AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072570 MtrunA17_Chr7g0255111 66.022 827 266 6 2 824 1146 1961 0.0 1035
Msa1072570 MtrunA17_Chr7g0255111 23.268 563 297 20 334 821 919 1421 1.08e-21 101
Msa1072570 MtrunA17_Chr5g0414911 66.974 760 237 8 77 824 1116 1873 0.0 954
Msa1072570 MtrunA17_Chr1g0146241 60.255 707 267 7 127 824 1165 1866 0.0 776
Msa1072570 MtrunA17_Chr1g0146241 26.874 707 377 23 142 802 958 1570 2.63e-38 155
Msa1072570 MtrunA17_Chr1g0146241 27.660 517 260 18 57 514 1369 1830 1.55e-22 104
Msa1072570 MtrunA17_Chr1g0146241 27.322 183 101 5 336 511 907 1064 9.19e-13 72.8
Msa1072570 MtrunA17_Chr1g0146241 27.624 181 116 6 619 789 893 1068 2.74e-11 67.8
Msa1072570 MtrunA17_Chr7g0255391 73.554 363 87 4 464 824 2 357 6.10e-179 518
Msa1072570 MtrunA17_Chr7g0255391 31.228 285 164 11 196 467 28 293 7.84e-20 92.0
Msa1072570 MtrunA17_Chr7g0255391 33.099 142 85 5 142 279 218 353 1.04e-11 67.4
Msa1072570 MtrunA17_Chr7g0255401 52.266 331 150 5 127 451 1097 1425 1.79e-84 295
Msa1072570 MtrunA17_Chr7g0255401 25.616 609 331 18 142 723 894 1407 6.09e-35 144
Msa1072570 MtrunA17_Chr7g0255401 25.263 190 98 4 334 511 843 1000 1.76e-11 68.2
Msa1072570 MtrunA17_Chr7g0255401 26.136 176 121 5 619 788 831 1003 3.08e-11 67.4
Msa1072570 MtrunA17_Chr8g0359891 28.327 759 452 23 92 788 378 1106 4.52e-55 207
Msa1072570 MtrunA17_Chr8g0359891 32.071 396 237 10 92 470 1219 1599 1.07e-38 156
Msa1072570 MtrunA17_Chr8g0359891 25.483 828 425 30 56 817 1952 2653 3.21e-36 148
Msa1072570 MtrunA17_Chr8g0359891 26.466 699 389 28 142 793 166 786 1.42e-34 143
Msa1072570 MtrunA17_Chr8g0359891 23.389 838 501 26 10 793 877 1627 2.26e-34 142
Msa1072570 MtrunA17_Chr8g0359891 25.246 812 434 36 31 793 1436 2123 1.19e-31 134
Msa1072570 MtrunA17_Chr8g0359891 23.678 908 469 37 31 819 595 1397 3.34e-25 113
Msa1072570 MtrunA17_Chr8g0359891 23.956 551 284 18 57 569 2476 2929 1.09e-21 101
Msa1072570 MtrunA17_Chr8g0359891 23.321 536 302 22 303 804 79 539 3.26e-15 80.9
Msa1072570 MtrunA17_Chr1g0172231 26.531 784 421 24 92 817 177 863 2.95e-42 167
Msa1072570 MtrunA17_Chr1g0172231 25.333 825 425 30 57 817 418 1115 4.08e-38 154
Msa1072570 MtrunA17_Chr1g0172231 24.590 671 361 25 182 793 1 585 1.50e-22 104
Msa1072570 MtrunA17_Chr1g0172231 23.590 585 280 19 48 569 918 1398 3.06e-20 96.7
Msa1072570 MtrunA17_Chr1g0163891 26.562 768 428 24 92 805 1356 2041 9.15e-42 166
Msa1072570 MtrunA17_Chr1g0163891 26.247 842 425 36 42 817 2105 2816 2.07e-41 165
Msa1072570 MtrunA17_Chr1g0163891 26.973 697 417 25 142 805 1926 2563 1.01e-40 162
Msa1072570 MtrunA17_Chr1g0163891 22.337 582 285 20 51 569 2622 3099 7.06e-17 86.3
Msa1072570 MtrunA17_Chr1g0163891 22.984 496 274 19 360 819 1111 1534 1.17e-13 75.5
Msa1072570 MtrunA17_Chr1g0163891 29.677 155 103 2 142 296 2969 3117 4.21e-12 70.5
Msa1072570 MtrunA17_Chr1g0163761 25.822 852 437 32 31 817 1562 2283 1.58e-40 162
Msa1072570 MtrunA17_Chr1g0163761 31.095 402 233 10 92 470 1345 1725 4.54e-36 148
Msa1072570 MtrunA17_Chr1g0163761 24.965 713 386 25 142 793 1129 1753 2.49e-34 142
Msa1072570 MtrunA17_Chr1g0163761 23.077 845 453 28 52 804 767 1506 6.90e-26 115
Msa1072570 MtrunA17_Chr1g0163761 23.077 585 277 21 51 569 2089 2566 2.24e-19 94.4
Msa1072570 MtrunA17_Chr1g0172051 25.352 781 447 24 79 805 1846 2544 2.44e-40 161
Msa1072570 MtrunA17_Chr1g0172051 25.229 765 432 22 92 804 1344 2020 5.52e-39 157
Msa1072570 MtrunA17_Chr1g0172051 26.826 712 427 24 142 820 2429 3079 7.06e-39 157
Msa1072570 MtrunA17_Chr1g0172051 25.881 823 418 35 31 788 2076 2771 1.85e-38 155
Msa1072570 MtrunA17_Chr1g0172051 24.751 804 434 31 42 788 1571 2260 8.73e-35 144
Msa1072570 MtrunA17_Chr1g0172051 24.296 568 289 19 51 569 2603 3078 3.21e-20 97.1
Msa1072570 MtrunA17_Chr1g0172051 29.762 420 248 17 367 760 806 1204 1.81e-17 88.2
Msa1072570 MtrunA17_Chr1g0172051 23.337 827 438 28 54 788 766 1488 1.16e-16 85.5
Msa1072570 MtrunA17_Chr1g0167981 24.188 831 482 29 30 791 996 1747 2.38e-39 158
Msa1072570 MtrunA17_Chr1g0167981 24.456 781 443 27 57 788 2107 2789 1.57e-36 149
Msa1072570 MtrunA17_Chr1g0167981 26.024 757 442 27 92 758 1341 2069 5.86e-36 147
Msa1072570 MtrunA17_Chr1g0167981 24.104 809 422 32 57 791 1582 2272 1.48e-34 143
Msa1072570 MtrunA17_Chr1g0167981 27.803 446 282 17 364 788 800 1226 1.39e-21 101
Msa1072570 MtrunA17_Chr1g0167981 22.523 888 476 32 32 819 744 1519 4.44e-21 99.8
Msa1072570 MtrunA17_Chr1g0167981 23.938 518 272 18 51 518 2611 3056 1.46e-16 85.1
Msa1072570 MtrunA17_Chr1g0167981 22.879 778 470 34 56 758 822 1544 6.16e-12 70.1
Msa1072570 MtrunA17_Chr1g0167981 27.389 157 103 3 127 278 2932 3082 1.61e-11 68.6
Msa1072570 MtrunA17_Chr1g0163791 32.824 393 238 9 92 470 1340 1720 3.32e-39 157
Msa1072570 MtrunA17_Chr1g0163791 25.250 701 399 22 142 793 1124 1748 9.47e-36 146
Msa1072570 MtrunA17_Chr1g0163791 22.562 523 295 17 333 819 1070 1518 9.69e-15 79.0
Msa1072570 MtrunA17_Chr1g0174511 31.156 398 238 9 92 470 1340 1720 1.33e-38 155
Msa1072570 MtrunA17_Chr1g0174511 24.963 669 377 20 142 760 1124 1717 1.20e-32 137
Msa1072570 MtrunA17_Chr1g0174511 22.485 507 283 16 333 804 1070 1501 5.26e-15 79.7
Msa1072570 MtrunA17_Chr1g0163931 26.047 764 466 26 92 820 1342 2041 1.47e-38 155
Msa1072570 MtrunA17_Chr1g0163931 24.932 734 393 26 142 817 1126 1759 2.90e-33 139
Msa1072570 MtrunA17_Chr1g0163931 23.059 863 459 30 54 819 766 1520 6.79e-26 115
Msa1072570 MtrunA17_Chr1g0163931 22.951 671 352 21 10 622 1516 2079 2.75e-16 84.0
Msa1072570 MtrunA17_Chr2g0323691 26.169 791 429 27 92 820 1864 2561 1.89e-38 155
Msa1072570 MtrunA17_Chr2g0323691 31.392 395 245 10 92 472 1343 1725 1.19e-36 150
Msa1072570 MtrunA17_Chr2g0323691 24.910 831 441 36 31 795 1560 2273 3.15e-33 139
Msa1072570 MtrunA17_Chr2g0323691 24.453 822 435 32 57 817 2104 2800 3.36e-32 135
Msa1072570 MtrunA17_Chr2g0323691 23.823 701 409 26 142 793 1127 1751 2.94e-30 129
Msa1072570 MtrunA17_Chr2g0323691 24.000 775 493 26 79 820 2373 3084 1.70e-28 124
Msa1072570 MtrunA17_Chr2g0323691 25.000 452 282 17 367 788 806 1230 5.88e-15 79.7
Msa1072570 MtrunA17_Chr1g0164011 25.884 707 442 22 142 820 1837 2489 4.31e-38 154
Msa1072570 MtrunA17_Chr1g0164011 31.043 393 245 9 92 470 1344 1724 4.26e-36 148
Msa1072570 MtrunA17_Chr1g0164011 25.685 693 406 28 142 793 1128 1752 7.47e-28 121
Msa1072570 MtrunA17_Chr1g0164011 22.879 778 432 27 31 788 1561 2190 2.45e-25 113
Msa1072570 MtrunA17_Chr1g0164011 23.478 575 287 19 51 569 2011 2488 6.12e-22 102
Msa1072570 MtrunA17_Chr1g0164011 23.625 491 266 17 333 788 1074 1490 2.37e-13 74.7
Msa1072570 MtrunA17_Chr1g0170881 25.526 760 478 24 92 820 1341 2043 3.37e-35 145
Msa1072570 MtrunA17_Chr1g0170881 23.984 738 396 25 142 817 1125 1759 1.82e-30 130
Msa1072570 MtrunA17_Chr1g0170881 22.824 850 434 31 61 804 769 1502 1.13e-22 104
Msa1072570 MtrunA17_Chr6g0474571 31.043 393 245 9 92 470 1343 1723 8.65e-35 144
Msa1072570 MtrunA17_Chr6g0474571 26.404 712 368 28 142 788 2166 2786 2.94e-33 139
Msa1072570 MtrunA17_Chr6g0474571 24.432 704 402 23 142 793 1126 1751 5.64e-32 135
Msa1072570 MtrunA17_Chr6g0474571 31.910 398 242 9 92 474 1864 2247 2.03e-30 130
Msa1072570 MtrunA17_Chr6g0474571 28.934 394 255 7 92 472 2384 2765 1.41e-29 127
Msa1072570 MtrunA17_Chr6g0474571 25.181 830 436 34 31 793 1560 2271 6.66e-25 112
Msa1072570 MtrunA17_Chr6g0474571 23.165 613 308 20 26 569 2568 3086 2.06e-17 87.8
Msa1072570 MtrunA17_Chr6g0474571 26.398 447 281 16 367 788 806 1229 2.46e-17 87.8
Msa1072570 MtrunA17_Chr8g0348201 25.331 679 405 28 144 788 574 1184 3.58e-34 141
Msa1072570 MtrunA17_Chr8g0348201 24.060 798 433 29 60 788 776 1469 2.08e-33 139
Msa1072570 MtrunA17_Chr8g0348201 23.767 791 457 28 29 763 213 913 7.99e-32 134
Msa1072570 MtrunA17_Chr8g0348201 26.492 419 247 13 138 518 1078 1473 1.12e-22 104
Msa1072570 MtrunA17_Chr8g0348251 23.940 731 414 23 144 820 126 768 2.50e-32 134
Msa1072570 MtrunA17_Chr8g0348251 28.536 403 217 14 376 760 111 460 8.81e-25 110
Msa1072570 MtrunA17_Chr8g0348251 30.247 162 109 2 95 252 581 742 1.52e-12 71.6
Msa1072570 MtrunA17_Chr1g0163991 28.281 442 263 11 92 498 382 804 3.13e-29 125
Msa1072570 MtrunA17_Chr1g0163991 23.144 687 374 22 142 749 166 777 5.66e-27 118
Msa1072570 MtrunA17_Chr1g0163991 24.164 538 299 19 303 804 79 543 5.72e-19 92.8
Msa1072570 MtrunA17_Chr1g0163991 23.558 416 224 9 142 517 870 1231 4.42e-16 83.2
Msa1072570 MtrunA17_Chr1g0163991 27.885 208 142 3 92 299 1082 1281 1.67e-15 81.3
Msa1072570 MtrunA17_Chr1g0163991 21.838 751 427 26 142 819 597 1260 7.31e-15 79.3
Msa1072570 MtrunA17_Chr2g0313591 23.622 889 472 35 31 820 751 1531 2.26e-27 119
Msa1072570 MtrunA17_Chr2g0313591 27.626 257 174 6 32 283 1286 1535 2.25e-15 80.9
Msa1072570 MtrunA17_Chr2g0313331 25.045 555 297 18 58 569 744 1222 2.53e-26 116
Msa1072570 MtrunA17_Chr2g0313331 22.970 862 469 39 29 820 487 1223 7.34e-21 98.6
Msa1072570 MtrunA17_Chr2g0313331 35.789 190 116 3 92 281 1042 1225 1.10e-20 98.2
Msa1072570 MtrunA17_Chr2g0314301 24.411 807 446 31 58 820 855 1541 3.23e-26 116
Msa1072570 MtrunA17_Chr2g0314301 36.170 141 85 3 141 281 1408 1543 2.99e-16 84.0
Msa1072570 MtrunA17_Chr2g0313461 27.273 473 284 18 368 809 815 1258 7.26e-25 111
Msa1072570 MtrunA17_Chr2g0313461 25.882 510 240 21 22 475 794 1221 4.98e-16 83.2
Msa1072570 MtrunA17_Chr2g0313421 23.540 531 328 16 61 569 165 639 4.39e-23 105
Msa1072570 MtrunA17_Chr2g0313421 23.929 560 320 20 295 820 153 640 7.66e-19 91.7
Msa1072570 MtrunA17_Chr2g0313311 23.729 531 327 16 61 569 1035 1509 5.22e-23 105
Msa1072570 MtrunA17_Chr2g0313311 22.311 874 481 35 31 820 751 1510 3.02e-22 103
Msa1072570 MtrunA17_Chr2g0313351 23.652 575 357 18 18 569 1017 1532 6.51e-23 105
Msa1072570 MtrunA17_Chr2g0313351 22.811 811 439 28 58 820 862 1533 3.88e-21 99.8
Msa1072570 MtrunA17_Chr2g0313481 24.587 484 253 16 128 569 1132 1545 1.25e-21 101
Msa1072570 MtrunA17_Chr2g0313481 24.018 866 500 36 11 820 783 1546 7.47e-21 99.0
Msa1072570 MtrunA17_Chr2g0313541 25.137 549 297 20 61 569 1063 1537 1.13e-20 98.2
Msa1072570 MtrunA17_Chr2g0313541 23.708 561 324 22 295 822 1051 1540 2.11e-19 94.0
Msa1072570 MtrunA17_Chr2g0313541 32.821 195 115 6 92 281 1357 1540 2.46e-16 84.3
Msa1072570 MtrunA17_Chr3g0081941 24.948 477 279 21 368 802 807 1246 8.34e-20 95.5
Msa1072570 MtrunA17_Chr3g0081941 21.517 567 316 19 26 524 738 1243 1.98e-17 87.8
Msa1072570 MtrunA17_Chr2g0313491 23.178 535 300 18 60 569 1049 1497 1.89e-19 94.4
Msa1072570 MtrunA17_Chr2g0313491 25.850 441 257 19 368 788 815 1205 1.86e-18 90.9
Msa1072570 MtrunA17_Chr2g0313491 25.899 417 229 19 363 714 1079 1480 6.40e-14 76.3
Msa1072570 MtrunA17_Chr3g0108811 23.165 695 391 24 144 786 836 1439 2.09e-19 94.4
Msa1072570 MtrunA17_Chr2g0313471 35.333 150 92 3 140 289 117 261 5.52e-19 87.8
Msa1072570 MtrunA17_Chr2g0313471 25.000 260 111 9 338 569 47 250 2.55e-13 70.9
Msa1072570 MtrunA17_Chr1g0167331 26.019 319 194 8 325 642 35 312 6.62e-18 86.3
Msa1072570 MtrunA17_Chr1g0167331 24.286 420 221 15 31 439 13 346 4.63e-14 74.7
Msa1072570 MtrunA17_Chr1g0167331 29.891 184 107 7 620 793 33 204 6.79e-11 65.1
Msa1072570 MtrunA17_Chr1g0172081 36.986 146 88 1 325 470 57 198 6.82e-18 84.7
Msa1072570 MtrunA17_Chr1g0172081 31.522 184 108 6 620 795 55 228 1.92e-13 71.6
Msa1072570 MtrunA17_Chr2g0314141 37.162 148 84 2 325 470 18 158 7.42e-18 82.8
Msa1072570 MtrunA17_Chr1g0172071 28.704 216 145 4 79 293 63 270 2.13e-17 83.2
Msa1072570 MtrunA17_Chr8g0359871 39.130 138 80 2 333 470 5 138 6.31e-17 80.9
Msa1072570 MtrunA17_Chr8g0359871 30.508 177 101 7 627 793 2 166 9.15e-11 62.8
Msa1072570 MtrunA17_Chr1g0172101 31.016 187 121 3 92 278 150 328 7.02e-17 83.2
Msa1072570 MtrunA17_Chr1g0172141 31.551 187 120 3 92 278 1345 1523 3.70e-16 83.6
Msa1072570 MtrunA17_Chr1g0172141 25.607 453 257 16 142 570 1128 1524 5.86e-16 83.2
Msa1072570 MtrunA17_Chr1g0172141 27.293 447 280 16 367 788 805 1231 6.17e-16 82.8
Msa1072570 MtrunA17_Chr1g0172141 21.714 852 464 31 54 808 765 1510 8.00e-13 72.8
Msa1072570 MtrunA17_Chr2g0314151 32.374 139 86 3 140 278 5 135 6.17e-16 76.3
Msa1072570 MtrunA17_Chr5g0443761 22.607 606 382 18 58 629 661 1213 8.40e-16 82.4
Msa1072570 MtrunA17_Chr1g0172161 23.786 412 230 10 142 516 166 530 9.28e-16 81.3
Msa1072570 MtrunA17_Chr1g0172161 29.947 187 123 3 92 278 382 560 1.03e-15 81.3
Msa1072570 MtrunA17_Chr1g0172161 22.801 557 356 22 204 720 4 526 9.23e-11 65.5
Msa1072570 MtrunA17_Chr3g0107931 21.765 680 366 20 144 757 847 1426 1.14e-15 82.0
Msa1072570 MtrunA17_Chr1g0174521 31.507 219 128 8 142 346 29 239 1.27e-15 77.4
Msa1072570 MtrunA17_Chr1g0163801 25.000 496 280 17 325 804 1 420 3.78e-14 75.5
Msa1072570 MtrunA17_Chr1g0163801 23.823 361 187 10 201 518 94 409 4.16e-13 72.4
Msa1072570 MtrunA17_Chr1g0163801 30.508 118 80 1 142 259 305 420 6.68e-12 68.6
Msa1072570 MtrunA17_Chr4g0011631 24.523 367 215 9 142 470 9 351 2.19e-13 73.2
Msa1072570 MtrunA17_Chr3g0108071 22.430 642 347 21 159 757 5 538 2.44e-13 74.3
Msa1072570 MtrunA17_Chr1g0164101 28.718 195 122 6 602 788 15 200 5.61e-13 69.7
Msa1072570 MtrunA17_Chr3g0108011 23.298 382 238 17 391 763 1084 1419 7.42e-13 72.8
Msa1072570 MtrunA17_Chr5g0439121 22.926 458 250 20 142 535 1091 1509 7.76e-12 69.7
Msa1072570 MtrunA17_Chr1g0170961 46.341 82 40 2 389 470 3 80 7.94e-12 64.3
Msa1072570 MtrunA17_Chr1g0170961 36.893 103 63 2 142 244 3 103 2.33e-11 62.8
Msa1072570 MtrunA17_Chr1g0160951 22.481 387 224 10 166 535 898 1225 2.29e-11 68.2
Msa1072570 MtrunA17_Chr1g0160951 22.936 436 245 19 389 785 841 1224 5.18e-11 67.0
Msa1072570 MtrunA17_Chr3g0108821 27.063 303 194 9 170 464 1107 1390 3.26e-11 67.4
Msa1072570 MtrunA17_Chr1g0171091 28.358 134 92 2 145 278 172 301 4.26e-11 65.1
Msa1072570 MtrunA17_Chr1g0164121 30.000 140 92 2 140 279 168 301 8.47e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 137 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACACTCCAGGTCTTTA+TGG 0.128058 7_2:-69698453 Msa1072570:CDS
CTTGAAAACACTTCCAATTT+AGG 0.136657 7_2:+69700350 None:intergenic
AGAGCAAACTCTTCAAATTT+TGG 0.145764 7_2:+69699732 None:intergenic
TGGGGAAAGGTTGTCATATT+TGG 0.166084 7_2:+69699338 None:intergenic
CTTGTGAGAATTTGCTTTCT+TGG 0.188762 7_2:-69700982 Msa1072570:CDS
TTCCACAATTAAAGGAATTA+TGG 0.199351 7_2:-69699442 Msa1072570:CDS
TTGAAGTTGCACAAGGATTT+TGG 0.204790 7_2:+69699697 None:intergenic
TCCCAAAAGGTCTTCATCTT+TGG 0.207223 7_2:+69698486 None:intergenic
CCTCTTCAACAGTGCATAAA+TGG 0.226416 7_2:+69699504 None:intergenic
GAGAAGATAGAGGAGATAAT+TGG 0.229877 7_2:-69698684 Msa1072570:CDS
CCTTTCTCTTGTAGCCATTA+GGG 0.239724 7_2:+69701068 None:intergenic
GATAATATATTGTCAAATTT+AGG 0.245414 7_2:+69699240 None:intergenic
ACATAAATCGAATTCAAATT+TGG 0.246350 7_2:+69698717 None:intergenic
GATTTCATTTCCACAATTAA+AGG 0.250376 7_2:-69699450 Msa1072570:CDS
ATTCTTATCCTATAACATTC+TGG 0.267148 7_2:+69698519 None:intergenic
TGATTTGAAATATGTGTTTC+CGG 0.279941 7_2:-69698763 Msa1072570:CDS
TAGGATTTGAGTGTTTAAAA+AGG 0.284011 7_2:-69698806 Msa1072570:CDS
ATCTTCATCTTTGTCAAATT+CGG 0.284428 7_2:+69698413 None:intergenic
TTCCCATCATTGCAGACTAT+TGG 0.289956 7_2:-69698606 Msa1072570:CDS
AAGCAAATTCTCACAAGATT+TGG 0.291415 7_2:+69700988 None:intergenic
TATTGAAGATTGTCCTAAAT+TGG 0.291652 7_2:-69700363 Msa1072570:CDS
GCTGAGTGATTTAATGTTTA+CGG 0.293016 7_2:+69700292 None:intergenic
TCCTTTCTCTTGTAGCCATT+AGG 0.296006 7_2:+69701067 None:intergenic
ATTAGAGACGTTTAGAGATA+TGG 0.301244 7_2:-69699081 Msa1072570:CDS
ATGAGCAAAGAAGTTAAGTT+TGG 0.302990 7_2:+69700638 None:intergenic
GCCCAAAGATGAAGACCTTT+TGG 0.304326 7_2:-69698488 Msa1072570:CDS
AAGACATAAATTCCGTTATA+CGG 0.311113 7_2:-69700250 Msa1072570:CDS
AAACATCATGGTCAGATTAT+AGG 0.318295 7_2:-69698825 Msa1072570:CDS
TTGAGATGCCAGAATGTTAT+AGG 0.321938 7_2:-69698527 Msa1072570:CDS
TTCCAGATGTGCTTCAGTTT+TGG 0.323768 7_2:+69698846 None:intergenic
GATTCACTAGTCGAGGTGTT+TGG 0.333299 7_2:-69699914 Msa1072570:CDS
TTCTTGGGACATATGAATCT+TGG 0.334174 7_2:-69700966 Msa1072570:CDS
CCCAAAAGGTCTTCATCTTT+GGG 0.337764 7_2:+69698487 None:intergenic
TTCCAAAACTGAAGCACATC+TGG 0.338477 7_2:-69698848 Msa1072570:CDS
TTGTGAGAATTTGCTTTCTT+GGG 0.349329 7_2:-69700981 Msa1072570:CDS
GTATCCCTCGTTATGTTGTT+TGG 0.363796 7_2:+69700045 None:intergenic
TGTCAAAATTGTGTCACATA+TGG 0.367717 7_2:-69699817 Msa1072570:CDS
TCTTGGGACATATGAATCTT+GGG 0.383172 7_2:-69700965 Msa1072570:CDS
ATTCACTAGTCGAGGTGTTT+GGG 0.386845 7_2:-69699913 Msa1072570:CDS
CATAGTAAAATATGATTTGC+TGG 0.393379 7_2:-69701181 Msa1072570:CDS
CAAAGAATTTCATAAATTGT+TGG 0.403450 7_2:-69699996 Msa1072570:CDS
TTGGGATAAACAACAATTCA+TGG 0.415607 7_2:-69700947 Msa1072570:intron
AGAAGATAGAGGAGATAATT+GGG 0.422919 7_2:-69698683 Msa1072570:CDS
CTAGTCGAGGTGTTTGGGTC+AGG 0.422966 7_2:-69699908 Msa1072570:CDS
AGTCCAATAGTCTGCAATGA+TGG 0.424541 7_2:+69698603 None:intergenic
GATATGGATGAAGAGCTTCT+TGG 0.434016 7_2:-69699065 Msa1072570:CDS
AGCTTTGACTGAAACATTTG+AGG 0.435968 7_2:+69698565 None:intergenic
TTTGAAATGAAGAACAAGAA+AGG 0.438596 7_2:-69701237 Msa1072570:CDS
AAGGATTGGAGATGTTGAAT+TGG 0.441240 7_2:-69700069 Msa1072570:CDS
TATAAAGCTACCCAACCTTA+AGG 0.449476 7_2:-69700438 Msa1072570:CDS
TGGAAGAAGGCCTTAAGGTT+GGG 0.454022 7_2:+69700428 None:intergenic
TATTTGGTAGGATGAGTTTG+TGG 0.463045 7_2:-69700711 Msa1072570:intron
GACCTTGGAAGAAGGCCTTA+AGG 0.466377 7_2:+69700423 None:intergenic
AGCCATAATTCCTTTAATTG+TGG 0.467821 7_2:+69699440 None:intergenic
AGTGACAATTCCTCCAGCTT+AGG 0.470279 7_2:+69699581 None:intergenic
ACAGGTGGCATCACAAGGAT+TGG 0.471384 7_2:-69700083 Msa1072570:intron
CACCGTAGATGATGAAGGTT+GGG 0.472044 7_2:+69699293 None:intergenic
GCATGTTGCAGTGTGAACTA+TGG 0.477053 7_2:-69698890 Msa1072570:CDS
TGTTTACAATAACATTTCCA+TGG 0.479375 7_2:+69699318 None:intergenic
TTCATCATCTACGGTGGGAG+TGG 0.481204 7_2:-69699286 Msa1072570:CDS
ATTTGGTAGGATGAGTTTGT+GGG 0.484743 7_2:-69700710 Msa1072570:intron
GGAATTCAATAACAATGATA+AGG 0.490365 7_2:-69699477 Msa1072570:CDS
AATCAAGATTATAGTGACCT+TGG 0.490619 7_2:+69700408 None:intergenic
AGACATAAATTCCGTTATAC+GGG 0.492080 7_2:-69700249 Msa1072570:CDS
TGTTGAAGCATATGTATCTC+AGG 0.493850 7_2:+69699965 None:intergenic
GAAGATGAAAATATAAAAGA+AGG 0.496853 7_2:-69699626 Msa1072570:CDS
TTGGAAGAAGGCCTTAAGGT+TGG 0.499907 7_2:+69700427 None:intergenic
TAAGATTCCTTCGTCCCAAA+AGG 0.504491 7_2:+69698473 None:intergenic
CTCCTGCAGTTGATAATGAA+TGG 0.510077 7_2:+69699856 None:intergenic
TGACTGAAACATTTGAGGCT+AGG 0.512933 7_2:+69698570 None:intergenic
AACCTTAAGGCCTTCTTCCA+AGG 0.513224 7_2:-69700425 Msa1072570:CDS
CCATTTATGCACTGTTGAAG+AGG 0.513344 7_2:-69699504 Msa1072570:CDS
GTGTTTGGGTCAGGAGGAGA+AGG 0.515595 7_2:-69699899 Msa1072570:CDS
TTGTTAGCCTTGTGTTGTTG+TGG 0.515788 7_2:+69698636 None:intergenic
TGACAAGTTAAAGACCCTAA+TGG 0.517738 7_2:-69701082 Msa1072570:CDS
AAATCGAATTCAAATTTGGA+AGG 0.520534 7_2:+69698721 None:intergenic
GTTTACAATAACATTTCCAT+GGG 0.521481 7_2:+69699319 None:intergenic
AATAACATTTCCATGGGGAA+AGG 0.523863 7_2:+69699325 None:intergenic
AATAATTGCATCATGTTGGA+TGG 0.525133 7_2:+69698981 None:intergenic
AAGTTTCTCAAGACTACTCA+TGG 0.526873 7_2:+69700574 None:intergenic
TCATCATCTACGGTGGGAGT+GGG 0.526916 7_2:-69699285 Msa1072570:CDS
TACCATTCATTATCAACTGC+AGG 0.530426 7_2:-69699858 Msa1072570:CDS
AACAAGGCCTCATCTATGAG+TGG 0.533336 7_2:+69700662 None:intergenic
CACCCAACCTTCATCATCTA+CGG 0.534491 7_2:-69699295 Msa1072570:CDS
GTCCAATAGTCTGCAATGAT+GGG 0.541208 7_2:+69698604 None:intergenic
CCCTAATGGCTACAAGAGAA+AGG 0.546038 7_2:-69701068 Msa1072570:CDS
ATTATAGTGACCTTGGAAGA+AGG 0.546507 7_2:+69700415 None:intergenic
CCACCGTAGATGATGAAGGT+TGG 0.548462 7_2:+69699292 None:intergenic
ACGGTGAGATCCTCAAGCAT+GGG 0.557001 7_2:+69700311 None:intergenic
ATTCAAATTTGGAAGGCTTG+TGG 0.561635 7_2:+69698728 None:intergenic
TACGGTGAGATCCTCAAGCA+TGG 0.563629 7_2:+69700310 None:intergenic
ATGCATAGATCTTCTAGAGT+AGG 0.564637 7_2:+69701201 None:intergenic
CTTGTGGCTATTGAAACATC+CGG 0.566998 7_2:+69698744 None:intergenic
GTCTGAATGCGAGAAGATAG+AGG 0.568434 7_2:-69698694 Msa1072570:CDS
TGAGAATAATTGCATCATGT+TGG 0.570700 7_2:+69698977 None:intergenic
AGTGTACGACTACGATATCA+TGG 0.582757 7_2:-69699381 Msa1072570:CDS
GTCGAGGTGTTTGGGTCAGG+AGG 0.583099 7_2:-69699905 Msa1072570:CDS
AGAAGTTAAGTTTGGAAACA+AGG 0.584238 7_2:+69700646 None:intergenic
GAAGGAATCTTATACACTCC+AGG 0.584264 7_2:-69698462 Msa1072570:CDS
GAGTTTGCTCTCTATATCCA+TGG 0.584354 7_2:-69699720 Msa1072570:CDS
AGTTGAGTCTTGCAACATGA+TGG 0.588917 7_2:-69699666 Msa1072570:CDS
TGGGGATATAAACAAACACT+TGG 0.595165 7_2:-69699266 Msa1072570:CDS
AGTACGAGAATGTGAAAACA+TGG 0.598153 7_2:-69700540 Msa1072570:CDS
ACTCCCACCGTAGATGATGA+AGG 0.600393 7_2:+69699288 None:intergenic
AATGGCTACAAGAGAAAGGA+GGG 0.603173 7_2:-69701064 Msa1072570:CDS
CATCATCTACGGTGGGAGTG+GGG 0.604922 7_2:-69699284 Msa1072570:CDS
GATGTTAACGAGGTGATACA+AGG 0.609419 7_2:-69698393 Msa1072570:CDS
AAGCACATCTGGAAACATCA+TGG 0.610576 7_2:-69698837 Msa1072570:CDS
TCTGGCATCTCAACATAGCA+AGG 0.611984 7_2:+69698537 None:intergenic
ATGCACTGTTGAAGAGGACA+AGG 0.614975 7_2:-69699498 Msa1072570:CDS
ATAATTGCATCATGTTGGAT+GGG 0.615576 7_2:+69698982 None:intergenic
TGCAATTATTCTCACATGTG+AGG 0.616272 7_2:-69698968 Msa1072570:CDS
CGGTGAGATCCTCAAGCATG+GGG 0.619271 7_2:+69700312 None:intergenic
GACATAAATTCCGTTATACG+GGG 0.624135 7_2:-69700248 Msa1072570:CDS
TAATGGCTACAAGAGAAAGG+AGG 0.625665 7_2:-69701065 Msa1072570:CDS
ACAAGGCCTCATCTATGAGT+GGG 0.626602 7_2:+69700663 None:intergenic
TGATTGTGATTCACTAGTCG+AGG 0.631404 7_2:-69699921 Msa1072570:CDS
GATGGATGAGATAACTACAA+AGG 0.638189 7_2:-69699648 Msa1072570:CDS
CAACCTTCATCATCTACGGT+GGG 0.640470 7_2:-69699291 Msa1072570:CDS
CATGTGAGGTATCTCACAGT+GGG 0.642706 7_2:-69698954 Msa1072570:CDS
ACAGAAATTCCATAAAGACC+TGG 0.646836 7_2:+69698444 None:intergenic
AATATGACAACCTTTCCCCA+TGG 0.649695 7_2:-69699335 Msa1072570:CDS
CTGGCATCTCAACATAGCAA+GGG 0.650169 7_2:+69698538 None:intergenic
CCAACCTTCATCATCTACGG+TGG 0.651590 7_2:-69699292 Msa1072570:CDS
CAAAGATGAAGATGTTAACG+AGG 0.652261 7_2:-69698403 Msa1072570:CDS
TGTTGAACCACAACAACACA+AGG 0.655240 7_2:-69698643 Msa1072570:CDS
ACATCACCCACTCATAGATG+AGG 0.668623 7_2:-69700669 Msa1072570:CDS
TCATAATTCAGAGAAATACA+AGG 0.668872 7_2:-69699216 Msa1072570:intron
GAAGGTAGAAAAGAATACGA+TGG 0.679715 7_2:-69699881 Msa1072570:CDS
ATGGAAACATAATATTACCA+AGG 0.685404 7_2:-69699798 Msa1072570:CDS
ACATAAATTCCGTTATACGG+GGG 0.688318 7_2:-69700247 Msa1072570:CDS
TTGGACCAAACAACATAACG+AGG 0.692430 7_2:-69700050 Msa1072570:CDS
TTTACAATAACATTTCCATG+GGG 0.698915 7_2:+69699320 None:intergenic
TGGACCAAACAACATAACGA+GGG 0.701795 7_2:-69700049 Msa1072570:CDS
TCAGCAGCAACTATATACAG+AGG 0.712255 7_2:-69700274 Msa1072570:CDS
ACATGTGAGGTATCTCACAG+TGG 0.739112 7_2:-69698955 Msa1072570:CDS
GGTGAGATCCTCAAGCATGG+GGG 0.752578 7_2:+69700313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTAATATTATT+TGG - chr7_2:69698941-69698960 Msa1072570:CDS 0.0%
!!! TTTTTTTAATATTATTTGGT+AGG - chr7_2:69698945-69698964 Msa1072570:CDS 10.0%
!! TTAATTATTGAACATATATG+TGG + chr7_2:69699519-69699538 None:intergenic 15.0%
!! GATAATATATTGTCAAATTT+AGG + chr7_2:69700431-69700450 None:intergenic 15.0%
!! TTCTTCATTTCAAAAATTGA+AGG + chr7_2:69698425-69698444 None:intergenic 20.0%
!!! TGTTATTTTACTGTTTTACT+TGG - chr7_2:69698860-69698879 Msa1072570:CDS 20.0%
!! GAAAGTAATAATTTACTTGT+GGG + chr7_2:69699488-69699507 None:intergenic 20.0%
!! AGAAAGTAATAATTTACTTG+TGG + chr7_2:69699489-69699508 None:intergenic 20.0%
!! CAAAGAATTTCATAAATTGT+TGG - chr7_2:69699672-69699691 Msa1072570:CDS 20.0%
!!! CACTAATATCTTTTAGATTT+TGG + chr7_2:69699906-69699925 None:intergenic 20.0%
!! GAAGATGAAAATATAAAAGA+AGG - chr7_2:69700042-69700061 Msa1072570:CDS 20.0%
!! AAAATTAATTGAGTAGTTTG+AGG + chr7_2:69700508-69700527 None:intergenic 20.0%
!! ACATAAATCGAATTCAAATT+TGG + chr7_2:69700954-69700973 None:intergenic 20.0%
!! TTTGAAATGAAGAACAAGAA+AGG - chr7_2:69698431-69698450 Msa1072570:CDS 25.0%
!! CATAGTAAAATATGATTTGC+TGG - chr7_2:69698487-69698506 Msa1072570:CDS 25.0%
! ATATATAGATAGCATAAGTG+AGG - chr7_2:69698883-69698902 Msa1072570:CDS 25.0%
!!! ATACACACTTTTTTCAATGA+TGG + chr7_2:69699288-69699307 None:intergenic 25.0%
! TATTGAAGATTGTCCTAAAT+TGG - chr7_2:69699305-69699324 Msa1072570:CDS 25.0%
! AAGACATAAATTCCGTTATA+CGG - chr7_2:69699418-69699437 Msa1072570:CDS 25.0%
!!! GATAACCATATTTGTTTTAC+AGG - chr7_2:69699567-69699586 Msa1072570:CDS 25.0%
! ATGGAAACATAATATTACCA+AGG - chr7_2:69699870-69699889 Msa1072570:CDS 25.0%
! GGAATTCAATAACAATGATA+AGG - chr7_2:69700191-69700210 Msa1072570:intron 25.0%
! GATTTCATTTCCACAATTAA+AGG - chr7_2:69700218-69700237 Msa1072570:intron 25.0%
! TTCCACAATTAAAGGAATTA+TGG - chr7_2:69700226-69700245 Msa1072570:intron 25.0%
! TTTACAATAACATTTCCATG+GGG + chr7_2:69700351-69700370 None:intergenic 25.0%
! GTTTACAATAACATTTCCAT+GGG + chr7_2:69700352-69700371 None:intergenic 25.0%
! TGTTTACAATAACATTTCCA+TGG + chr7_2:69700353-69700372 None:intergenic 25.0%
! TCATAATTCAGAGAAATACA+AGG - chr7_2:69700452-69700471 Msa1072570:CDS 25.0%
! TAGGATTTGAGTGTTTAAAA+AGG - chr7_2:69700862-69700881 Msa1072570:intron 25.0%
!! TGATTTGAAATATGTGTTTC+CGG - chr7_2:69700905-69700924 Msa1072570:intron 25.0%
! AAATCGAATTCAAATTTGGA+AGG + chr7_2:69700950-69700969 None:intergenic 25.0%
! ATTCTTATCCTATAACATTC+TGG + chr7_2:69701152-69701171 None:intergenic 25.0%
! ATCTTCATCTTTGTCAAATT+CGG + chr7_2:69701258-69701277 None:intergenic 25.0%
! TGTTTTCATGTGTGATAGAA+TGG + chr7_2:69698549-69698568 None:intergenic 30.0%
AAGCAAATTCTCACAAGATT+TGG + chr7_2:69698683-69698702 None:intergenic 30.0%
! TTGTGAGAATTTGCTTTCTT+GGG - chr7_2:69698687-69698706 Msa1072570:CDS 30.0%
TTGGGATAAACAACAATTCA+TGG - chr7_2:69698721-69698740 Msa1072570:CDS 30.0%
AGAAGTTAAGTTTGGAAACA+AGG + chr7_2:69699025-69699044 None:intergenic 30.0%
ATGAGCAAAGAAGTTAAGTT+TGG + chr7_2:69699033-69699052 None:intergenic 30.0%
AATCAAGATTATAGTGACCT+TGG + chr7_2:69699263-69699282 None:intergenic 30.0%
CTTGAAAACACTTCCAATTT+AGG + chr7_2:69699321-69699340 None:intergenic 30.0%
!!! AAATTGGAAGTGTTTTCAAG+AGG - chr7_2:69699321-69699340 Msa1072570:CDS 30.0%
GCTGAGTGATTTAATGTTTA+CGG + chr7_2:69699379-69699398 None:intergenic 30.0%
AGACATAAATTCCGTTATAC+GGG - chr7_2:69699419-69699438 Msa1072570:CDS 30.0%
!!! AACCATATTTGTTTTACAGG+TGG - chr7_2:69699570-69699589 Msa1072570:CDS 30.0%
!! TGTGACACAATTTTGACAAA+CGG + chr7_2:69699849-69699868 None:intergenic 30.0%
TGTCAAAATTGTGTCACATA+TGG - chr7_2:69699851-69699870 Msa1072570:CDS 30.0%
! AGAGCAAACTCTTCAAATTT+TGG + chr7_2:69699939-69699958 None:intergenic 30.0%
!! GAAGATTTTATTTCCTAAGC+TGG - chr7_2:69700074-69700093 Msa1072570:CDS 30.0%
GAACAAAAACATTTCAGCTT+TGG + chr7_2:69700123-69700142 None:intergenic 30.0%
!! AAGCTGAAATGTTTTTGTTC+AGG - chr7_2:69700123-69700142 Msa1072570:intron 30.0%
AGCCATAATTCCTTTAATTG+TGG + chr7_2:69700231-69700250 None:intergenic 30.0%
ATTAATTGAGTAGTTTGAGG+TGG + chr7_2:69700505-69700524 None:intergenic 30.0%
TATACGTTGTATCTTTGTGT+AGG - chr7_2:69700551-69700570 Msa1072570:CDS 30.0%
ATTAGAGACGTTTAGAGATA+TGG - chr7_2:69700587-69700606 Msa1072570:CDS 30.0%
ATAATTGCATCATGTTGGAT+GGG + chr7_2:69700689-69700708 None:intergenic 30.0%
AATAATTGCATCATGTTGGA+TGG + chr7_2:69700690-69700709 None:intergenic 30.0%
TGAGAATAATTGCATCATGT+TGG + chr7_2:69700694-69700713 None:intergenic 30.0%
AAACATCATGGTCAGATTAT+AGG - chr7_2:69700843-69700862 Msa1072570:intron 30.0%
AGAAGATAGAGGAGATAATT+GGG - chr7_2:69700985-69701004 Msa1072570:CDS 30.0%
!! ATGCATAGATCTTCTAGAGT+AGG + chr7_2:69698470-69698489 None:intergenic 35.0%
TGACAAGTTAAAGACCCTAA+TGG - chr7_2:69698586-69698605 Msa1072570:CDS 35.0%
! CTTGTGAGAATTTGCTTTCT+TGG - chr7_2:69698686-69698705 Msa1072570:CDS 35.0%
TTCTTGGGACATATGAATCT+TGG - chr7_2:69698702-69698721 Msa1072570:CDS 35.0%
TCTTGGGACATATGAATCTT+GGG - chr7_2:69698703-69698722 Msa1072570:CDS 35.0%
TATTTGGTAGGATGAGTTTG+TGG - chr7_2:69698957-69698976 Msa1072570:CDS 35.0%
ATTTGGTAGGATGAGTTTGT+GGG - chr7_2:69698958-69698977 Msa1072570:CDS 35.0%
AAGTTTCTCAAGACTACTCA+TGG + chr7_2:69699097-69699116 None:intergenic 35.0%
AGTACGAGAATGTGAAAACA+TGG - chr7_2:69699128-69699147 Msa1072570:intron 35.0%
TATAAAGCTACCCAACCTTA+AGG - chr7_2:69699230-69699249 Msa1072570:CDS 35.0%
ATTATAGTGACCTTGGAAGA+AGG + chr7_2:69699256-69699275 None:intergenic 35.0%
GACATAAATTCCGTTATACG+GGG - chr7_2:69699420-69699439 Msa1072570:CDS 35.0%
ACATAAATTCCGTTATACGG+GGG - chr7_2:69699421-69699440 Msa1072570:CDS 35.0%
TGATTTAAACCCCCGTATAA+CGG + chr7_2:69699433-69699452 None:intergenic 35.0%
TGCCACCTGTAAAACAAATA+TGG + chr7_2:69699575-69699594 None:intergenic 35.0%
AAGGATTGGAGATGTTGAAT+TGG - chr7_2:69699599-69699618 Msa1072570:CDS 35.0%
TGTTGAAGCATATGTATCTC+AGG + chr7_2:69699706-69699725 None:intergenic 35.0%
GAAGGTAGAAAAGAATACGA+TGG - chr7_2:69699787-69699806 Msa1072570:CDS 35.0%
TACCATTCATTATCAACTGC+AGG - chr7_2:69699810-69699829 Msa1072570:CDS 35.0%
!! ATTTTGGAAGCTTACAACCT+TGG + chr7_2:69699890-69699909 None:intergenic 35.0%
! TTGAAGTTGCACAAGGATTT+TGG + chr7_2:69699974-69699993 None:intergenic 35.0%
!!! GTAGTTTTTGAAGTTGCACA+AGG + chr7_2:69699981-69700000 None:intergenic 35.0%
GATGGATGAGATAACTACAA+AGG - chr7_2:69700020-69700039 Msa1072570:CDS 35.0%
!! GATTTTATTTCCTAAGCTGG+AGG - chr7_2:69700077-69700096 Msa1072570:CDS 35.0%
AATAACATTTCCATGGGGAA+AGG + chr7_2:69700346-69700365 None:intergenic 35.0%
TGGGGATATAAACAAACACT+TGG - chr7_2:69700402-69700421 Msa1072570:CDS 35.0%
TACAAACACATACATGCATG+AGG - chr7_2:69700475-69700494 Msa1072570:CDS 35.0%
TGCAATTATTCTCACATGTG+AGG - chr7_2:69700700-69700719 Msa1072570:CDS 35.0%
ATTCAAATTTGGAAGGCTTG+TGG + chr7_2:69700943-69700962 None:intergenic 35.0%
GAGAAGATAGAGGAGATAAT+TGG - chr7_2:69700984-69701003 Msa1072570:CDS 35.0%
! AGCTTTGACTGAAACATTTG+AGG + chr7_2:69701106-69701125 None:intergenic 35.0%
TTGAGATGCCAGAATGTTAT+AGG - chr7_2:69701141-69701160 Msa1072570:CDS 35.0%
TTATACACTCCAGGTCTTTA+TGG - chr7_2:69701215-69701234 Msa1072570:CDS 35.0%
ACAGAAATTCCATAAAGACC+TGG + chr7_2:69701227-69701246 None:intergenic 35.0%
CAAAGATGAAGATGTTAACG+AGG - chr7_2:69701265-69701284 Msa1072570:CDS 35.0%
CCTTTCTCTTGTAGCCATTA+GGG + chr7_2:69698603-69698622 None:intergenic 40.0%
TCCTTTCTCTTGTAGCCATT+AGG + chr7_2:69698604-69698623 None:intergenic 40.0%
TAATGGCTACAAGAGAAAGG+AGG - chr7_2:69698603-69698622 Msa1072570:CDS 40.0%
AATGGCTACAAGAGAAAGGA+GGG - chr7_2:69698604-69698623 Msa1072570:CDS 40.0%
TCAGCAGCAACTATATACAG+AGG - chr7_2:69699394-69699413 Msa1072570:CDS 40.0%
TTGGACCAAACAACATAACG+AGG - chr7_2:69699618-69699637 Msa1072570:CDS 40.0%
TGGACCAAACAACATAACGA+GGG - chr7_2:69699619-69699638 Msa1072570:CDS 40.0%
GTATCCCTCGTTATGTTGTT+TGG + chr7_2:69699626-69699645 None:intergenic 40.0%
TGATTGTGATTCACTAGTCG+AGG - chr7_2:69699747-69699766 Msa1072570:CDS 40.0%
! ATTCACTAGTCGAGGTGTTT+GGG - chr7_2:69699755-69699774 Msa1072570:CDS 40.0%
!! CTCCTGCAGTTGATAATGAA+TGG + chr7_2:69699815-69699834 None:intergenic 40.0%
! GAGTTTGCTCTCTATATCCA+TGG - chr7_2:69699948-69699967 Msa1072570:CDS 40.0%
AGTTGAGTCTTGCAACATGA+TGG - chr7_2:69700002-69700021 Msa1072570:CDS 40.0%
CCTCTTCAACAGTGCATAAA+TGG + chr7_2:69700167-69700186 None:intergenic 40.0%
CCATTTATGCACTGTTGAAG+AGG - chr7_2:69700164-69700183 Msa1072570:intron 40.0%
GAACAAAAACACTTGAGCTC+TGG + chr7_2:69700264-69700283 None:intergenic 40.0%
!! GAGCTCAAGTGTTTTTGTTC+AGG - chr7_2:69700264-69700283 Msa1072570:CDS 40.0%
AGTGTACGACTACGATATCA+TGG - chr7_2:69700287-69700306 Msa1072570:CDS 40.0%
TGGGGAAAGGTTGTCATATT+TGG + chr7_2:69700333-69700352 None:intergenic 40.0%
AATATGACAACCTTTCCCCA+TGG - chr7_2:69700333-69700352 Msa1072570:CDS 40.0%
ACGTTGTATCTTTGTGTAGG+TGG - chr7_2:69700554-69700573 Msa1072570:CDS 40.0%
GATATGGATGAAGAGCTTCT+TGG - chr7_2:69700603-69700622 Msa1072570:CDS 40.0%
TTCCAAAACTGAAGCACATC+TGG - chr7_2:69700820-69700839 Msa1072570:intron 40.0%
! TTCCAGATGTGCTTCAGTTT+TGG + chr7_2:69700825-69700844 None:intergenic 40.0%
AAGCACATCTGGAAACATCA+TGG - chr7_2:69700831-69700850 Msa1072570:intron 40.0%
CTTGTGGCTATTGAAACATC+CGG + chr7_2:69700927-69700946 None:intergenic 40.0%
TGTTGAACCACAACAACACA+AGG - chr7_2:69701025-69701044 Msa1072570:CDS 40.0%
!! TTGTTAGCCTTGTGTTGTTG+TGG + chr7_2:69701035-69701054 None:intergenic 40.0%
TTCCCATCATTGCAGACTAT+TGG - chr7_2:69701062-69701081 Msa1072570:CDS 40.0%
GTCCAATAGTCTGCAATGAT+GGG + chr7_2:69701067-69701086 None:intergenic 40.0%
AGTCCAATAGTCTGCAATGA+TGG + chr7_2:69701068-69701087 None:intergenic 40.0%
! TGACTGAAACATTTGAGGCT+AGG + chr7_2:69701101-69701120 None:intergenic 40.0%
CCCAAAAGGTCTTCATCTTT+GGG + chr7_2:69701184-69701203 None:intergenic 40.0%
! CCCAAAGATGAAGACCTTTT+GGG - chr7_2:69701181-69701200 Msa1072570:CDS 40.0%
TCCCAAAAGGTCTTCATCTT+TGG + chr7_2:69701185-69701204 None:intergenic 40.0%
TAAGATTCCTTCGTCCCAAA+AGG + chr7_2:69701198-69701217 None:intergenic 40.0%
GAAGGAATCTTATACACTCC+AGG - chr7_2:69701206-69701225 Msa1072570:CDS 40.0%
GATGTTAACGAGGTGATACA+AGG - chr7_2:69701275-69701294 Msa1072570:CDS 40.0%
CCCTAATGGCTACAAGAGAA+AGG - chr7_2:69698600-69698619 Msa1072570:CDS 45.0%
ACATCACCCACTCATAGATG+AGG - chr7_2:69698999-69699018 Msa1072570:CDS 45.0%
ACAAGGCCTCATCTATGAGT+GGG + chr7_2:69699008-69699027 None:intergenic 45.0%
AACAAGGCCTCATCTATGAG+TGG + chr7_2:69699009-69699028 None:intergenic 45.0%
TGGAAGAAGGCCTTAAGGTT+GGG + chr7_2:69699243-69699262 None:intergenic 45.0%
TTGGAAGAAGGCCTTAAGGT+TGG + chr7_2:69699244-69699263 None:intergenic 45.0%
AACCTTAAGGCCTTCTTCCA+AGG - chr7_2:69699243-69699262 Msa1072570:CDS 45.0%
! GTTTTACAGGTGGCATCACA+AGG - chr7_2:69699580-69699599 Msa1072570:CDS 45.0%
! GATTCACTAGTCGAGGTGTT+TGG - chr7_2:69699754-69699773 Msa1072570:CDS 45.0%
!! TTGCACAAGGATTTTGGCCA+TGG + chr7_2:69699968-69699987 None:intergenic 45.0%
AGTGACAATTCCTCCAGCTT+AGG + chr7_2:69700090-69700109 None:intergenic 45.0%
ATGCACTGTTGAAGAGGACA+AGG - chr7_2:69700170-69700189 Msa1072570:intron 45.0%
CACCCAACCTTCATCATCTA+CGG - chr7_2:69700373-69700392 Msa1072570:CDS 45.0%
CACCGTAGATGATGAAGGTT+GGG + chr7_2:69700378-69700397 None:intergenic 45.0%
CAACCTTCATCATCTACGGT+GGG - chr7_2:69700377-69700396 Msa1072570:CDS 45.0%
! ACATGTGAGGTATCTCACAG+TGG - chr7_2:69700713-69700732 Msa1072570:intron 45.0%
! CATGTGAGGTATCTCACAGT+GGG - chr7_2:69700714-69700733 Msa1072570:intron 45.0%
GCATGTTGCAGTGTGAACTA+TGG - chr7_2:69700778-69700797 Msa1072570:intron 45.0%
GTCTGAATGCGAGAAGATAG+AGG - chr7_2:69700974-69700993 Msa1072570:CDS 45.0%
CTGGCATCTCAACATAGCAA+GGG + chr7_2:69701133-69701152 None:intergenic 45.0%
TCTGGCATCTCAACATAGCA+AGG + chr7_2:69701134-69701153 None:intergenic 45.0%
! GCCCAAAGATGAAGACCTTT+TGG - chr7_2:69701180-69701199 Msa1072570:CDS 45.0%
!!! ATGAAGACCTTTTGGGACGA+AGG - chr7_2:69701188-69701207 Msa1072570:CDS 45.0%
GACCTTGGAAGAAGGCCTTA+AGG + chr7_2:69699248-69699267 None:intergenic 50.0%
TTCTTACACCCCCATGCTTG+AGG - chr7_2:69699347-69699366 Msa1072570:CDS 50.0%
ACGGTGAGATCCTCAAGCAT+GGG + chr7_2:69699360-69699379 None:intergenic 50.0%
TACGGTGAGATCCTCAAGCA+TGG + chr7_2:69699361-69699380 None:intergenic 50.0%
ACAGGTGGCATCACAAGGAT+TGG - chr7_2:69699585-69699604 Msa1072570:CDS 50.0%
CCACCGTAGATGATGAAGGT+TGG + chr7_2:69700379-69700398 None:intergenic 50.0%
CCAACCTTCATCATCTACGG+TGG - chr7_2:69700376-69700395 Msa1072570:CDS 50.0%
ACTCCCACCGTAGATGATGA+AGG + chr7_2:69700383-69700402 None:intergenic 50.0%
TTCATCATCTACGGTGGGAG+TGG - chr7_2:69700382-69700401 Msa1072570:CDS 50.0%
TCATCATCTACGGTGGGAGT+GGG - chr7_2:69700383-69700402 Msa1072570:CDS 50.0%
GGTGAGATCCTCAAGCATGG+GGG + chr7_2:69699358-69699377 None:intergenic 55.0%
CGGTGAGATCCTCAAGCATG+GGG + chr7_2:69699359-69699378 None:intergenic 55.0%
! CTAGTCGAGGTGTTTGGGTC+AGG - chr7_2:69699760-69699779 Msa1072570:CDS 55.0%
GTGTTTGGGTCAGGAGGAGA+AGG - chr7_2:69699769-69699788 Msa1072570:CDS 55.0%
CATCATCTACGGTGGGAGTG+GGG - chr7_2:69700384-69700403 Msa1072570:CDS 55.0%
! GTCGAGGTGTTTGGGTCAGG+AGG - chr7_2:69699763-69699782 Msa1072570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69698380 69701310 69698380 ID=Msa1072570;Name=Msa1072570
chr7_2 mRNA 69698380 69701310 69698380 ID=Msa1072570-mRNA-1;Parent=Msa1072570;Name=Msa1072570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0|1|1|1|4|0|824
chr7_2 exon 69700948 69701310 69700948 ID=Msa1072570-mRNA-1:exon:15548;Parent=Msa1072570-mRNA-1
chr7_2 exon 69700235 69700723 69700235 ID=Msa1072570-mRNA-1:exon:15547;Parent=Msa1072570-mRNA-1
chr7_2 exon 69699217 69700101 69699217 ID=Msa1072570-mRNA-1:exon:15546;Parent=Msa1072570-mRNA-1
chr7_2 exon 69698380 69699117 69698380 ID=Msa1072570-mRNA-1:exon:15545;Parent=Msa1072570-mRNA-1
chr7_2 CDS 69700948 69701310 69700948 ID=Msa1072570-mRNA-1:cds;Parent=Msa1072570-mRNA-1
chr7_2 CDS 69700235 69700723 69700235 ID=Msa1072570-mRNA-1:cds;Parent=Msa1072570-mRNA-1
chr7_2 CDS 69699217 69700101 69699217 ID=Msa1072570-mRNA-1:cds;Parent=Msa1072570-mRNA-1
chr7_2 CDS 69698380 69699117 69698380 ID=Msa1072570-mRNA-1:cds;Parent=Msa1072570-mRNA-1
Gene Sequence

>Msa1072570

TTGCAGGAAGCATCAGTAACACAAGAAATTCATGATCATATACCTTCAATTTTTGAAATGAAGAACAAGAAAGGAAAAATTCACATGCCTACTCTAGAAGATCTATGCATAGTAAAATATGATTTGCTGGATGTATTATTCTTTCTTGAAGAAAAATGCAATTTCACCATTCTATCACACATGAAAACAATCAAAATTGAAAAGTGTGACAAGTTAAAGACCCTAATGGCTACAAGAGAAAGGAGGGAAGACATGATAAACTCTTTTGCTCTACTAGAATCTCTTCATTTAAGTAATCTGCCAAATCTTGTGAGAATTTGCTTTCTTGGGACATATGAATCTTGGGATAAACAACAATTCATGGATGAGTTTGTGGGAGATAATGTAAGCTTAAGACATCACCCACTCATAGATGAGGCCTTGTTTCCAAACTTAACTTCTTTGCTCATCGAAGAATGCAACAGAATCAACATCTTGTTCTCTCATTCAACCATGAGTAGTCTTGAGAAACTTCAGAAGCTAGAAGTACGAGAATGTGAAAACATGGAAGAAATAATATCTAATCAAGAAGACATAGAAGCAACTAATGATAAAATCATGTTTCGTGCATTGCAGCATCTACTTCTTATAAAGCTACCCAACCTTAAGGCCTTCTTCCAAGGTCACTATAATCTTGATTTTCCATCATTGAAAAAAGTGTGTATTGAAGATTGTCCTAAATTGGAAGTGTTTTCAAGAGGTGATTCTTACACCCCCATGCTTGAGGATCTCACCGTAAACATTAAATCACTCAGCAGCAACTATATACAGAGGAAAGACATAAATTCCGTTATACGGGGGTTTAAATCATTTGTGGCATCACAAGGATTGGAGATGTTGAATTGGACCAAACAACATAACGAGGGATACTTCATAGAAAACTCAAAAATAAGCATCAAAGAATTTCATAAATTGTTGGTACTTGTACCTGAGATACATATGCTTCAACATGTCATAGAACTCACTTTAAGTGATTGTGATTCACTAGTCGAGGTGTTTGGGTCAGGAGGAGAAGGTAGAAAAGAATACGATGGTACCATTCATTATCAACTGCAGGAGTTGAATTTGAACCGTTTGTCAAAATTGTGTCACATATGGAAACATAATATTACCAAGGTTGTAAGCTTCCAAAATCTAAAAGATATTAGTGTTTATTGTTGCCAAAATTTGAAGAGTTTGCTCTCTATATCCATGGCCAAAATCCTTGTGCAACTTCAAAAACTACAAGTTGAGTCTTGCAACATGATGGATGAGATAACTACAAAGGAAGATGAAAATATAAAAGAAGGCAACAAAGTGAAGATTTTATTTCCTAAGCTGGAGGAATTGTCACTTGTTAATCTTCCAAAGCTGAAATGTTTTTGTTCAGGAGATTATGACTATGATATCCATTTATGCACTGTTGAAGAGGACAAGGAATTCAATAACAATGATAAGGTTCAGATTTCATTTCCACAATTAAAGGAATTATGGCTTCGTGAAGTACCAGAGCTCAAGTGTTTTTGTTCAGGAGTGTACGACTACGATATCATGGTGTCGTCAACTAATGAGTGTCCAAATATGACAACCTTTCCCCATGGAAATGTTATTGTAAACACACCCAACCTTCATCATCTACGGTGGGAGTGGGGATATAAACAAACACTTGGAGACCTAAATTTGACAATATATTATCATCATAATTCAGAGAAATACAAGGTGGAGTTGCAAAAATTAGAGACGTTTAGAGATATGGATGAAGAGCTTCTTGGCTACATGAAAATAGTAAAAGATATTGAGATTGTAAACTGTCACAAGCTATTGAATTGCATCCCATCCAACATGATGCAATTATTCTCACATGTGAGGTATCTCACAGTGGGAGAATGTGAGTGCTTAGAAGAGATATTTGAATCAAATGATAGCATGTTGCAGTGTGAACTATGGCTATTGCATTTGTCTTATCTTCCAAAACTGAAGCACATCTGGAAACATCATGGTCAGATTATAGGATTTGAGTGTTTAAAAAGGATAAGCATAAAGCAGTGCAATGATTTGAAATATGTGTTTCCGGATGTTTCAATAGCCACAAGCCTTCCAAATTTGAATTCGATTTATGTGTCTGAATGCGAGAAGATAGAGGAGATAATTGGGAATAATAATTGTAATCATGTTGAACCACAACAACACAAGGCTAACAAGATCATATTCCCATCATTGCAGACTATTGGACTAGAAAAGCTTCCTAGCCTCAAATGTTTCAGTCAAAGCTCTTTCCCTTGCTATGTTGAGATGCCAGAATGTTATAGGATAAGAATTGAAGACTGCCCAAAGATGAAGACCTTTTGGGACGAAGGAATCTTATACACTCCAGGTCTTTATGGAATTTCTGTAGAAAATACCGAATTTGACAAAGATGAAGATGTTAACGAGGTGATACAAGGACACAATAAATGA
Protein sequence

>Msa1072570

LQEASVTQEIHDHIPSIFEMKNKKGKIHMPTLEDLCIVKYDLLDVLFFLEEKCNFTILSHMKTIKIEKCDKLKTLMATRERREDMINSFALLESLHLSNLPNLVRICFLGTYESWDKQQFMDEFVGDNVSLRHHPLIDEALFPNLTSLLIEECNRINILFSHSTMSSLEKLQKLEVRECENMEEIISNQEDIEATNDKIMFRALQHLLLIKLPNLKAFFQGHYNLDFPSLKKVCIEDCPKLEVFSRGDSYTPMLEDLTVNIKSLSSNYIQRKDINSVIRGFKSFVASQGLEMLNWTKQHNEGYFIENSKISIKEFHKLLVLVPEIHMLQHVIELTLSDCDSLVEVFGSGGEGRKEYDGTIHYQLQELNLNRLSKLCHIWKHNITKVVSFQNLKDISVYCCQNLKSLLSISMAKILVQLQKLQVESCNMMDEITTKEDENIKEGNKVKILFPKLEELSLVNLPKLKCFCSGDYDYDIHLCTVEEDKEFNNNDKVQISFPQLKELWLREVPELKCFCSGVYDYDIMVSSTNECPNMTTFPHGNVIVNTPNLHHLRWEWGYKQTLGDLNLTIYYHHNSEKYKVELQKLETFRDMDEELLGYMKIVKDIEIVNCHKLLNCIPSNMMQLFSHVRYLTVGECECLEEIFESNDSMLQCELWLLHLSYLPKLKHIWKHHGQIIGFECLKRISIKQCNDLKYVFPDVSIATSLPNLNSIYVSECEKIEEIIGNNNCNHVEPQQHKANKIIFPSLQTIGLEKLPSLKCFSQSSFPCYVEMPECYRIRIEDCPKMKTFWDEGILYTPGLYGISVENTEFDKDEDVNEVIQGHNK*