Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1065500 | Msa1420490 | 0.804084 | 2.559607e-49 | -8.615850e-47 |
| Msa1065500 | Msa1423390 | 0.805233 | 1.473867e-49 | -8.615850e-47 |
| Msa1065500 | Msa1440370 | 0.807892 | 4.048909e-50 | -8.615850e-47 |
| Msa1065500 | Msa1440810 | 0.801067 | 1.072581e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAGTTTAGTAGAATTT+TGG | 0.143501 | 7_2:-59212807 | Msa1065500:CDS |
| TTTCTACTGTTGAAGAGTTT+TGG | 0.246017 | 7_2:-59210561 | Msa1065500:intron |
| CTGTTGGAGCTGATTTCAAT+TGG | 0.355185 | 7_2:-59210501 | Msa1065500:CDS |
| ATGGACTGTGCGATTTCCTT+GGG | 0.359800 | 7_2:-59210459 | Msa1065500:CDS |
| ACTGTTGGAGCTGGTGGAAA+TGG | 0.416380 | 7_2:-59210478 | Msa1065500:CDS |
| ATGGGAAGTGGGTATGGCCC+TGG | 0.441318 | 7_2:-59212829 | Msa1065500:CDS |
| AATGGACTGTGCGATTTCCT+TGG | 0.447555 | 7_2:-59210460 | Msa1065500:CDS |
| TAGCTGGTTGTATACGTTGT+TGG | 0.449918 | 7_2:-59210423 | Msa1065500:CDS |
| TCTAAGAAAGAAGATGAGAA+TGG | 0.469334 | 7_2:-59212770 | Msa1065500:CDS |
| TTCAATTGGACTGTTGGAGC+TGG | 0.471464 | 7_2:-59210487 | Msa1065500:CDS |
| TCCATGATGGGAAGTGGGTA+TGG | 0.474765 | 7_2:-59212835 | None:intergenic |
| GCTGATTTCAATTGGACTGT+TGG | 0.481903 | 7_2:-59210493 | Msa1065500:CDS |
| GCTCCAACAGCCAACTTGCT+AGG | 0.505369 | 7_2:+59210514 | None:intergenic |
| AATTGGACTGTTGGAGCTGG+TGG | 0.510666 | 7_2:-59210484 | Msa1065500:CDS |
| TATGTTTCCATGATGGGAAG+TGG | 0.512328 | 7_2:-59212841 | None:intergenic |
| AATCCTAGCAAGTTGGCTGT+TGG | 0.536086 | 7_2:-59210517 | Msa1065500:CDS |
| GGGGAAAATCTGATACTAGC+TGG | 0.541718 | 7_2:-59210439 | Msa1065500:CDS |
| CATTCACAATCCTAGCAAGT+TGG | 0.550716 | 7_2:-59210524 | Msa1065500:CDS |
| TGATATTGATGGTAGGCAGA+AGG | 0.578544 | 7_2:-59211980 | Msa1065500:intron |
| GGAAGTGGGTATGGCCCTGG+TGG | 0.594082 | 7_2:-59212826 | Msa1065500:CDS |
| GAGAATGGTTGCACTTACAA+AGG | 0.598806 | 7_2:-59212755 | Msa1065500:intron |
| ATGTTTCCATGATGGGAAGT+GGG | 0.608607 | 7_2:-59212840 | None:intergenic |
| TGGACTGTGCGATTTCCTTG+GGG | 0.643907 | 7_2:-59210458 | Msa1065500:CDS |
| AATTCTACTAAACTTCCACC+AGG | 0.649234 | 7_2:+59212811 | None:intergenic |
| ATTCTACTAAACTTCCACCA+GGG | 0.752369 | 7_2:+59212812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTAATTTTTATTTT+TGG | + | chr7_2:59212364-59212383 | None:intergenic | 0.0% |
| !!! | TAATTTTTAATTTTTATTTT+TGG | + | chr7_2:59212364-59212383 | None:intergenic | 0.0% |
| !!! | CTCTTATTTTATATTTAATT+TGG | - | chr7_2:59212074-59212093 | Msa1065500:intron | 10.0% |
| !!! | TTTTGGAAATTAAAAAAATA+TGG | + | chr7_2:59212347-59212366 | None:intergenic | 10.0% |
| !!! | ATATTTTATTTTTTTGGAAT+CGG | - | chr7_2:59212555-59212574 | Msa1065500:intron | 10.0% |
| !!! | CTCTTATTTTATATTTAATT+TGG | - | chr7_2:59212074-59212093 | Msa1065500:intron | 10.0% |
| !!! | TTTTGGAAATTAAAAAAATA+TGG | + | chr7_2:59212347-59212366 | None:intergenic | 10.0% |
| !!! | ATATTTTATTTTTTTGGAAT+CGG | - | chr7_2:59212555-59212574 | Msa1065500:intron | 10.0% |
| !! | TTACTTATAATAATAACTGA+AGG | - | chr7_2:59210845-59210864 | Msa1065500:intron | 15.0% |
| !!! | ATCATTGATCTTTTTTTTTT+TGG | + | chr7_2:59211550-59211569 | None:intergenic | 15.0% |
| !! | GATTCCAAAAAAATAAAATA+TGG | + | chr7_2:59212556-59212575 | None:intergenic | 15.0% |
| !! | TTACTTATAATAATAACTGA+AGG | - | chr7_2:59210845-59210864 | Msa1065500:intron | 15.0% |
| !!! | ATCATTGATCTTTTTTTTTT+TGG | + | chr7_2:59211550-59211569 | None:intergenic | 15.0% |
| !! | GATTCCAAAAAAATAAAATA+TGG | + | chr7_2:59212556-59212575 | None:intergenic | 15.0% |
| !! | TATGAATGTATATCACAAAA+AGG | + | chr7_2:59210568-59210587 | None:intergenic | 20.0% |
| !! | CATATATATAAATTCAATCC+TGG | - | chr7_2:59210584-59210603 | Msa1065500:intron | 20.0% |
| !!! | ATTTGAAGATTTTCAATACA+AGG | - | chr7_2:59210906-59210925 | Msa1065500:intron | 20.0% |
| !!! | TTTTTTTTTTGAATAACGGT+TGG | - | chr7_2:59211087-59211106 | Msa1065500:intron | 20.0% |
| !! | AATTAATGTAGAAGAATTCT+AGG | - | chr7_2:59211126-59211145 | Msa1065500:intron | 20.0% |
| !! | TCTAAAAAACAAAATTGAAG+AGG | - | chr7_2:59211180-59211199 | Msa1065500:intron | 20.0% |
| !! | TAATTCGATGTATTTATCTT+TGG | + | chr7_2:59211206-59211225 | None:intergenic | 20.0% |
| !! | ACAAAACATTATTATATGCA+GGG | - | chr7_2:59211453-59211472 | Msa1065500:intron | 20.0% |
| !!! | GACTTTTGTGTTTTTTTATA+AGG | - | chr7_2:59211816-59211835 | Msa1065500:intron | 20.0% |
| !!! | TTTTGGCTTTTATTACAAAT+GGG | + | chr7_2:59211944-59211963 | None:intergenic | 20.0% |
| !!! | TTTTTGGCTTTTATTACAAA+TGG | + | chr7_2:59211945-59211964 | None:intergenic | 20.0% |
| !! | AATAAAAGCCAAAAATACAA+TGG | - | chr7_2:59211950-59211969 | Msa1065500:intron | 20.0% |
| !! | ATAAAAGCCAAAAATACAAT+GGG | - | chr7_2:59211951-59211970 | Msa1065500:intron | 20.0% |
| !! | AAACGCAAAAAATAAGTTAA+GGG | + | chr7_2:59212118-59212137 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGCGTTTCATTT+TGG | - | chr7_2:59212123-59212142 | Msa1065500:intron | 20.0% |
| !! | ATTGAGACACATTATAATTA+GGG | + | chr7_2:59212151-59212170 | None:intergenic | 20.0% |
| !! | AATTGAGACACATTATAATT+AGG | + | chr7_2:59212152-59212171 | None:intergenic | 20.0% |
| !! | AATTATAATGTGTCTCAATT+TGG | - | chr7_2:59212152-59212171 | Msa1065500:intron | 20.0% |
| !!! | ACAGATTTTGCAAAAATTAA+TGG | + | chr7_2:59212216-59212235 | None:intergenic | 20.0% |
| !! | AAAAAATAAAATATGGCACT+TGG | + | chr7_2:59212549-59212568 | None:intergenic | 20.0% |
| !!! | AGTGCCATATTTTATTTTTT+TGG | - | chr7_2:59212549-59212568 | Msa1065500:intron | 20.0% |
| !! | TATGAATGTATATCACAAAA+AGG | + | chr7_2:59210568-59210587 | None:intergenic | 20.0% |
| !! | CATATATATAAATTCAATCC+TGG | - | chr7_2:59210584-59210603 | Msa1065500:intron | 20.0% |
| !!! | ATTTGAAGATTTTCAATACA+AGG | - | chr7_2:59210906-59210925 | Msa1065500:intron | 20.0% |
| !!! | TTTTTTTTTTGAATAACGGT+TGG | - | chr7_2:59211087-59211106 | Msa1065500:intron | 20.0% |
| !! | AATTAATGTAGAAGAATTCT+AGG | - | chr7_2:59211126-59211145 | Msa1065500:intron | 20.0% |
| !! | TCTAAAAAACAAAATTGAAG+AGG | - | chr7_2:59211180-59211199 | Msa1065500:intron | 20.0% |
| !! | TAATTCGATGTATTTATCTT+TGG | + | chr7_2:59211206-59211225 | None:intergenic | 20.0% |
| !! | ACAAAACATTATTATATGCA+GGG | - | chr7_2:59211453-59211472 | Msa1065500:intron | 20.0% |
| !!! | GACTTTTGTGTTTTTTTATA+AGG | - | chr7_2:59211816-59211835 | Msa1065500:intron | 20.0% |
| !!! | TTTTGGCTTTTATTACAAAT+GGG | + | chr7_2:59211944-59211963 | None:intergenic | 20.0% |
| !!! | TTTTTGGCTTTTATTACAAA+TGG | + | chr7_2:59211945-59211964 | None:intergenic | 20.0% |
| !! | AATAAAAGCCAAAAATACAA+TGG | - | chr7_2:59211950-59211969 | Msa1065500:intron | 20.0% |
| !! | ATAAAAGCCAAAAATACAAT+GGG | - | chr7_2:59211951-59211970 | Msa1065500:intron | 20.0% |
| !! | AAACGCAAAAAATAAGTTAA+GGG | + | chr7_2:59212118-59212137 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGCGTTTCATTT+TGG | - | chr7_2:59212123-59212142 | Msa1065500:intron | 20.0% |
| !! | ATTGAGACACATTATAATTA+GGG | + | chr7_2:59212151-59212170 | None:intergenic | 20.0% |
| !! | AATTGAGACACATTATAATT+AGG | + | chr7_2:59212152-59212171 | None:intergenic | 20.0% |
| !! | AATTATAATGTGTCTCAATT+TGG | - | chr7_2:59212152-59212171 | Msa1065500:intron | 20.0% |
| !!! | ACAGATTTTGCAAAAATTAA+TGG | + | chr7_2:59212216-59212235 | None:intergenic | 20.0% |
| !! | AAAAAATAAAATATGGCACT+TGG | + | chr7_2:59212549-59212568 | None:intergenic | 20.0% |
| !!! | AGTGCCATATTTTATTTTTT+TGG | - | chr7_2:59212549-59212568 | Msa1065500:intron | 20.0% |
| !! | TGGAAGTTTAGTAGAATTTT+GGG | - | chr7_2:59210440-59210459 | Msa1065500:CDS | 25.0% |
| ! | ATGTATATCACAAAAAGGAA+AGG | + | chr7_2:59210563-59210582 | None:intergenic | 25.0% |
| ! | GCATAATTTATAGGAATCTT+TGG | - | chr7_2:59210610-59210629 | Msa1065500:intron | 25.0% |
| ! | TCTATAACCTTCAAGAAATT+AGG | - | chr7_2:59210661-59210680 | Msa1065500:intron | 25.0% |
| !! | ATTTTCCTTATAATAGTGTC+TGG | + | chr7_2:59210734-59210753 | None:intergenic | 25.0% |
| ! | ATTAAGCATTACTATATGAG+AGG | - | chr7_2:59211031-59211050 | Msa1065500:intron | 25.0% |
| ! | ACTGGAATATTGTTTGTATT+TGG | + | chr7_2:59211239-59211258 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGAGCAATGATTG+AGG | - | chr7_2:59211403-59211422 | Msa1065500:intron | 25.0% |
| ! | GACAAAACATTATTATATGC+AGG | - | chr7_2:59211452-59211471 | Msa1065500:intron | 25.0% |
| ! | CAAAACATTATTATATGCAG+GGG | - | chr7_2:59211454-59211473 | Msa1065500:intron | 25.0% |
| !!! | TGATCTTTTTTTTTTTGGTC+AGG | + | chr7_2:59211545-59211564 | None:intergenic | 25.0% |
| !! | TCATTAAAGAAGACGTATTT+TGG | + | chr7_2:59211737-59211756 | None:intergenic | 25.0% |
| !!! | GCTAGTTGAGATTTTTTTAT+TGG | - | chr7_2:59211773-59211792 | Msa1065500:intron | 25.0% |
| !!! | AGCAATGTACAATTTTTAAG+AGG | + | chr7_2:59211987-59212006 | None:intergenic | 25.0% |
| ! | GAAACGCAAAAAATAAGTTA+AGG | + | chr7_2:59212119-59212138 | None:intergenic | 25.0% |
| ! | TTGAGACACATTATAATTAG+GGG | + | chr7_2:59212150-59212169 | None:intergenic | 25.0% |
| !! | CATTTATGATTTGTGATCAA+TGG | - | chr7_2:59212254-59212273 | Msa1065500:intron | 25.0% |
| !! | TGGAAGTTTAGTAGAATTTT+GGG | - | chr7_2:59210440-59210459 | Msa1065500:CDS | 25.0% |
| ! | ATGTATATCACAAAAAGGAA+AGG | + | chr7_2:59210563-59210582 | None:intergenic | 25.0% |
| ! | GCATAATTTATAGGAATCTT+TGG | - | chr7_2:59210610-59210629 | Msa1065500:intron | 25.0% |
| ! | TCTATAACCTTCAAGAAATT+AGG | - | chr7_2:59210661-59210680 | Msa1065500:intron | 25.0% |
| !! | ATTTTCCTTATAATAGTGTC+TGG | + | chr7_2:59210734-59210753 | None:intergenic | 25.0% |
| ! | ATTAAGCATTACTATATGAG+AGG | - | chr7_2:59211031-59211050 | Msa1065500:intron | 25.0% |
| ! | ACTGGAATATTGTTTGTATT+TGG | + | chr7_2:59211239-59211258 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGAGCAATGATTG+AGG | - | chr7_2:59211403-59211422 | Msa1065500:intron | 25.0% |
| ! | GACAAAACATTATTATATGC+AGG | - | chr7_2:59211452-59211471 | Msa1065500:intron | 25.0% |
| ! | CAAAACATTATTATATGCAG+GGG | - | chr7_2:59211454-59211473 | Msa1065500:intron | 25.0% |
| !!! | TGATCTTTTTTTTTTTGGTC+AGG | + | chr7_2:59211545-59211564 | None:intergenic | 25.0% |
| !! | TCATTAAAGAAGACGTATTT+TGG | + | chr7_2:59211737-59211756 | None:intergenic | 25.0% |
| !!! | GCTAGTTGAGATTTTTTTAT+TGG | - | chr7_2:59211773-59211792 | Msa1065500:intron | 25.0% |
| !!! | AGCAATGTACAATTTTTAAG+AGG | + | chr7_2:59211987-59212006 | None:intergenic | 25.0% |
| ! | GAAACGCAAAAAATAAGTTA+AGG | + | chr7_2:59212119-59212138 | None:intergenic | 25.0% |
| ! | TTGAGACACATTATAATTAG+GGG | + | chr7_2:59212150-59212169 | None:intergenic | 25.0% |
| !! | CATTTATGATTTGTGATCAA+TGG | - | chr7_2:59212254-59212273 | Msa1065500:intron | 25.0% |
| ! | GTGGAAGTTTAGTAGAATTT+TGG | - | chr7_2:59210439-59210458 | Msa1065500:CDS | 30.0% |
| !!! | GTTTAGTAGAATTTTGGGTT+TGG | - | chr7_2:59210445-59210464 | Msa1065500:CDS | 30.0% |
| TCTAAGAAAGAAGATGAGAA+TGG | - | chr7_2:59210476-59210495 | Msa1065500:CDS | 30.0% | |
| !! | TAATCACTAGTAGAAGTGTT+TGG | - | chr7_2:59210514-59210533 | Msa1065500:CDS | 30.0% |
| GTGATATCCTAATTTCTTGA+AGG | + | chr7_2:59210671-59210690 | None:intergenic | 30.0% | |
| AACATCCAGACACTATTATA+AGG | - | chr7_2:59210726-59210745 | Msa1065500:intron | 30.0% | |
| CAAGGATCTAATATACACTA+AGG | - | chr7_2:59210924-59210943 | Msa1065500:intron | 30.0% | |
| TTGTTTGTATTTGGCATTTC+AGG | + | chr7_2:59211230-59211249 | None:intergenic | 30.0% | |
| TACAAACAATATTCCAGTCA+CGG | - | chr7_2:59211241-59211260 | Msa1065500:intron | 30.0% | |
| ACCTTATAAGGTGAATAAGT+GGG | + | chr7_2:59211502-59211521 | None:intergenic | 30.0% | |
| ATAGACGGAAGTAAAGATAA+AGG | + | chr7_2:59212179-59212198 | None:intergenic | 30.0% | |
| GAGATGACTAATTTGATAGA+CGG | + | chr7_2:59212194-59212213 | None:intergenic | 30.0% | |
| CACAAATCATAAATGACATG+TGG | + | chr7_2:59212249-59212268 | None:intergenic | 30.0% | |
| CTGGATTTAAAAAACACACA+TGG | - | chr7_2:59212277-59212296 | Msa1065500:intron | 30.0% | |
| !!! | TAAGATTTTGAGGTTGGAAA+GGG | + | chr7_2:59212516-59212535 | None:intergenic | 30.0% |
| !!! | TTAAGATTTTGAGGTTGGAA+AGG | + | chr7_2:59212517-59212536 | None:intergenic | 30.0% |
| TAAATCCAAAAGTCAAGCTT+GGG | - | chr7_2:59212636-59212655 | Msa1065500:intron | 30.0% | |
| ! | TTTCTACTGTTGAAGAGTTT+TGG | - | chr7_2:59212685-59212704 | Msa1065500:intron | 30.0% |
| ! | GTGGAAGTTTAGTAGAATTT+TGG | - | chr7_2:59210439-59210458 | Msa1065500:CDS | 30.0% |
| !!! | GTTTAGTAGAATTTTGGGTT+TGG | - | chr7_2:59210445-59210464 | Msa1065500:CDS | 30.0% |
| TCTAAGAAAGAAGATGAGAA+TGG | - | chr7_2:59210476-59210495 | Msa1065500:CDS | 30.0% | |
| !! | TAATCACTAGTAGAAGTGTT+TGG | - | chr7_2:59210514-59210533 | Msa1065500:CDS | 30.0% |
| GTGATATCCTAATTTCTTGA+AGG | + | chr7_2:59210671-59210690 | None:intergenic | 30.0% | |
| AACATCCAGACACTATTATA+AGG | - | chr7_2:59210726-59210745 | Msa1065500:intron | 30.0% | |
| CAAGGATCTAATATACACTA+AGG | - | chr7_2:59210924-59210943 | Msa1065500:intron | 30.0% | |
| TTGTTTGTATTTGGCATTTC+AGG | + | chr7_2:59211230-59211249 | None:intergenic | 30.0% | |
| TACAAACAATATTCCAGTCA+CGG | - | chr7_2:59211241-59211260 | Msa1065500:intron | 30.0% | |
| ACCTTATAAGGTGAATAAGT+GGG | + | chr7_2:59211502-59211521 | None:intergenic | 30.0% | |
| ATAGACGGAAGTAAAGATAA+AGG | + | chr7_2:59212179-59212198 | None:intergenic | 30.0% | |
| GAGATGACTAATTTGATAGA+CGG | + | chr7_2:59212194-59212213 | None:intergenic | 30.0% | |
| CACAAATCATAAATGACATG+TGG | + | chr7_2:59212249-59212268 | None:intergenic | 30.0% | |
| CTGGATTTAAAAAACACACA+TGG | - | chr7_2:59212277-59212296 | Msa1065500:intron | 30.0% | |
| !!! | TAAGATTTTGAGGTTGGAAA+GGG | + | chr7_2:59212516-59212535 | None:intergenic | 30.0% |
| !!! | TTAAGATTTTGAGGTTGGAA+AGG | + | chr7_2:59212517-59212536 | None:intergenic | 30.0% |
| TAAATCCAAAAGTCAAGCTT+GGG | - | chr7_2:59212636-59212655 | Msa1065500:intron | 30.0% | |
| ! | TTTCTACTGTTGAAGAGTTT+TGG | - | chr7_2:59212685-59212704 | Msa1065500:intron | 30.0% |
| ATTCTACTAAACTTCCACCA+GGG | + | chr7_2:59210437-59210456 | None:intergenic | 35.0% | |
| AATTCTACTAAACTTCCACC+AGG | + | chr7_2:59210438-59210457 | None:intergenic | 35.0% | |
| AAGGCATAAGCAATAAGTCA+TGG | + | chr7_2:59210544-59210563 | None:intergenic | 35.0% | |
| TCCTGGTGTGCATAATTTAT+AGG | - | chr7_2:59210601-59210620 | Msa1065500:intron | 35.0% | |
| TCCTATAAATTATGCACACC+AGG | + | chr7_2:59210605-59210624 | None:intergenic | 35.0% | |
| !! | TATTAGGTCCCTTTAAGGTT+GGG | + | chr7_2:59210955-59210974 | None:intergenic | 35.0% |
| ! | AGAATTGACCTTGGTGTATT+AGG | + | chr7_2:59210971-59210990 | None:intergenic | 35.0% |
| TACCAACTGAGTTATGATCA+CGG | + | chr7_2:59211431-59211450 | None:intergenic | 35.0% | |
| CCTTATAAGGTGAATAAGTG+GGG | + | chr7_2:59211501-59211520 | None:intergenic | 35.0% | |
| CACCTTATAAGGTGAATAAG+TGG | + | chr7_2:59211503-59211522 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | + | chr7_2:59211514-59211533 | None:intergenic | 35.0% | |
| CAACTAGCACAACATTTGAA+TGG | + | chr7_2:59211761-59211780 | None:intergenic | 35.0% | |
| TTTCATGGACATGATAACAC+TGG | + | chr7_2:59211867-59211886 | None:intergenic | 35.0% | |
| ! | GGCTTTTATTACAAATGGGA+AGG | + | chr7_2:59211940-59211959 | None:intergenic | 35.0% |
| ! | ACCATGTCCCATTGTATTTT+TGG | + | chr7_2:59211961-59211980 | None:intergenic | 35.0% |
| ! | TATGATTTGTGATCAATGGC+TGG | - | chr7_2:59212258-59212277 | Msa1065500:intron | 35.0% |
| GCTGTAGATTGAACATTAGA+GGG | + | chr7_2:59212462-59212481 | None:intergenic | 35.0% | |
| AGCTGTAGATTGAACATTAG+AGG | + | chr7_2:59212463-59212482 | None:intergenic | 35.0% | |
| ! | ATCAGAGGGTTAAGATTTTG+AGG | + | chr7_2:59212526-59212545 | None:intergenic | 35.0% |
| !!! | GACTTTTGGATTTAGCTTGA+GGG | + | chr7_2:59212630-59212649 | None:intergenic | 35.0% |
| !!! | TGACTTTTGGATTTAGCTTG+AGG | + | chr7_2:59212631-59212650 | None:intergenic | 35.0% |
| CTAAATCCAAAAGTCAAGCT+TGG | - | chr7_2:59212635-59212654 | Msa1065500:intron | 35.0% | |
| AAATCCAAAAGTCAAGCTTG+GGG | - | chr7_2:59212637-59212656 | Msa1065500:intron | 35.0% | |
| ATTCTACTAAACTTCCACCA+GGG | + | chr7_2:59210437-59210456 | None:intergenic | 35.0% | |
| AATTCTACTAAACTTCCACC+AGG | + | chr7_2:59210438-59210457 | None:intergenic | 35.0% | |
| AAGGCATAAGCAATAAGTCA+TGG | + | chr7_2:59210544-59210563 | None:intergenic | 35.0% | |
| TCCTGGTGTGCATAATTTAT+AGG | - | chr7_2:59210601-59210620 | Msa1065500:intron | 35.0% | |
| TCCTATAAATTATGCACACC+AGG | + | chr7_2:59210605-59210624 | None:intergenic | 35.0% | |
| !! | TATTAGGTCCCTTTAAGGTT+GGG | + | chr7_2:59210955-59210974 | None:intergenic | 35.0% |
| ! | AGAATTGACCTTGGTGTATT+AGG | + | chr7_2:59210971-59210990 | None:intergenic | 35.0% |
| TACCAACTGAGTTATGATCA+CGG | + | chr7_2:59211431-59211450 | None:intergenic | 35.0% | |
| CCTTATAAGGTGAATAAGTG+GGG | + | chr7_2:59211501-59211520 | None:intergenic | 35.0% | |
| CACCTTATAAGGTGAATAAG+TGG | + | chr7_2:59211503-59211522 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | + | chr7_2:59211514-59211533 | None:intergenic | 35.0% | |
| CAACTAGCACAACATTTGAA+TGG | + | chr7_2:59211761-59211780 | None:intergenic | 35.0% | |
| TTTCATGGACATGATAACAC+TGG | + | chr7_2:59211867-59211886 | None:intergenic | 35.0% | |
| ! | GGCTTTTATTACAAATGGGA+AGG | + | chr7_2:59211940-59211959 | None:intergenic | 35.0% |
| ! | ACCATGTCCCATTGTATTTT+TGG | + | chr7_2:59211961-59211980 | None:intergenic | 35.0% |
| ! | TATGATTTGTGATCAATGGC+TGG | - | chr7_2:59212258-59212277 | Msa1065500:intron | 35.0% |
| GCTGTAGATTGAACATTAGA+GGG | + | chr7_2:59212462-59212481 | None:intergenic | 35.0% | |
| AGCTGTAGATTGAACATTAG+AGG | + | chr7_2:59212463-59212482 | None:intergenic | 35.0% | |
| ! | ATCAGAGGGTTAAGATTTTG+AGG | + | chr7_2:59212526-59212545 | None:intergenic | 35.0% |
| !!! | GACTTTTGGATTTAGCTTGA+GGG | + | chr7_2:59212630-59212649 | None:intergenic | 35.0% |
| !!! | TGACTTTTGGATTTAGCTTG+AGG | + | chr7_2:59212631-59212650 | None:intergenic | 35.0% |
| CTAAATCCAAAAGTCAAGCT+TGG | - | chr7_2:59212635-59212654 | Msa1065500:intron | 35.0% | |
| AAATCCAAAAGTCAAGCTTG+GGG | - | chr7_2:59212637-59212656 | Msa1065500:intron | 35.0% | |
| GAGAATGGTTGCACTTACAA+AGG | - | chr7_2:59210491-59210510 | Msa1065500:CDS | 40.0% | |
| !! | TCACTAGTAGAAGTGTTTGG+TGG | - | chr7_2:59210517-59210536 | Msa1065500:CDS | 40.0% |
| !! | GTATTAGGTCCCTTTAAGGT+TGG | + | chr7_2:59210956-59210975 | None:intergenic | 40.0% |
| TGGTGTATTAGGTCCCTTTA+AGG | + | chr7_2:59210960-59210979 | None:intergenic | 40.0% | |
| TAAAGGGACCTAATACACCA+AGG | - | chr7_2:59210960-59210979 | Msa1065500:intron | 40.0% | |
| TGTTAGAGCAGAATTGACCT+TGG | + | chr7_2:59210980-59210999 | None:intergenic | 40.0% | |
| ATATGAGAGGCAAGTACAAG+TGG | - | chr7_2:59211044-59211063 | Msa1065500:intron | 40.0% | |
| TAACGGTTGGACTTTAGTGT+TGG | - | chr7_2:59211100-59211119 | Msa1065500:intron | 40.0% | |
| CATCAATATCAAACCGTGAC+TGG | + | chr7_2:59211257-59211276 | None:intergenic | 40.0% | |
| CAGTCACGGTTTGATATTGA+TGG | - | chr7_2:59211255-59211274 | Msa1065500:intron | 40.0% | |
| ! | CACGGTTTGATATTGATGGT+AGG | - | chr7_2:59211259-59211278 | Msa1065500:intron | 40.0% |
| ! | TGATATTGATGGTAGGCAGA+AGG | - | chr7_2:59211266-59211285 | Msa1065500:intron | 40.0% |
| ACCAACTGAGTTATGATCAC+GGG | + | chr7_2:59211430-59211449 | None:intergenic | 40.0% | |
| GTGATCATAACTCAGTTGGT+AGG | - | chr7_2:59211430-59211449 | Msa1065500:intron | 40.0% | |
| CCCCACTTATTCACCTTATA+AGG | - | chr7_2:59211498-59211517 | Msa1065500:intron | 40.0% | |
| !! | TTTTTGGTCAGGTAGCTTAG+TGG | + | chr7_2:59211534-59211553 | None:intergenic | 40.0% |
| GCCAAAAATACAATGGGACA+TGG | - | chr7_2:59211957-59211976 | Msa1065500:intron | 40.0% | |
| AAATGAGAGAGTCGACAACT+TGG | + | chr7_2:59212042-59212061 | None:intergenic | 40.0% | |
| AAAACACACATGGCATACAG+TGG | - | chr7_2:59212287-59212306 | Msa1065500:intron | 40.0% | |
| TGTTCAATCTACAGCTTCTC+TGG | - | chr7_2:59212467-59212486 | Msa1065500:intron | 40.0% | |
| GAAAGGGAAGATGTTGAAGA+AGG | + | chr7_2:59212500-59212519 | None:intergenic | 40.0% | |
| !!! | GAGGGTTAAGATTTTGAGGT+TGG | + | chr7_2:59212522-59212541 | None:intergenic | 40.0% |
| AATATGGCACTTGGATCAGA+GGG | + | chr7_2:59212540-59212559 | None:intergenic | 40.0% | |
| AAATATGGCACTTGGATCAG+AGG | + | chr7_2:59212541-59212560 | None:intergenic | 40.0% | |
| AAGATAGCCACGAGAATTCT+TGG | - | chr7_2:59212587-59212606 | Msa1065500:intron | 40.0% | |
| AGAAAGTCCAAGAATTCTCG+TGG | + | chr7_2:59212597-59212616 | None:intergenic | 40.0% | |
| ACGAGAATTCTTGGACTTTC+TGG | - | chr7_2:59212596-59212615 | Msa1065500:intron | 40.0% | |
| CATTCACAATCCTAGCAAGT+TGG | - | chr7_2:59212722-59212741 | Msa1065500:intron | 40.0% | |
| ! | CTGTTGGAGCTGATTTCAAT+TGG | - | chr7_2:59212745-59212764 | Msa1065500:intron | 40.0% |
| ! | GCTGATTTCAATTGGACTGT+TGG | - | chr7_2:59212753-59212772 | Msa1065500:intron | 40.0% |
| ! | CTAGTATCAGATTTTCCCCA+AGG | + | chr7_2:59212806-59212825 | None:intergenic | 40.0% |
| TAGCTGGTTGTATACGTTGT+TGG | - | chr7_2:59212823-59212842 | Msa1065500:CDS | 40.0% | |
| GAGAATGGTTGCACTTACAA+AGG | - | chr7_2:59210491-59210510 | Msa1065500:CDS | 40.0% | |
| !! | TCACTAGTAGAAGTGTTTGG+TGG | - | chr7_2:59210517-59210536 | Msa1065500:CDS | 40.0% |
| !! | GTATTAGGTCCCTTTAAGGT+TGG | + | chr7_2:59210956-59210975 | None:intergenic | 40.0% |
| TGGTGTATTAGGTCCCTTTA+AGG | + | chr7_2:59210960-59210979 | None:intergenic | 40.0% | |
| TAAAGGGACCTAATACACCA+AGG | - | chr7_2:59210960-59210979 | Msa1065500:intron | 40.0% | |
| TGTTAGAGCAGAATTGACCT+TGG | + | chr7_2:59210980-59210999 | None:intergenic | 40.0% | |
| ATATGAGAGGCAAGTACAAG+TGG | - | chr7_2:59211044-59211063 | Msa1065500:intron | 40.0% | |
| TAACGGTTGGACTTTAGTGT+TGG | - | chr7_2:59211100-59211119 | Msa1065500:intron | 40.0% | |
| CATCAATATCAAACCGTGAC+TGG | + | chr7_2:59211257-59211276 | None:intergenic | 40.0% | |
| CAGTCACGGTTTGATATTGA+TGG | - | chr7_2:59211255-59211274 | Msa1065500:intron | 40.0% | |
| ! | CACGGTTTGATATTGATGGT+AGG | - | chr7_2:59211259-59211278 | Msa1065500:intron | 40.0% |
| ! | TGATATTGATGGTAGGCAGA+AGG | - | chr7_2:59211266-59211285 | Msa1065500:intron | 40.0% |
| ACCAACTGAGTTATGATCAC+GGG | + | chr7_2:59211430-59211449 | None:intergenic | 40.0% | |
| GTGATCATAACTCAGTTGGT+AGG | - | chr7_2:59211430-59211449 | Msa1065500:intron | 40.0% | |
| CCCCACTTATTCACCTTATA+AGG | - | chr7_2:59211498-59211517 | Msa1065500:intron | 40.0% | |
| !! | TTTTTGGTCAGGTAGCTTAG+TGG | + | chr7_2:59211534-59211553 | None:intergenic | 40.0% |
| GCCAAAAATACAATGGGACA+TGG | - | chr7_2:59211957-59211976 | Msa1065500:intron | 40.0% | |
| AAATGAGAGAGTCGACAACT+TGG | + | chr7_2:59212042-59212061 | None:intergenic | 40.0% | |
| AAAACACACATGGCATACAG+TGG | - | chr7_2:59212287-59212306 | Msa1065500:intron | 40.0% | |
| TGTTCAATCTACAGCTTCTC+TGG | - | chr7_2:59212467-59212486 | Msa1065500:intron | 40.0% | |
| GAAAGGGAAGATGTTGAAGA+AGG | + | chr7_2:59212500-59212519 | None:intergenic | 40.0% | |
| !!! | GAGGGTTAAGATTTTGAGGT+TGG | + | chr7_2:59212522-59212541 | None:intergenic | 40.0% |
| AATATGGCACTTGGATCAGA+GGG | + | chr7_2:59212540-59212559 | None:intergenic | 40.0% | |
| AAATATGGCACTTGGATCAG+AGG | + | chr7_2:59212541-59212560 | None:intergenic | 40.0% | |
| AAGATAGCCACGAGAATTCT+TGG | - | chr7_2:59212587-59212606 | Msa1065500:intron | 40.0% | |
| AGAAAGTCCAAGAATTCTCG+TGG | + | chr7_2:59212597-59212616 | None:intergenic | 40.0% | |
| ACGAGAATTCTTGGACTTTC+TGG | - | chr7_2:59212596-59212615 | Msa1065500:intron | 40.0% | |
| CATTCACAATCCTAGCAAGT+TGG | - | chr7_2:59212722-59212741 | Msa1065500:intron | 40.0% | |
| ! | CTGTTGGAGCTGATTTCAAT+TGG | - | chr7_2:59212745-59212764 | Msa1065500:intron | 40.0% |
| ! | GCTGATTTCAATTGGACTGT+TGG | - | chr7_2:59212753-59212772 | Msa1065500:intron | 40.0% |
| ! | CTAGTATCAGATTTTCCCCA+AGG | + | chr7_2:59212806-59212825 | None:intergenic | 40.0% |
| TAGCTGGTTGTATACGTTGT+TGG | - | chr7_2:59212823-59212842 | Msa1065500:CDS | 40.0% | |
| AAGGTCCATCCCAACCTTAA+AGG | - | chr7_2:59210943-59210962 | Msa1065500:intron | 45.0% | |
| AGGTCCATCCCAACCTTAAA+GGG | - | chr7_2:59210944-59210963 | Msa1065500:intron | 45.0% | |
| TCCCGTGATCATAACTCAGT+TGG | - | chr7_2:59211426-59211445 | Msa1065500:intron | 45.0% | |
| GAGAAGAAGAAGATGCAGCA+GGG | + | chr7_2:59212397-59212416 | None:intergenic | 45.0% | |
| TGAGAAGAAGAAGATGCAGC+AGG | + | chr7_2:59212398-59212417 | None:intergenic | 45.0% | |
| CAGCTGCAGATTGAAGAAGA+GGG | + | chr7_2:59212431-59212450 | None:intergenic | 45.0% | |
| ! | ACTACCCCAAGCTTGACTTT+TGG | + | chr7_2:59212644-59212663 | None:intergenic | 45.0% |
| ! | AATCCTAGCAAGTTGGCTGT+TGG | - | chr7_2:59212729-59212748 | Msa1065500:intron | 45.0% |
| TTCAATTGGACTGTTGGAGC+TGG | - | chr7_2:59212759-59212778 | Msa1065500:CDS | 45.0% | |
| !! | AATGGACTGTGCGATTTCCT+TGG | - | chr7_2:59212786-59212805 | Msa1065500:CDS | 45.0% |
| ! | ATGGACTGTGCGATTTCCTT+GGG | - | chr7_2:59212787-59212806 | Msa1065500:CDS | 45.0% |
| GGGGAAAATCTGATACTAGC+TGG | - | chr7_2:59212807-59212826 | Msa1065500:CDS | 45.0% | |
| AAGGTCCATCCCAACCTTAA+AGG | - | chr7_2:59210943-59210962 | Msa1065500:intron | 45.0% | |
| AGGTCCATCCCAACCTTAAA+GGG | - | chr7_2:59210944-59210963 | Msa1065500:intron | 45.0% | |
| TCCCGTGATCATAACTCAGT+TGG | - | chr7_2:59211426-59211445 | Msa1065500:intron | 45.0% | |
| GAGAAGAAGAAGATGCAGCA+GGG | + | chr7_2:59212397-59212416 | None:intergenic | 45.0% | |
| TGAGAAGAAGAAGATGCAGC+AGG | + | chr7_2:59212398-59212417 | None:intergenic | 45.0% | |
| CAGCTGCAGATTGAAGAAGA+GGG | + | chr7_2:59212431-59212450 | None:intergenic | 45.0% | |
| ! | ACTACCCCAAGCTTGACTTT+TGG | + | chr7_2:59212644-59212663 | None:intergenic | 45.0% |
| ! | AATCCTAGCAAGTTGGCTGT+TGG | - | chr7_2:59212729-59212748 | Msa1065500:intron | 45.0% |
| TTCAATTGGACTGTTGGAGC+TGG | - | chr7_2:59212759-59212778 | Msa1065500:CDS | 45.0% | |
| !! | AATGGACTGTGCGATTTCCT+TGG | - | chr7_2:59212786-59212805 | Msa1065500:CDS | 45.0% |
| ! | ATGGACTGTGCGATTTCCTT+GGG | - | chr7_2:59212787-59212806 | Msa1065500:CDS | 45.0% |
| GGGGAAAATCTGATACTAGC+TGG | - | chr7_2:59212807-59212826 | Msa1065500:CDS | 45.0% | |
| !! | TATTTATTAAATAATGTATA+TGG | - | chr7_2:59210769-59210788 | Msa1065500:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTGAATAA+CGG | - | chr7_2:59211083-59211102 | Msa1065500:intron | 5.0% |
| !!! | ATAAAAAAAAATATTTTTCA+TGG | + | chr7_2:59211882-59211901 | None:intergenic | 5.0% |
| !!! | TCTTATTTTATATTTAATTT+GGG | - | chr7_2:59212075-59212094 | Msa1065500:intron | 5.0% |
| !! | TATTTATTAAATAATGTATA+TGG | - | chr7_2:59210769-59210788 | Msa1065500:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTGAATAA+CGG | - | chr7_2:59211083-59211102 | Msa1065500:intron | 5.0% |
| !!! | ATAAAAAAAAATATTTTTCA+TGG | + | chr7_2:59211882-59211901 | None:intergenic | 5.0% |
| !!! | TCTTATTTTATATTTAATTT+GGG | - | chr7_2:59212075-59212094 | Msa1065500:intron | 5.0% |
| !! | AGGTCCCTTTAAGGTTGGGA+TGG | + | chr7_2:59210951-59210970 | None:intergenic | 50.0% |
| GAGAGGCAAGTACAAGTGGT+TGG | - | chr7_2:59211048-59211067 | Msa1065500:intron | 50.0% | |
| GGTGTCCAGGGTTCAAACTT+CGG | + | chr7_2:59211480-59211499 | None:intergenic | 50.0% | |
| ! | GTGAATAAGTGGGGTGTCCA+GGG | + | chr7_2:59211492-59211511 | None:intergenic | 50.0% |
| TTGGCATCTCTGACGTTGCT+TGG | + | chr7_2:59211718-59211737 | None:intergenic | 50.0% | |
| GCAGCTGCAGATTGAAGAAG+AGG | + | chr7_2:59212432-59212451 | None:intergenic | 50.0% | |
| AATTGGACTGTTGGAGCTGG+TGG | - | chr7_2:59212762-59212781 | Msa1065500:CDS | 50.0% | |
| ACTGTTGGAGCTGGTGGAAA+TGG | - | chr7_2:59212768-59212787 | Msa1065500:CDS | 50.0% | |
| TGGACTGTGCGATTTCCTTG+GGG | - | chr7_2:59212788-59212807 | Msa1065500:CDS | 50.0% | |
| !! | AGGTCCCTTTAAGGTTGGGA+TGG | + | chr7_2:59210951-59210970 | None:intergenic | 50.0% |
| GAGAGGCAAGTACAAGTGGT+TGG | - | chr7_2:59211048-59211067 | Msa1065500:intron | 50.0% | |
| GGTGTCCAGGGTTCAAACTT+CGG | + | chr7_2:59211480-59211499 | None:intergenic | 50.0% | |
| ! | GTGAATAAGTGGGGTGTCCA+GGG | + | chr7_2:59211492-59211511 | None:intergenic | 50.0% |
| TTGGCATCTCTGACGTTGCT+TGG | + | chr7_2:59211718-59211737 | None:intergenic | 50.0% | |
| GCAGCTGCAGATTGAAGAAG+AGG | + | chr7_2:59212432-59212451 | None:intergenic | 50.0% | |
| AATTGGACTGTTGGAGCTGG+TGG | - | chr7_2:59212762-59212781 | Msa1065500:CDS | 50.0% | |
| ACTGTTGGAGCTGGTGGAAA+TGG | - | chr7_2:59212768-59212787 | Msa1065500:CDS | 50.0% | |
| TGGACTGTGCGATTTCCTTG+GGG | - | chr7_2:59212788-59212807 | Msa1065500:CDS | 50.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+AGG | + | chr7_2:59211493-59211512 | None:intergenic | 55.0% |
| CTCTGACGTTGCTTGGTTGC+AGG | + | chr7_2:59211711-59211730 | None:intergenic | 55.0% | |
| ! | GCTCCAACAGCCAACTTGCT+AGG | + | chr7_2:59212735-59212754 | None:intergenic | 55.0% |
| ! | GGTGAATAAGTGGGGTGTCC+AGG | + | chr7_2:59211493-59211512 | None:intergenic | 55.0% |
| CTCTGACGTTGCTTGGTTGC+AGG | + | chr7_2:59211711-59211730 | None:intergenic | 55.0% | |
| ! | GCTCCAACAGCCAACTTGCT+AGG | + | chr7_2:59212735-59212754 | None:intergenic | 55.0% |
| ATGGGAAGTGGGTATGGCCC+TGG | - | chr7_2:59210417-59210436 | Msa1065500:CDS | 60.0% | |
| AGGGGCCGAAGTTTGAACCC+TGG | - | chr7_2:59211472-59211491 | Msa1065500:intron | 60.0% | |
| ATGGGAAGTGGGTATGGCCC+TGG | - | chr7_2:59210417-59210436 | Msa1065500:CDS | 60.0% | |
| AGGGGCCGAAGTTTGAACCC+TGG | - | chr7_2:59211472-59211491 | Msa1065500:intron | 60.0% | |
| GGAAGTGGGTATGGCCCTGG+TGG | - | chr7_2:59210420-59210439 | Msa1065500:CDS | 65.0% | |
| GGAAGTGGGTATGGCCCTGG+TGG | - | chr7_2:59210420-59210439 | Msa1065500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 59210417 | 59212851 | 59210417 | ID=Msa1065500;Name=Msa1065500 |
| chr7_2 | mRNA | 59210417 | 59212851 | 59210417 | ID=Msa1065500-mRNA-1;Parent=Msa1065500;Name=Msa1065500-mRNA-1;_AED=0.46;_eAED=0.77;_QI=0|0|0|0.33|1|1|3|0|84 |
| chr7_2 | exon | 59212756 | 59212851 | 59212756 | ID=Msa1065500-mRNA-1:exon:11377;Parent=Msa1065500-mRNA-1 |
| chr7_2 | exon | 59211981 | 59211987 | 59211981 | ID=Msa1065500-mRNA-1:exon:11376;Parent=Msa1065500-mRNA-1 |
| chr7_2 | exon | 59210417 | 59210568 | 59210417 | ID=Msa1065500-mRNA-1:exon:11375;Parent=Msa1065500-mRNA-1 |
| chr7_2 | CDS | 59212756 | 59212851 | 59212756 | ID=Msa1065500-mRNA-1:cds;Parent=Msa1065500-mRNA-1 |
| chr7_2 | CDS | 59211981 | 59211987 | 59211981 | ID=Msa1065500-mRNA-1:cds;Parent=Msa1065500-mRNA-1 |
| chr7_2 | CDS | 59210417 | 59210568 | 59210417 | ID=Msa1065500-mRNA-1:cds;Parent=Msa1065500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
