Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155490 | XP_003623892.1 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.17e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155490 | sp|O80839|PLI2A_ARATH | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.97e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155490 | G7L3J0 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 5.59e-152 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1155490 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066630 | Msa1155490 | 0.901200 | 3.408515e-78 | -8.615850e-47 |
| Msa1155400 | Msa1155490 | 0.907744 | 3.640507e-81 | -8.615850e-47 |
| Msa1155490 | Msa1155870 | 0.919977 | 2.289479e-87 | -8.615850e-47 |
| Msa1155490 | Msa1305370 | 0.913892 | 3.631293e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155490 | MtrunA17_Chr7g0247111 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.08e-155 | 429 |
| Msa1155490 | MtrunA17_Chr8g0349391 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 8.71e-111 | 315 |
| Msa1155490 | MtrunA17_Chr3g0113051 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 4.84e-86 | 252 |
| Msa1155490 | MtrunA17_Chr8g0386501 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 9.21e-74 | 222 |
| Msa1155490 | MtrunA17_Chr1g0152431 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.43e-60 | 188 |
| Msa1155490 | MtrunA17_Chr4g0059371 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.00e-56 | 176 |
| Msa1155490 | MtrunA17_Chr4g0059371 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 5.72e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155490 | AT2G45800.1 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 4.03e-106 | 305 |
| Msa1155490 | AT1G01780.1 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.97e-106 | 303 |
| Msa1155490 | AT3G61230.1 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.83e-104 | 300 |
| Msa1155490 | AT2G39900.1 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.19e-90 | 263 |
| Msa1155490 | AT3G55770.3 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155490 | AT3G55770.5 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155490 | AT3G55770.2 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155490 | AT3G55770.1 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.54e-89 | 261 |
| Msa1155490 | AT3G55770.7 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.34e-81 | 242 |
| Msa1155490 | AT2G45800.2 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 5.19e-75 | 225 |
| Msa1155490 | AT2G45800.2 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.80e-22 | 89.7 |
| Msa1155490 | AT1G10200.1 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.17e-61 | 190 |
| Msa1155490 | AT3G55770.4 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.77e-56 | 175 |
| Msa1155490 | AT3G55770.4 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.98e-23 | 90.5 |
| Msa1155490 | AT3G55770.6 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 2.04e-53 | 168 |
| Msa1155490 | AT3G55770.6 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.29e-23 | 90.9 |
| Msa1155490 | AT1G10200.2 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.94e-40 | 134 |
| Msa1155490 | AT1G10200.2 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.24e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7_4:+43448243 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7_4:+43447021 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7_4:+43448244 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7_4:+43447054 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7_4:-43448022 | Msa1155490:intron |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7_4:-43447180 | Msa1155490:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7_4:+43448258 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7_4:-43447022 | Msa1155490:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7_4:-43447233 | Msa1155490:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7_4:+43447060 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7_4:-43447676 | Msa1155490:intron |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7_4:+43447048 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7_4:+43447154 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7_4:-43448853 | Msa1155490:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7_4:-43448212 | Msa1155490:intron |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7_4:-43447265 | Msa1155490:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 7_4:+43447734 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7_4:-43447222 | Msa1155490:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7_4:-43448288 | Msa1155490:CDS |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7_4:-43448809 | Msa1155490:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7_4:+43447057 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7_4:-43447259 | Msa1155490:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7_4:+43447176 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7_4:+43447190 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7_4:-43447261 | Msa1155490:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7_4:-43447260 | Msa1155490:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7_4:+43448245 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 7_4:+43447735 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7_4:-43448919 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7_4:-43448797 | Msa1155490:intron |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7_4:+43447065 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7_4:-43448875 | Msa1155490:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7_4:-43447058 | Msa1155490:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7_4:-43447052 | Msa1155490:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 7_4:+43447722 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7_4:-43448808 | Msa1155490:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7_4:-43448284 | Msa1155490:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7_4:-43447219 | Msa1155490:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 7_4:-43447729 | Msa1155490:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7_4:-43448899 | Msa1155490:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7_4:-43447004 | Msa1155490:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7_4:-43447028 | Msa1155490:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7_4:+43447193 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7_4:+43447229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr7_4:43447491-43447510 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr7_4:43448070-43448089 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr7_4:43448388-43448407 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | + | chr7_4:43447491-43447510 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | + | chr7_4:43448070-43448089 | None:intergenic | 10.0% |
| !! | TATATTAGTTGAAATTTAAA+TGG | + | chr7_4:43448388-43448407 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr7_4:43447250-43447269 | Msa1155490:CDS | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | - | chr7_4:43447971-43447990 | Msa1155490:intron | 15.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | - | chr7_4:43447250-43447269 | Msa1155490:CDS | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | - | chr7_4:43447971-43447990 | Msa1155490:intron | 15.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr7_4:43447270-43447289 | Msa1155490:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr7_4:43447279-43447298 | Msa1155490:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr7_4:43447484-43447503 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr7_4:43447750-43447769 | Msa1155490:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr7_4:43447831-43447850 | Msa1155490:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr7_4:43447920-43447939 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr7_4:43448044-43448063 | Msa1155490:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | - | chr7_4:43447270-43447289 | Msa1155490:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | - | chr7_4:43447279-43447298 | Msa1155490:intron | 20.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | + | chr7_4:43447484-43447503 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | - | chr7_4:43447750-43447769 | Msa1155490:intron | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | - | chr7_4:43447831-43447850 | Msa1155490:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | + | chr7_4:43447920-43447939 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | - | chr7_4:43448044-43448063 | Msa1155490:intron | 20.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr7_4:43447077-43447096 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr7_4:43447082-43447101 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr7_4:43447173-43447192 | Msa1155490:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr7_4:43447302-43447321 | Msa1155490:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr7_4:43447658-43447677 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr7_4:43447659-43447678 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr7_4:43447842-43447861 | Msa1155490:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr7_4:43447925-43447944 | Msa1155490:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr7_4:43448047-43448066 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr7_4:43448099-43448118 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr7_4:43448315-43448334 | None:intergenic | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | + | chr7_4:43447077-43447096 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | + | chr7_4:43447082-43447101 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | - | chr7_4:43447173-43447192 | Msa1155490:CDS | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | - | chr7_4:43447302-43447321 | Msa1155490:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | + | chr7_4:43447658-43447677 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | + | chr7_4:43447659-43447678 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | - | chr7_4:43447842-43447861 | Msa1155490:intron | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | - | chr7_4:43447925-43447944 | Msa1155490:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | + | chr7_4:43448047-43448066 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | + | chr7_4:43448099-43448118 | None:intergenic | 25.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | + | chr7_4:43448315-43448334 | None:intergenic | 25.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr7_4:43447047-43447066 | Msa1155490:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr7_4:43447301-43447320 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr7_4:43447307-43447326 | Msa1155490:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr7_4:43447333-43447352 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr7_4:43447571-43447590 | Msa1155490:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr7_4:43447660-43447679 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr7_4:43447657-43447676 | Msa1155490:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr7_4:43447688-43447707 | Msa1155490:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr7_4:43447804-43447823 | Msa1155490:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr7_4:43447878-43447897 | Msa1155490:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr7_4:43447916-43447935 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr7_4:43448218-43448237 | Msa1155490:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr7_4:43448224-43448243 | Msa1155490:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr7_4:43448237-43448256 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr7_4:43448348-43448367 | Msa1155490:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr7_4:43448362-43448381 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr7_4:43448412-43448431 | Msa1155490:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr7_4:43448413-43448432 | Msa1155490:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | + | chr7_4:43448452-43448471 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | - | chr7_4:43448455-43448474 | Msa1155490:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr7_4:43448497-43448516 | Msa1155490:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr7_4:43448505-43448524 | Msa1155490:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr7_4:43448506-43448525 | Msa1155490:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr7_4:43448507-43448526 | Msa1155490:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr7_4:43448635-43448654 | Msa1155490:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr7_4:43448640-43448659 | Msa1155490:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr7_4:43448761-43448780 | Msa1155490:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | - | chr7_4:43447047-43447066 | Msa1155490:CDS | 30.0% |
| ACTTGTGTATAAAGGATATC+CGG | + | chr7_4:43447301-43447320 | None:intergenic | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | - | chr7_4:43447307-43447326 | Msa1155490:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | + | chr7_4:43447333-43447352 | None:intergenic | 30.0% |
| TCTAAACTTGTGTCTAAGTT+GGG | - | chr7_4:43447571-43447590 | Msa1155490:intron | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | + | chr7_4:43447660-43447679 | None:intergenic | 30.0% | |
| ! | CCATTTTGAACAACTTTTCA+AGG | - | chr7_4:43447657-43447676 | Msa1155490:intron | 30.0% |
| AATTTCAGCAAGAACTTTCA+AGG | - | chr7_4:43447688-43447707 | Msa1155490:CDS | 30.0% | |
| !! | ACTTGCACTTTGTATTGATT+TGG | - | chr7_4:43447804-43447823 | Msa1155490:intron | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | - | chr7_4:43447878-43447897 | Msa1155490:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | + | chr7_4:43447916-43447935 | None:intergenic | 30.0% |
| CACAAAAACTGTTTATCCTT+TGG | - | chr7_4:43448218-43448237 | Msa1155490:CDS | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | - | chr7_4:43448224-43448243 | Msa1155490:CDS | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | + | chr7_4:43448237-43448256 | None:intergenic | 30.0% |
| AGTAATCTCAACCATTCATA+AGG | - | chr7_4:43448348-43448367 | Msa1155490:intron | 30.0% | |
| ! | TCGATTGATTTCCTTATGAA+TGG | + | chr7_4:43448362-43448381 | None:intergenic | 30.0% |
| ACTCGATTGAAAATAGTGTT+AGG | - | chr7_4:43448412-43448431 | Msa1155490:intron | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | - | chr7_4:43448413-43448432 | Msa1155490:intron | 30.0% | |
| ! | AAAATAAAGAGCGTAGTGAA+TGG | + | chr7_4:43448452-43448471 | None:intergenic | 30.0% |
| !!! | ACTACGCTCTTTATTTTTTG+TGG | - | chr7_4:43448455-43448474 | Msa1155490:intron | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | - | chr7_4:43448497-43448516 | Msa1155490:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr7_4:43448505-43448524 | Msa1155490:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr7_4:43448506-43448525 | Msa1155490:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr7_4:43448507-43448526 | Msa1155490:intron | 30.0% |
| CTTTGTGAAATAGATGTCAT+TGG | - | chr7_4:43448635-43448654 | Msa1155490:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | - | chr7_4:43448640-43448659 | Msa1155490:intron | 30.0% | |
| ! | TCATTTTCAACAGCTTTTCA+TGG | - | chr7_4:43448761-43448780 | Msa1155490:intron | 30.0% |
| AGGAACTCTTGATAAATGCA+AGG | - | chr7_4:43447001-43447020 | Msa1155490:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr7_4:43447025-43447044 | Msa1155490:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr7_4:43447092-43447111 | Msa1155490:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr7_4:43447309-43447328 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr7_4:43447306-43447325 | Msa1155490:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr7_4:43447384-43447403 | Msa1155490:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr7_4:43447385-43447404 | Msa1155490:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr7_4:43447570-43447589 | Msa1155490:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr7_4:43447586-43447605 | Msa1155490:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr7_4:43447664-43447683 | Msa1155490:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr7_4:43448139-43448158 | Msa1155490:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr7_4:43448181-43448200 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | + | chr7_4:43448555-43448574 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr7_4:43448556-43448575 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr7_4:43448557-43448576 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr7_4:43448595-43448614 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr7_4:43448639-43448658 | Msa1155490:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr7_4:43448641-43448660 | Msa1155490:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr7_4:43448749-43448768 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr7_4:43448872-43448891 | Msa1155490:CDS | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | - | chr7_4:43447001-43447020 | Msa1155490:CDS | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | - | chr7_4:43447025-43447044 | Msa1155490:CDS | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | - | chr7_4:43447092-43447111 | Msa1155490:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | + | chr7_4:43447309-43447328 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | - | chr7_4:43447306-43447325 | Msa1155490:intron | 35.0% | |
| ! | TTAACGTTCGATTTGCACAT+AGG | - | chr7_4:43447384-43447403 | Msa1155490:intron | 35.0% |
| ! | TAACGTTCGATTTGCACATA+GGG | - | chr7_4:43447385-43447404 | Msa1155490:intron | 35.0% |
| GTCTAAACTTGTGTCTAAGT+TGG | - | chr7_4:43447570-43447589 | Msa1155490:intron | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | - | chr7_4:43447586-43447605 | Msa1155490:intron | 35.0% | |
| !! | GAACAACTTTTCAAGGAATC+TGG | - | chr7_4:43447664-43447683 | Msa1155490:intron | 35.0% |
| TTGTTCTTCCTTTACAGAAC+AGG | - | chr7_4:43448139-43448158 | Msa1155490:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | + | chr7_4:43448181-43448200 | None:intergenic | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | + | chr7_4:43448555-43448574 | None:intergenic | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | + | chr7_4:43448556-43448575 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | + | chr7_4:43448557-43448576 | None:intergenic | 35.0% | |
| !! | GTTATAAAGAGCGTTGATAG+CGG | + | chr7_4:43448595-43448614 | None:intergenic | 35.0% |
| GTGAAATAGATGTCATTGGA+AGG | - | chr7_4:43448639-43448658 | Msa1155490:intron | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | - | chr7_4:43448641-43448660 | Msa1155490:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | + | chr7_4:43448749-43448768 | None:intergenic | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | - | chr7_4:43448872-43448891 | Msa1155490:CDS | 35.0% | |
| CTTAAAATGCACTCACTGCA+AGG | - | chr7_4:43447091-43447110 | Msa1155490:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr7_4:43447103-43447122 | Msa1155490:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr7_4:43447612-43447631 | Msa1155490:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr7_4:43447616-43447635 | Msa1155490:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr7_4:43448168-43448187 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr7_4:43448667-43448686 | Msa1155490:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr7_4:43448710-43448729 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr7_4:43448713-43448732 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr7_4:43448768-43448787 | Msa1155490:intron | 40.0% |
| CTTAAAATGCACTCACTGCA+AGG | - | chr7_4:43447091-43447110 | Msa1155490:CDS | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | - | chr7_4:43447103-43447122 | Msa1155490:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | - | chr7_4:43447612-43447631 | Msa1155490:intron | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | - | chr7_4:43447616-43447635 | Msa1155490:intron | 40.0% | |
| AACATAGAGGAGAGTCTACT+GGG | + | chr7_4:43448168-43448187 | None:intergenic | 40.0% | |
| ! | GTTACCACAAGACTTGCTTT+AGG | - | chr7_4:43448667-43448686 | Msa1155490:intron | 40.0% |
| CATAGGAAGAATGTGTAAGG+TGG | + | chr7_4:43448710-43448729 | None:intergenic | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | + | chr7_4:43448713-43448732 | None:intergenic | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | - | chr7_4:43448768-43448787 | Msa1155490:intron | 40.0% |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr7_4:43447318-43447337 | Msa1155490:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr7_4:43447645-43447664 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr7_4:43448169-43448188 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr7_4:43448171-43448190 | Msa1155490:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr7_4:43448489-43448508 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr7_4:43448548-43448567 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr7_4:43448549-43448568 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr7_4:43448674-43448693 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr7_4:43448678-43448697 | Msa1155490:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr7_4:43448720-43448739 | Msa1155490:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr7_4:43448878-43448897 | Msa1155490:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr7_4:43448896-43448915 | Msa1155490:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | - | chr7_4:43447318-43447337 | Msa1155490:intron | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | + | chr7_4:43447645-43447664 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | + | chr7_4:43448169-43448188 | None:intergenic | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | - | chr7_4:43448171-43448190 | Msa1155490:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | + | chr7_4:43448489-43448508 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | + | chr7_4:43448548-43448567 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | + | chr7_4:43448549-43448568 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | + | chr7_4:43448674-43448693 | None:intergenic | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | - | chr7_4:43448678-43448697 | Msa1155490:intron | 45.0% |
| TCTTCCTATGCTGCACTAGA+TGG | - | chr7_4:43448720-43448739 | Msa1155490:intron | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | - | chr7_4:43448878-43448897 | Msa1155490:CDS | 45.0% | |
| ACAGGCAGAAGAAAAGTCTG+AGG | - | chr7_4:43448896-43448915 | Msa1155490:CDS | 45.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr7_4:43448007-43448026 | Msa1155490:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr7_4:43448015-43448034 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr7_4:43448150-43448169 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr7_4:43448475-43448494 | Msa1155490:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr7_4:43448514-43448533 | Msa1155490:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr7_4:43448515-43448534 | Msa1155490:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr7_4:43448550-43448569 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr7_4:43448567-43448586 | Msa1155490:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr7_4:43448568-43448587 | Msa1155490:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr7_4:43448569-43448588 | Msa1155490:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr7_4:43448681-43448700 | Msa1155490:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr7_4:43448727-43448746 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr7_4:43448849-43448868 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr7_4:43448848-43448867 | Msa1155490:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr7_4:43448882-43448901 | None:intergenic | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | - | chr7_4:43448007-43448026 | Msa1155490:intron | 50.0% | |
| ! | CAACACCGCATCTGCGATTT+TGG | + | chr7_4:43448015-43448034 | None:intergenic | 50.0% |
| CTGGGTGTCCTGTTCTGTAA+AGG | + | chr7_4:43448150-43448169 | None:intergenic | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | - | chr7_4:43448475-43448494 | Msa1155490:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | - | chr7_4:43448514-43448533 | Msa1155490:intron | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | - | chr7_4:43448515-43448534 | Msa1155490:intron | 50.0% |
| GCGTAATTTATGCAGGGGCA+AGG | + | chr7_4:43448550-43448569 | None:intergenic | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | - | chr7_4:43448567-43448586 | Msa1155490:intron | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | - | chr7_4:43448568-43448587 | Msa1155490:intron | 50.0% | |
| CAATGTCAGCTAAGCTCACG+GGG | - | chr7_4:43448569-43448588 | Msa1155490:intron | 50.0% | |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | - | chr7_4:43448681-43448700 | Msa1155490:intron | 50.0% |
| GACACCATCTAGTGCAGCAT+AGG | + | chr7_4:43448727-43448746 | None:intergenic | 50.0% | |
| ! | TCATCCTCATCAGCTGGTTC+AGG | + | chr7_4:43448849-43448868 | None:intergenic | 50.0% |
| TGAACCAGCTGATGAGGATG+AGG | - | chr7_4:43448848-43448867 | Msa1155490:CDS | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | + | chr7_4:43448882-43448901 | None:intergenic | 50.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr7_4:43448018-43448037 | Msa1155490:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr7_4:43448516-43448535 | Msa1155490:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr7_4:43448843-43448862 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr7_4:43448842-43448861 | Msa1155490:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr7_4:43448846-43448865 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr7_4:43448855-43448874 | None:intergenic | 55.0% | |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | - | chr7_4:43448018-43448037 | Msa1155490:intron | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | - | chr7_4:43448516-43448535 | Msa1155490:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | + | chr7_4:43448843-43448862 | None:intergenic | 55.0% |
| ACCACCTGAACCAGCTGATG+AGG | - | chr7_4:43448842-43448861 | Msa1155490:CDS | 55.0% | |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | + | chr7_4:43448846-43448865 | None:intergenic | 55.0% |
| GATGCCTCATCCTCATCAGC+TGG | + | chr7_4:43448855-43448874 | None:intergenic | 55.0% | |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr7_4:43448838-43448857 | None:intergenic | 60.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | + | chr7_4:43448838-43448857 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43446990 | 43448932 | 43446990 | ID=Msa1155490;Name=Msa1155490 |
| chr7_4 | mRNA | 43446990 | 43448932 | 43446990 | ID=Msa1155490-mRNA-1;Parent=Msa1155490;Name=Msa1155490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|212 |
| chr7_4 | exon | 43448798 | 43448932 | 43448798 | ID=Msa1155490-mRNA-1:exon:10927;Parent=Msa1155490-mRNA-1 |
| chr7_4 | exon | 43448213 | 43448309 | 43448213 | ID=Msa1155490-mRNA-1:exon:10926;Parent=Msa1155490-mRNA-1 |
| chr7_4 | exon | 43448023 | 43448054 | 43448023 | ID=Msa1155490-mRNA-1:exon:10925;Parent=Msa1155490-mRNA-1 |
| chr7_4 | exon | 43447677 | 43447766 | 43447677 | ID=Msa1155490-mRNA-1:exon:10924;Parent=Msa1155490-mRNA-1 |
| chr7_4 | exon | 43446990 | 43447274 | 43446990 | ID=Msa1155490-mRNA-1:exon:10923;Parent=Msa1155490-mRNA-1 |
| chr7_4 | CDS | 43448798 | 43448932 | 43448798 | ID=Msa1155490-mRNA-1:cds;Parent=Msa1155490-mRNA-1 |
| chr7_4 | CDS | 43448213 | 43448309 | 43448213 | ID=Msa1155490-mRNA-1:cds;Parent=Msa1155490-mRNA-1 |
| chr7_4 | CDS | 43448023 | 43448054 | 43448023 | ID=Msa1155490-mRNA-1:cds;Parent=Msa1155490-mRNA-1 |
| chr7_4 | CDS | 43447677 | 43447766 | 43447677 | ID=Msa1155490-mRNA-1:cds;Parent=Msa1155490-mRNA-1 |
| chr7_4 | CDS | 43446990 | 43447274 | 43446990 | ID=Msa1155490-mRNA-1:cds;Parent=Msa1155490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
