Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062230 | GAU21835.1 | 81.595 | 163 | 30 | 0 | 5 | 167 | 1 | 163 | 1.73e-88 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062230 | A0A2Z6MFU8 | 81.595 | 163 | 30 | 0 | 5 | 167 | 1 | 163 | 8.26e-89 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0700460 | Msa1062230 | 0.805009 | 1.641952e-49 | -8.615850e-47 |
| Msa0188610 | Msa1062230 | 0.800568 | 1.356120e-48 | -8.615850e-47 |
| Msa1021590 | Msa1062230 | 0.810032 | 1.409890e-50 | -8.615850e-47 |
| Msa1042160 | Msa1062230 | 0.805062 | 1.600118e-49 | -8.615850e-47 |
| Msa1044680 | Msa1062230 | 0.805742 | 1.152438e-49 | -8.615850e-47 |
| Msa1062120 | Msa1062230 | 0.940828 | 1.194102e-100 | -8.615850e-47 |
| Msa1062230 | Msa1105640 | 0.822777 | 1.975298e-53 | -8.615850e-47 |
| Msa1062230 | Msa1105780 | 0.889306 | 2.725621e-73 | -8.615850e-47 |
| Msa1062230 | Msa1148960 | 0.813122 | 3.003791e-51 | -8.615850e-47 |
| Msa0270340 | Msa1062230 | 0.818168 | 2.256390e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062230 | MtrunA17_Chr7g0237941 | 91.837 | 147 | 12 | 0 | 1 | 147 | 1 | 147 | 1.84e-89 | 257 |
| Msa1062230 | MtrunA17_Chr4g0010041 | 63.006 | 173 | 57 | 4 | 1 | 167 | 1 | 172 | 9.88e-59 | 182 |
| Msa1062230 | MtrunA17_Chr2g0328051 | 47.297 | 148 | 69 | 3 | 1 | 141 | 1 | 146 | 1.04e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062230 | AT5G02440.1 | 46.821 | 173 | 65 | 6 | 1 | 146 | 1 | 173 | 7.49e-27 | 100 |
Find 47 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTAGCACTTTGCTTTC+TGG | 0.087700 | 7_2:-52865813 | Msa1062230:CDS |
| TAGGATCATAGATGCGTTTC+AGG | 0.207632 | 7_2:-52863190 | Msa1062230:three_prime_UTR |
| CCTACAAGTTATAGACAAAA+TGG | 0.272947 | 7_2:-52863494 | Msa1062230:CDS |
| CAAATTCTCTGCTTCAATCT+TGG | 0.286516 | 7_2:+52863429 | None:intergenic |
| GCTTCGGCTTGTGATTCTTT+TGG | 0.324268 | 7_2:+52863642 | None:intergenic |
| TTGATCTCCTTGAGAGTTGT+AGG | 0.333801 | 7_2:+52863699 | None:intergenic |
| CAGGAAGAAGGGTGGCCATT+TGG | 0.342238 | 7_2:-52865897 | Msa1062230:CDS |
| GAAACCTTAAAACCATGTTT+AGG | 0.360030 | 7_2:-52863209 | Msa1062230:three_prime_UTR |
| GACTCAACCTCACACTTTGT+TGG | 0.365247 | 7_2:-52863455 | Msa1062230:CDS |
| AGTATATTTCATTTAGATCA+TGG | 0.406251 | 7_2:-52863336 | Msa1062230:three_prime_UTR |
| AAAGACAGTAATGGCTCAAC+AGG | 0.413642 | 7_2:-52866137 | Msa1062230:intron |
| GATTATTGAATTCTAGAGTT+GGG | 0.422488 | 7_2:-52865869 | Msa1062230:CDS |
| ATAGTATCAACTTTGATTCA+AGG | 0.430225 | 7_2:+52866212 | None:intergenic |
| TGTGAGGTTGAGTCTTGAAT+AGG | 0.433184 | 7_2:+52863464 | None:intergenic |
| TTGGGGTTGATTCAGGAAGA+AGG | 0.433599 | 7_2:-52865909 | Msa1062230:intron |
| CTCAATTATTATTGCAGTCG+TGG | 0.454755 | 7_2:-52863311 | Msa1062230:three_prime_UTR |
| TTCAATAATCTCAATCCAAA+TGG | 0.457501 | 7_2:+52865882 | None:intergenic |
| TCTGATGAAGAATAAGTTGA+AGG | 0.462420 | 7_2:+52865780 | None:intergenic |
| CTTAATACTGATGCGGTGAA+TGG | 0.470568 | 7_2:-52863593 | Msa1062230:CDS |
| AGATTATTGAATTCTAGAGT+TGG | 0.478548 | 7_2:-52865870 | Msa1062230:CDS |
| GGTAATGATGCTCATTCTCT+TGG | 0.479818 | 7_2:-52863572 | Msa1062230:CDS |
| AGTGAAAACAACCAAGGCTT+CGG | 0.483004 | 7_2:+52863626 | None:intergenic |
| TGGGGTTGATTCAGGAAGAA+GGG | 0.497078 | 7_2:-52865908 | Msa1062230:intron |
| ATTGAATTCTAGAGTTGGGC+TGG | 0.499054 | 7_2:-52865865 | Msa1062230:CDS |
| TTCATCAGATCTTGACACTC+AGG | 0.504319 | 7_2:-52865766 | Msa1062230:intron |
| TTGTGGTTATGATGCCCGTC+TGG | 0.518049 | 7_2:-52863231 | Msa1062230:three_prime_UTR |
| AGAATCACAAGCCGAAGCCT+TGG | 0.520418 | 7_2:-52863637 | Msa1062230:CDS |
| CATGGGTTTGTACAGTCCAC+TGG | 0.521508 | 7_2:-52863779 | Msa1062230:intron |
| GCAGAGAATTTGAACACGAA+TGG | 0.526620 | 7_2:-52863418 | Msa1062230:three_prime_UTR |
| TTGTTCAGAAAAGACAGTAA+TGG | 0.542795 | 7_2:-52866146 | Msa1062230:exon |
| CGCATCTATGATCCTAAACA+TGG | 0.544221 | 7_2:+52863197 | None:intergenic |
| ATCAAGCAGAGGAAGAGTGA+TGG | 0.548599 | 7_2:-52863681 | Msa1062230:CDS |
| AAGAGTGATGGATTCATCAA+AGG | 0.581601 | 7_2:-52863669 | Msa1062230:CDS |
| CAAGCTTCCTACAACTCTCA+AGG | 0.593246 | 7_2:-52863706 | Msa1062230:CDS |
| GGAAGCTTGAAGCTCGAATG+AGG | 0.602326 | 7_2:+52863720 | None:intergenic |
| TATACTAAAATGAGTAACGA+TGG | 0.602491 | 7_2:+52863353 | None:intergenic |
| CATGACAAGAGCATTACACT+AGG | 0.621795 | 7_2:-52863746 | Msa1062230:CDS |
| CTAGTGTAATGCTCTTGTCA+TGG | 0.631907 | 7_2:+52863747 | None:intergenic |
| TTGGCTTCCAACAAAGTGTG+AGG | 0.644693 | 7_2:+52863448 | None:intergenic |
| TGAAGAATAAGTTGAAGGTG+TGG | 0.652313 | 7_2:+52865785 | None:intergenic |
| GAAGAATAAGTTGAAGGTGT+GGG | 0.654137 | 7_2:+52865786 | None:intergenic |
| TTGTAAGCTTAATACTGATG+CGG | 0.657861 | 7_2:-52863600 | Msa1062230:CDS |
| GGTTGATTCAGGAAGAAGGG+TGG | 0.659891 | 7_2:-52865905 | Msa1062230:intron |
| CTCTCAAGGAGATCAAGCAG+AGG | 0.673615 | 7_2:-52863692 | Msa1062230:CDS |
| CAACAAAGTGAAAACAACCA+AGG | 0.675097 | 7_2:+52863620 | None:intergenic |
| GTCATGGAAGAATGATCCAG+TGG | 0.680673 | 7_2:+52863763 | None:intergenic |
| GGCCGATGCGATCAAAATTG+TGG | 0.688826 | 7_2:-52863248 | Msa1062230:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACAACACTTTTAAAAA+AGG | + | chr7_2:52863247-52863266 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGTGTTGTTTTTT+TGG | - | chr7_2:52863248-52863267 | Msa1062230:three_prime_UTR | 15.0% |
| !!! | TGATTTTATTTATATTTTGG+TGG | - | chr7_2:52863595-52863614 | Msa1062230:CDS | 15.0% |
| !!! | GATTTTATTTATATTTTGGT+GGG | - | chr7_2:52863596-52863615 | Msa1062230:CDS | 15.0% |
| !!! | TCTTTCAAATTTTTAAAACA+TGG | + | chr7_2:52863962-52863981 | None:intergenic | 15.0% |
| !! | TTAAAAAGTAGTAAAAGAAT+CGG | + | chr7_2:52864025-52864044 | None:intergenic | 15.0% |
| !!! | ATTCTTTTACTACTTTTTAA+CGG | - | chr7_2:52864025-52864044 | Msa1062230:intron | 15.0% |
| !!! | AATACTTTTTTCTAGTTTTT+TGG | - | chr7_2:52864364-52864383 | Msa1062230:intron | 15.0% |
| !!! | ATACTTTTTTCTAGTTTTTT+GGG | - | chr7_2:52864365-52864384 | Msa1062230:intron | 15.0% |
| !!! | TCTTTTATAGTACAAAATAA+TGG | - | chr7_2:52864573-52864592 | Msa1062230:intron | 15.0% |
| !! | AAGAAAAAAAACATTCTTAA+TGG | - | chr7_2:52865139-52865158 | Msa1062230:intron | 15.0% |
| !! | AAATGAAAATCTTACTTTAA+AGG | - | chr7_2:52865321-52865340 | Msa1062230:intron | 15.0% |
| !!! | TTTTGATTGAATCATTTTGA+GGG | - | chr7_2:52863528-52863547 | Msa1062230:CDS | 20.0% |
| !!! | AAACACTAGCTTTAAAAATA+TGG | + | chr7_2:52863868-52863887 | None:intergenic | 20.0% |
| !!! | CTTTGAAAATTTGAAAGAAT+CGG | - | chr7_2:52864249-52864268 | Msa1062230:intron | 20.0% |
| !! | GAATAAATACCAAATCTTTA+TGG | + | chr7_2:52864878-52864897 | None:intergenic | 20.0% |
| !!! | TTTTAGTTGATTCTCTTATT+TGG | - | chr7_2:52864909-52864928 | Msa1062230:intron | 20.0% |
| !!! | ATTGTTTTTTTGTTAGCATA+TGG | - | chr7_2:52865045-52865064 | Msa1062230:intron | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | + | chr7_2:52865559-52865578 | None:intergenic | 20.0% |
| !! | AGTATATTTCATTTAGATCA+TGG | - | chr7_2:52866195-52866214 | Msa1062230:five_prime_UTR | 20.0% |
| ! | ATAGTATCAACTTTGATTCA+AGG | + | chr7_2:52863322-52863341 | None:intergenic | 25.0% |
| !!! | CTTTTGATTGAATCATTTTG+AGG | - | chr7_2:52863527-52863546 | Msa1062230:CDS | 25.0% |
| ! | TCAGCATATTTATGAGATTA+TGG | - | chr7_2:52863562-52863581 | Msa1062230:CDS | 25.0% |
| !!! | TTTATATTTTGGTGGGTTTT+TGG | - | chr7_2:52863603-52863622 | Msa1062230:CDS | 25.0% |
| !!! | TTATATTTTGGTGGGTTTTT+GGG | - | chr7_2:52863604-52863623 | Msa1062230:CDS | 25.0% |
| ! | TTCAATAATCTCAATCCAAA+TGG | + | chr7_2:52863652-52863671 | None:intergenic | 25.0% |
| !!! | AGATTATTGAATTCTAGAGT+TGG | - | chr7_2:52863661-52863680 | Msa1062230:CDS | 25.0% |
| !!! | GATTATTGAATTCTAGAGTT+GGG | - | chr7_2:52863662-52863681 | Msa1062230:CDS | 25.0% |
| ! | ACAGTTACAAGAAAACAAAA+AGG | + | chr7_2:52863895-52863914 | None:intergenic | 25.0% |
| ! | AAATGAACAAGTTACAAGTA+AGG | + | chr7_2:52864189-52864208 | None:intergenic | 25.0% |
| !!! | TTAGTAAGATTTTCAAGTCA+TGG | + | chr7_2:52864424-52864443 | None:intergenic | 25.0% |
| ! | ATAGGATCAATAACCAAAAA+GGG | + | chr7_2:52864652-52864671 | None:intergenic | 25.0% |
| ! | AATAGGATCAATAACCAAAA+AGG | + | chr7_2:52864653-52864672 | None:intergenic | 25.0% |
| !! | AAGACTTTAACTTTCAACAA+AGG | + | chr7_2:52865106-52865125 | None:intergenic | 25.0% |
| ! | TTAAAGTCTTCTATGATGTT+TGG | - | chr7_2:52865116-52865135 | Msa1062230:intron | 25.0% |
| ! | TGTTACTAAAGAAACATCAA+AGG | + | chr7_2:52865256-52865275 | None:intergenic | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | - | chr7_2:52865590-52865609 | Msa1062230:intron | 25.0% |
| ! | TATACTAAAATGAGTAACGA+TGG | + | chr7_2:52866181-52866200 | None:intergenic | 25.0% |
| !! | CACATTTTTCTACAATGTAA+AGG | + | chr7_2:52866264-52866283 | None:intergenic | 25.0% |
| ! | CTTTACATTGTAGAAAAATG+TGG | - | chr7_2:52866262-52866281 | Msa1062230:five_prime_UTR | 25.0% |
| !!! | GTGTTGTTTTTTTGGTTAGA+AGG | - | chr7_2:52863256-52863275 | Msa1062230:three_prime_UTR | 30.0% |
| ! | ACTGTCTTTTCTGAACAAAA+TGG | + | chr7_2:52863383-52863402 | None:intergenic | 30.0% |
| TTGTTCAGAAAAGACAGTAA+TGG | - | chr7_2:52863385-52863404 | Msa1062230:three_prime_UTR | 30.0% | |
| !!! | TATATTTTGGTGGGTTTTTG+GGG | - | chr7_2:52863605-52863624 | Msa1062230:CDS | 30.0% |
| ! | GTGAGAAATAGTGATTTTTC+AGG | - | chr7_2:52863688-52863707 | Msa1062230:CDS | 30.0% |
| !!! | AATAGTGATTTTTCAGGTTC+AGG | - | chr7_2:52863694-52863713 | Msa1062230:CDS | 30.0% |
| ! | TCTGATGAAGAATAAGTTGA+AGG | + | chr7_2:52863754-52863773 | None:intergenic | 30.0% |
| ATGGTATCAAACAAACAAAG+TGG | + | chr7_2:52863849-52863868 | None:intergenic | 30.0% | |
| ! | AATCGATTCAATCGATTGAA+AGG | - | chr7_2:52863981-52864000 | Msa1062230:intron | 30.0% |
| ! | ATCGATTCAATCGATTGAAA+GGG | - | chr7_2:52863982-52864001 | Msa1062230:intron | 30.0% |
| ! | CTTTTTAACGGTGATTGAAT+CGG | - | chr7_2:52864037-52864056 | Msa1062230:intron | 30.0% |
| AACCTAAACAATCATTGAGT+TGG | + | chr7_2:52864087-52864106 | None:intergenic | 30.0% | |
| TTGGTATCAAACAAACAAAG+TGG | + | chr7_2:52864134-52864153 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCAAACACTAGCAT+TGG | + | chr7_2:52864161-52864180 | None:intergenic | 30.0% |
| GTATTGTAGTCTGATTGAAT+CGG | - | chr7_2:52864330-52864349 | Msa1062230:intron | 30.0% | |
| TATTGTAGTCTGATTGAATC+GGG | - | chr7_2:52864331-52864350 | Msa1062230:intron | 30.0% | |
| ACTGCAATGATTTGAAAATC+TGG | + | chr7_2:52864459-52864478 | None:intergenic | 30.0% | |
| TGATGACACTATTTCAGTTA+TGG | - | chr7_2:52864478-52864497 | Msa1062230:intron | 30.0% | |
| ! | ACACAATGATATACCCTTTT+TGG | - | chr7_2:52864636-52864655 | Msa1062230:intron | 30.0% |
| TACTCTTTATTACTTTCACC+TGG | - | chr7_2:52864712-52864731 | Msa1062230:intron | 30.0% | |
| AACCAAAGTACATAGTCAAA+AGG | + | chr7_2:52864756-52864775 | None:intergenic | 30.0% | |
| TCATAATTTCTCTGATGAAG+AGG | - | chr7_2:52864776-52864795 | Msa1062230:intron | 30.0% | |
| TCCAAAATCCAACATTGAAT+AGG | - | chr7_2:52864824-52864843 | Msa1062230:intron | 30.0% | |
| ! | TCCTATTCAATGTTGGATTT+TGG | + | chr7_2:52864828-52864847 | None:intergenic | 30.0% |
| ATCCAACATTGAATAGGAAA+AGG | - | chr7_2:52864830-52864849 | Msa1062230:intron | 30.0% | |
| ! | TTCCTTTTCCTATTCAATGT+TGG | + | chr7_2:52864835-52864854 | None:intergenic | 30.0% |
| TGAACATGTCCATAAAGATT+TGG | - | chr7_2:52864866-52864885 | Msa1062230:intron | 30.0% | |
| ATCAACTAAAAGAAAACGAC+AGG | + | chr7_2:52864900-52864919 | None:intergenic | 30.0% | |
| CTAGTACATACATAATTGCT+TGG | - | chr7_2:52864951-52864970 | Msa1062230:intron | 30.0% | |
| ! | TTACTTTAAAGGCTGAAGTA+AGG | - | chr7_2:52865332-52865351 | Msa1062230:intron | 30.0% |
| TTTGTTAACCCATCATGATT+TGG | - | chr7_2:52865480-52865499 | Msa1062230:intron | 30.0% | |
| AGTATTCATGCTTCATAGTT+TGG | - | chr7_2:52865671-52865690 | Msa1062230:intron | 30.0% | |
| TTGTAAGCTTAATACTGATG+CGG | - | chr7_2:52865931-52865950 | Msa1062230:intron | 30.0% | |
| !! | CCATTTTGTCTATAACTTGT+AGG | + | chr7_2:52866040-52866059 | None:intergenic | 30.0% |
| CCTACAAGTTATAGACAAAA+TGG | - | chr7_2:52866037-52866056 | Msa1062230:intron | 30.0% | |
| GAAACCTTAAAACCATGTTT+AGG | - | chr7_2:52866322-52866341 | Msa1062230:five_prime_UTR | 30.0% | |
| !! | TGATCCTAAACATGGTTTTA+AGG | + | chr7_2:52866329-52866348 | None:intergenic | 30.0% |
| TCATTTAGCACTTTGCTTTC+TGG | - | chr7_2:52863718-52863737 | Msa1062230:CDS | 35.0% | |
| ! | GAAGAATAAGTTGAAGGTGT+GGG | + | chr7_2:52863748-52863767 | None:intergenic | 35.0% |
| ! | TGAAGAATAAGTTGAAGGTG+TGG | + | chr7_2:52863749-52863768 | None:intergenic | 35.0% |
| TCGATTCAATCGATTGAAAG+GGG | - | chr7_2:52863983-52864002 | Msa1062230:intron | 35.0% | |
| !!! | TTGGTGAGATTTTCAAGTCA+TGG | + | chr7_2:52864068-52864087 | None:intergenic | 35.0% |
| CACCAACTCAATGATTGTTT+AGG | - | chr7_2:52864082-52864101 | Msa1062230:intron | 35.0% | |
| !! | AAACACTAGCATTGGCAATT+TGG | + | chr7_2:52864153-52864172 | None:intergenic | 35.0% |
| ! | AAAGAATCGGCTAGTTCAAT+CGG | - | chr7_2:52864262-52864281 | Msa1062230:intron | 35.0% |
| ATCAAACCAATCGGTAAAGT+GGG | + | chr7_2:52864303-52864322 | None:intergenic | 35.0% | |
| AATCAAACCAATCGGTAAAG+TGG | + | chr7_2:52864304-52864323 | None:intergenic | 35.0% | |
| !! | TTTACCGATTGGTTTGATTC+TGG | - | chr7_2:52864305-52864324 | Msa1062230:intron | 35.0% |
| ACAACCAGAATCAAACCAAT+CGG | + | chr7_2:52864312-52864331 | None:intergenic | 35.0% | |
| !!! | TTTTCAAGTCATGGTTCAAC+TGG | + | chr7_2:52864059-52864078 | None:intergenic | 35.0% |
| ! | TATTACTTTCACCTGGTTTG+TGG | - | chr7_2:52864719-52864738 | Msa1062230:intron | 35.0% |
| AAGTACATAGTCAAAAGGCA+TGG | + | chr7_2:52864751-52864770 | None:intergenic | 35.0% | |
| !! | TGCCTTTTGACTATGTACTT+TGG | - | chr7_2:52864751-52864770 | Msa1062230:intron | 35.0% |
| TTAGATAACAACCCTTGAGA+AGG | - | chr7_2:52865163-52865182 | Msa1062230:intron | 35.0% | |
| TAGATAACAACCCTTGAGAA+GGG | - | chr7_2:52865164-52865183 | Msa1062230:intron | 35.0% | |
| TTCTTTCTTACCCTTCTCAA+GGG | + | chr7_2:52865177-52865196 | None:intergenic | 35.0% | |
| TGTCAATCTAAACATGCACT+CGG | + | chr7_2:52865430-52865449 | None:intergenic | 35.0% | |
| GTTTAGATTGACAGTGTACT+TGG | - | chr7_2:52865437-52865456 | Msa1062230:intron | 35.0% | |
| GTTTCGTACCAAATCATGAT+GGG | + | chr7_2:52865491-52865510 | None:intergenic | 35.0% | |
| TGTTTCGTACCAAATCATGA+TGG | + | chr7_2:52865492-52865511 | None:intergenic | 35.0% | |
| !! | TCATGATTTGGTACGAAACA+CGG | - | chr7_2:52865492-52865511 | Msa1062230:intron | 35.0% |
| TATGAAGCATGAATACTCCT+CGG | + | chr7_2:52865668-52865687 | None:intergenic | 35.0% | |
| TTGCCTTAACTCACTTAACA+TGG | - | chr7_2:52865734-52865753 | Msa1062230:intron | 35.0% | |
| TGCCTTAACTCACTTAACAT+GGG | - | chr7_2:52865735-52865754 | Msa1062230:intron | 35.0% | |
| AACCCATGTTAAGTGAGTTA+AGG | + | chr7_2:52865740-52865759 | None:intergenic | 35.0% | |
| !! | AAGAGTGATGGATTCATCAA+AGG | - | chr7_2:52865862-52865881 | Msa1062230:CDS | 35.0% |
| CAACAAAGTGAAAACAACCA+AGG | + | chr7_2:52865914-52865933 | None:intergenic | 35.0% | |
| CAAATTCTCTGCTTCAATCT+TGG | + | chr7_2:52866105-52866124 | None:intergenic | 35.0% | |
| ! | ATGGTTTTCTCTAGTTAGTG+TGG | - | chr7_2:52866132-52866151 | Msa1062230:intron | 35.0% |
| CTCAATTATTATTGCAGTCG+TGG | - | chr7_2:52866220-52866239 | Msa1062230:five_prime_UTR | 35.0% | |
| !! | AACCACAATTTTGATCGCAT+CGG | + | chr7_2:52866288-52866307 | None:intergenic | 35.0% |
| !!! | ATGGTTTTAAGGTTTCCAGA+CGG | + | chr7_2:52866318-52866337 | None:intergenic | 35.0% |
| AAAGACAGTAATGGCTCAAC+AGG | - | chr7_2:52863394-52863413 | Msa1062230:three_prime_UTR | 40.0% | |
| !! | ATTGAATTCTAGAGTTGGGC+TGG | - | chr7_2:52863666-52863685 | Msa1062230:CDS | 40.0% |
| TTCATCAGATCTTGACACTC+AGG | - | chr7_2:52863765-52863784 | Msa1062230:CDS | 40.0% | |
| CAATCGATTGAAAGGGGAAT+CGG | - | chr7_2:52863989-52864008 | Msa1062230:intron | 40.0% | |
| GCTAGTTCAATCGGTTGAAA+GGG | - | chr7_2:52864271-52864290 | Msa1062230:intron | 40.0% | |
| CTAGTTCAATCGGTTGAAAG+GGG | - | chr7_2:52864272-52864291 | Msa1062230:intron | 40.0% | |
| TGGTTCAGTCAAGGTTGTAT+CGG | + | chr7_2:52864395-52864414 | None:intergenic | 40.0% | |
| CATGGTTATAACCACAAACC+AGG | + | chr7_2:52864733-52864752 | None:intergenic | 40.0% | |
| ! | GGATTTTGGACTCATTCTCA+AGG | + | chr7_2:52864814-52864833 | None:intergenic | 40.0% |
| ACATAATTGCTTGGCTCCTA+TGG | - | chr7_2:52864960-52864979 | Msa1062230:intron | 40.0% | |
| CATAATTGCTTGGCTCCTAT+GGG | - | chr7_2:52864961-52864980 | Msa1062230:intron | 40.0% | |
| ATAATTGCTTGGCTCCTATG+GGG | - | chr7_2:52864962-52864981 | Msa1062230:intron | 40.0% | |
| !! | TGGACTAGCACATCATTGTT+TGG | - | chr7_2:52864994-52865013 | Msa1062230:intron | 40.0% |
| CTTCTTTCTTACCCTTCTCA+AGG | + | chr7_2:52865178-52865197 | None:intergenic | 40.0% | |
| TTTGGTACGAAACACGGATA+CGG | - | chr7_2:52865498-52865517 | Msa1062230:intron | 40.0% | |
| CTAGTGTAATGCTCTTGTCA+TGG | + | chr7_2:52865787-52865806 | None:intergenic | 40.0% | |
| !! | CATGACAAGAGCATTACACT+AGG | - | chr7_2:52865785-52865804 | Msa1062230:CDS | 40.0% |
| TTGATCTCCTTGAGAGTTGT+AGG | + | chr7_2:52865835-52865854 | None:intergenic | 40.0% | |
| AGTGAAAACAACCAAGGCTT+CGG | + | chr7_2:52865908-52865927 | None:intergenic | 40.0% | |
| CTTAATACTGATGCGGTGAA+TGG | - | chr7_2:52865938-52865957 | Msa1062230:intron | 40.0% | |
| GGTAATGATGCTCATTCTCT+TGG | - | chr7_2:52865959-52865978 | Msa1062230:intron | 40.0% | |
| TGTGAGGTTGAGTCTTGAAT+AGG | + | chr7_2:52866070-52866089 | None:intergenic | 40.0% | |
| GCAGAGAATTTGAACACGAA+TGG | - | chr7_2:52866113-52866132 | Msa1062230:intron | 40.0% | |
| !!! | TGGTTTTAAGGTTTCCAGAC+GGG | + | chr7_2:52866317-52866336 | None:intergenic | 40.0% |
| CGCATCTATGATCCTAAACA+TGG | + | chr7_2:52866337-52866356 | None:intergenic | 40.0% | |
| TAGGATCATAGATGCGTTTC+AGG | - | chr7_2:52866341-52866360 | Msa1062230:five_prime_UTR | 40.0% | |
| !!! | TGGGTTTTTGGGGTTGATTC+AGG | - | chr7_2:52863615-52863634 | Msa1062230:CDS | 45.0% |
| ! | TTGGGGTTGATTCAGGAAGA+AGG | - | chr7_2:52863622-52863641 | Msa1062230:CDS | 45.0% |
| ! | TGGGGTTGATTCAGGAAGAA+GGG | - | chr7_2:52863623-52863642 | Msa1062230:CDS | 45.0% |
| GATTGAAAGGGGAATCGGAT+TGG | - | chr7_2:52863994-52864013 | Msa1062230:intron | 45.0% | |
| ! | GGCTAGTTCAATCGGTTGAA+AGG | - | chr7_2:52864270-52864289 | Msa1062230:intron | 45.0% |
| ! | TGGTTCAACTGGTTCAGTCA+AGG | + | chr7_2:52864404-52864423 | None:intergenic | 45.0% |
| ATACATGCTCACTGCTCAGT+AGG | + | chr7_2:52864676-52864695 | None:intergenic | 45.0% | |
| TGATGTGCTAGTCCATGCTT+TGG | + | chr7_2:52864989-52865008 | None:intergenic | 45.0% | |
| TGTACTTGGCGAAATCACGA+TGG | - | chr7_2:52865451-52865470 | Msa1062230:intron | 45.0% | |
| !! | TACAAGTGTCGGTGTTGTGT+CGG | - | chr7_2:52865601-52865620 | Msa1062230:intron | 45.0% |
| GCATGAATACTCCTCGGATT+AGG | + | chr7_2:52865662-52865681 | None:intergenic | 45.0% | |
| GTCATGGAAGAATGATCCAG+TGG | + | chr7_2:52865771-52865790 | None:intergenic | 45.0% | |
| CAAGCTTCCTACAACTCTCA+AGG | - | chr7_2:52865825-52865844 | Msa1062230:CDS | 45.0% | |
| ATCAAGCAGAGGAAGAGTGA+TGG | - | chr7_2:52865850-52865869 | Msa1062230:CDS | 45.0% | |
| !! | GCTTCGGCTTGTGATTCTTT+TGG | + | chr7_2:52865892-52865911 | None:intergenic | 45.0% |
| GACTCAACCTCACACTTTGT+TGG | - | chr7_2:52866076-52866095 | Msa1062230:intron | 45.0% | |
| TTGGCTTCCAACAAAGTGTG+AGG | + | chr7_2:52866086-52866105 | None:intergenic | 45.0% | |
| !!! | TTTTGATTTTATTTATATTT+TGG | - | chr7_2:52863592-52863611 | Msa1062230:CDS | 5.0% |
| ! | GGTTGATTCAGGAAGAAGGG+TGG | - | chr7_2:52863626-52863645 | Msa1062230:CDS | 50.0% |
| GAACGACCCACTTTACCGAT+TGG | - | chr7_2:52864294-52864313 | Msa1062230:intron | 50.0% | |
| GCTCACTGCTCAGTAGGAAT+AGG | + | chr7_2:52864670-52864689 | None:intergenic | 50.0% | |
| AACACGGATACGGACACGTA+CGG | - | chr7_2:52865508-52865527 | Msa1062230:intron | 50.0% | |
| CACGTACGGTGGATACAACA+CGG | - | chr7_2:52865522-52865541 | Msa1062230:intron | 50.0% | |
| ACACGACACGTCTATGACAC+CGG | - | chr7_2:52865630-52865649 | Msa1062230:intron | 50.0% | |
| CATGGGTTTGTACAGTCCAC+TGG | - | chr7_2:52865752-52865771 | Msa1062230:intron | 50.0% | |
| GGAAGCTTGAAGCTCGAATG+AGG | + | chr7_2:52865814-52865833 | None:intergenic | 50.0% | |
| CTCTCAAGGAGATCAAGCAG+AGG | - | chr7_2:52865839-52865858 | Msa1062230:CDS | 50.0% | |
| AGAATCACAAGCCGAAGCCT+TGG | - | chr7_2:52865894-52865913 | Msa1062230:CDS | 50.0% | |
| GGCCGATGCGATCAAAATTG+TGG | - | chr7_2:52866283-52866302 | Msa1062230:five_prime_UTR | 50.0% | |
| TTGTGGTTATGATGCCCGTC+TGG | - | chr7_2:52866300-52866319 | Msa1062230:five_prime_UTR | 50.0% | |
| CAGGAAGAAGGGTGGCCATT+TGG | - | chr7_2:52863634-52863653 | Msa1062230:CDS | 55.0% | |
| CTCCTATGGGGTCCAAAGCA+TGG | - | chr7_2:52864974-52864993 | Msa1062230:intron | 55.0% | |
| ! | GTCCATGCTTTGGACCCCAT+AGG | + | chr7_2:52864979-52864998 | None:intergenic | 55.0% |
| !! | TGTCGGTGTTGTGTCGGTGT+CGG | - | chr7_2:52865607-52865626 | Msa1062230:intron | 55.0% |
| CACGACACGTCTATGACACC+GGG | - | chr7_2:52865631-52865650 | Msa1062230:intron | 55.0% | |
| ACGGATACGGACACGTACGG+TGG | - | chr7_2:52865511-52865530 | Msa1062230:intron | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr7_2:52865652-52865671 | None:intergenic | 60.0% |
| ACCGGGACACGCCTAATCCG+AGG | - | chr7_2:52865648-52865667 | Msa1062230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 52863178 | 52866375 | 52863178 | ID=Msa1062230;Name=Msa1062230 |
| chr7_2 | mRNA | 52863178 | 52866375 | 52863178 | ID=Msa1062230-mRNA-1;Parent=Msa1062230;Name=Msa1062230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=226|1|1|1|1|1|3|264|168 |
| chr7_2 | exon | 52863178 | 52863786 | 52863178 | ID=Msa1062230-mRNA-1:exon:9548;Parent=Msa1062230-mRNA-1 |
| chr7_2 | exon | 52865767 | 52865916 | 52865767 | ID=Msa1062230-mRNA-1:exon:9547;Parent=Msa1062230-mRNA-1 |
| chr7_2 | exon | 52866138 | 52866375 | 52866138 | ID=Msa1062230-mRNA-1:exon:9546;Parent=Msa1062230-mRNA-1 |
| chr7_2 | five_prime_UTR | 52866150 | 52866375 | 52866150 | ID=Msa1062230-mRNA-1:five_prime_utr;Parent=Msa1062230-mRNA-1 |
| chr7_2 | CDS | 52866138 | 52866149 | 52866138 | ID=Msa1062230-mRNA-1:cds;Parent=Msa1062230-mRNA-1 |
| chr7_2 | CDS | 52865767 | 52865916 | 52865767 | ID=Msa1062230-mRNA-1:cds;Parent=Msa1062230-mRNA-1 |
| chr7_2 | CDS | 52863442 | 52863786 | 52863442 | ID=Msa1062230-mRNA-1:cds;Parent=Msa1062230-mRNA-1 |
| chr7_2 | three_prime_UTR | 52863178 | 52863441 | 52863178 | ID=Msa1062230-mRNA-1:three_prime_utr;Parent=Msa1062230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
