AlfalfaGEDB | Msa1105640

M. sativa cultivar zhongmu-4 / Msa1105640

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105640	XP_013448801.1	97.801	682	14	1	1	682	1	681	0.0	1359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105640	sp\|P33543\|TMKL1_ARATH	72.321	672	176	4	12	682	12	674	0.0	921

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105640	A0A072U0Z5	97.801	682	14	1	1	682	1	681	0.0	1359

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1105640	0.859139	5.084384e-63	-8.615850e-47
Msa0000560	Msa1105640	0.805041	1.616321e-49	-8.615850e-47
Msa0001940	Msa1105640	0.807687	4.475933e-50	-8.615850e-47
Msa0002370	Msa1105640	0.803132	4.032806e-49	-8.615850e-47
Msa0002580	Msa1105640	0.858220	9.566354e-63	-8.615850e-47
Msa0005890	Msa1105640	0.823907	1.075881e-53	-8.615850e-47
Msa0017670	Msa1105640	0.851915	6.502703e-61	-8.615850e-47
Msa0017930	Msa1105640	0.807321	5.352012e-50	-8.615850e-47
Msa0017950	Msa1105640	0.809108	2.226547e-50	-8.615850e-47
Msa0018160	Msa1105640	0.810732	9.959966e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105640	MtrunA17_Chr7g0237801	97.801	682	14	1	1	682	1	681	0.0	1359
Msa1105640	MtrunA17_Chr5g0437741	35.795	623	333	14	104	670	165	776	8.76e-98	318
Msa1105640	MtrunA17_Chr5g0437741	37.870	169	95	4	105	267	142	306	1.77e-17	87.0
Msa1105640	MtrunA17_Chr8g0393211	35.737	624	294	18	105	668	74	650	2.93e-87	287
Msa1105640	MtrunA17_Chr6g0478621	35.135	629	289	19	104	659	65	647	3.32e-87	287
Msa1105640	MtrunA17_Chr5g0434551	34.983	586	304	17	107	659	68	609	1.10e-85	282
Msa1105640	MtrunA17_Chr5g0432851	37.950	556	285	19	139	661	100	628	6.47e-82	272
Msa1105640	MtrunA17_Chr3g0128551	33.849	582	311	17	108	659	76	613	8.37e-81	269
Msa1105640	MtrunA17_Chr3g0108301	35.813	578	304	19	139	676	92	642	1.14e-78	263
Msa1105640	MtrunA17_Chr5g0428541	36.062	513	282	18	176	661	95	588	7.08e-78	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105640	AT3G24660.1	72.321	672	176	4	12	682	12	674	0.0	921
Msa1105640	AT3G51740.1	36.391	654	356	17	44	662	182	810	9.99e-101	327
Msa1105640	AT3G51740.1	41.916	167	87	5	105	267	120	280	3.73e-21	99.0
Msa1105640	AT3G08680.1	33.959	639	319	22	59	662	46	616	1.70e-83	276
Msa1105640	AT3G08680.2	33.959	639	319	22	59	662	46	616	1.70e-83	276
Msa1105640	AT5G58300.3	35.165	546	306	14	144	661	105	630	2.11e-78	263
Msa1105640	AT5G58300.1	35.165	546	306	14	144	661	105	630	2.11e-78	263
Msa1105640	AT5G58300.2	35.165	546	306	14	144	661	105	630	2.11e-78	263
Msa1105640	AT2G26730.1	31.415	643	327	19	60	659	47	618	2.78e-77	260
Msa1105640	AT1G48480.1	33.101	574	297	16	163	662	84	644	1.09e-74	253

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Find 180 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGTTCTCTCATCA+TGG	0.485590	7_3:-44333071	Msa1105640:CDS
AAAATCAAACCTTCACTTCA+AGG	0.340725	7_3:-44333102	Msa1105640:CDS
AAAGGTGTACCACATAAATC+AGG	0.531650	7_3:+44332376	None:intergenic
AAATTTGGTAATTTAGTATT+AGG	0.241501	7_3:-44330147	Msa1105640:three_prime_UTR
AACAATGGAAGTATTTGATG+TGG	0.607337	7_3:-44330538	Msa1105640:CDS
AACCAGTGCTGAACTGGGCT+AGG	0.508824	7_3:-44330938	Msa1105640:CDS
AACGGTGGCGGAAATTCGAT+TGG	0.568978	7_3:-44332175	Msa1105640:CDS
AAGAATTCTTCATTGAGTTC+TGG	0.405470	7_3:-44332340	Msa1105640:CDS
AAGATCCAAGAATGTTCTCG+TGG	0.637514	7_3:-44330832	Msa1105640:CDS
AAGCGAGAAGTTGAAGAAAG+AGG	0.539848	7_3:+44333293	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTGTTAATTCAACGGTT+GGG	+	chr7_3:44330088-44330107	None:intergenic	30.0%
CTTCCACTTTGTTAATTCAA+CGG	+	chr7_3:44330093-44330112	None:intergenic	30.0%
AATGAGTGTAACAAGGAATA+AGG	+	chr7_3:44330133-44330152	None:intergenic	30.0%
TTTGTGTGTTTCTCTTTACT+GGG	+	chr7_3:44330180-44330199	None:intergenic	30.0%
AAAATCAAACCTTCACTTCA+AGG	-	chr7_3:44330392-44330411	Msa1105640:CDS	30.0%
AATGAAAGATTGTTCCATTG+TGG	+	chr7_3:44330536-44330555	None:intergenic	30.0%
TCACACAAATTCCATATAGA+AGG	+	chr7_3:44330773-44330792	None:intergenic	30.0%
CTTCATGGAAATTCTTTATC+TGG	-	chr7_3:44330812-44330831	Msa1105640:CDS	30.0%
CCAAAACTAGTAACAAAATC+AGG	+	chr7_3:44330926-44330945	None:intergenic	30.0%
TTTAGTGGTGTAATTCCTTA+TGG	-	chr7_3:44330980-44330999	Msa1105640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	44330012	44333504	44330012	ID=Msa1105640;Name=Msa1105640
chr7_3	mRNA	44330012	44333504	44330012	ID=Msa1105640-mRNA-1;Parent=Msa1105640;Name=Msa1105640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=254\|1\|1\|1\|1\|1\|2\|323\|682
chr7_3	exon	44330012	44330975	44330012	ID=Msa1105640-mRNA-1:exon:9153;Parent=Msa1105640-mRNA-1
chr7_3	exon	44331843	44333504	44331843	ID=Msa1105640-mRNA-1:exon:9152;Parent=Msa1105640-mRNA-1
chr7_3	five_prime_UTR	44333251	44333504	44333251	ID=Msa1105640-mRNA-1:five_prime_utr;Parent=Msa1105640-mRNA-1
chr7_3	CDS	44331843	44333250	44331843	ID=Msa1105640-mRNA-1:cds;Parent=Msa1105640-mRNA-1
chr7_3	CDS	44330335	44330975	44330335	ID=Msa1105640-mRNA-1:cds;Parent=Msa1105640-mRNA-1
chr7_3	three_prime_UTR	44330012	44330334	44330012	ID=Msa1105640-mRNA-1:three_prime_utr;Parent=Msa1105640-mRNA-1

Gene Sequence

>Msa1105640

ATGTCTTCTCTCAAAAACCTTTCCTCTTTCTACCTTCTCTTCTTCATCATCTTCTTCTTCTGCAACAAAGCCTCAACAAAAACTACACCACCTTCAACTTCCTCTGACATAGAACTTCTTTTGTTCAAAATCAAACCTTCACTTCAAGGTAAAACTGAAAACCTTGTTCTCTCATCATGGAACACTTCAATCCCACTTTGTCAATGGAGAGGACTCAAATGGGTCTTCACAAACGGTTCATCACTTTCATGCACTGACTTATCTTCACCACAATGGAACAATCTTTCATTTTTCAAAGACCCTTTTTTGCATTTGTTTTCTCTTCAACTACCTTCTGCAAATCTCTCTGGTTCTCTCCCTAGAGAGATTGGTCAGTTTCCCATGCTTCAAAGTCTTTACCTTAATATTAACTCATTGAGTGGTACTGTTCCTCTTGAACTTGGTTATGGTTCTTCACTCTCTGAACTTGATTTGAGTGATAATCTTTTGAATGGTGTTCTTCCACCTTCTATATGGAATTTGTGTGATAAACTTGTTTCTCTTAAACTTCATGGAAATTCTTTATCTGGGTCTGTTTCAGAACCTGCATTACCTGATTCATCTTGTAAATTTTTGCAGTTTCTTGATTTAGGTGGGAATAAATTTTCTGGTAATTTTCCTGATTTTGTTACTAGTTTTGGTGCTTTGAAACAGCTTGATTTAGGGAATAATATGTTTAGTGGTGTAATTCCTTATGGTTTAGTTGGACTTAGGTTAGAAAAATTGAATCTTTCTCATAATAACTTTAGTGGGGTGGTGCCATTTTTCGGAGAATCGTCGAAATTCGGTGTTGATGTTTTTGAAGGGAATAGTCCTGATTTATGTGGTACACCTTTGCAAAGTTGTGGCAAGAATTCTTCATTGAGTTCTGGTGCTGTTGCTGGCCTTGTTATCAGTCTTATGACAGGTGCTGTGGTTTTGGCTTCATTGTTGATTGGTTATATGCAAAACAAGAAGAAAAAGGGGAGTGGTGATAGTGAAGATGAATTGAATGATGAAGAAGACGATGAAGAAAACGGTGGCGGAAATTCGATTGGTGGAAATGGTGAAGGGAAGCTTATGTTGTTTCCGGGTGGTGAGAATTTGACACTTGATGATGTGTTGAATGCGACCGGTCAAGTTATGGAGAAGACGTGTTATGGAACAGCTTATAAGGCTAAGCTTGCTGATGGTGGAACAATTGCTTTGAGGTTGTTGAGAGAAGGTACTTGCAAGGATAGGACTTCGTGTTTGGCGGTTATAAAACAGTTGGGGAAAATTCGACATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAAGGGAAAAGAGGGGAGAAGCTGCTTATTTATGATTATTTGCCTCTCAGAACTCTTCATGATCTTTTGCATGAAATTAAAGCAGGAAAACCAGTGCTGAACTGGGCTAGGAGACACAAGATTGCATTAGGTATAGCAAGAGGACTAGCATATCTTCATACAGGACTCGATGCTCCTATAACTCACGCAAACATAAGATCCAAGAATGTTCTCGTGGACGACTTCTTCGTTGCCAGGGTCTCCGATTTCGCCCTGGATAAACTGATGATCCCTTCCATAGCTGACGAGATGGTGGCACTTGCCAAGACTGACGGCTACAAAGCACCGGAGCTTCAAAGAATGAAGAAATGTAACTCGAGGACCGACGTTTACGCGTTCGGTATATTACTTCTCGAAATCTTGATCGGTAAGAAGCCTGGTAAGAACGGAAGAAGCAGTGAGTACGTGGATTTACCTTCGATGGTGAAAGTAGCGGTTCTGGAGGAGACAACAATGGAAGTATTTGATGTGGAACTGTTGAAAGGGATAAGAAGTCCGATGGAAGACGGTTTGGTTCAGGCACTGAAGCTAGCAATGGGATGTTGTGCACCTGTGGCATCGGTTAGACCGAGTATGGAAGAAGTTGTGAGGCAATTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCTACTGAGACAAGAAGTGGAAGTATTACACCGTTTTGA

Protein sequence

>Msa1105640

MSSLKNLSSFYLLFFIIFFFCNKASTKTTPPSTSSDIELLLFKIKPSLQGKTENLVLSSWNTSIPLCQWRGLKWVFTNGSSLSCTDLSSPQWNNLSFFKDPFLHLFSLQLPSANLSGSLPREIGQFPMLQSLYLNINSLSGTVPLELGYGSSLSELDLSDNLLNGVLPPSIWNLCDKLVSLKLHGNSLSGSVSEPALPDSSCKFLQFLDLGGNKFSGNFPDFVTSFGALKQLDLGNNMFSGVIPYGLVGLRLEKLNLSHNNFSGVVPFFGESSKFGVDVFEGNSPDLCGTPLQSCGKNSSLSSGAVAGLVISLMTGAVVLASLLIGYMQNKKKKGSGDSEDELNDEEDDEENGGGNSIGGNGEGKLMLFPGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGTCKDRTSCLAVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEIKAGKPVLNWARRHKIALGIARGLAYLHTGLDAPITHANIRSKNVLVDDFFVARVSDFALDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSSEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF*