AlfalfaGEDB | Msa1064990

M. sativa cultivar zhongmu-4 / Msa1064990

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0372290	Msa1064990	0.802107	6.564435e-49	-8.615850e-47
Msa0466780	Msa1064990	0.809950	1.468266e-50	-8.615850e-47
Msa1026230	Msa1064990	0.969473	3.563016e-130	-8.615850e-47
Msa1064990	Msa1153750	0.940735	1.402362e-100	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 13 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGATGTTTGTGAAGA+TGG	0.464513	7_2:+58402161	Msa1064990:CDS
AACCTCATTAACCTCAGAGA+AGG	0.624569	7_2:-58402012	None:intergenic
AATCTCATCAAGTATTAAAA+AGG	0.314463	7_2:-58402054	None:intergenic
ACTCATGTGCCTGAAGTAGC+TGG	0.502856	7_2:+58402113	Msa1064990:CDS
AGTCAAGAGTTCCTTCTCTG+AGG	0.653235	7_2:+58402001	Msa1064990:CDS
CAACCATCTTCACAAACATC+GGG	0.513442	7_2:-58402164	None:intergenic
CATGAGTACAAAATAGATGT+TGG	0.570802	7_2:-58402097	None:intergenic
CCGAAATTTCCAGCTACTTC+AGG	0.353667	7_2:-58402122	None:intergenic
CCTGAAGTAGCTGGAAATTT+CGG	0.364353	7_2:+58402122	Msa1064990:CDS
GAGTACAAAATAGATGTTGG+TGG	0.682447	7_2:-58402094	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGAGTACAAAATAGATGT+TGG	-	chr7_2:58402100-58402119	None:intergenic	30.0%
GAGTACAAAATAGATGTTGG+TGG	-	chr7_2:58402097-58402116	None:intergenic	35.0%
TCAACCATCTTCACAAACAT+CGG	-	chr7_2:58402168-58402187	None:intergenic	35.0%
AACCTCATTAACCTCAGAGA+AGG	-	chr7_2:58402015-58402034	None:intergenic	40.0%
CCTGAAGTAGCTGGAAATTT+CGG	+	chr7_2:58402122-58402141	Msa1064990:CDS	40.0%
AAACCCGATGTTTGTGAAGA+TGG	+	chr7_2:58402161-58402180	Msa1064990:CDS	40.0%
CAACCATCTTCACAAACATC+GGG	-	chr7_2:58402167-58402186	None:intergenic	40.0%
AGTCAAGAGTTCCTTCTCTG+AGG	+	chr7_2:58402001-58402020	Msa1064990:CDS	45.0%
CCGAAATTTCCAGCTACTTC+AGG	-	chr7_2:58402125-58402144	None:intergenic	45.0%
ACTCATGTGCCTGAAGTAGC+TGG	+	chr7_2:58402113-58402132	Msa1064990:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	58401990	58402187	58401990	ID=Msa1064990;Name=Msa1064990
chr7_2	mRNA	58401990	58402187	58401990	ID=Msa1064990-mRNA-1;Parent=Msa1064990;Name=Msa1064990-mRNA-1;_AED=0.46;_eAED=1.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|65
chr7_2	exon	58401990	58402187	58401990	ID=Msa1064990-mRNA-1:exon:11079;Parent=Msa1064990-mRNA-1
chr7_2	CDS	58401990	58402187	58401990	ID=Msa1064990-mRNA-1:cds;Parent=Msa1064990-mRNA-1

Gene Sequence	>Msa1064990 ATGTGGTTGAAAGTCAAGAGTTCCTTCTCTGAGGTTAATGAGGTTGTAGCTCCATCTGAACTAACCTTTTTAATACTTGATGAGATTGGATATTTAGTTTACCACCACCAACATCTATTTTGTACTCATGTGCCTGAAGTAGCTGGAAATTTCGGTAGTTGCGCAACATCAAAACCCGATGTTTGTGAAGATGGTTGA
Protein sequence	>Msa1064990 MWLKVKSSFSEVNEVVAPSELTFLILDEIGYLVYHHQHLFCTHVPEVAGNFGSCATSKPDVCEDG*