Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066630 | XP_003623892.1 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.17e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066630 | sp|O80839|PLI2A_ARATH | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.97e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066630 | G7L3J0 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 5.59e-152 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1066630 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066630 | Msa1155400 | 0.925114 | 2.841428e-90 | -8.615850e-47 |
| Msa1066630 | Msa1155490 | 0.901200 | 3.408515e-78 | -8.615850e-47 |
| Msa1066630 | Msa1155870 | 0.942635 | 5.063867e-102 | -8.615850e-47 |
| Msa1066630 | Msa1305370 | 0.932108 | 1.395502e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066630 | MtrunA17_Chr7g0247111 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.08e-155 | 429 |
| Msa1066630 | MtrunA17_Chr8g0349391 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 8.71e-111 | 315 |
| Msa1066630 | MtrunA17_Chr3g0113051 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 4.84e-86 | 252 |
| Msa1066630 | MtrunA17_Chr8g0386501 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 9.21e-74 | 222 |
| Msa1066630 | MtrunA17_Chr1g0152431 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.43e-60 | 188 |
| Msa1066630 | MtrunA17_Chr4g0059371 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.00e-56 | 176 |
| Msa1066630 | MtrunA17_Chr4g0059371 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 5.72e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066630 | AT2G45800.1 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 4.03e-106 | 305 |
| Msa1066630 | AT1G01780.1 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.97e-106 | 303 |
| Msa1066630 | AT3G61230.1 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.83e-104 | 300 |
| Msa1066630 | AT2G39900.1 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.19e-90 | 263 |
| Msa1066630 | AT3G55770.3 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1066630 | AT3G55770.5 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1066630 | AT3G55770.2 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1066630 | AT3G55770.1 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1066630 | AT3G55770.7 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.34e-81 | 242 |
| Msa1066630 | AT2G45800.2 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 5.19e-75 | 225 |
| Msa1066630 | AT2G45800.2 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.80e-22 | 89.7 |
| Msa1066630 | AT1G10200.1 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.17e-61 | 190 |
| Msa1066630 | AT3G55770.4 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.77e-56 | 175 |
| Msa1066630 | AT3G55770.4 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.98e-23 | 90.5 |
| Msa1066630 | AT3G55770.6 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 2.04e-53 | 168 |
| Msa1066630 | AT3G55770.6 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.29e-23 | 90.9 |
| Msa1066630 | AT1G10200.2 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.94e-40 | 134 |
| Msa1066630 | AT1G10200.2 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.24e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7_2:+60705427 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7_2:+60704201 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7_2:+60705428 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7_2:+60704234 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7_2:-60705206 | Msa1066630:intron |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7_2:-60704360 | Msa1066630:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7_2:+60705442 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7_2:-60704202 | Msa1066630:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7_2:-60704413 | Msa1066630:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7_2:+60704240 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7_2:-60704860 | Msa1066630:intron |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7_2:+60704228 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7_2:+60704334 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7_2:-60706037 | Msa1066630:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7_2:-60705396 | Msa1066630:intron |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7_2:-60704445 | Msa1066630:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 7_2:+60704918 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7_2:-60704402 | Msa1066630:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7_2:-60705472 | Msa1066630:CDS |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7_2:-60705993 | Msa1066630:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7_2:+60704237 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7_2:-60704439 | Msa1066630:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7_2:+60704356 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7_2:+60704370 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7_2:-60704441 | Msa1066630:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7_2:-60704440 | Msa1066630:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7_2:+60705429 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 7_2:+60704919 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7_2:-60706103 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7_2:-60705981 | Msa1066630:intron |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7_2:+60704245 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7_2:-60706059 | Msa1066630:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7_2:-60704238 | Msa1066630:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7_2:-60704232 | Msa1066630:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 7_2:+60704906 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7_2:-60705992 | Msa1066630:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7_2:-60705468 | Msa1066630:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7_2:-60704399 | Msa1066630:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 7_2:-60704913 | Msa1066630:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7_2:-60706083 | Msa1066630:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7_2:-60704184 | Msa1066630:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7_2:-60704208 | Msa1066630:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7_2:+60704373 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7_2:+60704409 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr7_2:60704671-60704690 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr7_2:60705250-60705269 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr7_2:60705568-60705587 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr7_2:60704671-60704690 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr7_2:60705250-60705269 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr7_2:60705568-60705587 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr7_2:60704430-60704449 | Msa1066630:CDS | 15.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr7_2:60704430-60704449 | Msa1066630:CDS | 15.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr7_2:60704450-60704469 | Msa1066630:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr7_2:60704459-60704478 | Msa1066630:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr7_2:60704664-60704683 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr7_2:60704930-60704949 | Msa1066630:CDS | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr7_2:60705011-60705030 | Msa1066630:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr7_2:60705100-60705119 | None:intergenic | 20.0% |
| !!! | GCAGCAAATTTTTATATTAT+CGG | - | chr7_2:60705151-60705170 | Msa1066630:intron | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr7_2:60705224-60705243 | Msa1066630:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr7_2:60704450-60704469 | Msa1066630:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr7_2:60704459-60704478 | Msa1066630:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr7_2:60704664-60704683 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr7_2:60704930-60704949 | Msa1066630:CDS | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr7_2:60705011-60705030 | Msa1066630:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr7_2:60705100-60705119 | None:intergenic | 20.0% |
| !!! | GCAGCAAATTTTTATATTAT+CGG | - | chr7_2:60705151-60705170 | Msa1066630:intron | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr7_2:60705224-60705243 | Msa1066630:intron | 20.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr7_2:60704257-60704276 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr7_2:60704262-60704281 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr7_2:60704353-60704372 | Msa1066630:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr7_2:60704482-60704501 | Msa1066630:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr7_2:60704838-60704857 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr7_2:60704839-60704858 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr7_2:60705022-60705041 | Msa1066630:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr7_2:60705105-60705124 | Msa1066630:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr7_2:60705227-60705246 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr7_2:60705279-60705298 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr7_2:60705495-60705514 | None:intergenic | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr7_2:60704257-60704276 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr7_2:60704262-60704281 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr7_2:60704353-60704372 | Msa1066630:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr7_2:60704482-60704501 | Msa1066630:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr7_2:60704838-60704857 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr7_2:60704839-60704858 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr7_2:60705022-60705041 | Msa1066630:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr7_2:60705105-60705124 | Msa1066630:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr7_2:60705227-60705246 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr7_2:60705279-60705298 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr7_2:60705495-60705514 | None:intergenic | 25.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr7_2:60704227-60704246 | Msa1066630:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr7_2:60704481-60704500 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr7_2:60704487-60704506 | Msa1066630:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr7_2:60704513-60704532 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr7_2:60704751-60704770 | Msa1066630:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr7_2:60704840-60704859 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr7_2:60704837-60704856 | Msa1066630:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr7_2:60704868-60704887 | Msa1066630:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr7_2:60704984-60705003 | Msa1066630:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr7_2:60705058-60705077 | Msa1066630:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr7_2:60705096-60705115 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr7_2:60705398-60705417 | Msa1066630:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr7_2:60705404-60705423 | Msa1066630:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr7_2:60705417-60705436 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr7_2:60705528-60705547 | Msa1066630:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr7_2:60705542-60705561 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr7_2:60705592-60705611 | Msa1066630:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr7_2:60705593-60705612 | Msa1066630:intron | 30.0% | |
| !!! | TCAACGCTCTTTATTTTTTG+TGG | - | chr7_2:60705639-60705658 | Msa1066630:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr7_2:60705681-60705700 | Msa1066630:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr7_2:60705689-60705708 | Msa1066630:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr7_2:60705690-60705709 | Msa1066630:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr7_2:60705691-60705710 | Msa1066630:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr7_2:60705819-60705838 | Msa1066630:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr7_2:60705824-60705843 | Msa1066630:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr7_2:60705945-60705964 | Msa1066630:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr7_2:60704227-60704246 | Msa1066630:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr7_2:60704481-60704500 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr7_2:60704487-60704506 | Msa1066630:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr7_2:60704513-60704532 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr7_2:60704751-60704770 | Msa1066630:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr7_2:60704840-60704859 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr7_2:60704837-60704856 | Msa1066630:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr7_2:60704868-60704887 | Msa1066630:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr7_2:60704984-60705003 | Msa1066630:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr7_2:60705058-60705077 | Msa1066630:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr7_2:60705096-60705115 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr7_2:60705398-60705417 | Msa1066630:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr7_2:60705404-60705423 | Msa1066630:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr7_2:60705417-60705436 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr7_2:60705528-60705547 | Msa1066630:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr7_2:60705542-60705561 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr7_2:60705592-60705611 | Msa1066630:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr7_2:60705593-60705612 | Msa1066630:intron | 30.0% | |
| !!! | TCAACGCTCTTTATTTTTTG+TGG | - | chr7_2:60705639-60705658 | Msa1066630:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr7_2:60705681-60705700 | Msa1066630:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr7_2:60705689-60705708 | Msa1066630:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr7_2:60705690-60705709 | Msa1066630:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr7_2:60705691-60705710 | Msa1066630:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr7_2:60705819-60705838 | Msa1066630:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr7_2:60705824-60705843 | Msa1066630:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr7_2:60705945-60705964 | Msa1066630:intron | 30.0% |
| AGGAACTCTTGATAAATGCA+AGG | - | chr7_2:60704181-60704200 | Msa1066630:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr7_2:60704205-60704224 | Msa1066630:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr7_2:60704272-60704291 | Msa1066630:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr7_2:60704489-60704508 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr7_2:60704486-60704505 | Msa1066630:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr7_2:60704564-60704583 | Msa1066630:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr7_2:60704565-60704584 | Msa1066630:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr7_2:60704750-60704769 | Msa1066630:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr7_2:60704766-60704785 | Msa1066630:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr7_2:60704844-60704863 | Msa1066630:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr7_2:60705319-60705338 | Msa1066630:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr7_2:60705361-60705380 | None:intergenic | 35.0% | |
| !! | TAAAGAGCGTTGATAGTGAA+TGG | + | chr7_2:60705632-60705651 | None:intergenic | 35.0% |
| ACATTGCGTAATTTATGCAG+GGG | + | chr7_2:60705739-60705758 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr7_2:60705740-60705759 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr7_2:60705741-60705760 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr7_2:60705779-60705798 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr7_2:60705823-60705842 | Msa1066630:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr7_2:60705825-60705844 | Msa1066630:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr7_2:60705933-60705952 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr7_2:60706056-60706075 | Msa1066630:CDS | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | - | chr7_2:60704181-60704200 | Msa1066630:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr7_2:60704205-60704224 | Msa1066630:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr7_2:60704272-60704291 | Msa1066630:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr7_2:60704489-60704508 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr7_2:60704486-60704505 | Msa1066630:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr7_2:60704564-60704583 | Msa1066630:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr7_2:60704565-60704584 | Msa1066630:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr7_2:60704750-60704769 | Msa1066630:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr7_2:60704766-60704785 | Msa1066630:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr7_2:60704844-60704863 | Msa1066630:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr7_2:60705319-60705338 | Msa1066630:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr7_2:60705361-60705380 | None:intergenic | 35.0% | |
| !! | TAAAGAGCGTTGATAGTGAA+TGG | + | chr7_2:60705632-60705651 | None:intergenic | 35.0% |
| ACATTGCGTAATTTATGCAG+GGG | + | chr7_2:60705739-60705758 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr7_2:60705740-60705759 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr7_2:60705741-60705760 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr7_2:60705779-60705798 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr7_2:60705823-60705842 | Msa1066630:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr7_2:60705825-60705844 | Msa1066630:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr7_2:60705933-60705952 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr7_2:60706056-60706075 | Msa1066630:CDS | 35.0% | |
| CTTAAAATGCACTCACTGCA+AGG | - | chr7_2:60704271-60704290 | Msa1066630:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr7_2:60704283-60704302 | Msa1066630:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr7_2:60704792-60704811 | Msa1066630:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr7_2:60704796-60704815 | Msa1066630:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr7_2:60705348-60705367 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr7_2:60705851-60705870 | Msa1066630:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr7_2:60705894-60705913 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr7_2:60705897-60705916 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr7_2:60705952-60705971 | Msa1066630:intron | 40.0% |
| CTTAAAATGCACTCACTGCA+AGG | - | chr7_2:60704271-60704290 | Msa1066630:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr7_2:60704283-60704302 | Msa1066630:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr7_2:60704792-60704811 | Msa1066630:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr7_2:60704796-60704815 | Msa1066630:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr7_2:60705348-60705367 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr7_2:60705851-60705870 | Msa1066630:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr7_2:60705894-60705913 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr7_2:60705897-60705916 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr7_2:60705952-60705971 | Msa1066630:intron | 40.0% |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr7_2:60704498-60704517 | Msa1066630:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr7_2:60704825-60704844 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr7_2:60705349-60705368 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr7_2:60705351-60705370 | Msa1066630:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr7_2:60705673-60705692 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr7_2:60705732-60705751 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr7_2:60705733-60705752 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr7_2:60705858-60705877 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr7_2:60705862-60705881 | Msa1066630:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr7_2:60705904-60705923 | Msa1066630:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr7_2:60706062-60706081 | Msa1066630:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr7_2:60706080-60706099 | Msa1066630:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr7_2:60704498-60704517 | Msa1066630:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr7_2:60704825-60704844 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr7_2:60705349-60705368 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr7_2:60705351-60705370 | Msa1066630:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr7_2:60705673-60705692 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr7_2:60705732-60705751 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr7_2:60705733-60705752 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr7_2:60705858-60705877 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr7_2:60705862-60705881 | Msa1066630:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr7_2:60705904-60705923 | Msa1066630:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr7_2:60706062-60706081 | Msa1066630:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr7_2:60706080-60706099 | Msa1066630:CDS | 45.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr7_2:60705187-60705206 | Msa1066630:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr7_2:60705195-60705214 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr7_2:60705330-60705349 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr7_2:60705659-60705678 | Msa1066630:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr7_2:60705698-60705717 | Msa1066630:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr7_2:60705699-60705718 | Msa1066630:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr7_2:60705734-60705753 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr7_2:60705751-60705770 | Msa1066630:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr7_2:60705752-60705771 | Msa1066630:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr7_2:60705753-60705772 | Msa1066630:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr7_2:60705865-60705884 | Msa1066630:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr7_2:60705911-60705930 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr7_2:60706033-60706052 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr7_2:60706032-60706051 | Msa1066630:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr7_2:60706066-60706085 | None:intergenic | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr7_2:60705187-60705206 | Msa1066630:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr7_2:60705195-60705214 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr7_2:60705330-60705349 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr7_2:60705659-60705678 | Msa1066630:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr7_2:60705698-60705717 | Msa1066630:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr7_2:60705699-60705718 | Msa1066630:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr7_2:60705734-60705753 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr7_2:60705751-60705770 | Msa1066630:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr7_2:60705752-60705771 | Msa1066630:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr7_2:60705753-60705772 | Msa1066630:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr7_2:60705865-60705884 | Msa1066630:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr7_2:60705911-60705930 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr7_2:60706033-60706052 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr7_2:60706032-60706051 | Msa1066630:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr7_2:60706066-60706085 | None:intergenic | 50.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr7_2:60705198-60705217 | Msa1066630:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr7_2:60705700-60705719 | Msa1066630:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr7_2:60706027-60706046 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr7_2:60706026-60706045 | Msa1066630:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr7_2:60706030-60706049 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr7_2:60706039-60706058 | None:intergenic | 55.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr7_2:60705198-60705217 | Msa1066630:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr7_2:60705700-60705719 | Msa1066630:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr7_2:60706027-60706046 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr7_2:60706026-60706045 | Msa1066630:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr7_2:60706030-60706049 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr7_2:60706039-60706058 | None:intergenic | 55.0% | |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr7_2:60706022-60706041 | None:intergenic | 60.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr7_2:60706022-60706041 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 60704170 | 60706116 | 60704170 | ID=Msa1066630;Name=Msa1066630 |
| chr7_2 | mRNA | 60704170 | 60706116 | 60704170 | ID=Msa1066630-mRNA-1;Parent=Msa1066630;Name=Msa1066630-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|212 |
| chr7_2 | exon | 60705982 | 60706116 | 60705982 | ID=Msa1066630-mRNA-1:exon:12023;Parent=Msa1066630-mRNA-1 |
| chr7_2 | exon | 60705397 | 60705493 | 60705397 | ID=Msa1066630-mRNA-1:exon:12022;Parent=Msa1066630-mRNA-1 |
| chr7_2 | exon | 60705207 | 60705238 | 60705207 | ID=Msa1066630-mRNA-1:exon:12021;Parent=Msa1066630-mRNA-1 |
| chr7_2 | exon | 60704861 | 60704950 | 60704861 | ID=Msa1066630-mRNA-1:exon:12020;Parent=Msa1066630-mRNA-1 |
| chr7_2 | exon | 60704170 | 60704454 | 60704170 | ID=Msa1066630-mRNA-1:exon:12019;Parent=Msa1066630-mRNA-1 |
| chr7_2 | CDS | 60705982 | 60706116 | 60705982 | ID=Msa1066630-mRNA-1:cds;Parent=Msa1066630-mRNA-1 |
| chr7_2 | CDS | 60705397 | 60705493 | 60705397 | ID=Msa1066630-mRNA-1:cds;Parent=Msa1066630-mRNA-1 |
| chr7_2 | CDS | 60705207 | 60705238 | 60705207 | ID=Msa1066630-mRNA-1:cds;Parent=Msa1066630-mRNA-1 |
| chr7_2 | CDS | 60704861 | 60704950 | 60704861 | ID=Msa1066630-mRNA-1:cds;Parent=Msa1066630-mRNA-1 |
| chr7_2 | CDS | 60704170 | 60704454 | 60704170 | ID=Msa1066630-mRNA-1:cds;Parent=Msa1066630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
