Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155400 | XP_003623892.1 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.17e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155400 | sp|O80839|PLI2A_ARATH | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.97e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155400 | G7L3J0 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 5.59e-152 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1155400 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066630 | Msa1155400 | 0.925114 | 2.841428e-90 | -8.615850e-47 |
| Msa1155400 | Msa1155490 | 0.907744 | 3.640507e-81 | -8.615850e-47 |
| Msa1155400 | Msa1155870 | 0.966300 | 9.762290e-126 | -8.615850e-47 |
| Msa1155400 | Msa1305370 | 0.965778 | 4.766326e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155400 | MtrunA17_Chr7g0247111 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.08e-155 | 429 |
| Msa1155400 | MtrunA17_Chr8g0349391 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 8.71e-111 | 315 |
| Msa1155400 | MtrunA17_Chr3g0113051 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 4.84e-86 | 252 |
| Msa1155400 | MtrunA17_Chr8g0386501 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 9.21e-74 | 222 |
| Msa1155400 | MtrunA17_Chr1g0152431 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.43e-60 | 188 |
| Msa1155400 | MtrunA17_Chr4g0059371 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.00e-56 | 176 |
| Msa1155400 | MtrunA17_Chr4g0059371 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 5.72e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155400 | AT2G45800.1 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 4.03e-106 | 305 |
| Msa1155400 | AT1G01780.1 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.97e-106 | 303 |
| Msa1155400 | AT3G61230.1 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.83e-104 | 300 |
| Msa1155400 | AT2G39900.1 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.19e-90 | 263 |
| Msa1155400 | AT3G55770.3 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155400 | AT3G55770.5 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155400 | AT3G55770.2 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155400 | AT3G55770.1 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155400 | AT3G55770.7 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.34e-81 | 242 |
| Msa1155400 | AT2G45800.2 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 5.19e-75 | 225 |
| Msa1155400 | AT2G45800.2 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.80e-22 | 89.7 |
| Msa1155400 | AT1G10200.1 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.17e-61 | 190 |
| Msa1155400 | AT3G55770.4 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.77e-56 | 175 |
| Msa1155400 | AT3G55770.4 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.98e-23 | 90.5 |
| Msa1155400 | AT3G55770.6 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 2.04e-53 | 168 |
| Msa1155400 | AT3G55770.6 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.29e-23 | 90.9 |
| Msa1155400 | AT1G10200.2 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.94e-40 | 134 |
| Msa1155400 | AT1G10200.2 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.24e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7_4:-43346517 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7_4:-43347739 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7_4:-43346516 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7_4:-43347706 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7_4:+43346738 | Msa1155400:CDS |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7_4:+43347580 | Msa1155400:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7_4:-43346502 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7_4:+43347738 | Msa1155400:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7_4:+43347527 | Msa1155400:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7_4:-43347700 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7_4:+43347084 | Msa1155400:CDS |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7_4:-43347712 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7_4:-43347606 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7_4:+43345906 | Msa1155400:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7_4:+43346548 | Msa1155400:CDS |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7_4:+43347495 | Msa1155400:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 7_4:-43347026 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7_4:+43347538 | Msa1155400:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7_4:+43346472 | Msa1155400:intron |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7_4:+43345950 | Msa1155400:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7_4:-43347703 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7_4:+43347501 | Msa1155400:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7_4:-43347584 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7_4:-43347570 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7_4:+43347499 | Msa1155400:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7_4:+43347500 | Msa1155400:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7_4:-43346515 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 7_4:-43347025 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7_4:+43345840 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7_4:+43345962 | Msa1155400:CDS |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7_4:-43347695 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7_4:+43345884 | Msa1155400:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7_4:+43347702 | Msa1155400:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7_4:+43347708 | Msa1155400:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 7_4:-43347038 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7_4:+43345951 | Msa1155400:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7_4:+43346476 | Msa1155400:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7_4:+43347541 | Msa1155400:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 7_4:+43347031 | Msa1155400:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7_4:+43345860 | Msa1155400:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7_4:+43347756 | Msa1155400:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7_4:+43347732 | Msa1155400:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7_4:-43347567 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7_4:-43347531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTACAAAAATTAAATTA+TGG | - | chr7_4:43346351-43346370 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | - | chr7_4:43346930-43346949 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | - | chr7_4:43347248-43347267 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | - | chr7_4:43346351-43346370 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | - | chr7_4:43346930-43346949 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | - | chr7_4:43347248-43347267 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | + | chr7_4:43346109-43346128 | Msa1155400:intron | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | + | chr7_4:43346831-43346850 | Msa1155400:intron | 15.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | + | chr7_4:43346109-43346128 | Msa1155400:intron | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | + | chr7_4:43346831-43346850 | Msa1155400:intron | 15.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | + | chr7_4:43346129-43346148 | Msa1155400:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | + | chr7_4:43346138-43346157 | Msa1155400:intron | 20.0% |
| !! | AAAATTAAATTATGGCACTA+GGG | - | chr7_4:43346343-43346362 | None:intergenic | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | - | chr7_4:43346344-43346363 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | + | chr7_4:43346610-43346629 | Msa1155400:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | + | chr7_4:43346691-43346710 | Msa1155400:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | - | chr7_4:43346780-43346799 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | + | chr7_4:43346904-43346923 | Msa1155400:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | + | chr7_4:43346129-43346148 | Msa1155400:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | + | chr7_4:43346138-43346157 | Msa1155400:intron | 20.0% |
| !! | AAAATTAAATTATGGCACTA+GGG | - | chr7_4:43346343-43346362 | None:intergenic | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | - | chr7_4:43346344-43346363 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | + | chr7_4:43346610-43346629 | Msa1155400:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | + | chr7_4:43346691-43346710 | Msa1155400:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | - | chr7_4:43346780-43346799 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | + | chr7_4:43346904-43346923 | Msa1155400:intron | 20.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | - | chr7_4:43345936-43345955 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | - | chr7_4:43345941-43345960 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | + | chr7_4:43346032-43346051 | Msa1155400:intron | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | + | chr7_4:43346161-43346180 | Msa1155400:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | - | chr7_4:43346518-43346537 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | - | chr7_4:43346519-43346538 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | + | chr7_4:43346702-43346721 | Msa1155400:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | + | chr7_4:43346785-43346804 | Msa1155400:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | - | chr7_4:43346907-43346926 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | - | chr7_4:43346959-43346978 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | - | chr7_4:43347175-43347194 | None:intergenic | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | - | chr7_4:43345936-43345955 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | - | chr7_4:43345941-43345960 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | + | chr7_4:43346032-43346051 | Msa1155400:intron | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | + | chr7_4:43346161-43346180 | Msa1155400:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | - | chr7_4:43346518-43346537 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | - | chr7_4:43346519-43346538 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | + | chr7_4:43346702-43346721 | Msa1155400:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | + | chr7_4:43346785-43346804 | Msa1155400:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | - | chr7_4:43346907-43346926 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | - | chr7_4:43346959-43346978 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | - | chr7_4:43347175-43347194 | None:intergenic | 25.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | + | chr7_4:43345906-43345925 | Msa1155400:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | - | chr7_4:43346160-43346179 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | + | chr7_4:43346166-43346185 | Msa1155400:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | - | chr7_4:43346192-43346211 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | + | chr7_4:43346431-43346450 | Msa1155400:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | - | chr7_4:43346520-43346539 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | + | chr7_4:43346517-43346536 | Msa1155400:CDS | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | + | chr7_4:43346548-43346567 | Msa1155400:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | + | chr7_4:43346664-43346683 | Msa1155400:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | + | chr7_4:43346738-43346757 | Msa1155400:CDS | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | - | chr7_4:43346776-43346795 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | + | chr7_4:43347078-43347097 | Msa1155400:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | + | chr7_4:43347084-43347103 | Msa1155400:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | - | chr7_4:43347097-43347116 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | + | chr7_4:43347208-43347227 | Msa1155400:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | - | chr7_4:43347222-43347241 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | + | chr7_4:43347272-43347291 | Msa1155400:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | + | chr7_4:43347273-43347292 | Msa1155400:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | - | chr7_4:43347312-43347331 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | + | chr7_4:43347315-43347334 | Msa1155400:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | + | chr7_4:43347357-43347376 | Msa1155400:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr7_4:43347365-43347384 | Msa1155400:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr7_4:43347366-43347385 | Msa1155400:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr7_4:43347367-43347386 | Msa1155400:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | + | chr7_4:43347495-43347514 | Msa1155400:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | + | chr7_4:43347500-43347519 | Msa1155400:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | + | chr7_4:43347621-43347640 | Msa1155400:CDS | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | + | chr7_4:43345906-43345925 | Msa1155400:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | - | chr7_4:43346160-43346179 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | + | chr7_4:43346166-43346185 | Msa1155400:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | - | chr7_4:43346192-43346211 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | + | chr7_4:43346431-43346450 | Msa1155400:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | - | chr7_4:43346520-43346539 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | + | chr7_4:43346517-43346536 | Msa1155400:CDS | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | + | chr7_4:43346548-43346567 | Msa1155400:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | + | chr7_4:43346664-43346683 | Msa1155400:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | + | chr7_4:43346738-43346757 | Msa1155400:CDS | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | - | chr7_4:43346776-43346795 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | + | chr7_4:43347078-43347097 | Msa1155400:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | + | chr7_4:43347084-43347103 | Msa1155400:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | - | chr7_4:43347097-43347116 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | + | chr7_4:43347208-43347227 | Msa1155400:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | - | chr7_4:43347222-43347241 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | + | chr7_4:43347272-43347291 | Msa1155400:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | + | chr7_4:43347273-43347292 | Msa1155400:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | - | chr7_4:43347312-43347331 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | + | chr7_4:43347315-43347334 | Msa1155400:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | + | chr7_4:43347357-43347376 | Msa1155400:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr7_4:43347365-43347384 | Msa1155400:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr7_4:43347366-43347385 | Msa1155400:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr7_4:43347367-43347386 | Msa1155400:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | + | chr7_4:43347495-43347514 | Msa1155400:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | + | chr7_4:43347500-43347519 | Msa1155400:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | + | chr7_4:43347621-43347640 | Msa1155400:CDS | 30.0% |
| AGGAACTCTTGATAAATGCA+AGG | + | chr7_4:43345860-43345879 | Msa1155400:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | + | chr7_4:43345884-43345903 | Msa1155400:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | + | chr7_4:43345951-43345970 | Msa1155400:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | - | chr7_4:43346168-43346187 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | + | chr7_4:43346165-43346184 | Msa1155400:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | + | chr7_4:43346243-43346262 | Msa1155400:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | + | chr7_4:43346244-43346263 | Msa1155400:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | + | chr7_4:43346430-43346449 | Msa1155400:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | + | chr7_4:43346446-43346465 | Msa1155400:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | + | chr7_4:43346524-43346543 | Msa1155400:CDS | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | + | chr7_4:43346999-43347018 | Msa1155400:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | - | chr7_4:43347041-43347060 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | - | chr7_4:43347415-43347434 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | - | chr7_4:43347416-43347435 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | - | chr7_4:43347417-43347436 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | - | chr7_4:43347455-43347474 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | + | chr7_4:43347499-43347518 | Msa1155400:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | + | chr7_4:43347501-43347520 | Msa1155400:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | - | chr7_4:43347609-43347628 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | + | chr7_4:43347732-43347751 | Msa1155400:CDS | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | + | chr7_4:43345860-43345879 | Msa1155400:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | + | chr7_4:43345884-43345903 | Msa1155400:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | + | chr7_4:43345951-43345970 | Msa1155400:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | - | chr7_4:43346168-43346187 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | + | chr7_4:43346165-43346184 | Msa1155400:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | + | chr7_4:43346243-43346262 | Msa1155400:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | + | chr7_4:43346244-43346263 | Msa1155400:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | + | chr7_4:43346430-43346449 | Msa1155400:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | + | chr7_4:43346446-43346465 | Msa1155400:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | + | chr7_4:43346524-43346543 | Msa1155400:CDS | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | + | chr7_4:43346999-43347018 | Msa1155400:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | - | chr7_4:43347041-43347060 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | - | chr7_4:43347415-43347434 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | - | chr7_4:43347416-43347435 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | - | chr7_4:43347417-43347436 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | - | chr7_4:43347455-43347474 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | + | chr7_4:43347499-43347518 | Msa1155400:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | + | chr7_4:43347501-43347520 | Msa1155400:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | - | chr7_4:43347609-43347628 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | + | chr7_4:43347732-43347751 | Msa1155400:CDS | 35.0% | |
| CTTAAAATGCACTCACTGCA+AGG | + | chr7_4:43345950-43345969 | Msa1155400:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | + | chr7_4:43345962-43345981 | Msa1155400:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | + | chr7_4:43346472-43346491 | Msa1155400:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | + | chr7_4:43346476-43346495 | Msa1155400:CDS | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | - | chr7_4:43347028-43347047 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | + | chr7_4:43347527-43347546 | Msa1155400:CDS | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | - | chr7_4:43347570-43347589 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | - | chr7_4:43347573-43347592 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | + | chr7_4:43347628-43347647 | Msa1155400:CDS | 40.0% |
| CTTAAAATGCACTCACTGCA+AGG | + | chr7_4:43345950-43345969 | Msa1155400:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | + | chr7_4:43345962-43345981 | Msa1155400:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | + | chr7_4:43346472-43346491 | Msa1155400:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | + | chr7_4:43346476-43346495 | Msa1155400:CDS | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | - | chr7_4:43347028-43347047 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | + | chr7_4:43347527-43347546 | Msa1155400:CDS | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | - | chr7_4:43347570-43347589 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | - | chr7_4:43347573-43347592 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | + | chr7_4:43347628-43347647 | Msa1155400:CDS | 40.0% |
| AGTTTGGTAGGGCCATAGTA+TGG | + | chr7_4:43346177-43346196 | Msa1155400:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | - | chr7_4:43346505-43346524 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | - | chr7_4:43347029-43347048 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | + | chr7_4:43347031-43347050 | Msa1155400:CDS | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | - | chr7_4:43347349-43347368 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | - | chr7_4:43347408-43347427 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | - | chr7_4:43347409-43347428 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | - | chr7_4:43347534-43347553 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | + | chr7_4:43347538-43347557 | Msa1155400:CDS | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | + | chr7_4:43347580-43347599 | Msa1155400:CDS | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | + | chr7_4:43347738-43347757 | Msa1155400:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | + | chr7_4:43347756-43347775 | Msa1155400:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | + | chr7_4:43346177-43346196 | Msa1155400:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | - | chr7_4:43346505-43346524 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | - | chr7_4:43347029-43347048 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | + | chr7_4:43347031-43347050 | Msa1155400:CDS | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | - | chr7_4:43347349-43347368 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | - | chr7_4:43347408-43347427 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | - | chr7_4:43347409-43347428 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | - | chr7_4:43347534-43347553 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | + | chr7_4:43347538-43347557 | Msa1155400:CDS | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | + | chr7_4:43347580-43347599 | Msa1155400:CDS | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | + | chr7_4:43347738-43347757 | Msa1155400:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | + | chr7_4:43347756-43347775 | Msa1155400:CDS | 45.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | + | chr7_4:43346867-43346886 | Msa1155400:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | - | chr7_4:43346875-43346894 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | - | chr7_4:43347010-43347029 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | + | chr7_4:43347335-43347354 | Msa1155400:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | + | chr7_4:43347374-43347393 | Msa1155400:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | + | chr7_4:43347375-43347394 | Msa1155400:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | - | chr7_4:43347410-43347429 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | + | chr7_4:43347427-43347446 | Msa1155400:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | + | chr7_4:43347428-43347447 | Msa1155400:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | + | chr7_4:43347429-43347448 | Msa1155400:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | + | chr7_4:43347541-43347560 | Msa1155400:CDS | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | - | chr7_4:43347587-43347606 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | - | chr7_4:43347709-43347728 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | + | chr7_4:43347708-43347727 | Msa1155400:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | - | chr7_4:43347742-43347761 | None:intergenic | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | + | chr7_4:43346867-43346886 | Msa1155400:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | - | chr7_4:43346875-43346894 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | - | chr7_4:43347010-43347029 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | + | chr7_4:43347335-43347354 | Msa1155400:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | + | chr7_4:43347374-43347393 | Msa1155400:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | + | chr7_4:43347375-43347394 | Msa1155400:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | - | chr7_4:43347410-43347429 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | + | chr7_4:43347427-43347446 | Msa1155400:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | + | chr7_4:43347428-43347447 | Msa1155400:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | + | chr7_4:43347429-43347448 | Msa1155400:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | + | chr7_4:43347541-43347560 | Msa1155400:CDS | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | - | chr7_4:43347587-43347606 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | - | chr7_4:43347709-43347728 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | + | chr7_4:43347708-43347727 | Msa1155400:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | - | chr7_4:43347742-43347761 | None:intergenic | 50.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | + | chr7_4:43346878-43346897 | Msa1155400:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | + | chr7_4:43347376-43347395 | Msa1155400:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | - | chr7_4:43347703-43347722 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | + | chr7_4:43347702-43347721 | Msa1155400:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | - | chr7_4:43347706-43347725 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | - | chr7_4:43347715-43347734 | None:intergenic | 55.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | + | chr7_4:43346878-43346897 | Msa1155400:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | + | chr7_4:43347376-43347395 | Msa1155400:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | - | chr7_4:43347703-43347722 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | + | chr7_4:43347702-43347721 | Msa1155400:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | - | chr7_4:43347706-43347725 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | - | chr7_4:43347715-43347734 | None:intergenic | 55.0% | |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | - | chr7_4:43347698-43347717 | None:intergenic | 60.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | - | chr7_4:43347698-43347717 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43345849 | 43347792 | 43345849 | ID=Msa1155400;Name=Msa1155400 |
| chr7_4 | mRNA | 43345849 | 43347792 | 43345849 | ID=Msa1155400-mRNA-1;Parent=Msa1155400;Name=Msa1155400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|212 |
| chr7_4 | exon | 43345849 | 43345983 | 43345849 | ID=Msa1155400-mRNA-1:exon:10851;Parent=Msa1155400-mRNA-1 |
| chr7_4 | exon | 43346473 | 43346569 | 43346473 | ID=Msa1155400-mRNA-1:exon:10852;Parent=Msa1155400-mRNA-1 |
| chr7_4 | exon | 43346728 | 43346759 | 43346728 | ID=Msa1155400-mRNA-1:exon:10853;Parent=Msa1155400-mRNA-1 |
| chr7_4 | exon | 43347016 | 43347105 | 43347016 | ID=Msa1155400-mRNA-1:exon:10854;Parent=Msa1155400-mRNA-1 |
| chr7_4 | exon | 43347508 | 43347792 | 43347508 | ID=Msa1155400-mRNA-1:exon:10855;Parent=Msa1155400-mRNA-1 |
| chr7_4 | CDS | 43345849 | 43345983 | 43345849 | ID=Msa1155400-mRNA-1:cds;Parent=Msa1155400-mRNA-1 |
| chr7_4 | CDS | 43346473 | 43346569 | 43346473 | ID=Msa1155400-mRNA-1:cds;Parent=Msa1155400-mRNA-1 |
| chr7_4 | CDS | 43346728 | 43346759 | 43346728 | ID=Msa1155400-mRNA-1:cds;Parent=Msa1155400-mRNA-1 |
| chr7_4 | CDS | 43347016 | 43347105 | 43347016 | ID=Msa1155400-mRNA-1:cds;Parent=Msa1155400-mRNA-1 |
| chr7_4 | CDS | 43347508 | 43347792 | 43347508 | ID=Msa1155400-mRNA-1:cds;Parent=Msa1155400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
