AlfalfaGEDB | Msa1067990

M. sativa cultivar zhongmu-4 / Msa1067990

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF01169.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067990	ABN05684.1	98.239	284	5	0	1	284	1	284	0.0	561

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067990	sp\|Q2R4J1\|GDT13_ORYSJ	78.244	262	53	1	26	283	18	279	9.17e-136	387

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067990	A2Q167	98.239	284	5	0	1	284	1	284	0.0	561

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0622470	Msa1067990	0.830160	3.434409e-55	-8.615850e-47
Msa1028870	Msa1067990	0.873525	1.374140e-67	-8.615850e-47
Msa1067990	Msa1121950	0.838282	3.154830e-57	-8.615850e-47
Msa1067990	Msa1257720	0.800784	1.225023e-48	-8.615850e-47
Msa1067990	Msa1329160	0.809296	2.030112e-50	-8.615850e-47
Msa1067990	Msa1450520	0.804060	2.589366e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067990	MtrunA17_Chr7g0249231	98.239	284	5	0	1	284	1	284	0.0	561
Msa1067990	MtrunA17_Chr1g0210221	40.351	228	109	3	74	281	6	226	1.00e-51	169
Msa1067990	MtrunA17_Chr1g0169451	41.232	211	117	2	76	279	152	362	1.42e-41	147
Msa1067990	MtrunA17_Chr5g0397071	36.019	211	114	5	82	279	145	347	2.14e-28	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067990	AT5G36290.1	73.852	283	62	5	13	283	11	293	2.42e-132	377
Msa1067990	AT5G36290.2	73.852	283	62	5	13	283	11	293	2.42e-132	377
Msa1067990	AT1G68650.1	43.946	223	111	2	72	281	4	225	9.74e-56	179
Msa1067990	AT1G25520.1	41.991	231	100	2	72	278	4	224	3.08e-55	178
Msa1067990	AT4G13590.1	40.741	216	111	4	76	279	146	356	1.23e-41	147
Msa1067990	AT4G13590.2	40.741	216	111	4	76	279	146	356	1.36e-41	147
Msa1067990	AT1G64150.1	34.559	272	143	8	27	274	101	361	5.79e-25	102

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Find 108 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGCAACAACCGTGTT+TGG	0.345145	7_2:+62980598	Msa1067990:five_prime_UTR
AAGAAGAAAATTAGAAAGTA+AGG	0.349891	7_2:-62980730	None:intergenic
AAGGGAAAACTTCATTTCGG+CGG	0.657157	7_2:+62983347	Msa1067990:CDS
AAGTAAGGTAGATCCGGTAG+TGG	0.578706	7_2:-62980715	None:intergenic
AAGTAGCAACAACCGTGTTT+GGG	0.359801	7_2:+62980599	Msa1067990:five_prime_UTR
AATATGTACCTCAGTGGCAG+TGG	0.565729	7_2:+62983770	Msa1067990:CDS
AATGAAGCTGACCTGAGCGA+AGG	0.623925	7_2:-62980956	None:intergenic
AATGCAATCGGAGTAGCAGC+TGG	0.484261	7_2:+62983729	Msa1067990:CDS
AATTAGGATCGAACTTTCCT+AGG	0.363531	7_2:-62984026	None:intergenic
AATTCCAAAATCCAAAAGGA+AGG	0.552541	7_2:-62984179	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGAAAGTAAGGTAGATC+CGG	-	chr7_2:62980724-62980743	None:intergenic	30.0%
TATAAACAAACACATTACGG+CGG	-	chr7_2:62981017-62981036	None:intergenic	30.0%
GAATGATATAGAGAATGGTT+CGG	+	chr7_2:62981201-62981220	Msa1067990:CDS	30.0%
TTTATGGAAAGAAAACGACT+AGG	+	chr7_2:62981540-62981559	Msa1067990:intron	30.0%
AAGTTCTTATGAGCTTGTAA+AGG	+	chr7_2:62981807-62981826	Msa1067990:intron	30.0%
TCTATTCTATGTTTGCGTTA+TGG	+	chr7_2:62982063-62982082	Msa1067990:intron	30.0%
ATTAATGAGAACAGAAAAGC+AGG	-	chr7_2:62982252-62982271	None:intergenic	30.0%
GTTATTTGTTTGTGTCCATT+AGG	+	chr7_2:62982374-62982393	Msa1067990:intron	30.0%
GCGTATGACAAAAAAATGAT+AGG	-	chr7_2:62982765-62982784	None:intergenic	30.0%
ATCTTCACAGAAGAAAGAAA+TGG	+	chr7_2:62982845-62982864	Msa1067990:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	62980460	62984337	62980460	ID=Msa1067990;Name=Msa1067990
chr7_2	mRNA	62980460	62984337	62980460	ID=Msa1067990-mRNA-1;Parent=Msa1067990;Name=Msa1067990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=426\|1\|1\|1\|1\|1\|9\|432\|284
chr7_2	exon	62980460	62980966	62980460	ID=Msa1067990-mRNA-1:exon:12846;Parent=Msa1067990-mRNA-1
chr7_2	exon	62981044	62981109	62981044	ID=Msa1067990-mRNA-1:exon:12847;Parent=Msa1067990-mRNA-1
chr7_2	exon	62981193	62981306	62981193	ID=Msa1067990-mRNA-1:exon:12848;Parent=Msa1067990-mRNA-1
chr7_2	exon	62982116	62982214	62982116	ID=Msa1067990-mRNA-1:exon:12849;Parent=Msa1067990-mRNA-1
chr7_2	exon	62982396	62982468	62982396	ID=Msa1067990-mRNA-1:exon:12850;Parent=Msa1067990-mRNA-1
chr7_2	exon	62982787	62982872	62982787	ID=Msa1067990-mRNA-1:exon:12851;Parent=Msa1067990-mRNA-1
chr7_2	exon	62983322	62983405	62983322	ID=Msa1067990-mRNA-1:exon:12852;Parent=Msa1067990-mRNA-1
chr7_2	exon	62983486	62983545	62983486	ID=Msa1067990-mRNA-1:exon:12853;Parent=Msa1067990-mRNA-1
chr7_2	exon	62983714	62984337	62983714	ID=Msa1067990-mRNA-1:exon:12854;Parent=Msa1067990-mRNA-1
chr7_2	five_prime_UTR	62980460	62980885	62980460	ID=Msa1067990-mRNA-1:five_prime_utr;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62980886	62980966	62980886	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62981044	62981109	62981044	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62981193	62981306	62981193	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62982116	62982214	62982116	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62982396	62982468	62982396	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62982787	62982872	62982787	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62983322	62983405	62983322	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62983486	62983545	62983486	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	CDS	62983714	62983905	62983714	ID=Msa1067990-mRNA-1:cds;Parent=Msa1067990-mRNA-1
chr7_2	three_prime_UTR	62983906	62984337	62983906	ID=Msa1067990-mRNA-1:three_prime_utr;Parent=Msa1067990-mRNA-1

Gene Sequence

>Msa1067990

ATGGCACTACGATTCAACATCAATGGAAGAATCACCGTTTTCGTTCTTCTCCTCTGCTTCGTCGTTCAAACCTTCGCTCAGGATTCTCTGGCTCACGACGACAGGCAAGAATCCGGTGGATCTGTGGATCTCGGTCGCCGCGCCAAAGTTGCGTTGAATGATATAGAGAATGGTTCGGTCATTTCTCTTAGCTTGGATTCTTCTGGTGTTGGACTCTTTGATGCATTCTTTGCTAGTTTATCAATGATTCTCGTTAGTGAGATTGGGGATGAGACATTTATTATAGCAGCTCTTATGGCTATGCGTCATCCTAAGTCAATTGTCTTGTCTGGTGCACTAAGTGCCTTGATTATAATGACTGTACTTTCTACAGGACTAGGAAGGATTGTGCCAAATTTGATTTCAAAGAAGCATACAAATAGTGCTGCTACAGTTCTTTATCTTTTCTTCGGGTTACGACTGCTGTACATTGCTTGGAAATCAGATCCAAAATCTTCACAGAAGAAAGAAATGGAAGAAGTTGAAGAAAAACTTGAAGGTGGACAAGGGAAAACTTCATTTCGGCGGTTCTTCTCAAGATTTTGTACACCCATATTTTTAGAGTCTTTTGTTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATTGCGACAATTGCACTGGCAACACATAAAAATGCAATCGGAGTAGCAGCTGGGGCCACCATAGGGCACACAATATGTACCTCAGTGGCAGTGGTGGGAGGAAGCATGCTGGCATCTAGGATTTCCCAACGCTCTGTAGCCACTGTCGGTGGTCTTCTCTTCCTAGGCTTTTCTTTGTCTTCATACTTCTACCCCCCTCTAGATTAA

Protein sequence

>Msa1067990

MALRFNINGRITVFVLLLCFVVQTFAQDSLAHDDRQESGGSVDLGRRAKVALNDIENGSVISLSLDSSGVGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALIIMTVLSTGLGRIVPNLISKKHTNSAATVLYLFFGLRLLYIAWKSDPKSSQKKEMEEVEEKLEGGQGKTSFRRFFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAIGVAAGATIGHTICTSVAVVGGSMLASRISQRSVATVGGLLFLGFSLSSYFYPPLD*