Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155870 | XP_003623892.1 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.17e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155870 | sp|O80839|PLI2A_ARATH | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.97e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155870 | G7L3J0 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 5.59e-152 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1155870 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066630 | Msa1155870 | 0.942635 | 5.063867e-102 | -8.615850e-47 |
| Msa1155400 | Msa1155870 | 0.966300 | 9.762290e-126 | -8.615850e-47 |
| Msa1155490 | Msa1155870 | 0.919977 | 2.289479e-87 | -8.615850e-47 |
| Msa1155870 | Msa1305370 | 0.971613 | 1.933082e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155870 | MtrunA17_Chr7g0247111 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.08e-155 | 429 |
| Msa1155870 | MtrunA17_Chr8g0349391 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 8.71e-111 | 315 |
| Msa1155870 | MtrunA17_Chr3g0113051 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 4.84e-86 | 252 |
| Msa1155870 | MtrunA17_Chr8g0386501 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 9.21e-74 | 222 |
| Msa1155870 | MtrunA17_Chr1g0152431 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.43e-60 | 188 |
| Msa1155870 | MtrunA17_Chr4g0059371 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.00e-56 | 176 |
| Msa1155870 | MtrunA17_Chr4g0059371 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 5.72e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155870 | AT2G45800.1 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 4.03e-106 | 305 |
| Msa1155870 | AT1G01780.1 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.97e-106 | 303 |
| Msa1155870 | AT3G61230.1 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.83e-104 | 300 |
| Msa1155870 | AT2G39900.1 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.19e-90 | 263 |
| Msa1155870 | AT3G55770.3 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155870 | AT3G55770.5 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155870 | AT3G55770.2 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155870 | AT3G55770.1 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155870 | AT3G55770.7 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.34e-81 | 242 |
| Msa1155870 | AT2G45800.2 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 5.19e-75 | 225 |
| Msa1155870 | AT2G45800.2 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.80e-22 | 89.7 |
| Msa1155870 | AT1G10200.1 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.17e-61 | 190 |
| Msa1155870 | AT3G55770.4 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.77e-56 | 175 |
| Msa1155870 | AT3G55770.4 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.98e-23 | 90.5 |
| Msa1155870 | AT3G55770.6 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 2.04e-53 | 168 |
| Msa1155870 | AT3G55770.6 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.29e-23 | 90.9 |
| Msa1155870 | AT1G10200.2 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.94e-40 | 134 |
| Msa1155870 | AT1G10200.2 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.24e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7_4:+43834342 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7_4:+43833120 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7_4:+43834343 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7_4:+43833153 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7_4:-43834121 | Msa1155870:intron |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7_4:-43833279 | Msa1155870:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7_4:+43834357 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7_4:-43833121 | Msa1155870:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7_4:-43833332 | Msa1155870:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7_4:+43833159 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7_4:-43833775 | Msa1155870:intron |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7_4:+43833147 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7_4:+43833253 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7_4:-43834952 | Msa1155870:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7_4:-43834311 | Msa1155870:intron |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7_4:-43833364 | Msa1155870:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 7_4:+43833833 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7_4:-43833321 | Msa1155870:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7_4:-43834387 | Msa1155870:CDS |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7_4:-43834908 | Msa1155870:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7_4:+43833156 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7_4:-43833358 | Msa1155870:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7_4:+43833275 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7_4:+43833289 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7_4:-43833360 | Msa1155870:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7_4:-43833359 | Msa1155870:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7_4:+43834344 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 7_4:+43833834 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7_4:-43835018 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7_4:-43834896 | Msa1155870:intron |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7_4:+43833164 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7_4:-43834974 | Msa1155870:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7_4:-43833157 | Msa1155870:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7_4:-43833151 | Msa1155870:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 7_4:+43833821 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7_4:-43834907 | Msa1155870:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7_4:-43834383 | Msa1155870:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7_4:-43833318 | Msa1155870:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 7_4:-43833828 | Msa1155870:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7_4:-43834998 | Msa1155870:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7_4:-43833103 | Msa1155870:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7_4:-43833127 | Msa1155870:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7_4:+43833292 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7_4:+43833328 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr7_4:43833590-43833609 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr7_4:43834169-43834188 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr7_4:43834487-43834506 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr7_4:43833590-43833609 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr7_4:43834169-43834188 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr7_4:43834487-43834506 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr7_4:43833349-43833368 | Msa1155870:CDS | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | - | chr7_4:43834070-43834089 | Msa1155870:intron | 15.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr7_4:43833349-43833368 | Msa1155870:CDS | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | - | chr7_4:43834070-43834089 | Msa1155870:intron | 15.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr7_4:43833369-43833388 | Msa1155870:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr7_4:43833378-43833397 | Msa1155870:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr7_4:43833583-43833602 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr7_4:43833849-43833868 | Msa1155870:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr7_4:43833930-43833949 | Msa1155870:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr7_4:43834019-43834038 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr7_4:43834143-43834162 | Msa1155870:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr7_4:43833369-43833388 | Msa1155870:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr7_4:43833378-43833397 | Msa1155870:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr7_4:43833583-43833602 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr7_4:43833849-43833868 | Msa1155870:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr7_4:43833930-43833949 | Msa1155870:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr7_4:43834019-43834038 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr7_4:43834143-43834162 | Msa1155870:intron | 20.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr7_4:43833176-43833195 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr7_4:43833181-43833200 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr7_4:43833272-43833291 | Msa1155870:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr7_4:43833401-43833420 | Msa1155870:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr7_4:43833757-43833776 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr7_4:43833758-43833777 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr7_4:43833941-43833960 | Msa1155870:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr7_4:43834024-43834043 | Msa1155870:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr7_4:43834146-43834165 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr7_4:43834198-43834217 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr7_4:43834414-43834433 | None:intergenic | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr7_4:43833176-43833195 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr7_4:43833181-43833200 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr7_4:43833272-43833291 | Msa1155870:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr7_4:43833401-43833420 | Msa1155870:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr7_4:43833757-43833776 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr7_4:43833758-43833777 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr7_4:43833941-43833960 | Msa1155870:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr7_4:43834024-43834043 | Msa1155870:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr7_4:43834146-43834165 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr7_4:43834198-43834217 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr7_4:43834414-43834433 | None:intergenic | 25.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr7_4:43833146-43833165 | Msa1155870:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr7_4:43833400-43833419 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr7_4:43833406-43833425 | Msa1155870:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr7_4:43833432-43833451 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr7_4:43833670-43833689 | Msa1155870:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr7_4:43833759-43833778 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr7_4:43833756-43833775 | Msa1155870:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr7_4:43833787-43833806 | Msa1155870:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr7_4:43833903-43833922 | Msa1155870:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr7_4:43833977-43833996 | Msa1155870:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr7_4:43834015-43834034 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr7_4:43834317-43834336 | Msa1155870:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr7_4:43834323-43834342 | Msa1155870:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr7_4:43834336-43834355 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr7_4:43834447-43834466 | Msa1155870:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr7_4:43834461-43834480 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr7_4:43834511-43834530 | Msa1155870:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr7_4:43834512-43834531 | Msa1155870:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | + | chr7_4:43834551-43834570 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | - | chr7_4:43834554-43834573 | Msa1155870:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr7_4:43834596-43834615 | Msa1155870:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr7_4:43834604-43834623 | Msa1155870:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr7_4:43834605-43834624 | Msa1155870:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr7_4:43834606-43834625 | Msa1155870:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr7_4:43834734-43834753 | Msa1155870:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr7_4:43834739-43834758 | Msa1155870:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr7_4:43834860-43834879 | Msa1155870:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr7_4:43833146-43833165 | Msa1155870:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr7_4:43833400-43833419 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr7_4:43833406-43833425 | Msa1155870:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr7_4:43833432-43833451 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr7_4:43833670-43833689 | Msa1155870:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr7_4:43833759-43833778 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr7_4:43833756-43833775 | Msa1155870:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr7_4:43833787-43833806 | Msa1155870:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr7_4:43833903-43833922 | Msa1155870:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr7_4:43833977-43833996 | Msa1155870:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr7_4:43834015-43834034 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr7_4:43834317-43834336 | Msa1155870:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr7_4:43834323-43834342 | Msa1155870:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr7_4:43834336-43834355 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr7_4:43834447-43834466 | Msa1155870:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr7_4:43834461-43834480 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr7_4:43834511-43834530 | Msa1155870:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr7_4:43834512-43834531 | Msa1155870:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | + | chr7_4:43834551-43834570 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | - | chr7_4:43834554-43834573 | Msa1155870:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr7_4:43834596-43834615 | Msa1155870:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr7_4:43834604-43834623 | Msa1155870:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr7_4:43834605-43834624 | Msa1155870:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr7_4:43834606-43834625 | Msa1155870:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr7_4:43834734-43834753 | Msa1155870:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr7_4:43834739-43834758 | Msa1155870:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr7_4:43834860-43834879 | Msa1155870:intron | 30.0% |
| AGGAACTCTTGATAAATGCA+AGG | - | chr7_4:43833100-43833119 | Msa1155870:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr7_4:43833124-43833143 | Msa1155870:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr7_4:43833191-43833210 | Msa1155870:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr7_4:43833408-43833427 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr7_4:43833405-43833424 | Msa1155870:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr7_4:43833483-43833502 | Msa1155870:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr7_4:43833484-43833503 | Msa1155870:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr7_4:43833669-43833688 | Msa1155870:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr7_4:43833685-43833704 | Msa1155870:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr7_4:43833763-43833782 | Msa1155870:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr7_4:43834238-43834257 | Msa1155870:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr7_4:43834280-43834299 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | + | chr7_4:43834654-43834673 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr7_4:43834655-43834674 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr7_4:43834656-43834675 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr7_4:43834694-43834713 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr7_4:43834738-43834757 | Msa1155870:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr7_4:43834740-43834759 | Msa1155870:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr7_4:43834848-43834867 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr7_4:43834971-43834990 | Msa1155870:CDS | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | - | chr7_4:43833100-43833119 | Msa1155870:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr7_4:43833124-43833143 | Msa1155870:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr7_4:43833191-43833210 | Msa1155870:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr7_4:43833408-43833427 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr7_4:43833405-43833424 | Msa1155870:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr7_4:43833483-43833502 | Msa1155870:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr7_4:43833484-43833503 | Msa1155870:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr7_4:43833669-43833688 | Msa1155870:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr7_4:43833685-43833704 | Msa1155870:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr7_4:43833763-43833782 | Msa1155870:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr7_4:43834238-43834257 | Msa1155870:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr7_4:43834280-43834299 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | + | chr7_4:43834654-43834673 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr7_4:43834655-43834674 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr7_4:43834656-43834675 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr7_4:43834694-43834713 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr7_4:43834738-43834757 | Msa1155870:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr7_4:43834740-43834759 | Msa1155870:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr7_4:43834848-43834867 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr7_4:43834971-43834990 | Msa1155870:CDS | 35.0% | |
| CTTAAAATGCACTCACTGCA+AGG | - | chr7_4:43833190-43833209 | Msa1155870:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr7_4:43833202-43833221 | Msa1155870:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr7_4:43833711-43833730 | Msa1155870:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr7_4:43833715-43833734 | Msa1155870:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr7_4:43834267-43834286 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr7_4:43834766-43834785 | Msa1155870:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr7_4:43834809-43834828 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr7_4:43834812-43834831 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr7_4:43834867-43834886 | Msa1155870:intron | 40.0% |
| CTTAAAATGCACTCACTGCA+AGG | - | chr7_4:43833190-43833209 | Msa1155870:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr7_4:43833202-43833221 | Msa1155870:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr7_4:43833711-43833730 | Msa1155870:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr7_4:43833715-43833734 | Msa1155870:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr7_4:43834267-43834286 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr7_4:43834766-43834785 | Msa1155870:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr7_4:43834809-43834828 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr7_4:43834812-43834831 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr7_4:43834867-43834886 | Msa1155870:intron | 40.0% |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr7_4:43833417-43833436 | Msa1155870:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr7_4:43833744-43833763 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr7_4:43834268-43834287 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr7_4:43834270-43834289 | Msa1155870:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr7_4:43834588-43834607 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr7_4:43834647-43834666 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr7_4:43834648-43834667 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr7_4:43834773-43834792 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr7_4:43834777-43834796 | Msa1155870:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr7_4:43834819-43834838 | Msa1155870:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr7_4:43834977-43834996 | Msa1155870:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr7_4:43834995-43835014 | Msa1155870:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr7_4:43833417-43833436 | Msa1155870:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr7_4:43833744-43833763 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr7_4:43834268-43834287 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr7_4:43834270-43834289 | Msa1155870:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr7_4:43834588-43834607 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr7_4:43834647-43834666 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr7_4:43834648-43834667 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr7_4:43834773-43834792 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr7_4:43834777-43834796 | Msa1155870:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr7_4:43834819-43834838 | Msa1155870:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr7_4:43834977-43834996 | Msa1155870:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr7_4:43834995-43835014 | Msa1155870:CDS | 45.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr7_4:43834106-43834125 | Msa1155870:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr7_4:43834114-43834133 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr7_4:43834249-43834268 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr7_4:43834574-43834593 | Msa1155870:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr7_4:43834613-43834632 | Msa1155870:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr7_4:43834614-43834633 | Msa1155870:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr7_4:43834649-43834668 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr7_4:43834666-43834685 | Msa1155870:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr7_4:43834667-43834686 | Msa1155870:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr7_4:43834668-43834687 | Msa1155870:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr7_4:43834780-43834799 | Msa1155870:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr7_4:43834826-43834845 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr7_4:43834948-43834967 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr7_4:43834947-43834966 | Msa1155870:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr7_4:43834981-43835000 | None:intergenic | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr7_4:43834106-43834125 | Msa1155870:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr7_4:43834114-43834133 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr7_4:43834249-43834268 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr7_4:43834574-43834593 | Msa1155870:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr7_4:43834613-43834632 | Msa1155870:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr7_4:43834614-43834633 | Msa1155870:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr7_4:43834649-43834668 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr7_4:43834666-43834685 | Msa1155870:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr7_4:43834667-43834686 | Msa1155870:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr7_4:43834668-43834687 | Msa1155870:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr7_4:43834780-43834799 | Msa1155870:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr7_4:43834826-43834845 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr7_4:43834948-43834967 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr7_4:43834947-43834966 | Msa1155870:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr7_4:43834981-43835000 | None:intergenic | 50.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr7_4:43834117-43834136 | Msa1155870:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr7_4:43834615-43834634 | Msa1155870:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr7_4:43834942-43834961 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr7_4:43834941-43834960 | Msa1155870:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr7_4:43834945-43834964 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr7_4:43834954-43834973 | None:intergenic | 55.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr7_4:43834117-43834136 | Msa1155870:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr7_4:43834615-43834634 | Msa1155870:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr7_4:43834942-43834961 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr7_4:43834941-43834960 | Msa1155870:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr7_4:43834945-43834964 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr7_4:43834954-43834973 | None:intergenic | 55.0% | |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr7_4:43834937-43834956 | None:intergenic | 60.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr7_4:43834937-43834956 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43833089 | 43835031 | 43833089 | ID=Msa1155870;Name=Msa1155870 |
| chr7_4 | mRNA | 43833089 | 43835031 | 43833089 | ID=Msa1155870-mRNA-1;Parent=Msa1155870;Name=Msa1155870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|212 |
| chr7_4 | exon | 43834897 | 43835031 | 43834897 | ID=Msa1155870-mRNA-1:exon:11122;Parent=Msa1155870-mRNA-1 |
| chr7_4 | exon | 43834312 | 43834408 | 43834312 | ID=Msa1155870-mRNA-1:exon:11121;Parent=Msa1155870-mRNA-1 |
| chr7_4 | exon | 43834122 | 43834153 | 43834122 | ID=Msa1155870-mRNA-1:exon:11120;Parent=Msa1155870-mRNA-1 |
| chr7_4 | exon | 43833776 | 43833865 | 43833776 | ID=Msa1155870-mRNA-1:exon:11119;Parent=Msa1155870-mRNA-1 |
| chr7_4 | exon | 43833089 | 43833373 | 43833089 | ID=Msa1155870-mRNA-1:exon:11118;Parent=Msa1155870-mRNA-1 |
| chr7_4 | CDS | 43834897 | 43835031 | 43834897 | ID=Msa1155870-mRNA-1:cds;Parent=Msa1155870-mRNA-1 |
| chr7_4 | CDS | 43834312 | 43834408 | 43834312 | ID=Msa1155870-mRNA-1:cds;Parent=Msa1155870-mRNA-1 |
| chr7_4 | CDS | 43834122 | 43834153 | 43834122 | ID=Msa1155870-mRNA-1:cds;Parent=Msa1155870-mRNA-1 |
| chr7_4 | CDS | 43833776 | 43833865 | 43833776 | ID=Msa1155870-mRNA-1:cds;Parent=Msa1155870-mRNA-1 |
| chr7_4 | CDS | 43833089 | 43833373 | 43833089 | ID=Msa1155870-mRNA-1:cds;Parent=Msa1155870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
