Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062120 | GAU21835.1 | 82.209 | 163 | 29 | 0 | 5 | 167 | 1 | 163 | 3.13e-89 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062120 | A0A2Z6MFU8 | 82.209 | 163 | 29 | 0 | 5 | 167 | 1 | 163 | 1.49e-89 | 268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035340 | Msa1062120 | 0.802192 | 6.304846e-49 | -8.615850e-47 |
| Msa1042160 | Msa1062120 | 0.803750 | 3.003521e-49 | -8.615850e-47 |
| Msa1044680 | Msa1062120 | 0.803146 | 4.006476e-49 | -8.615850e-47 |
| Msa1062120 | Msa1062230 | 0.940828 | 1.194102e-100 | -8.615850e-47 |
| Msa1062120 | Msa1105640 | 0.808529 | 2.961658e-50 | -8.615850e-47 |
| Msa1062120 | Msa1105780 | 0.901552 | 2.388091e-78 | -8.615850e-47 |
| Msa0270340 | Msa1062120 | 0.809207 | 2.121032e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062120 | MtrunA17_Chr7g0237941 | 91.837 | 147 | 12 | 0 | 1 | 147 | 1 | 147 | 1.78e-89 | 258 |
| Msa1062120 | MtrunA17_Chr4g0010041 | 61.850 | 173 | 59 | 4 | 1 | 167 | 1 | 172 | 2.69e-57 | 178 |
| Msa1062120 | MtrunA17_Chr2g0328051 | 47.297 | 148 | 69 | 3 | 1 | 141 | 1 | 146 | 6.53e-21 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062120 | AT5G02440.1 | 46.821 | 173 | 65 | 5 | 1 | 146 | 1 | 173 | 4.86e-28 | 103 |
Find 49 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTAGCACTTTGCTTTC+TGG | 0.087700 | 7_2:-52694906 | Msa1062120:CDS |
| TAGGATCATAGATGCGTTTC+AGG | 0.207632 | 7_2:-52692283 | Msa1062120:three_prime_UTR |
| CCTACAAGTTATAGACAAAA+TGG | 0.272947 | 7_2:-52692587 | Msa1062120:CDS |
| CAAATTCTCTGCTTCAATCT+TGG | 0.286516 | 7_2:+52692522 | None:intergenic |
| GCTTCGGCTTGTGATTCTTT+TGG | 0.324268 | 7_2:+52692735 | None:intergenic |
| TTGATCTCCTTGAGAGTTGT+AGG | 0.333801 | 7_2:+52692792 | None:intergenic |
| CAGGAAGAAGGGTGGCCATT+TGG | 0.342238 | 7_2:-52694990 | Msa1062120:CDS |
| GAAACCTTAAAACCATGTTT+AGG | 0.360030 | 7_2:-52692302 | Msa1062120:three_prime_UTR |
| GACTCAACCTCACACTTTGT+TGG | 0.365247 | 7_2:-52692548 | Msa1062120:CDS |
| AGTATATTTCATTTAGATCA+TGG | 0.406251 | 7_2:-52692429 | Msa1062120:three_prime_UTR |
| AAAGACAGTAATGGCTCATC+AGG | 0.408739 | 7_2:-52695254 | Msa1062120:intron |
| GATTATTGAATTCTAGAGTT+GGG | 0.422488 | 7_2:-52694962 | Msa1062120:CDS |
| ATAGTATCAACTTTGATTCA+AGG | 0.423405 | 7_2:+52695323 | None:intergenic |
| TGTGAGGTTGAGTCTTGAAT+AGG | 0.433184 | 7_2:+52692557 | None:intergenic |
| TGGGGTGGATTTCAGGAAGA+AGG | 0.445940 | 7_2:-52695002 | Msa1062120:intron |
| CTCAATTATTATTGCAGTCG+TGG | 0.454755 | 7_2:-52692404 | Msa1062120:three_prime_UTR |
| TTCAATAATCTCAATCCAAA+TGG | 0.457501 | 7_2:+52694975 | None:intergenic |
| TCTGATGAAGAATAAGTTGA+AGG | 0.462420 | 7_2:+52694873 | None:intergenic |
| CTTAATACTGATGCGGTGAA+TGG | 0.470568 | 7_2:-52692686 | Msa1062120:CDS |
| AGATTATTGAATTCTAGAGT+TGG | 0.478548 | 7_2:-52694963 | Msa1062120:CDS |
| GGTAATGATGCTCATTCTCT+TGG | 0.479818 | 7_2:-52692665 | Msa1062120:CDS |
| AGTGAAAACAACCAAGGCTT+CGG | 0.483004 | 7_2:+52692719 | None:intergenic |
| GGGGTGGATTTCAGGAAGAA+GGG | 0.492395 | 7_2:-52695001 | Msa1062120:intron |
| ATTGAATTCTAGAGTTGGGC+TGG | 0.499054 | 7_2:-52694958 | Msa1062120:CDS |
| TTCATCAGATCTTGACACTC+AGG | 0.504319 | 7_2:-52694859 | Msa1062120:intron |
| TTGTGGTTATGATGCCCGTC+TGG | 0.518049 | 7_2:-52692324 | Msa1062120:three_prime_UTR |
| AGAATCACAAGCCGAAGCCT+TGG | 0.520418 | 7_2:-52692730 | Msa1062120:CDS |
| CATGGGTTTGTACAGTCCAC+TGG | 0.521508 | 7_2:-52692872 | Msa1062120:intron |
| GCAGAGAATTTGAACACGAA+TGG | 0.526620 | 7_2:-52692511 | Msa1062120:three_prime_UTR |
| TTGTTCAGAAAAGACAGTAA+TGG | 0.542795 | 7_2:-52695263 | Msa1062120:exon |
| CGCATCTATGATCCTAAACA+TGG | 0.544221 | 7_2:+52692290 | None:intergenic |
| ATCAAGCAGAGGAAGAGTGA+TGG | 0.548599 | 7_2:-52692774 | Msa1062120:CDS |
| AGAGTTGGGCTGGTGAGAAA+TGG | 0.552892 | 7_2:-52694948 | Msa1062120:CDS |
| CATTTAACATATAGATGCAA+TGG | 0.564660 | 7_2:+52695444 | None:intergenic |
| AAGAGTGATGGATTCATCAA+AGG | 0.581601 | 7_2:-52692762 | Msa1062120:CDS |
| CAAGCTTCCTACAACTCTCA+AGG | 0.593246 | 7_2:-52692799 | Msa1062120:CDS |
| GGAAGCTTGAAGCTCGAATG+AGG | 0.602326 | 7_2:+52692813 | None:intergenic |
| TATACTAAAATGAGTAACGA+TGG | 0.602491 | 7_2:+52692446 | None:intergenic |
| CATGACAAGAGCATTACACT+AGG | 0.621795 | 7_2:-52692839 | Msa1062120:CDS |
| CTAGTGTAATGCTCTTGTCA+TGG | 0.631907 | 7_2:+52692840 | None:intergenic |
| TTGGCTTCCAACAAAGTGTG+AGG | 0.644693 | 7_2:+52692541 | None:intergenic |
| TGAAGAATAAGTTGAAGGTG+TGG | 0.652313 | 7_2:+52694878 | None:intergenic |
| GAAGAATAAGTTGAAGGTGT+GGG | 0.654137 | 7_2:+52694879 | None:intergenic |
| TTGTAAGCTTAATACTGATG+CGG | 0.657861 | 7_2:-52692693 | Msa1062120:CDS |
| GTGGATTTCAGGAAGAAGGG+TGG | 0.664696 | 7_2:-52694998 | Msa1062120:intron |
| CTCTCAAGGAGATCAAGCAG+AGG | 0.673615 | 7_2:-52692785 | Msa1062120:CDS |
| CAACAAAGTGAAAACAACCA+AGG | 0.675097 | 7_2:+52692713 | None:intergenic |
| GTCATGGAAGAATGATCCAG+TGG | 0.680673 | 7_2:+52692856 | None:intergenic |
| GGCCGATGCGATCAAAATTG+TGG | 0.688826 | 7_2:-52692341 | Msa1062120:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAATTTGAAAGAAT+CGG | - | chr7_2:52693075-52693094 | Msa1062120:intron | 10.0% |
| !!! | ATACTTTTTTTCTATTTTTT+TGG | - | chr7_2:52693475-52693494 | Msa1062120:intron | 10.0% |
| !!! | TACTTTTTTTCTATTTTTTT+GGG | - | chr7_2:52693476-52693495 | Msa1062120:intron | 10.0% |
| !!! | AAAAAACAACACTTTAAAAA+AGG | + | chr7_2:52692340-52692359 | None:intergenic | 15.0% |
| !!! | TTTTTAAAGTGTTGTTTTTT+TGG | - | chr7_2:52692340-52692359 | Msa1062120:three_prime_UTR | 15.0% |
| !!! | TTTTTATTTTGTTTGCATTT+TGG | - | chr7_2:52692702-52692721 | Msa1062120:CDS | 15.0% |
| !!! | TCTTTCAAATTTTTAAAACA+TGG | + | chr7_2:52693073-52693092 | None:intergenic | 15.0% |
| !! | TTAAAAAGTAGTAAAAGAAT+CGG | + | chr7_2:52693136-52693155 | None:intergenic | 15.0% |
| !!! | ATTCTTTTACTACTTTTTAA+CGG | - | chr7_2:52693136-52693155 | Msa1062120:intron | 15.0% |
| !!! | TCTTTTATAGTACAAAATAA+TGG | - | chr7_2:52693684-52693703 | Msa1062120:intron | 15.0% |
| !! | AAGAAAAAAAACATTCTTAA+TGG | - | chr7_2:52694250-52694269 | Msa1062120:intron | 15.0% |
| !! | AAATGAAAATCTTACTTTAA+AGG | - | chr7_2:52694432-52694451 | Msa1062120:intron | 15.0% |
| !!! | TTTTGATTGAATCATTTTGA+GGG | - | chr7_2:52692636-52692655 | Msa1062120:CDS | 20.0% |
| !! | AAACACTAGCATTAAAAATA+TGG | + | chr7_2:52692979-52692998 | None:intergenic | 20.0% |
| !!! | CTTTGAAAATTTGAAAGAAT+CGG | - | chr7_2:52693359-52693378 | Msa1062120:intron | 20.0% |
| !! | GAATAAATACCAAATCTTTA+TGG | + | chr7_2:52693989-52694008 | None:intergenic | 20.0% |
| !!! | TTTTAGTTGATTCTCTTATT+TGG | - | chr7_2:52694020-52694039 | Msa1062120:intron | 20.0% |
| !!! | ATTGTTTTTTTGTTAGCATA+TGG | - | chr7_2:52694156-52694175 | Msa1062120:intron | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | + | chr7_2:52694670-52694689 | None:intergenic | 20.0% |
| !! | AGTATATTTCATTTAGATCA+TGG | - | chr7_2:52695306-52695325 | Msa1062120:five_prime_UTR | 20.0% |
| ! | CATTTAACATATAGATGCAA+TGG | + | chr7_2:52692294-52692313 | None:intergenic | 25.0% |
| ! | ATAGTATCAACTTTGATTCA+AGG | + | chr7_2:52692415-52692434 | None:intergenic | 25.0% |
| !!! | CTTTTGATTGAATCATTTTG+AGG | - | chr7_2:52692635-52692654 | Msa1062120:CDS | 25.0% |
| !!! | TTATTTTGTTTGCATTTTGG+TGG | - | chr7_2:52692705-52692724 | Msa1062120:CDS | 25.0% |
| !!! | TATTTTGTTTGCATTTTGGT+GGG | - | chr7_2:52692706-52692725 | Msa1062120:CDS | 25.0% |
| ! | TTCAATAATCTCAATCCAAA+TGG | + | chr7_2:52692763-52692782 | None:intergenic | 25.0% |
| !!! | AGATTATTGAATTCTAGAGT+TGG | - | chr7_2:52692772-52692791 | Msa1062120:CDS | 25.0% |
| !!! | GATTATTGAATTCTAGAGTT+GGG | - | chr7_2:52692773-52692792 | Msa1062120:CDS | 25.0% |
| ! | ACAGTTACAAGAAAACAAAA+AGG | + | chr7_2:52693006-52693025 | None:intergenic | 25.0% |
| ! | AAATGATCAAGTTACAAGTA+AGG | + | chr7_2:52693299-52693318 | None:intergenic | 25.0% |
| !!! | TTAGTAAGATTTTCAAGTCA+TGG | + | chr7_2:52693535-52693554 | None:intergenic | 25.0% |
| ! | ATAGGATCAATAACCAAAAA+GGG | + | chr7_2:52693763-52693782 | None:intergenic | 25.0% |
| ! | AATAGGATCAATAACCAAAA+AGG | + | chr7_2:52693764-52693783 | None:intergenic | 25.0% |
| !! | AAGACTTTAACTTTCAACAA+AGG | + | chr7_2:52694217-52694236 | None:intergenic | 25.0% |
| ! | TTAAAGTCTTCTATGATGTT+TGG | - | chr7_2:52694227-52694246 | Msa1062120:intron | 25.0% |
| ! | TGTTACTAAAGAAACATCAA+AGG | + | chr7_2:52694367-52694386 | None:intergenic | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | - | chr7_2:52694701-52694720 | Msa1062120:intron | 25.0% |
| ! | TATACTAAAATGAGTAACGA+TGG | + | chr7_2:52695292-52695311 | None:intergenic | 25.0% |
| !! | CACATTTTTCTACAATGTAA+AGG | + | chr7_2:52695375-52695394 | None:intergenic | 25.0% |
| ! | CTTTACATTGTAGAAAAATG+TGG | - | chr7_2:52695373-52695392 | Msa1062120:five_prime_UTR | 25.0% |
| !!! | GTGTTGTTTTTTTGGTTAGA+AGG | - | chr7_2:52692348-52692367 | Msa1062120:three_prime_UTR | 30.0% |
| ! | ACTGTCTTTTCTGAACAAAA+TGG | + | chr7_2:52692470-52692489 | None:intergenic | 30.0% |
| TTGTTCAGAAAAGACAGTAA+TGG | - | chr7_2:52692472-52692491 | Msa1062120:three_prime_UTR | 30.0% | |
| TCAGCATATTTATGAGACTA+TGG | - | chr7_2:52692670-52692689 | Msa1062120:CDS | 30.0% | |
| !! | ATTTTGTTTGCATTTTGGTG+GGG | - | chr7_2:52692707-52692726 | Msa1062120:CDS | 30.0% |
| ! | TCTGATGAAGAATAAGTTGA+AGG | + | chr7_2:52692865-52692884 | None:intergenic | 30.0% |
| ATGGTATCAAACAAACAAAG+TGG | + | chr7_2:52692960-52692979 | None:intergenic | 30.0% | |
| ! | CTTTTTAACGGTGATTGAAT+CGG | - | chr7_2:52693148-52693167 | Msa1062120:intron | 30.0% |
| AACCTAAACAATCATTGAGT+TGG | + | chr7_2:52693198-52693217 | None:intergenic | 30.0% | |
| TTGGTATCAAACAAACAAAG+TGG | + | chr7_2:52693245-52693264 | None:intergenic | 30.0% | |
| TTGATACCAAATTGCCATTA+TGG | - | chr7_2:52693255-52693274 | Msa1062120:intron | 30.0% | |
| AGTTTCTTCAAACACCATAA+TGG | + | chr7_2:52693272-52693291 | None:intergenic | 30.0% | |
| GTATTGTAGTCTGATTGAAT+CGG | - | chr7_2:52693440-52693459 | Msa1062120:intron | 30.0% | |
| TATTGTAGTCTGATTGAATC+GGG | - | chr7_2:52693441-52693460 | Msa1062120:intron | 30.0% | |
| ACTGCAATGATTTGAAAATC+TGG | + | chr7_2:52693570-52693589 | None:intergenic | 30.0% | |
| TGATGACACTATTTCAGTTA+TGG | - | chr7_2:52693589-52693608 | Msa1062120:intron | 30.0% | |
| ! | ACACAATGATATACCCTTTT+TGG | - | chr7_2:52693747-52693766 | Msa1062120:intron | 30.0% |
| TACTCTTTATTACTTTCACC+TGG | - | chr7_2:52693823-52693842 | Msa1062120:intron | 30.0% | |
| AACCAAAGTACATAGTCAAA+AGG | + | chr7_2:52693867-52693886 | None:intergenic | 30.0% | |
| TCATAATTTCTCTGATGAAG+AGG | - | chr7_2:52693887-52693906 | Msa1062120:intron | 30.0% | |
| TCCAAAATCCAACATTGAAT+AGG | - | chr7_2:52693935-52693954 | Msa1062120:intron | 30.0% | |
| ! | TCCTATTCAATGTTGGATTT+TGG | + | chr7_2:52693939-52693958 | None:intergenic | 30.0% |
| ATCCAACATTGAATAGGAAA+AGG | - | chr7_2:52693941-52693960 | Msa1062120:intron | 30.0% | |
| ! | TTCCTTTTCCTATTCAATGT+TGG | + | chr7_2:52693946-52693965 | None:intergenic | 30.0% |
| TGAACATGTCCATAAAGATT+TGG | - | chr7_2:52693977-52693996 | Msa1062120:intron | 30.0% | |
| ATCAACTAAAAGAAAACGAC+AGG | + | chr7_2:52694011-52694030 | None:intergenic | 30.0% | |
| CTAGTACATACATAATTGCT+TGG | - | chr7_2:52694062-52694081 | Msa1062120:intron | 30.0% | |
| ! | TTACTTTAAAGGCTGAAGTA+AGG | - | chr7_2:52694443-52694462 | Msa1062120:intron | 30.0% |
| TTTGTTAACCCATCATGATT+TGG | - | chr7_2:52694591-52694610 | Msa1062120:intron | 30.0% | |
| AGTATTCATGCTTCATAGTT+TGG | - | chr7_2:52694782-52694801 | Msa1062120:intron | 30.0% | |
| TTGTAAGCTTAATACTGATG+CGG | - | chr7_2:52695042-52695061 | Msa1062120:intron | 30.0% | |
| !! | CCATTTTGTCTATAACTTGT+AGG | + | chr7_2:52695151-52695170 | None:intergenic | 30.0% |
| CCTACAAGTTATAGACAAAA+TGG | - | chr7_2:52695148-52695167 | Msa1062120:intron | 30.0% | |
| GAAACCTTAAAACCATGTTT+AGG | - | chr7_2:52695433-52695452 | Msa1062120:five_prime_UTR | 30.0% | |
| !! | TGATCCTAAACATGGTTTTA+AGG | + | chr7_2:52695440-52695459 | None:intergenic | 30.0% |
| ! | GTGAGAAATGGTGATTTTTC+AGG | - | chr7_2:52692799-52692818 | Msa1062120:CDS | 35.0% |
| !!! | AATGGTGATTTTTCAGGTTC+AGG | - | chr7_2:52692805-52692824 | Msa1062120:CDS | 35.0% |
| TCATTTAGCACTTTGCTTTC+TGG | - | chr7_2:52692829-52692848 | Msa1062120:CDS | 35.0% | |
| ! | GAAGAATAAGTTGAAGGTGT+GGG | + | chr7_2:52692859-52692878 | None:intergenic | 35.0% |
| ! | TGAAGAATAAGTTGAAGGTG+TGG | + | chr7_2:52692860-52692879 | None:intergenic | 35.0% |
| ! | AATCGGTTCAATCGATTGAA+AGG | - | chr7_2:52693092-52693111 | Msa1062120:intron | 35.0% |
| ! | ATCGGTTCAATCGATTGAAA+GGG | - | chr7_2:52693093-52693112 | Msa1062120:intron | 35.0% |
| !!! | TTGGTGAGATTTTCAAGTCA+TGG | + | chr7_2:52693179-52693198 | None:intergenic | 35.0% |
| CACCAACTCAATGATTGTTT+AGG | - | chr7_2:52693193-52693212 | Msa1062120:intron | 35.0% | |
| CAAACACCATAATGGCAATT+TGG | + | chr7_2:52693264-52693283 | None:intergenic | 35.0% | |
| ! | AAAGAATCGGCTAGTTCAAT+CGG | - | chr7_2:52693372-52693391 | Msa1062120:intron | 35.0% |
| ATCAAACCAATCGGTAAAGT+GGG | + | chr7_2:52693413-52693432 | None:intergenic | 35.0% | |
| AATCAAACCAATCGGTAAAG+TGG | + | chr7_2:52693414-52693433 | None:intergenic | 35.0% | |
| !! | TTTACCGATTGGTTTGATTC+TGG | - | chr7_2:52693415-52693434 | Msa1062120:intron | 35.0% |
| ACAACCAGAATCAAACCAAT+CGG | + | chr7_2:52693422-52693441 | None:intergenic | 35.0% | |
| !!! | TTTTCAAGTCATGGTTCAAC+TGG | + | chr7_2:52693170-52693189 | None:intergenic | 35.0% |
| ! | TATTACTTTCACCTGGTTTG+TGG | - | chr7_2:52693830-52693849 | Msa1062120:intron | 35.0% |
| AAGTACATAGTCAAAAGGCA+TGG | + | chr7_2:52693862-52693881 | None:intergenic | 35.0% | |
| !! | TGCCTTTTGACTATGTACTT+TGG | - | chr7_2:52693862-52693881 | Msa1062120:intron | 35.0% |
| TTAGATAACAACCCTTGAGA+AGG | - | chr7_2:52694274-52694293 | Msa1062120:intron | 35.0% | |
| TAGATAACAACCCTTGAGAA+GGG | - | chr7_2:52694275-52694294 | Msa1062120:intron | 35.0% | |
| TTCTTTCTTACCCTTCTCAA+GGG | + | chr7_2:52694288-52694307 | None:intergenic | 35.0% | |
| TGTCAATCTAAACATGCACT+CGG | + | chr7_2:52694541-52694560 | None:intergenic | 35.0% | |
| GTTTAGATTGACAGTGTACT+TGG | - | chr7_2:52694548-52694567 | Msa1062120:intron | 35.0% | |
| GTTTCGTACCAAATCATGAT+GGG | + | chr7_2:52694602-52694621 | None:intergenic | 35.0% | |
| TGTTTCGTACCAAATCATGA+TGG | + | chr7_2:52694603-52694622 | None:intergenic | 35.0% | |
| !! | TCATGATTTGGTACGAAACA+CGG | - | chr7_2:52694603-52694622 | Msa1062120:intron | 35.0% |
| TATGAAGCATGAATACTCCT+CGG | + | chr7_2:52694779-52694798 | None:intergenic | 35.0% | |
| TTGCCTTAACTCACTTAACA+TGG | - | chr7_2:52694845-52694864 | Msa1062120:intron | 35.0% | |
| TGCCTTAACTCACTTAACAT+GGG | - | chr7_2:52694846-52694865 | Msa1062120:intron | 35.0% | |
| AACCCATGTTAAGTGAGTTA+AGG | + | chr7_2:52694851-52694870 | None:intergenic | 35.0% | |
| !! | AAGAGTGATGGATTCATCAA+AGG | - | chr7_2:52694973-52694992 | Msa1062120:CDS | 35.0% |
| CAACAAAGTGAAAACAACCA+AGG | + | chr7_2:52695025-52695044 | None:intergenic | 35.0% | |
| CAAATTCTCTGCTTCAATCT+TGG | + | chr7_2:52695216-52695235 | None:intergenic | 35.0% | |
| ! | ATGGTTTTCTCTAGTTAGTG+TGG | - | chr7_2:52695243-52695262 | Msa1062120:intron | 35.0% |
| CTCAATTATTATTGCAGTCG+TGG | - | chr7_2:52695331-52695350 | Msa1062120:five_prime_UTR | 35.0% | |
| !! | AACCACAATTTTGATCGCAT+CGG | + | chr7_2:52695399-52695418 | None:intergenic | 35.0% |
| !!! | ATGGTTTTAAGGTTTCCAGA+CGG | + | chr7_2:52695429-52695448 | None:intergenic | 35.0% |
| AAAGACAGTAATGGCTCATC+AGG | - | chr7_2:52692481-52692500 | Msa1062120:three_prime_UTR | 40.0% | |
| !! | TTTGCATTTTGGTGGGGTTT+TGG | - | chr7_2:52692713-52692732 | Msa1062120:CDS | 40.0% |
| !! | TTGCATTTTGGTGGGGTTTT+GGG | - | chr7_2:52692714-52692733 | Msa1062120:CDS | 40.0% |
| !! | ATTGAATTCTAGAGTTGGGC+TGG | - | chr7_2:52692777-52692796 | Msa1062120:CDS | 40.0% |
| TTCATCAGATCTTGACACTC+AGG | - | chr7_2:52692876-52692895 | Msa1062120:intron | 40.0% | |
| TCGGTTCAATCGATTGAAAG+GGG | - | chr7_2:52693094-52693113 | Msa1062120:intron | 40.0% | |
| CAATCGATTGAAAGGGGAAT+CGG | - | chr7_2:52693100-52693119 | Msa1062120:intron | 40.0% | |
| GCTAGTTCAATCGGTTGAAA+GGG | - | chr7_2:52693381-52693400 | Msa1062120:intron | 40.0% | |
| CTAGTTCAATCGGTTGAAAG+GGG | - | chr7_2:52693382-52693401 | Msa1062120:intron | 40.0% | |
| TGGTTCAGTCAAGGTTGTAT+CGG | + | chr7_2:52693506-52693525 | None:intergenic | 40.0% | |
| CATGGTTATAACCACAAACC+AGG | + | chr7_2:52693844-52693863 | None:intergenic | 40.0% | |
| ! | GGATTTTGGACTCATTCTCA+AGG | + | chr7_2:52693925-52693944 | None:intergenic | 40.0% |
| ACATAATTGCTTGGCTCCTA+TGG | - | chr7_2:52694071-52694090 | Msa1062120:intron | 40.0% | |
| CATAATTGCTTGGCTCCTAT+GGG | - | chr7_2:52694072-52694091 | Msa1062120:intron | 40.0% | |
| ATAATTGCTTGGCTCCTATG+GGG | - | chr7_2:52694073-52694092 | Msa1062120:intron | 40.0% | |
| !! | TGGACTAGCACATCATTGTT+TGG | - | chr7_2:52694105-52694124 | Msa1062120:intron | 40.0% |
| CTTCTTTCTTACCCTTCTCA+AGG | + | chr7_2:52694289-52694308 | None:intergenic | 40.0% | |
| TTTGGTACGAAACACGGATA+CGG | - | chr7_2:52694609-52694628 | Msa1062120:intron | 40.0% | |
| CTAGTGTAATGCTCTTGTCA+TGG | + | chr7_2:52694898-52694917 | None:intergenic | 40.0% | |
| !! | CATGACAAGAGCATTACACT+AGG | - | chr7_2:52694896-52694915 | Msa1062120:CDS | 40.0% |
| TTGATCTCCTTGAGAGTTGT+AGG | + | chr7_2:52694946-52694965 | None:intergenic | 40.0% | |
| AGTGAAAACAACCAAGGCTT+CGG | + | chr7_2:52695019-52695038 | None:intergenic | 40.0% | |
| CTTAATACTGATGCGGTGAA+TGG | - | chr7_2:52695049-52695068 | Msa1062120:intron | 40.0% | |
| GGTAATGATGCTCATTCTCT+TGG | - | chr7_2:52695070-52695089 | Msa1062120:intron | 40.0% | |
| TGTGAGGTTGAGTCTTGAAT+AGG | + | chr7_2:52695181-52695200 | None:intergenic | 40.0% | |
| GCAGAGAATTTGAACACGAA+TGG | - | chr7_2:52695224-52695243 | Msa1062120:intron | 40.0% | |
| !!! | TGGTTTTAAGGTTTCCAGAC+GGG | + | chr7_2:52695428-52695447 | None:intergenic | 40.0% |
| CGCATCTATGATCCTAAACA+TGG | + | chr7_2:52695448-52695467 | None:intergenic | 40.0% | |
| TAGGATCATAGATGCGTTTC+AGG | - | chr7_2:52695452-52695471 | Msa1062120:five_prime_UTR | 40.0% | |
| TCTCTAGCACAGACACAATG+TGG | - | chr7_2:52692559-52692578 | Msa1062120:CDS | 45.0% | |
| !! | TGCATTTTGGTGGGGTTTTG+GGG | - | chr7_2:52692715-52692734 | Msa1062120:CDS | 45.0% |
| GATTGAAAGGGGAATCGGAT+TGG | - | chr7_2:52693105-52693124 | Msa1062120:intron | 45.0% | |
| ! | GGCTAGTTCAATCGGTTGAA+AGG | - | chr7_2:52693380-52693399 | Msa1062120:intron | 45.0% |
| GAATGACCCACTTTACCGAT+TGG | - | chr7_2:52693404-52693423 | Msa1062120:intron | 45.0% | |
| ! | TGGTTCAACTGGTTCAGTCA+AGG | + | chr7_2:52693515-52693534 | None:intergenic | 45.0% |
| ATACATGCTCACTGCTCAGT+AGG | + | chr7_2:52693787-52693806 | None:intergenic | 45.0% | |
| TGATGTGCTAGTCCATGCTT+TGG | + | chr7_2:52694100-52694119 | None:intergenic | 45.0% | |
| TGTACTTGGCGAAATCACGA+TGG | - | chr7_2:52694562-52694581 | Msa1062120:intron | 45.0% | |
| !! | TACAAGTGTCGGTGTTGTGT+CGG | - | chr7_2:52694712-52694731 | Msa1062120:intron | 45.0% |
| GCATGAATACTCCTCGGATT+AGG | + | chr7_2:52694773-52694792 | None:intergenic | 45.0% | |
| GTCATGGAAGAATGATCCAG+TGG | + | chr7_2:52694882-52694901 | None:intergenic | 45.0% | |
| CAAGCTTCCTACAACTCTCA+AGG | - | chr7_2:52694936-52694955 | Msa1062120:CDS | 45.0% | |
| ATCAAGCAGAGGAAGAGTGA+TGG | - | chr7_2:52694961-52694980 | Msa1062120:CDS | 45.0% | |
| !! | GCTTCGGCTTGTGATTCTTT+TGG | + | chr7_2:52695003-52695022 | None:intergenic | 45.0% |
| GACTCAACCTCACACTTTGT+TGG | - | chr7_2:52695187-52695206 | Msa1062120:intron | 45.0% | |
| TTGGCTTCCAACAAAGTGTG+AGG | + | chr7_2:52695197-52695216 | None:intergenic | 45.0% | |
| !!! | ATTTTGGTGGGGTTTTGGGG+TGG | - | chr7_2:52692718-52692737 | Msa1062120:CDS | 50.0% |
| ! | TGGGGTGGATTTCAGGAAGA+AGG | - | chr7_2:52692733-52692752 | Msa1062120:CDS | 50.0% |
| ! | GGGGTGGATTTCAGGAAGAA+GGG | - | chr7_2:52692734-52692753 | Msa1062120:CDS | 50.0% |
| GTGGATTTCAGGAAGAAGGG+TGG | - | chr7_2:52692737-52692756 | Msa1062120:CDS | 50.0% | |
| !! | AGAGTTGGGCTGGTGAGAAA+TGG | - | chr7_2:52692787-52692806 | Msa1062120:CDS | 50.0% |
| GCTCACTGCTCAGTAGGAAT+AGG | + | chr7_2:52693781-52693800 | None:intergenic | 50.0% | |
| AACACGGATACGGACACGTA+CGG | - | chr7_2:52694619-52694638 | Msa1062120:intron | 50.0% | |
| CACGTACGGTGGATACAACA+CGG | - | chr7_2:52694633-52694652 | Msa1062120:intron | 50.0% | |
| ACACGACACGTCTATGACAC+CGG | - | chr7_2:52694741-52694760 | Msa1062120:intron | 50.0% | |
| CATGGGTTTGTACAGTCCAC+TGG | - | chr7_2:52694863-52694882 | Msa1062120:CDS | 50.0% | |
| GGAAGCTTGAAGCTCGAATG+AGG | + | chr7_2:52694925-52694944 | None:intergenic | 50.0% | |
| CTCTCAAGGAGATCAAGCAG+AGG | - | chr7_2:52694950-52694969 | Msa1062120:CDS | 50.0% | |
| AGAATCACAAGCCGAAGCCT+TGG | - | chr7_2:52695005-52695024 | Msa1062120:intron | 50.0% | |
| GGCCGATGCGATCAAAATTG+TGG | - | chr7_2:52695394-52695413 | Msa1062120:five_prime_UTR | 50.0% | |
| TTGTGGTTATGATGCCCGTC+TGG | - | chr7_2:52695411-52695430 | Msa1062120:five_prime_UTR | 50.0% | |
| !!! | GGGGTTTTGGGGTGGATTTC+AGG | - | chr7_2:52692726-52692745 | Msa1062120:CDS | 55.0% |
| CAGGAAGAAGGGTGGCCATT+TGG | - | chr7_2:52692745-52692764 | Msa1062120:CDS | 55.0% | |
| CTCCTATGGGGTCCAAAGCA+TGG | - | chr7_2:52694085-52694104 | Msa1062120:intron | 55.0% | |
| ! | GTCCATGCTTTGGACCCCAT+AGG | + | chr7_2:52694090-52694109 | None:intergenic | 55.0% |
| !! | TGTCGGTGTTGTGTCGGTGT+CGG | - | chr7_2:52694718-52694737 | Msa1062120:intron | 55.0% |
| CACGACACGTCTATGACACC+GGG | - | chr7_2:52694742-52694761 | Msa1062120:intron | 55.0% | |
| ACGGATACGGACACGTACGG+TGG | - | chr7_2:52694622-52694641 | Msa1062120:intron | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr7_2:52694763-52694782 | None:intergenic | 60.0% |
| ACCGGGACACGCCTAATCCG+AGG | - | chr7_2:52694759-52694778 | Msa1062120:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 52692271 | 52695486 | 52692271 | ID=Msa1062120;Name=Msa1062120 |
| chr7_2 | mRNA | 52692271 | 52695486 | 52692271 | ID=Msa1062120-mRNA-1;Parent=Msa1062120;Name=Msa1062120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=220|1|1|1|1|1|3|264|168 |
| chr7_2 | exon | 52692271 | 52692879 | 52692271 | ID=Msa1062120-mRNA-1:exon:9529;Parent=Msa1062120-mRNA-1 |
| chr7_2 | exon | 52694860 | 52695009 | 52694860 | ID=Msa1062120-mRNA-1:exon:9528;Parent=Msa1062120-mRNA-1 |
| chr7_2 | exon | 52695255 | 52695486 | 52695255 | ID=Msa1062120-mRNA-1:exon:9527;Parent=Msa1062120-mRNA-1 |
| chr7_2 | five_prime_UTR | 52695267 | 52695486 | 52695267 | ID=Msa1062120-mRNA-1:five_prime_utr;Parent=Msa1062120-mRNA-1 |
| chr7_2 | CDS | 52695255 | 52695266 | 52695255 | ID=Msa1062120-mRNA-1:cds;Parent=Msa1062120-mRNA-1 |
| chr7_2 | CDS | 52694860 | 52695009 | 52694860 | ID=Msa1062120-mRNA-1:cds;Parent=Msa1062120-mRNA-1 |
| chr7_2 | CDS | 52692535 | 52692879 | 52692535 | ID=Msa1062120-mRNA-1:cds;Parent=Msa1062120-mRNA-1 |
| chr7_2 | three_prime_UTR | 52692271 | 52692534 | 52692271 | ID=Msa1062120-mRNA-1:three_prime_utr;Parent=Msa1062120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
