Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305370 | XP_003623892.1 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.17e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305370 | sp|O80839|PLI2A_ARATH | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.97e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305370 | G7L3J0 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 5.59e-152 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1305370 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066630 | Msa1305370 | 0.932108 | 1.395502e-94 | -8.615850e-47 |
| Msa1155400 | Msa1305370 | 0.965778 | 4.766326e-125 | -8.615850e-47 |
| Msa1155490 | Msa1305370 | 0.913892 | 3.631293e-84 | -8.615850e-47 |
| Msa1155870 | Msa1305370 | 0.971613 | 1.933082e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305370 | MtrunA17_Chr7g0247111 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.08e-155 | 429 |
| Msa1305370 | MtrunA17_Chr8g0349391 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 8.71e-111 | 315 |
| Msa1305370 | MtrunA17_Chr3g0113051 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 4.84e-86 | 252 |
| Msa1305370 | MtrunA17_Chr8g0386501 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 9.21e-74 | 222 |
| Msa1305370 | MtrunA17_Chr1g0152431 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.43e-60 | 188 |
| Msa1305370 | MtrunA17_Chr4g0059371 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.00e-56 | 176 |
| Msa1305370 | MtrunA17_Chr4g0059371 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 5.72e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305370 | AT2G45800.1 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 4.03e-106 | 305 |
| Msa1305370 | AT1G01780.1 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.97e-106 | 303 |
| Msa1305370 | AT3G61230.1 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.83e-104 | 300 |
| Msa1305370 | AT2G39900.1 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.19e-90 | 263 |
| Msa1305370 | AT3G55770.3 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1305370 | AT3G55770.5 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1305370 | AT3G55770.2 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1305370 | AT3G55770.1 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1305370 | AT3G55770.7 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.34e-81 | 242 |
| Msa1305370 | AT2G45800.2 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 5.19e-75 | 225 |
| Msa1305370 | AT2G45800.2 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.80e-22 | 89.7 |
| Msa1305370 | AT1G10200.1 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.17e-61 | 190 |
| Msa1305370 | AT3G55770.4 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.77e-56 | 175 |
| Msa1305370 | AT3G55770.4 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.98e-23 | 90.5 |
| Msa1305370 | AT3G55770.6 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 2.04e-53 | 168 |
| Msa1305370 | AT3G55770.6 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.29e-23 | 90.9 |
| Msa1305370 | AT1G10200.2 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.94e-40 | 134 |
| Msa1305370 | AT1G10200.2 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.24e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 8_3:+68830480 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 8_3:+68829258 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 8_3:+68830481 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 8_3:+68829291 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 8_3:-68830259 | Msa1305370:intron |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 8_3:-68829417 | Msa1305370:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 8_3:+68830495 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 8_3:-68829259 | Msa1305370:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 8_3:-68829470 | Msa1305370:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 8_3:+68829297 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 8_3:-68829913 | Msa1305370:intron |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 8_3:+68829285 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 8_3:+68829391 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 8_3:-68831090 | Msa1305370:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 8_3:-68830449 | Msa1305370:intron |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 8_3:-68829502 | Msa1305370:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 8_3:+68829971 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 8_3:-68829459 | Msa1305370:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 8_3:-68830525 | Msa1305370:CDS |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 8_3:-68831046 | Msa1305370:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 8_3:+68829294 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 8_3:-68829496 | Msa1305370:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 8_3:+68829413 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 8_3:+68829427 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 8_3:-68829498 | Msa1305370:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 8_3:-68829497 | Msa1305370:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 8_3:+68830482 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 8_3:+68829972 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 8_3:-68831156 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 8_3:-68831034 | Msa1305370:intron |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 8_3:+68829302 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 8_3:-68831112 | Msa1305370:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 8_3:-68829295 | Msa1305370:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 8_3:-68829289 | Msa1305370:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 8_3:+68829959 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 8_3:-68831045 | Msa1305370:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 8_3:-68830521 | Msa1305370:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 8_3:-68829456 | Msa1305370:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 8_3:-68829966 | Msa1305370:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 8_3:-68831136 | Msa1305370:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 8_3:-68829241 | Msa1305370:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 8_3:-68829265 | Msa1305370:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 8_3:+68829430 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 8_3:+68829466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr8_3:68829728-68829747 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr8_3:68830307-68830326 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr8_3:68830625-68830644 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr8_3:68829728-68829747 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr8_3:68830307-68830326 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr8_3:68830625-68830644 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr8_3:68829487-68829506 | Msa1305370:CDS | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | - | chr8_3:68830208-68830227 | Msa1305370:intron | 15.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr8_3:68829487-68829506 | Msa1305370:CDS | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | - | chr8_3:68830208-68830227 | Msa1305370:intron | 15.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr8_3:68829507-68829526 | Msa1305370:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr8_3:68829516-68829535 | Msa1305370:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr8_3:68829721-68829740 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr8_3:68829987-68830006 | Msa1305370:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr8_3:68830068-68830087 | Msa1305370:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr8_3:68830157-68830176 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr8_3:68830281-68830300 | Msa1305370:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr8_3:68829507-68829526 | Msa1305370:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr8_3:68829516-68829535 | Msa1305370:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr8_3:68829721-68829740 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr8_3:68829987-68830006 | Msa1305370:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr8_3:68830068-68830087 | Msa1305370:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr8_3:68830157-68830176 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr8_3:68830281-68830300 | Msa1305370:intron | 20.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr8_3:68829314-68829333 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr8_3:68829319-68829338 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr8_3:68829410-68829429 | Msa1305370:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr8_3:68829539-68829558 | Msa1305370:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr8_3:68829895-68829914 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr8_3:68829896-68829915 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr8_3:68830079-68830098 | Msa1305370:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr8_3:68830162-68830181 | Msa1305370:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr8_3:68830284-68830303 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr8_3:68830336-68830355 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr8_3:68830552-68830571 | None:intergenic | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr8_3:68829314-68829333 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr8_3:68829319-68829338 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr8_3:68829410-68829429 | Msa1305370:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr8_3:68829539-68829558 | Msa1305370:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr8_3:68829895-68829914 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr8_3:68829896-68829915 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr8_3:68830079-68830098 | Msa1305370:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr8_3:68830162-68830181 | Msa1305370:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr8_3:68830284-68830303 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr8_3:68830336-68830355 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr8_3:68830552-68830571 | None:intergenic | 25.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr8_3:68829284-68829303 | Msa1305370:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr8_3:68829538-68829557 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr8_3:68829544-68829563 | Msa1305370:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr8_3:68829570-68829589 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr8_3:68829808-68829827 | Msa1305370:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr8_3:68829897-68829916 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr8_3:68829894-68829913 | Msa1305370:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr8_3:68829925-68829944 | Msa1305370:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr8_3:68830041-68830060 | Msa1305370:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr8_3:68830115-68830134 | Msa1305370:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr8_3:68830153-68830172 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr8_3:68830455-68830474 | Msa1305370:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr8_3:68830461-68830480 | Msa1305370:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr8_3:68830474-68830493 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr8_3:68830585-68830604 | Msa1305370:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr8_3:68830599-68830618 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr8_3:68830649-68830668 | Msa1305370:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr8_3:68830650-68830669 | Msa1305370:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | + | chr8_3:68830689-68830708 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | - | chr8_3:68830692-68830711 | Msa1305370:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr8_3:68830734-68830753 | Msa1305370:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr8_3:68830742-68830761 | Msa1305370:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr8_3:68830743-68830762 | Msa1305370:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr8_3:68830744-68830763 | Msa1305370:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr8_3:68830872-68830891 | Msa1305370:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr8_3:68830877-68830896 | Msa1305370:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr8_3:68830998-68831017 | Msa1305370:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr8_3:68829284-68829303 | Msa1305370:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr8_3:68829538-68829557 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr8_3:68829544-68829563 | Msa1305370:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr8_3:68829570-68829589 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr8_3:68829808-68829827 | Msa1305370:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr8_3:68829897-68829916 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr8_3:68829894-68829913 | Msa1305370:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr8_3:68829925-68829944 | Msa1305370:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr8_3:68830041-68830060 | Msa1305370:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr8_3:68830115-68830134 | Msa1305370:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr8_3:68830153-68830172 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr8_3:68830455-68830474 | Msa1305370:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr8_3:68830461-68830480 | Msa1305370:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr8_3:68830474-68830493 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr8_3:68830585-68830604 | Msa1305370:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr8_3:68830599-68830618 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr8_3:68830649-68830668 | Msa1305370:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr8_3:68830650-68830669 | Msa1305370:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | + | chr8_3:68830689-68830708 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | - | chr8_3:68830692-68830711 | Msa1305370:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr8_3:68830734-68830753 | Msa1305370:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr8_3:68830742-68830761 | Msa1305370:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr8_3:68830743-68830762 | Msa1305370:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr8_3:68830744-68830763 | Msa1305370:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr8_3:68830872-68830891 | Msa1305370:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr8_3:68830877-68830896 | Msa1305370:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr8_3:68830998-68831017 | Msa1305370:intron | 30.0% |
| AGGAACTCTTGATAAATGCA+AGG | - | chr8_3:68829238-68829257 | Msa1305370:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr8_3:68829262-68829281 | Msa1305370:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr8_3:68829329-68829348 | Msa1305370:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr8_3:68829546-68829565 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr8_3:68829543-68829562 | Msa1305370:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr8_3:68829621-68829640 | Msa1305370:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr8_3:68829622-68829641 | Msa1305370:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr8_3:68829807-68829826 | Msa1305370:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr8_3:68829823-68829842 | Msa1305370:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr8_3:68829901-68829920 | Msa1305370:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr8_3:68830376-68830395 | Msa1305370:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr8_3:68830418-68830437 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | + | chr8_3:68830792-68830811 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr8_3:68830793-68830812 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr8_3:68830794-68830813 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr8_3:68830832-68830851 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr8_3:68830876-68830895 | Msa1305370:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr8_3:68830878-68830897 | Msa1305370:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr8_3:68830986-68831005 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr8_3:68831109-68831128 | Msa1305370:CDS | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | - | chr8_3:68829238-68829257 | Msa1305370:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr8_3:68829262-68829281 | Msa1305370:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr8_3:68829329-68829348 | Msa1305370:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr8_3:68829546-68829565 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr8_3:68829543-68829562 | Msa1305370:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr8_3:68829621-68829640 | Msa1305370:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr8_3:68829622-68829641 | Msa1305370:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr8_3:68829807-68829826 | Msa1305370:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr8_3:68829823-68829842 | Msa1305370:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr8_3:68829901-68829920 | Msa1305370:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr8_3:68830376-68830395 | Msa1305370:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr8_3:68830418-68830437 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | + | chr8_3:68830792-68830811 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr8_3:68830793-68830812 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr8_3:68830794-68830813 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr8_3:68830832-68830851 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr8_3:68830876-68830895 | Msa1305370:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr8_3:68830878-68830897 | Msa1305370:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr8_3:68830986-68831005 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr8_3:68831109-68831128 | Msa1305370:CDS | 35.0% | |
| CTTAAAATGCACTCACTGCA+AGG | - | chr8_3:68829328-68829347 | Msa1305370:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr8_3:68829340-68829359 | Msa1305370:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr8_3:68829849-68829868 | Msa1305370:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr8_3:68829853-68829872 | Msa1305370:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr8_3:68830405-68830424 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr8_3:68830904-68830923 | Msa1305370:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr8_3:68830947-68830966 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr8_3:68830950-68830969 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr8_3:68831005-68831024 | Msa1305370:intron | 40.0% |
| CTTAAAATGCACTCACTGCA+AGG | - | chr8_3:68829328-68829347 | Msa1305370:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr8_3:68829340-68829359 | Msa1305370:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr8_3:68829849-68829868 | Msa1305370:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr8_3:68829853-68829872 | Msa1305370:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr8_3:68830405-68830424 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr8_3:68830904-68830923 | Msa1305370:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr8_3:68830947-68830966 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr8_3:68830950-68830969 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr8_3:68831005-68831024 | Msa1305370:intron | 40.0% |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr8_3:68829555-68829574 | Msa1305370:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr8_3:68829882-68829901 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr8_3:68830406-68830425 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr8_3:68830408-68830427 | Msa1305370:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr8_3:68830726-68830745 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr8_3:68830785-68830804 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr8_3:68830786-68830805 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr8_3:68830911-68830930 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr8_3:68830915-68830934 | Msa1305370:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr8_3:68830957-68830976 | Msa1305370:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr8_3:68831115-68831134 | Msa1305370:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr8_3:68831133-68831152 | Msa1305370:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr8_3:68829555-68829574 | Msa1305370:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr8_3:68829882-68829901 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr8_3:68830406-68830425 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr8_3:68830408-68830427 | Msa1305370:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr8_3:68830726-68830745 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr8_3:68830785-68830804 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr8_3:68830786-68830805 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr8_3:68830911-68830930 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr8_3:68830915-68830934 | Msa1305370:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr8_3:68830957-68830976 | Msa1305370:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr8_3:68831115-68831134 | Msa1305370:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr8_3:68831133-68831152 | Msa1305370:CDS | 45.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr8_3:68830244-68830263 | Msa1305370:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr8_3:68830252-68830271 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr8_3:68830387-68830406 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr8_3:68830712-68830731 | Msa1305370:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr8_3:68830751-68830770 | Msa1305370:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr8_3:68830752-68830771 | Msa1305370:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr8_3:68830787-68830806 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr8_3:68830804-68830823 | Msa1305370:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr8_3:68830805-68830824 | Msa1305370:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr8_3:68830806-68830825 | Msa1305370:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr8_3:68830918-68830937 | Msa1305370:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr8_3:68830964-68830983 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr8_3:68831086-68831105 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr8_3:68831085-68831104 | Msa1305370:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr8_3:68831119-68831138 | None:intergenic | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr8_3:68830244-68830263 | Msa1305370:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr8_3:68830252-68830271 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr8_3:68830387-68830406 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr8_3:68830712-68830731 | Msa1305370:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr8_3:68830751-68830770 | Msa1305370:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr8_3:68830752-68830771 | Msa1305370:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr8_3:68830787-68830806 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr8_3:68830804-68830823 | Msa1305370:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr8_3:68830805-68830824 | Msa1305370:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr8_3:68830806-68830825 | Msa1305370:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr8_3:68830918-68830937 | Msa1305370:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr8_3:68830964-68830983 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr8_3:68831086-68831105 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr8_3:68831085-68831104 | Msa1305370:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr8_3:68831119-68831138 | None:intergenic | 50.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr8_3:68830255-68830274 | Msa1305370:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr8_3:68830753-68830772 | Msa1305370:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr8_3:68831080-68831099 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr8_3:68831079-68831098 | Msa1305370:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr8_3:68831083-68831102 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr8_3:68831092-68831111 | None:intergenic | 55.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr8_3:68830255-68830274 | Msa1305370:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr8_3:68830753-68830772 | Msa1305370:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr8_3:68831080-68831099 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr8_3:68831079-68831098 | Msa1305370:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr8_3:68831083-68831102 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr8_3:68831092-68831111 | None:intergenic | 55.0% | |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr8_3:68831075-68831094 | None:intergenic | 60.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr8_3:68831075-68831094 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 68829227 | 68831169 | 68829227 | ID=Msa1305370;Name=Msa1305370 |
| chr8_3 | mRNA | 68829227 | 68831169 | 68829227 | ID=Msa1305370-mRNA-1;Parent=Msa1305370;Name=Msa1305370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|212 |
| chr8_3 | exon | 68831035 | 68831169 | 68831035 | ID=Msa1305370-mRNA-1:exon:21331;Parent=Msa1305370-mRNA-1 |
| chr8_3 | exon | 68830450 | 68830546 | 68830450 | ID=Msa1305370-mRNA-1:exon:21330;Parent=Msa1305370-mRNA-1 |
| chr8_3 | exon | 68830260 | 68830291 | 68830260 | ID=Msa1305370-mRNA-1:exon:21329;Parent=Msa1305370-mRNA-1 |
| chr8_3 | exon | 68829914 | 68830003 | 68829914 | ID=Msa1305370-mRNA-1:exon:21328;Parent=Msa1305370-mRNA-1 |
| chr8_3 | exon | 68829227 | 68829511 | 68829227 | ID=Msa1305370-mRNA-1:exon:21327;Parent=Msa1305370-mRNA-1 |
| chr8_3 | CDS | 68831035 | 68831169 | 68831035 | ID=Msa1305370-mRNA-1:cds;Parent=Msa1305370-mRNA-1 |
| chr8_3 | CDS | 68830450 | 68830546 | 68830450 | ID=Msa1305370-mRNA-1:cds;Parent=Msa1305370-mRNA-1 |
| chr8_3 | CDS | 68830260 | 68830291 | 68830260 | ID=Msa1305370-mRNA-1:cds;Parent=Msa1305370-mRNA-1 |
| chr8_3 | CDS | 68829914 | 68830003 | 68829914 | ID=Msa1305370-mRNA-1:cds;Parent=Msa1305370-mRNA-1 |
| chr8_3 | CDS | 68829227 | 68829511 | 68829227 | ID=Msa1305370-mRNA-1:cds;Parent=Msa1305370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
