32110|GSTX6_SOYBN | 71.429 | 224 | 59 | 2 | 19 | 237 | 1 | 224 | 1.84e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023290 | G7L6H3 | 97.071 | 239 | 7 | 0 | 1 | 239 | 1 | 239 | 8.14e-169 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0742740 | Msa1023290 | 0.800875 | 1.173754e-48 | -8.615850e-47 |
| Msa0796160 | Msa1023290 | 0.820000 | 8.643698e-53 | -8.615850e-47 |
| Msa0823820 | Msa1023290 | 0.818981 | 1.475993e-52 | -8.615850e-47 |
| Msa0833760 | Msa1023290 | 0.811556 | 6.599414e-51 | -8.615850e-47 |
| Msa0388770 | Msa1023290 | 0.807683 | 4.485039e-50 | -8.615850e-47 |
| Msa1020630 | Msa1023290 | 0.816350 | 5.785306e-52 | -8.615850e-47 |
| Msa1023290 | Msa1062010 | 0.855352 | 6.683193e-62 | -8.615850e-47 |
| Msa1023290 | Msa1113800 | 0.818288 | 2.119185e-52 | -8.615850e-47 |
| Msa1023290 | Msa1132700 | 0.805334 | 1.403316e-49 | -8.615850e-47 |
| Msa1023290 | Msa1150820 | 0.845275 | 4.496715e-59 | -8.615850e-47 |
| Msa1023290 | Msa1160500 | 0.811031 | 8.580815e-51 | -8.615850e-47 |
| Msa1023290 | Msa1184330 | 0.810421 | 1.162225e-50 | -8.615850e-47 |
| Msa1023290 | Msa1227940 | 0.801413 | 9.112510e-49 | -8.615850e-47 |
| Msa0863010 | Msa1023290 | 0.816594 | 5.101319e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023290 | MtrunA17_Chr7g0240611 | 96.833 | 221 | 7 | 0 | 19 | 239 | 1 | 221 | 3.26e-158 | 437 |
| Msa1023290 | MtrunA17_Chr7g0240651 | 82.805 | 221 | 38 | 0 | 19 | 239 | 1 | 221 | 8.54e-127 | 358 |
| Msa1023290 | MtrunA17_Chr7g0240671 | 77.833 | 203 | 45 | 0 | 26 | 228 | 5 | 207 | 7.06e-117 | 333 |
| Msa1023290 | MtrunA17_Chr7g0240661 | 79.524 | 210 | 43 | 0 | 19 | 228 | 1 | 210 | 3.62e-115 | 328 |
| Msa1023290 | MtrunA17_Chr7g0240561 | 67.265 | 223 | 69 | 1 | 19 | 237 | 1 | 223 | 3.04e-109 | 313 |
| Msa1023290 | MtrunA17_Chr7g0240511 | 70.776 | 219 | 63 | 1 | 19 | 237 | 1 | 218 | 5.96e-107 | 307 |
| Msa1023290 | MtrunA17_Chr7g0240641 | 67.111 | 225 | 70 | 1 | 19 | 239 | 1 | 225 | 2.78e-106 | 306 |
| Msa1023290 | MtrunA17_Chr7g0240631 | 67.111 | 225 | 70 | 1 | 19 | 239 | 1 | 225 | 1.36e-105 | 304 |
| Msa1023290 | MtrunA17_Chr7g0240581 | 66.816 | 223 | 70 | 1 | 19 | 237 | 1 | 223 | 1.25e-104 | 301 |
| Msa1023290 | MtrunA17_Chr7g0240681 | 68.326 | 221 | 65 | 2 | 19 | 234 | 1 | 221 | 1.02e-102 | 297 |
| Msa1023290 | MtrunA17_Chr7g0240551 | 66.667 | 219 | 69 | 1 | 19 | 233 | 1 | 219 | 1.65e-102 | 296 |
| Msa1023290 | MtrunA17_Chr7g0240531 | 66.514 | 218 | 69 | 1 | 19 | 232 | 1 | 218 | 5.84e-99 | 287 |
| Msa1023290 | MtrunA17_Chr7g0240541 | 63.761 | 218 | 75 | 1 | 19 | 232 | 1 | 218 | 7.60e-97 | 282 |
| Msa1023290 | MtrunA17_Chr7g0240691 | 63.801 | 221 | 75 | 2 | 24 | 239 | 36 | 256 | 2.00e-96 | 282 |
| Msa1023290 | MtrunA17_Chr4g0008791 | 60.000 | 225 | 86 | 1 | 19 | 239 | 1 | 225 | 2.55e-92 | 270 |
| Msa1023290 | MtrunA17_Chr7g0240521 | 64.602 | 226 | 73 | 4 | 18 | 237 | 7 | 231 | 4.39e-91 | 268 |
| Msa1023290 | MtrunA17_Chr4g0008781 | 59.817 | 219 | 82 | 3 | 18 | 231 | 1 | 218 | 2.80e-89 | 263 |
| Msa1023290 | MtrunA17_Chr6g0483141 | 47.596 | 208 | 103 | 3 | 25 | 227 | 3 | 209 | 3.24e-61 | 191 |
| Msa1023290 | MtrunA17_Chr3g0132581 | 47.748 | 222 | 110 | 3 | 22 | 238 | 2 | 222 | 7.47e-61 | 191 |
| Msa1023290 | MtrunA17_Chr8g0379561 | 42.534 | 221 | 121 | 3 | 24 | 239 | 5 | 224 | 5.80e-57 | 181 |
| Msa1023290 | MtrunA17_Chr1g0196691 | 42.534 | 221 | 120 | 2 | 25 | 238 | 28 | 248 | 1.90e-54 | 175 |
| Msa1023290 | MtrunA17_Chr5g0417011 | 40.090 | 222 | 121 | 4 | 19 | 229 | 1 | 221 | 4.10e-54 | 173 |
| Msa1023290 | MtrunA17_Chr8g0379581 | 42.661 | 218 | 119 | 3 | 22 | 234 | 2 | 218 | 6.77e-54 | 173 |
| Msa1023290 | MtrunA17_Chr1g0196771 | 42.793 | 222 | 118 | 4 | 24 | 238 | 2 | 221 | 1.29e-53 | 172 |
| Msa1023290 | MtrunA17_Chr1g0196661 | 39.640 | 222 | 122 | 4 | 25 | 237 | 3 | 221 | 2.46e-50 | 164 |
| Msa1023290 | MtrunA17_Chr1g0196721 | 39.819 | 221 | 121 | 4 | 26 | 237 | 3 | 220 | 7.28e-48 | 157 |
| Msa1023290 | MtrunA17_Chr1g0212301 | 40.741 | 216 | 119 | 4 | 25 | 232 | 3 | 217 | 8.38e-48 | 157 |
| Msa1023290 | MtrunA17_Chr4g0029341 | 38.785 | 214 | 121 | 4 | 24 | 229 | 3 | 214 | 5.56e-47 | 155 |
| Msa1023290 | MtrunA17_Chr5g0415411 | 40.444 | 225 | 122 | 4 | 22 | 234 | 2 | 226 | 1.61e-46 | 154 |
| Msa1023290 | MtrunA17_Chr2g0312731 | 40.000 | 205 | 114 | 5 | 24 | 222 | 3 | 204 | 6.77e-45 | 149 |
| Msa1023290 | MtrunA17_Chr2g0312771 | 38.756 | 209 | 119 | 5 | 24 | 226 | 3 | 208 | 9.56e-45 | 149 |
| Msa1023290 | MtrunA17_Chr1g0196711 | 40.000 | 210 | 116 | 4 | 25 | 226 | 3 | 210 | 2.77e-44 | 148 |
| Msa1023290 | MtrunA17_Chr2g0312751 | 38.278 | 209 | 120 | 5 | 24 | 226 | 3 | 208 | 4.57e-44 | 147 |
| Msa1023290 | MtrunA17_Chr8g0357241 | 45.699 | 186 | 96 | 5 | 24 | 205 | 3 | 187 | 2.08e-42 | 143 |
| Msa1023290 | MtrunA17_Chr8g0357211 | 45.699 | 186 | 96 | 5 | 24 | 205 | 3 | 187 | 2.75e-42 | 143 |
| Msa1023290 | MtrunA17_Chr8g0363751 | 39.545 | 220 | 121 | 5 | 22 | 229 | 2 | 221 | 2.93e-42 | 143 |
| Msa1023290 | MtrunA17_Chr2g0312811 | 38.863 | 211 | 118 | 6 | 24 | 226 | 3 | 210 | 3.88e-42 | 142 |
| Msa1023290 | MtrunA17_Chr3g0107731 | 40.284 | 211 | 121 | 5 | 20 | 226 | 4 | 213 | 4.65e-42 | 142 |
| Msa1023290 | MtrunA17_Chr2g0312781 | 37.441 | 211 | 123 | 5 | 18 | 222 | 14 | 221 | 5.44e-42 | 142 |
| Msa1023290 | MtrunA17_Chr2g0312721 | 38.424 | 203 | 120 | 4 | 24 | 222 | 3 | 204 | 1.49e-41 | 141 |
| Msa1023290 | MtrunA17_Chr4g0069471 | 49.091 | 165 | 78 | 5 | 23 | 184 | 23 | 184 | 2.68e-41 | 140 |
| Msa1023290 | MtrunA17_Chr2g0312791 | 39.713 | 209 | 119 | 7 | 24 | 226 | 3 | 210 | 1.72e-40 | 138 |
| Msa1023290 | MtrunA17_Chr2g0312691 | 37.327 | 217 | 127 | 5 | 25 | 235 | 4 | 217 | 1.64e-39 | 135 |
| Msa1023290 | MtrunA17_Chr2g0312681 | 37.981 | 208 | 118 | 6 | 25 | 226 | 4 | 206 | 1.11e-38 | 134 |
| Msa1023290 | MtrunA17_Chr3g0107741 | 38.278 | 209 | 124 | 4 | 22 | 226 | 6 | 213 | 1.51e-38 | 133 |
| Msa1023290 | MtrunA17_Chr5g0433801 | 39.614 | 207 | 120 | 5 | 24 | 226 | 5 | 210 | 2.54e-38 | 133 |
| Msa1023290 | MtrunA17_Chr2g0312711 | 36.866 | 217 | 127 | 6 | 25 | 235 | 4 | 216 | 4.38e-34 | 122 |
| Msa1023290 | MtrunA17_Chr8g0391631 | 44.578 | 166 | 81 | 6 | 15 | 171 | 12 | 175 | 1.18e-33 | 119 |
| Msa1023290 | MtrunA17_Chr2g0313561 | 42.029 | 69 | 38 | 2 | 69 | 136 | 2 | 69 | 1.14e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023290 | AT2G29420.1 | 46.637 | 223 | 113 | 3 | 21 | 238 | 5 | 226 | 1.72e-67 | 208 |
| Msa1023290 | AT3G09270.1 | 48.416 | 221 | 106 | 5 | 23 | 236 | 4 | 223 | 5.95e-63 | 196 |
| Msa1023290 | AT2G29450.1 | 43.049 | 223 | 121 | 3 | 21 | 237 | 2 | 224 | 6.81e-57 | 181 |
| Msa1023290 | AT2G29490.1 | 45.133 | 226 | 115 | 5 | 19 | 237 | 1 | 224 | 2.79e-56 | 179 |
| Msa1023290 | AT2G29460.1 | 45.333 | 225 | 116 | 4 | 19 | 237 | 1 | 224 | 5.24e-56 | 179 |
| Msa1023290 | AT2G29480.1 | 45.089 | 224 | 113 | 5 | 19 | 233 | 1 | 223 | 1.81e-54 | 174 |
| Msa1023290 | AT2G29440.1 | 42.152 | 223 | 122 | 4 | 21 | 237 | 2 | 223 | 1.43e-51 | 167 |
| Msa1023290 | AT2G29470.1 | 43.056 | 216 | 115 | 5 | 19 | 227 | 1 | 215 | 3.73e-51 | 166 |
| Msa1023290 | AT1G59670.1 | 45.024 | 211 | 104 | 6 | 24 | 222 | 5 | 215 | 1.57e-48 | 160 |
| Msa1023290 | AT1G59700.1 | 43.723 | 231 | 115 | 7 | 23 | 238 | 4 | 234 | 6.07e-47 | 155 |
| Msa1023290 | AT1G10370.1 | 43.662 | 213 | 103 | 7 | 19 | 218 | 1 | 209 | 2.41e-46 | 154 |
| Msa1023290 | AT1G27130.1 | 40.991 | 222 | 119 | 6 | 21 | 230 | 2 | 223 | 7.40e-46 | 152 |
| Msa1023290 | AT1G69930.1 | 39.823 | 226 | 122 | 7 | 17 | 228 | 2 | 227 | 5.12e-45 | 150 |
| Msa1023290 | AT1G78320.1 | 41.262 | 206 | 112 | 5 | 23 | 222 | 2 | 204 | 9.20e-45 | 149 |
| Msa1023290 | AT1G27140.1 | 37.885 | 227 | 124 | 5 | 21 | 232 | 2 | 226 | 1.07e-43 | 147 |
| Msa1023290 | AT1G78340.1 | 49.677 | 155 | 75 | 3 | 24 | 176 | 3 | 156 | 3.41e-43 | 145 |
| Msa1023290 | AT1G17180.1 | 42.365 | 203 | 112 | 5 | 24 | 222 | 3 | 204 | 9.57e-43 | 144 |
| Msa1023290 | AT1G10360.1 | 41.627 | 209 | 109 | 7 | 22 | 218 | 2 | 209 | 1.34e-42 | 144 |
| Msa1023290 | AT1G78370.1 | 40.394 | 203 | 116 | 5 | 28 | 226 | 7 | 208 | 1.53e-42 | 144 |
| Msa1023290 | AT1G78380.1 | 41.176 | 204 | 111 | 5 | 25 | 222 | 4 | 204 | 6.22e-42 | 142 |
| Msa1023290 | AT5G62480.1 | 38.158 | 228 | 125 | 6 | 23 | 235 | 6 | 232 | 1.36e-41 | 142 |
| Msa1023290 | AT1G17170.1 | 39.815 | 216 | 124 | 4 | 24 | 235 | 3 | 216 | 6.68e-41 | 140 |
| Msa1023290 | AT1G53680.1 | 38.389 | 211 | 125 | 5 | 19 | 224 | 1 | 211 | 5.56e-39 | 135 |
| Msa1023290 | AT1G69920.1 | 36.967 | 211 | 121 | 5 | 21 | 219 | 30 | 240 | 3.52e-38 | 134 |
| Msa1023290 | AT3G43800.1 | 38.835 | 206 | 117 | 7 | 22 | 219 | 2 | 206 | 4.99e-38 | 132 |
| Msa1023290 | AT1G17190.1 | 36.818 | 220 | 134 | 5 | 22 | 237 | 2 | 220 | 8.50e-38 | 132 |
| Msa1023290 | AT1G78360.1 | 38.991 | 218 | 114 | 8 | 19 | 226 | 1 | 209 | 1.41e-37 | 131 |
| Msa1023290 | AT1G74590.1 | 33.766 | 231 | 141 | 5 | 19 | 238 | 1 | 230 | 3.99e-35 | 125 |
| Msa1023290 | AT1G78320.2 | 33.659 | 205 | 102 | 5 | 23 | 222 | 2 | 177 | 4.23e-28 | 106 |
| Msa1023290 | AT5G62480.3 | 30.396 | 227 | 117 | 6 | 23 | 235 | 6 | 205 | 7.18e-24 | 95.5 |
| Msa1023290 | AT5G62480.2 | 30.396 | 227 | 118 | 6 | 23 | 235 | 6 | 206 | 7.73e-24 | 95.5 |
| Msa1023290 | AT2G02380.1 | 28.436 | 211 | 134 | 8 | 23 | 220 | 9 | 215 | 2.58e-11 | 62.0 |
Find 51 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATCAAAATAGAGTTAT+TGG | 0.213259 | 7_1:-50645090 | Msa1023290:exon |
| TTAAATACAATCCAGTTTAC+AGG | 0.242467 | 7_1:-50645809 | Msa1023290:CDS |
| AAAGAGCTTTGGCTCGTTTC+TGG | 0.246122 | 7_1:-50645674 | Msa1023290:CDS |
| GAAAATGACAACAATATTTC+AGG | 0.248363 | 7_1:+50645008 | None:intergenic |
| GGCATAATTTCCTTGACTAT+TGG | 0.252367 | 7_1:+50645166 | None:intergenic |
| ACTGCAATTCTGCTACTTCT+TGG | 0.255928 | 7_1:+50645248 | None:intergenic |
| TCTGCTACTTCTTGGAATAA+AGG | 0.260381 | 7_1:+50645256 | None:intergenic |
| GAATTGAAGGGAAAATTCTT+TGG | 0.311076 | 7_1:-50645322 | Msa1023290:CDS |
| CTGCTACTTCTTGGAATAAA+GGG | 0.317178 | 7_1:+50645257 | None:intergenic |
| TTACTCCATTTGTATAGCTT+TGG | 0.321457 | 7_1:+50645205 | None:intergenic |
| TTTCTCGCGTTCTTTCTTAT+CGG | 0.326801 | 7_1:+50645387 | None:intergenic |
| TAAGGATCGGAAGGCAAAAT+AGG | 0.356902 | 7_1:+50645699 | None:intergenic |
| TGAGGAAGAAGTGAAGCTTT+TGG | 0.359834 | 7_1:-50645940 | Msa1023290:CDS |
| ACAGGAACCATCCTGTAAAC+TGG | 0.376294 | 7_1:+50645798 | None:intergenic |
| TTCTTTGGAGGAGAAGAGAT+TGG | 0.382580 | 7_1:-50645307 | Msa1023290:CDS |
| CAGAATTGCAGTTATTCATA+AGG | 0.392355 | 7_1:-50645237 | Msa1023290:CDS |
| TTCTCGCGTTCTTTCTTATC+GGG | 0.402746 | 7_1:+50645388 | None:intergenic |
| TGTTTGAATTTCATTTCAAA+TGG | 0.410177 | 7_1:-50645066 | Msa1023290:three_prime_UTR |
| ATTTGAACTCTAATGACAAA+TGG | 0.412047 | 7_1:+50645903 | None:intergenic |
| CGATCCTTATCAAAGAGCTT+TGG | 0.417344 | 7_1:-50645685 | Msa1023290:CDS |
| GGGTGTTGAATACAAATATT+CGG | 0.429695 | 7_1:-50645865 | Msa1023290:CDS |
| TTTGAACTCTAATGACAAAT+GGG | 0.433615 | 7_1:+50645904 | None:intergenic |
| TTGCAACACTCTCTTGACTT+TGG | 0.436843 | 7_1:+50645986 | None:intergenic |
| AGAATTGCAGTTATTCATAA+GGG | 0.438919 | 7_1:-50645236 | Msa1023290:CDS |
| AGCTAGCGACGAACTATTGA+AGG | 0.446209 | 7_1:-50645365 | Msa1023290:CDS |
| CGAGCCAAAGCTCTTTGATA+AGG | 0.454417 | 7_1:+50645681 | None:intergenic |
| TCAAATTGCGCTGGAATTGA+AGG | 0.462937 | 7_1:-50645886 | Msa1023290:CDS |
| ATTTCTTGAGAATGAATTGA+AGG | 0.482186 | 7_1:-50645335 | Msa1023290:CDS |
| TTGAAGGGAAAATTCTTTGG+AGG | 0.490147 | 7_1:-50645319 | Msa1023290:CDS |
| AAGAGAGTGTTGCAAGGCTA+TGG | 0.501914 | 7_1:-50645978 | Msa1023290:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7_1:-50645731 | Msa1023290:CDS |
| CATTAGAGTTCAAATTGCGC+TGG | 0.507403 | 7_1:-50645895 | Msa1023290:CDS |
| AATTTCCAAAGCTATACAAA+TGG | 0.517213 | 7_1:-50645210 | Msa1023290:CDS |
| TTTCTTGAGAATGAATTGAA+GGG | 0.518621 | 7_1:-50645334 | Msa1023290:CDS |
| TAATTTCCTTGACTATTGGA+TGG | 0.528427 | 7_1:+50645170 | None:intergenic |
| TGGTGTGATGGCTGCATCTG+AGG | 0.543201 | 7_1:-50645958 | Msa1023290:CDS |
| CAAATTGCGCTGGAATTGAA+GGG | 0.570885 | 7_1:-50645885 | Msa1023290:CDS |
| CAAAGCTCTTTGATAAGGAT+CGG | 0.570944 | 7_1:+50645686 | None:intergenic |
| ATCAGTGTGTGGCTGATGCA+TGG | 0.577739 | 7_1:-50645426 | Msa1023290:intron |
| GTTGCAAGGCTATGGTGTGA+TGG | 0.586111 | 7_1:-50645970 | Msa1023290:CDS |
| ATCACACGAGACTCCGAGAT+GGG | 0.589789 | 7_1:+50645756 | None:intergenic |
| GTCTAAGTTCATTGATGACA+AGG | 0.593305 | 7_1:-50645652 | Msa1023290:intron |
| GCTCTTTGATAAGGATCGGA+AGG | 0.597711 | 7_1:+50645690 | None:intergenic |
| AATCACACGAGACTCCGAGA+TGG | 0.605388 | 7_1:+50645755 | None:intergenic |
| TATATCTATACAGACAAATG+AGG | 0.608543 | 7_1:-50646110 | Msa1023290:five_prime_UTR |
| TAACAACCATCCAATAGTCA+AGG | 0.609813 | 7_1:-50645176 | Msa1023290:CDS |
| ACAGACAAATGAGGCTGACG+CGG | 0.631677 | 7_1:-50646101 | Msa1023290:five_prime_UTR |
| TGTGGCTGATGCATGGATGT+CGG | 0.633260 | 7_1:-50645419 | Msa1023290:CDS |
| ATACAATCCAGTTTACAGGA+TGG | 0.639625 | 7_1:-50645805 | Msa1023290:CDS |
| TCATAATGGAAATCCCATCT+CGG | 0.646463 | 7_1:-50645769 | Msa1023290:CDS |
| AAAGTCAAGAGAGTGTTGCA+AGG | 0.691124 | 7_1:-50645984 | Msa1023290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTTTGTTTTTGTTCTTT+TGG | - | chr7_1:50644985-50645004 | Msa1023290:three_prime_UTR | 20.0% |
| !!! | CCTCTAAAACTTTTATATTT+CGG | - | chr7_1:50645109-50645128 | Msa1023290:CDS | 20.0% |
| !! | AAATATTCGGAAGAAAAATT+GGG | - | chr7_1:50645302-50645321 | Msa1023290:CDS | 20.0% |
| !! | TGTTTGAATTTCATTTCAAA+TGG | - | chr7_1:50646088-50646107 | Msa1023290:five_prime_UTR | 20.0% |
| !!! | ATACTTTGTTTTTGTTCTTT+TGG | - | chr7_1:50644985-50645004 | Msa1023290:three_prime_UTR | 20.0% |
| !!! | CCTCTAAAACTTTTATATTT+CGG | - | chr7_1:50645109-50645128 | Msa1023290:CDS | 20.0% |
| !! | AAATATTCGGAAGAAAAATT+GGG | - | chr7_1:50645302-50645321 | Msa1023290:CDS | 20.0% |
| !! | TGTTTGAATTTCATTTCAAA+TGG | - | chr7_1:50646088-50646107 | Msa1023290:five_prime_UTR | 20.0% |
| ! | TATATCTATACAGACAAATG+AGG | - | chr7_1:50645044-50645063 | Msa1023290:three_prime_UTR | 25.0% |
| !!! | CCGAAATATAAAAGTTTTAG+AGG | + | chr7_1:50645112-50645131 | None:intergenic | 25.0% |
| ! | TTTGAACTCTAATGACAAAT+GGG | + | chr7_1:50645253-50645272 | None:intergenic | 25.0% |
| ! | ATTTGAACTCTAATGACAAA+TGG | + | chr7_1:50645254-50645273 | None:intergenic | 25.0% |
| ! | CAAATATTCGGAAGAAAAAT+TGG | - | chr7_1:50645301-50645320 | Msa1023290:CDS | 25.0% |
| ! | TTAAATACAATCCAGTTTAC+AGG | - | chr7_1:50645345-50645364 | Msa1023290:CDS | 25.0% |
| ! | TTTCCATTATGAACAAAAAC+AGG | + | chr7_1:50645377-50645396 | None:intergenic | 25.0% |
| ! | ATTTCTTGAGAATGAATTGA+AGG | - | chr7_1:50645819-50645838 | Msa1023290:CDS | 25.0% |
| ! | TTTCTTGAGAATGAATTGAA+GGG | - | chr7_1:50645820-50645839 | Msa1023290:CDS | 25.0% |
| ! | AGAATTGCAGTTATTCATAA+GGG | - | chr7_1:50645918-50645937 | Msa1023290:CDS | 25.0% |
| ! | AATTTCCAAAGCTATACAAA+TGG | - | chr7_1:50645944-50645963 | Msa1023290:CDS | 25.0% |
| ! | GAAAATGACAACAATATTTC+AGG | + | chr7_1:50646149-50646168 | None:intergenic | 25.0% |
| ! | AACAAAAACAAAGTATAACG+TGG | + | chr7_1:50644981-50645000 | None:intergenic | 25.0% |
| ! | TATATCTATACAGACAAATG+AGG | - | chr7_1:50645044-50645063 | Msa1023290:three_prime_UTR | 25.0% |
| !!! | CCGAAATATAAAAGTTTTAG+AGG | + | chr7_1:50645112-50645131 | None:intergenic | 25.0% |
| ! | TTTGAACTCTAATGACAAAT+GGG | + | chr7_1:50645253-50645272 | None:intergenic | 25.0% |
| ! | ATTTGAACTCTAATGACAAA+TGG | + | chr7_1:50645254-50645273 | None:intergenic | 25.0% |
| ! | CAAATATTCGGAAGAAAAAT+TGG | - | chr7_1:50645301-50645320 | Msa1023290:CDS | 25.0% |
| ! | TTAAATACAATCCAGTTTAC+AGG | - | chr7_1:50645345-50645364 | Msa1023290:CDS | 25.0% |
| ! | TTTCCATTATGAACAAAAAC+AGG | + | chr7_1:50645377-50645396 | None:intergenic | 25.0% |
| ! | ATTTCTTGAGAATGAATTGA+AGG | - | chr7_1:50645819-50645838 | Msa1023290:CDS | 25.0% |
| ! | TTTCTTGAGAATGAATTGAA+GGG | - | chr7_1:50645820-50645839 | Msa1023290:CDS | 25.0% |
| ! | AGAATTGCAGTTATTCATAA+GGG | - | chr7_1:50645918-50645937 | Msa1023290:CDS | 25.0% |
| ! | AATTTCCAAAGCTATACAAA+TGG | - | chr7_1:50645944-50645963 | Msa1023290:CDS | 25.0% |
| ! | GAAAATGACAACAATATTTC+AGG | + | chr7_1:50646149-50646168 | None:intergenic | 25.0% |
| !! | GGGTGTTGAATACAAATATT+CGG | - | chr7_1:50645289-50645308 | Msa1023290:CDS | 30.0% |
| !!! | GTTCCTGTTTTTGTTCATAA+TGG | - | chr7_1:50645371-50645390 | Msa1023290:CDS | 30.0% |
| TTGAGTATATTGATGAGACT+TGG | - | chr7_1:50645423-50645442 | Msa1023290:CDS | 30.0% | |
| AAAGATGTCATAATAGACAC+TGG | + | chr7_1:50645635-50645654 | None:intergenic | 30.0% | |
| ! | TAATTTGTGAAATCAGTGTG+TGG | - | chr7_1:50645717-50645736 | Msa1023290:CDS | 30.0% |
| GAATTGAAGGGAAAATTCTT+TGG | - | chr7_1:50645832-50645851 | Msa1023290:CDS | 30.0% | |
| CAGAATTGCAGTTATTCATA+AGG | - | chr7_1:50645917-50645936 | Msa1023290:CDS | 30.0% | |
| TTACTCCATTTGTATAGCTT+TGG | + | chr7_1:50645952-50645971 | None:intergenic | 30.0% | |
| TAATTTCCTTGACTATTGGA+TGG | + | chr7_1:50645987-50646006 | None:intergenic | 30.0% | |
| ! | GCAAATTGTTGATCTTTTGA+AGG | + | chr7_1:50646012-50646031 | None:intergenic | 30.0% |
| CTGCATCAAAATAGAGTTAT+TGG | - | chr7_1:50646064-50646083 | Msa1023290:five_prime_UTR | 30.0% | |
| !! | GGGTGTTGAATACAAATATT+CGG | - | chr7_1:50645289-50645308 | Msa1023290:CDS | 30.0% |
| !!! | GTTCCTGTTTTTGTTCATAA+TGG | - | chr7_1:50645371-50645390 | Msa1023290:CDS | 30.0% |
| TTGAGTATATTGATGAGACT+TGG | - | chr7_1:50645423-50645442 | Msa1023290:CDS | 30.0% | |
| AAAGATGTCATAATAGACAC+TGG | + | chr7_1:50645635-50645654 | None:intergenic | 30.0% | |
| ! | TAATTTGTGAAATCAGTGTG+TGG | - | chr7_1:50645717-50645736 | Msa1023290:CDS | 30.0% |
| GAATTGAAGGGAAAATTCTT+TGG | - | chr7_1:50645832-50645851 | Msa1023290:CDS | 30.0% | |
| CAGAATTGCAGTTATTCATA+AGG | - | chr7_1:50645917-50645936 | Msa1023290:CDS | 30.0% | |
| TTACTCCATTTGTATAGCTT+TGG | + | chr7_1:50645952-50645971 | None:intergenic | 30.0% | |
| TAATTTCCTTGACTATTGGA+TGG | + | chr7_1:50645987-50646006 | None:intergenic | 30.0% | |
| ! | GCAAATTGTTGATCTTTTGA+AGG | + | chr7_1:50646012-50646031 | None:intergenic | 30.0% |
| CTGCATCAAAATAGAGTTAT+TGG | - | chr7_1:50646064-50646083 | Msa1023290:five_prime_UTR | 30.0% | |
| ATACAATCCAGTTTACAGGA+TGG | - | chr7_1:50645349-50645368 | Msa1023290:CDS | 35.0% | |
| ! | TCATAATGGAAATCCCATCT+CGG | - | chr7_1:50645385-50645404 | Msa1023290:CDS | 35.0% |
| CAAAGCTCTTTGATAAGGAT+CGG | + | chr7_1:50645471-50645490 | None:intergenic | 35.0% | |
| ! | GTCTAAGTTCATTGATGACA+AGG | - | chr7_1:50645502-50645521 | Msa1023290:intron | 35.0% |
| TTTCTCGCGTTCTTTCTTAT+CGG | + | chr7_1:50645770-50645789 | None:intergenic | 35.0% | |
| TTGAAGGGAAAATTCTTTGG+AGG | - | chr7_1:50645835-50645854 | Msa1023290:CDS | 35.0% | |
| ! | CTGCTACTTCTTGGAATAAA+GGG | + | chr7_1:50645900-50645919 | None:intergenic | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | + | chr7_1:50645901-50645920 | None:intergenic | 35.0% |
| TAACAACCATCCAATAGTCA+AGG | - | chr7_1:50645978-50645997 | Msa1023290:CDS | 35.0% | |
| GGCATAATTTCCTTGACTAT+TGG | + | chr7_1:50645991-50646010 | None:intergenic | 35.0% | |
| ATACAATCCAGTTTACAGGA+TGG | - | chr7_1:50645349-50645368 | Msa1023290:CDS | 35.0% | |
| ! | TCATAATGGAAATCCCATCT+CGG | - | chr7_1:50645385-50645404 | Msa1023290:CDS | 35.0% |
| CAAAGCTCTTTGATAAGGAT+CGG | + | chr7_1:50645471-50645490 | None:intergenic | 35.0% | |
| ! | GTCTAAGTTCATTGATGACA+AGG | - | chr7_1:50645502-50645521 | Msa1023290:intron | 35.0% |
| TTTCTCGCGTTCTTTCTTAT+CGG | + | chr7_1:50645770-50645789 | None:intergenic | 35.0% | |
| TTGAAGGGAAAATTCTTTGG+AGG | - | chr7_1:50645835-50645854 | Msa1023290:CDS | 35.0% | |
| ! | CTGCTACTTCTTGGAATAAA+GGG | + | chr7_1:50645900-50645919 | None:intergenic | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | + | chr7_1:50645901-50645920 | None:intergenic | 35.0% |
| TAACAACCATCCAATAGTCA+AGG | - | chr7_1:50645978-50645997 | Msa1023290:CDS | 35.0% | |
| GGCATAATTTCCTTGACTAT+TGG | + | chr7_1:50645991-50646010 | None:intergenic | 35.0% | |
| TTGCAACACTCTCTTGACTT+TGG | + | chr7_1:50645171-50645190 | None:intergenic | 40.0% | |
| !! | AAAGTCAAGAGAGTGTTGCA+AGG | - | chr7_1:50645170-50645189 | Msa1023290:CDS | 40.0% |
| ! | TGAGGAAGAAGTGAAGCTTT+TGG | - | chr7_1:50645214-50645233 | Msa1023290:CDS | 40.0% |
| ! | GAGGAAGAAGTGAAGCTTTT+GGG | - | chr7_1:50645215-50645234 | Msa1023290:CDS | 40.0% |
| CATTAGAGTTCAAATTGCGC+TGG | - | chr7_1:50645259-50645278 | Msa1023290:CDS | 40.0% | |
| TCAAATTGCGCTGGAATTGA+AGG | - | chr7_1:50645268-50645287 | Msa1023290:CDS | 40.0% | |
| CAAATTGCGCTGGAATTGAA+GGG | - | chr7_1:50645269-50645288 | Msa1023290:CDS | 40.0% | |
| TAAGGATCGGAAGGCAAAAT+AGG | + | chr7_1:50645458-50645477 | None:intergenic | 40.0% | |
| CGATCCTTATCAAAGAGCTT+TGG | - | chr7_1:50645469-50645488 | Msa1023290:intron | 40.0% | |
| TTCTCGCGTTCTTTCTTATC+GGG | + | chr7_1:50645769-50645788 | None:intergenic | 40.0% | |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | - | chr7_1:50645847-50645866 | Msa1023290:CDS | 40.0% |
| ! | ACTGCAATTCTGCTACTTCT+TGG | + | chr7_1:50645909-50645928 | None:intergenic | 40.0% |
| TTGCAACACTCTCTTGACTT+TGG | + | chr7_1:50645171-50645190 | None:intergenic | 40.0% | |
| !! | AAAGTCAAGAGAGTGTTGCA+AGG | - | chr7_1:50645170-50645189 | Msa1023290:CDS | 40.0% |
| ! | TGAGGAAGAAGTGAAGCTTT+TGG | - | chr7_1:50645214-50645233 | Msa1023290:CDS | 40.0% |
| ! | GAGGAAGAAGTGAAGCTTTT+GGG | - | chr7_1:50645215-50645234 | Msa1023290:CDS | 40.0% |
| CATTAGAGTTCAAATTGCGC+TGG | - | chr7_1:50645259-50645278 | Msa1023290:CDS | 40.0% | |
| TCAAATTGCGCTGGAATTGA+AGG | - | chr7_1:50645268-50645287 | Msa1023290:CDS | 40.0% | |
| CAAATTGCGCTGGAATTGAA+GGG | - | chr7_1:50645269-50645288 | Msa1023290:CDS | 40.0% | |
| TAAGGATCGGAAGGCAAAAT+AGG | + | chr7_1:50645458-50645477 | None:intergenic | 40.0% | |
| CGATCCTTATCAAAGAGCTT+TGG | - | chr7_1:50645469-50645488 | Msa1023290:intron | 40.0% | |
| TTCTCGCGTTCTTTCTTATC+GGG | + | chr7_1:50645769-50645788 | None:intergenic | 40.0% | |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | - | chr7_1:50645847-50645866 | Msa1023290:CDS | 40.0% |
| ! | ACTGCAATTCTGCTACTTCT+TGG | + | chr7_1:50645909-50645928 | None:intergenic | 40.0% |
| !! | AAGAGAGTGTTGCAAGGCTA+TGG | - | chr7_1:50645176-50645195 | Msa1023290:CDS | 45.0% |
| !!! | AGTGAAGCTTTTGGGTTCTG+TGG | - | chr7_1:50645223-50645242 | Msa1023290:CDS | 45.0% |
| !!! | GTGAAGCTTTTGGGTTCTGT+GGG | - | chr7_1:50645224-50645243 | Msa1023290:CDS | 45.0% |
| ACAGGAACCATCCTGTAAAC+TGG | + | chr7_1:50645359-50645378 | None:intergenic | 45.0% | |
| GCTCTTTGATAAGGATCGGA+AGG | + | chr7_1:50645467-50645486 | None:intergenic | 45.0% | |
| CGAGCCAAAGCTCTTTGATA+AGG | + | chr7_1:50645476-50645495 | None:intergenic | 45.0% | |
| ! | AAAGAGCTTTGGCTCGTTTC+TGG | - | chr7_1:50645480-50645499 | Msa1023290:intron | 45.0% |
| ! | GCATTGACGCTTCAGATTGA+AGG | - | chr7_1:50645587-50645606 | Msa1023290:intron | 45.0% |
| ! | CTTCAGATTGAAGGCATGTC+TGG | - | chr7_1:50645596-50645615 | Msa1023290:intron | 45.0% |
| AGCTAGCGACGAACTATTGA+AGG | - | chr7_1:50645789-50645808 | Msa1023290:CDS | 45.0% | |
| !!! | TCTATTTTGATGCAGCAGCG+AGG | + | chr7_1:50646059-50646078 | None:intergenic | 45.0% |
| !! | AAGAGAGTGTTGCAAGGCTA+TGG | - | chr7_1:50645176-50645195 | Msa1023290:CDS | 45.0% |
| !!! | AGTGAAGCTTTTGGGTTCTG+TGG | - | chr7_1:50645223-50645242 | Msa1023290:CDS | 45.0% |
| !!! | GTGAAGCTTTTGGGTTCTGT+GGG | - | chr7_1:50645224-50645243 | Msa1023290:CDS | 45.0% |
| ACAGGAACCATCCTGTAAAC+TGG | + | chr7_1:50645359-50645378 | None:intergenic | 45.0% | |
| GCTCTTTGATAAGGATCGGA+AGG | + | chr7_1:50645467-50645486 | None:intergenic | 45.0% | |
| CGAGCCAAAGCTCTTTGATA+AGG | + | chr7_1:50645476-50645495 | None:intergenic | 45.0% | |
| ! | AAAGAGCTTTGGCTCGTTTC+TGG | - | chr7_1:50645480-50645499 | Msa1023290:intron | 45.0% |
| ! | GCATTGACGCTTCAGATTGA+AGG | - | chr7_1:50645587-50645606 | Msa1023290:intron | 45.0% |
| ! | CTTCAGATTGAAGGCATGTC+TGG | - | chr7_1:50645596-50645615 | Msa1023290:intron | 45.0% |
| AGCTAGCGACGAACTATTGA+AGG | - | chr7_1:50645789-50645808 | Msa1023290:CDS | 45.0% | |
| !!! | TCTATTTTGATGCAGCAGCG+AGG | + | chr7_1:50646059-50646078 | None:intergenic | 45.0% |
| ACAGACAAATGAGGCTGACG+CGG | - | chr7_1:50645053-50645072 | Msa1023290:three_prime_UTR | 50.0% | |
| GTTGCAAGGCTATGGTGTGA+TGG | - | chr7_1:50645184-50645203 | Msa1023290:CDS | 50.0% | |
| ATCACACGAGACTCCGAGAT+GGG | + | chr7_1:50645401-50645420 | None:intergenic | 50.0% | |
| AATCACACGAGACTCCGAGA+TGG | + | chr7_1:50645402-50645421 | None:intergenic | 50.0% | |
| ATCAGTGTGTGGCTGATGCA+TGG | - | chr7_1:50645728-50645747 | Msa1023290:CDS | 50.0% | |
| TGTGGCTGATGCATGGATGT+CGG | - | chr7_1:50645735-50645754 | Msa1023290:CDS | 50.0% | |
| ACAGACAAATGAGGCTGACG+CGG | - | chr7_1:50645053-50645072 | Msa1023290:three_prime_UTR | 50.0% | |
| GTTGCAAGGCTATGGTGTGA+TGG | - | chr7_1:50645184-50645203 | Msa1023290:CDS | 50.0% | |
| ATCACACGAGACTCCGAGAT+GGG | + | chr7_1:50645401-50645420 | None:intergenic | 50.0% | |
| AATCACACGAGACTCCGAGA+TGG | + | chr7_1:50645402-50645421 | None:intergenic | 50.0% | |
| ATCAGTGTGTGGCTGATGCA+TGG | - | chr7_1:50645728-50645747 | Msa1023290:CDS | 50.0% | |
| TGTGGCTGATGCATGGATGT+CGG | - | chr7_1:50645735-50645754 | Msa1023290:CDS | 50.0% | |
| TGGTGTGATGGCTGCATCTG+AGG | - | chr7_1:50645196-50645215 | Msa1023290:CDS | 55.0% | |
| TGGTGTGATGGCTGCATCTG+AGG | - | chr7_1:50645196-50645215 | Msa1023290:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 50644979 | 50646197 | 50644979 | ID=Msa1023290;Name=Msa1023290 |
| chr7_1 | mRNA | 50644979 | 50646197 | 50644979 | ID=Msa1023290-mRNA-1;Parent=Msa1023290;Name=Msa1023290-mRNA-1;_AED=0.39;_eAED=0.39;_QI=170|1|1|1|1|1|2|120|239 |
| chr7_1 | exon | 50644979 | 50645443 | 50644979 | ID=Msa1023290-mRNA-1:exon:9951;Parent=Msa1023290-mRNA-1 |
| chr7_1 | exon | 50645653 | 50646197 | 50645653 | ID=Msa1023290-mRNA-1:exon:9950;Parent=Msa1023290-mRNA-1 |
| chr7_1 | five_prime_UTR | 50646028 | 50646197 | 50646028 | ID=Msa1023290-mRNA-1:five_prime_utr;Parent=Msa1023290-mRNA-1 |
| chr7_1 | CDS | 50645653 | 50646027 | 50645653 | ID=Msa1023290-mRNA-1:cds;Parent=Msa1023290-mRNA-1 |
| chr7_1 | CDS | 50645099 | 50645443 | 50645099 | ID=Msa1023290-mRNA-1:cds;Parent=Msa1023290-mRNA-1 |
| chr7_1 | three_prime_UTR | 50644979 | 50645098 | 50644979 | ID=Msa1023290-mRNA-1:three_prime_utr;Parent=Msa1023290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
