AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079410 MtrunA17_Chr7g0264351 97.931 725 14 1 1 725 1 724 0.0 1464
Msa1079410 MtrunA17_Chr7g0264311 97.241 725 19 1 1 725 1 724 0.0 1455
Msa1079410 MtrunA17_Chr7g0264341 96.966 725 21 1 1 725 1 724 0.0 1451
Msa1079410 MtrunA17_Chr1g0181091 88.595 719 73 1 7 725 3 712 0.0 1326
Msa1079410 MtrunA17_Chr1g0199551 79.603 706 144 0 20 725 17 722 0.0 1193
Msa1079410 MtrunA17_Chr2g0326921 75.536 699 167 3 28 724 1 697 0.0 1074
Msa1079410 MtrunA17_Chr5g0448361 73.229 706 187 2 20 724 4 708 0.0 1071
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079410 AT2G37040.1 82.833 699 120 0 27 725 27 725 0.0 1235
Msa1079410 AT3G53260.1 82.684 693 120 0 33 725 25 717 0.0 1219
Msa1079410 AT3G10340.1 80.057 702 138 2 25 725 7 707 0.0 1170
Msa1079410 AT5G04230.1 73.563 696 168 6 33 725 12 694 0.0 1043
Msa1079410 AT5G04230.2 73.143 700 168 7 33 725 12 698 0.0 1037

Find 182 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTATGGAACACATTT+TGG 0.144231 7_2:+78593640 Msa1079410:CDS
CGATCCTCTTCTTGAATGTT+TGG 0.179959 7_2:+78594780 Msa1079410:CDS
CTTGCACTTTCAACCTCTTT+TGG 0.188235 7_2:-78594577 Msa1079420:three_prime_UTR
TCTCTTTGAGGCTAACATTT+TGG 0.190344 7_2:+78593502 Msa1079410:CDS
TTTCCATATTAATTTGTTAA+AGG 0.211342 7_2:-78594913 Msa1079420:three_prime_UTR
TTCCATTCTATCAAAATTCT+AGG 0.217935 7_2:+78590490 Msa1079410:five_prime_UTR
CTGCATCCATTGATCTTGTT+TGG 0.230681 7_2:-78594631 Msa1079420:three_prime_UTR
AATTGAGGCTGCTGCTATTA+TGG 0.231999 7_2:+78593628 Msa1079410:CDS
ATGCCTTTAACAAATTAATA+TGG 0.232041 7_2:+78594910 Msa1079410:three_prime_UTR
TTCCTATTTGTTAACTTTGT+TGG 0.249805 7_2:+78594824 Msa1079410:exon
AGTGCATATCTATCTTGTTT+TGG 0.256533 7_2:-78593722 Msa1079420:three_prime_UTR
ACCACAATGGCTTGGTCCTT+TGG 0.261854 7_2:+78593754 Msa1079410:CDS
AGCAATTGATTTAAGACATT+TGG 0.279595 7_2:+78594249 Msa1079410:CDS
TGCATCCATTGATCTTGTTT+GGG 0.293205 7_2:-78594630 Msa1079420:three_prime_UTR
CTTTATATAGAGGTTTGTTT+TGG 0.300397 7_2:-78590391 Msa1079420:three_prime_UTR
CTGCAAAGCACCACCTTGTT+TGG 0.301759 7_2:-78590951 Msa1079420:three_prime_UTR
AGAAATCCTAGCTTGGATTA+TGG 0.306393 7_2:+78594025 Msa1079410:CDS
CAACCAAGATGTGAACTCTT+TGG 0.306519 7_2:+78594144 Msa1079410:CDS
GTAGATCATGCACTAGTTAA+TGG 0.316257 7_2:+78594478 Msa1079410:CDS
GTTCCTCTTTCATACATTGC+TGG 0.323630 7_2:+78593305 Msa1079410:CDS
AACTTTCAAGGAACACCTAT+TGG 0.329701 7_2:+78593881 Msa1079410:CDS
AGGAATTAGATTTGAAATCT+TGG 0.330721 7_2:+78593202 Msa1079410:CDS
AACGGAACAGCTGTTGGTTC+CGG 0.347424 7_2:+78593464 Msa1079410:CDS
AACCAAGATGTGAACTCTTT+GGG 0.363040 7_2:+78594145 Msa1079410:CDS
GTCAAATGATCGGTAAATTC+AGG 0.365364 7_2:-78593578 Msa1079420:three_prime_UTR
CTACTAGCAGAAAGATTTGA+AGG 0.365979 7_2:-78594004 Msa1079420:three_prime_UTR
TTGATCTTGTTTGGGATTGT+TGG 0.367656 7_2:-78594622 Msa1079420:three_prime_UTR
AGCTTCTATTGTTCTCTTTG+AGG 0.369188 7_2:+78593490 Msa1079410:CDS
TGCACAATGTACTGAAAATT+CGG 0.376077 7_2:-78595032 Msa1079420:three_prime_UTR
GATCCTCTTCTTGAATGTTT+GGG 0.377705 7_2:+78594781 Msa1079410:CDS
TGATCTTGTTTGGGATTGTT+GGG 0.385272 7_2:-78594621 Msa1079420:three_prime_UTR
CTTTGGACGTGGGTTGTAAC+CGG 0.385789 7_2:-78594109 Msa1079420:three_prime_UTR
TACCACCACACAACAAATAA+AGG 0.386653 7_2:+78590513 Msa1079410:five_prime_UTR
GAAGGTCTTGCCCTTGTTAA+CGG 0.392707 7_2:+78593446 Msa1079410:CDS
GAGTTAAGGCCAGCAGTGAC+TGG 0.396808 7_2:+78590852 Msa1079410:CDS
ATGAAGCTGATCCTTTGAAT+TGG 0.399923 7_2:+78590651 Msa1079410:CDS
ACACTCCTCCAAGGTTATTC+AGG 0.400512 7_2:+78593182 Msa1079410:CDS
TACGGTGTCACCACCGGGTT+CGG 0.400782 7_2:+78590908 Msa1079410:CDS
TCAAAAGCTCATGGACCATC+TGG 0.402456 7_2:+78593350 Msa1079410:CDS
AGTTATTGAGCTTTATATAG+AGG 0.405308 7_2:-78590401 Msa1079420:three_prime_UTR
AACCAACAAAGTTAACAAAT+AGG 0.407177 7_2:-78594826 Msa1079420:three_prime_UTR
TTCTTGAATGTTTGGGAGAG+TGG 0.413240 7_2:+78594788 Msa1079410:CDS
TGAAGCTGATCCTTTGAATT+GGG 0.415897 7_2:+78590652 Msa1079410:CDS
AATCAAGCAGAATGATTCAT+TGG 0.416820 7_2:-78590597 Msa1079420:three_prime_UTR
CGTGGTACAATCACAGCTTC+AGG 0.419451 7_2:+78593275 Msa1079410:CDS
CGTTTGGCTCTCGCATCAAT+TGG 0.423324 7_2:+78593923 Msa1079410:CDS
TAATCAATACTATTAAGATA+TGG 0.423342 7_2:+78590541 Msa1079410:exon
CAAGACGGACCACCGGCTTC+CGG 0.424699 7_2:-78590739 Msa1079420:three_prime_UTR
AATGCAGGAATATTCGGAAA+TGG 0.425314 7_2:+78593095 Msa1079410:CDS
ATCTGCTAGGGATGGAGTTA+AGG 0.427510 7_2:+78590838 Msa1079410:CDS
TAGCTTGGATTATGGTTTCA+AGG 0.427578 7_2:+78594033 Msa1079410:CDS
GTTGCAATATCTTGCAAATC+CGG 0.432091 7_2:+78594090 Msa1079410:CDS
ACAAGGGCAAGACCTTCTTT+TGG 0.432699 7_2:-78593440 Msa1079420:three_prime_UTR
CTAGGAACTGGTTTACTAAC+CGG 0.436001 7_2:+78594688 Msa1079410:CDS
ATATTGCAACTCAGAACAAT+AGG 0.444781 7_2:-78594077 Msa1079420:three_prime_UTR
GAGAACAATAGAAGCTAAAC+CGG 0.444891 7_2:-78593483 Msa1079420:three_prime_UTR
CGGAAGCCGGTGGTCCGTCT+TGG 0.445172 7_2:+78590740 Msa1079410:CDS
TTGCATGGTGGAAACTTTCA+AGG 0.445309 7_2:+78593869 Msa1079410:CDS
ATCCATGGATAATACACGTT+TGG 0.447022 7_2:+78593907 Msa1079410:CDS
GTGCGAGGTGGCGCCGAACC+CGG 0.448163 7_2:-78590921 Msa1079420:three_prime_UTR
GTGAGAGAGGAGCTAGGAAC+TGG 0.450724 7_2:+78594676 Msa1079410:CDS
AATGTCTTAAATCAATTGCT+TGG 0.454815 7_2:-78594246 Msa1079420:three_prime_UTR
GACATTGGAGGAAACTGAAC+TGG 0.455752 7_2:-78594946 Msa1079420:three_prime_UTR
CTCCATCACCCAGTCACTGC+TGG 0.457530 7_2:-78590861 Msa1079420:three_prime_UTR
ACTTGTTGAAAGTGGTTGAC+AGG 0.460419 7_2:+78594380 Msa1079410:CDS
TAACTCTTCCTTCACATCTC+AGG 0.461007 7_2:+78590419 Msa1079410:five_prime_UTR
AATTGATTTAAGACATTTGG+AGG 0.465528 7_2:+78594252 Msa1079410:CDS
TTCTTGAAACATCAATCAAA+GGG 0.465561 7_2:-78593838 Msa1079420:three_prime_UTR
TTATCCATGGATACTCCAAT+AGG 0.467287 7_2:-78593896 Msa1079420:three_prime_UTR
GCTGCTCAGCACTTTGGACG+TGG 0.467358 7_2:-78594120 Msa1079420:three_prime_UTR
ACTCTTACCATGGGTGTCAA+TGG 0.467649 7_2:+78594325 Msa1079410:CDS
TGCTAGTAGAAATCCTAGCT+TGG 0.468873 7_2:+78594018 Msa1079410:CDS
AAGCCGGTGGTCCGTCTTGG+TGG 0.472146 7_2:+78590743 Msa1079410:CDS
CTTTGCAGAAAGAACTCATC+AGG 0.476918 7_2:+78590966 Msa1079410:CDS
TTTGAATTACAACCAAAAGA+AGG 0.477960 7_2:+78593428 Msa1079410:CDS
ATCTAATTCCTGAATAACCT+TGG 0.478042 7_2:-78593190 Msa1079420:three_prime_UTR
TTTCTTGAAACATCAATCAA+AGG 0.480962 7_2:-78593839 Msa1079420:three_prime_UTR
AACCCAAAGAGTTCACATCT+TGG 0.486755 7_2:-78594147 Msa1079420:three_prime_UTR
ACTCCATGTTTACCTCTTCG+TGG 0.489021 7_2:+78593257 Msa1079410:CDS
GACAGTTACGGTGTCACCAC+CGG 0.492715 7_2:+78590902 Msa1079410:CDS
TCTCTCACAAACTTGTAAAG+TGG 0.494956 7_2:-78594661 Msa1079420:three_prime_UTR
CGAGACACTGACGATTTCTC+AGG 0.498607 7_2:+78590766 Msa1079410:CDS
AAATGTCATTTCACCGGGTG+AGG 0.499354 7_2:+78594714 Msa1079410:CDS
TACAAGTTTCACCGTGACAT+TGG 0.499546 7_2:-78594961 Msa1079420:three_prime_UTR
TGCACATGACCATGGTGTGC+AGG 0.506601 7_2:+78590802 Msa1079410:CDS
ACAATCCCAAACAAGATCAA+TGG 0.508299 7_2:+78594625 Msa1079410:CDS
AGCTTGGATTATGGTTTCAA+GGG 0.508311 7_2:+78594034 Msa1079410:CDS
GGTTGTGCTGCTCAGCACTT+TGG 0.510888 7_2:-78594126 Msa1079420:three_prime_UTR
AGCGTATGGTGGAGGAGTAC+CGG 0.511195 7_2:+78590720 Msa1079410:CDS
CAACAGCTGTTCCGTTAACA+AGG 0.515867 7_2:-78593457 Msa1079420:three_prime_UTR
AACAAAGGCACGGACAGTTA+CGG 0.520670 7_2:+78590890 Msa1079410:CDS
GAAGACCCTCTTGCCAAAAG+AGG 0.521788 7_2:+78594564 Msa1079410:CDS
TTCCTTTATTTGTTGTGTGG+TGG 0.524448 7_2:-78590515 Msa1079420:three_prime_UTR
CTTGTTAACGGAACAGCTGT+TGG 0.526260 7_2:+78593458 Msa1079410:CDS
GCATTAAGTACTTCTCCAGA+TGG 0.530623 7_2:-78593365 Msa1079420:three_prime_UTR
CGGAGAAAATGTCATTTCAC+CGG 0.530856 7_2:+78594708 Msa1079410:CDS
TGGAGCTGTCTGAATCTGCT+AGG 0.530940 7_2:+78590825 Msa1079410:CDS
TACATTGCTGGTTTACTCAC+CGG 0.531102 7_2:+78593317 Msa1079410:CDS
CAACTTGTGTGTCAAATGAT+CGG 0.535020 7_2:-78593588 Msa1079420:three_prime_UTR
AACACCTATTGGAGTATCCA+TGG 0.535388 7_2:+78593892 Msa1079410:CDS
AGCCAAACGTGTATTATCCA+TGG 0.537118 7_2:-78593909 Msa1079420:three_prime_UTR
GGCCAGCAGTGACTGGGTGA+TGG 0.539190 7_2:+78590859 Msa1079410:CDS
CAAGGGAGCTGAAATTGCCA+TGG 0.539446 7_2:+78594051 Msa1079410:CDS
CAAAGTTAACAAATAGGAAG+AGG 0.539814 7_2:-78594820 Msa1079420:three_prime_UTR
ACCATGGTCATGTGCAGCAA+TGG 0.541335 7_2:-78590795 Msa1079420:three_prime_UTR
AGAACTTCACCACAATGGCT+TGG 0.541972 7_2:+78593746 Msa1079410:CDS
AAACCAGCAATGTATGAAAG+AGG 0.542459 7_2:-78593308 Msa1079420:three_prime_UTR
CTCAGAACAATAGGAAGCCA+TGG 0.547381 7_2:-78594068 Msa1079420:three_prime_UTR
AGACCAAATTCAAAAGCTCA+TGG 0.549535 7_2:+78593341 Msa1079410:CDS
AAGTTTCACCGTGACATTGG+AGG 0.550709 7_2:-78594958 Msa1079420:three_prime_UTR
ACTTTACAAGTTTGTGAGAG+AGG 0.552652 7_2:+78594663 Msa1079410:CDS
ATGTTCCTTTATTTGTTGTG+TGG 0.553831 7_2:-78590518 Msa1079420:three_prime_UTR
TTTGTTAAGGAGCTTAGTGA+TGG 0.555678 7_2:-78593228 Msa1079420:three_prime_UTR
TTGAAACCATAATCCAAGCT+AGG 0.555782 7_2:-78594031 Msa1079420:three_prime_UTR
CTGCTCAGCACTTTGGACGT+GGG 0.561652 7_2:-78594119 Msa1079420:three_prime_UTR
TCAAGAAACAAAGCTTTGCA+TGG 0.562486 7_2:+78593854 Msa1079410:CDS
GATCTCTCTCTCGATTGACT+TGG 0.563471 7_2:-78593798 Msa1079420:three_prime_UTR
AAGCACCACCTTGTTTGGTA+CGG 0.564097 7_2:-78590946 Msa1079420:three_prime_UTR
TAATTCCTGAATAACCTTGG+AGG 0.564767 7_2:-78593187 Msa1079420:three_prime_UTR
GGTGGAGGAGTACCGGAAGC+CGG 0.566790 7_2:+78590727 Msa1079410:CDS
CTGTCTGAATCTGCTAGGGA+TGG 0.567492 7_2:+78590830 Msa1079410:CDS
ACACCACCCTGGTCAAATTG+AGG 0.572511 7_2:+78593613 Msa1079410:CDS
GCTGCTCTTGTTGCCGTGTG+TGG 0.574124 7_2:-78593140 Msa1079420:three_prime_UTR
AAGTTTGTGAGAGAGGAGCT+AGG 0.574471 7_2:+78594670 Msa1079410:CDS
CTTGTTGAAAGTGGTTGACA+GGG 0.574600 7_2:+78594381 Msa1079410:CDS
TTCAGTTTCCTCCAATGTCA+CGG 0.576016 7_2:+78594950 Msa1079410:three_prime_UTR
GCAGCAGCCTCAATTTGACC+AGG 0.576243 7_2:-78593620 Msa1079420:three_prime_UTR
AACGGGTATGTAGCGCTACA+AGG 0.577825 7_2:-78594430 Msa1079420:three_prime_UTR
TTTGGTACGGCGGTGCGAGG+TGG 0.578567 7_2:-78590933 Msa1079420:three_prime_UTR
GCTGCCACACCCCAATTCAA+AGG 0.581598 7_2:-78590662 Msa1079420:three_prime_UTR
TCGCCACCAAGACGGACCAC+CGG 0.582161 7_2:-78590746 Msa1079420:three_prime_UTR
TCGCACCGCCGTACCAAACA+AGG 0.582783 7_2:+78590938 Msa1079410:CDS
CATGAGCTGAAGGATCTCAA+TGG 0.583537 7_2:-78594197 Msa1079420:three_prime_UTR
TGAGGTGAAGCGTATGGTGG+AGG 0.584737 7_2:+78590712 Msa1079410:CDS
GCCATTGCTGCACATGACCA+TGG 0.585263 7_2:+78590794 Msa1079410:CDS
CAAAAGAGGTTGAAAGTGCA+AGG 0.585617 7_2:+78594578 Msa1079410:CDS
ACCAAAGGACCAAGCCATTG+TGG 0.586572 7_2:-78593755 Msa1079420:three_prime_UTR
TGATCCTTTGAATTGGGGTG+TGG 0.587095 7_2:+78590658 Msa1079410:CDS
AGGTGGAAGACATGAGCTGA+AGG 0.588332 7_2:-78594207 Msa1079420:three_prime_UTR
GTGGCAGCTGAGGCAATGAA+AGG 0.593497 7_2:+78590677 Msa1079410:CDS
TCTCCCAAACATTCAAGAAG+AGG 0.593567 7_2:-78594784 Msa1079420:three_prime_UTR
GTGAATTTCCTGAGATGTGA+AGG 0.593727 7_2:-78590427 Msa1079420:three_prime_UTR
AGTTAAGGCCAGCAGTGACT+GGG 0.595378 7_2:+78590853 Msa1079410:CDS
CACCACCTTGTTTGGTACGG+CGG 0.598168 7_2:-78590943 Msa1079420:three_prime_UTR
TTGTTTGGTACGGCGGTGCG+AGG 0.600854 7_2:-78590936 Msa1079420:three_prime_UTR
AATCTAATCACTTCAACCAA+AGG 0.605646 7_2:-78593770 Msa1079420:three_prime_UTR
CACTTAGAACTTCACCACAA+TGG 0.606171 7_2:+78593741 Msa1079410:CDS
GGAGCTGTCTGAATCTGCTA+GGG 0.606450 7_2:+78590826 Msa1079410:CDS
AGTTTGTCACACTCCTCACC+CGG 0.607601 7_2:-78594727 Msa1079420:three_prime_UTR
TGGGTTTCCACTCTCATATG+CGG 0.609080 7_2:-78594602 Msa1079420:three_prime_UTR
ACAGTTACGGTGTCACCACC+GGG 0.611533 7_2:+78590903 Msa1079410:CDS
GAATTGGGGTGTGGCAGCTG+AGG 0.617765 7_2:+78590667 Msa1079410:CDS
AAGTTCTCCATTGACACCCA+TGG 0.622303 7_2:-78594332 Msa1079420:three_prime_UTR
AGAAACAAAGCTTTGCATGG+TGG 0.624866 7_2:+78593857 Msa1079410:CDS
AAATCACACACTACCACACA+CGG 0.624885 7_2:+78593127 Msa1079410:CDS
GCATAGTGCAATCAAGAAGG+TGG 0.625147 7_2:-78594224 Msa1079420:three_prime_UTR
GCAAGGACCGCATATGAGAG+TGG 0.625862 7_2:+78594595 Msa1079410:CDS
TTGGCATAGTGCAATCAAGA+AGG 0.626488 7_2:-78594227 Msa1079420:three_prime_UTR
GACACTGACGATTTCTCAGG+TGG 0.626830 7_2:+78590769 Msa1079410:CDS
CCTTGATGAGGTGAAGCGTA+TGG 0.628479 7_2:+78590706 Msa1079410:CDS
GGAGAAAATGTCATTTCACC+GGG 0.629782 7_2:+78594709 Msa1079410:CDS
TGTGTTGATTCTCACTAGCA+TGG 0.632917 7_2:-78593162 Msa1079420:three_prime_UTR
AGAATCAACACACTCCTCCA+AGG 0.638928 7_2:+78593173 Msa1079410:CDS
GAAGCTGATCCTTTGAATTG+GGG 0.639983 7_2:+78590653 Msa1079410:CDS
GAAAGGAAGTCACCTTGATG+AGG 0.640226 7_2:+78590694 Msa1079410:CDS
GCTGTGATTGTACCACGAAG+AGG 0.642050 7_2:-78593269 Msa1079420:three_prime_UTR
GGAGGAGTACCGGAAGCCGG+TGG 0.645003 7_2:+78590730 Msa1079410:CDS
GAATGTTTGGGAGAGTGGAA+CGG 0.650182 7_2:+78594793 Msa1079410:CDS
CCATACGCTTCACCTCATCA+AGG 0.653785 7_2:-78590706 Msa1079420:three_prime_UTR
CACAAGTTGAAACACCACCC+TGG 0.660975 7_2:+78593602 Msa1079410:CDS
AAGAGGTAAACATGGAGTGA+CGG 0.670467 7_2:-78593252 Msa1079420:three_prime_UTR
TGATGAGGTGAAGCGTATGG+TGG 0.671300 7_2:+78590709 Msa1079410:CDS
TCAGTGTCTCGCCACCAAGA+CGG 0.673504 7_2:-78590754 Msa1079420:three_prime_UTR
GTACCACGAAGAGGTAAACA+TGG 0.683183 7_2:-78593260 Msa1079420:three_prime_UTR
AACAGCTGTTCCGTTAACAA+GGG 0.686202 7_2:-78593456 Msa1079420:three_prime_UTR
GGAGAGTATGAACAAAGGCA+CGG 0.688439 7_2:+78590880 Msa1079410:CDS
CAGCCTCAATTTGACCAGGG+TGG 0.690386 7_2:-78593616 Msa1079420:three_prime_UTR
ACAGCTCCACCTGCACACCA+TGG 0.693221 7_2:-78590811 Msa1079420:three_prime_UTR
ACATGACCATGGTGTGCAGG+TGG 0.694429 7_2:+78590805 Msa1079410:CDS
CAGCAGCCTCAATTTGACCA+GGG 0.707184 7_2:-78593619 Msa1079420:three_prime_UTR
GTGATGGAGAGTATGAACAA+AGG 0.730510 7_2:+78590875 Msa1079410:CDS
CACCGCCGTACCAAACAAGG+TGG 0.735748 7_2:+78590941 Msa1079410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTGTATATTAATTTTTTT+AGG + chr7_2:78591207-78591226 Msa1079410:intron 10.0%
!!! ATCTTTAAAATTAAAACAAA+TGG + chr7_2:78591296-78591315 Msa1079410:intron 10.0%
!! AACATTCTATATAAAAAAAA+CGG - chr7_2:78591351-78591370 Msa1079420:intron 10.0%
!!! GATATAATTTTAATAGATTT+TGG - chr7_2:78591640-78591659 Msa1079420:intron 10.0%
!!! TTTATTTATTTTATGAACAA+GGG - chr7_2:78591678-78591697 Msa1079420:intron 10.0%
!!! ATTTATTTATTTTATGAACA+AGG - chr7_2:78591679-78591698 Msa1079420:intron 10.0%
!!! TTTTAAGAAAATGATAATAA+TGG + chr7_2:78592540-78592559 Msa1079410:intron 10.0%
!! TTTAAGAAAATGATAATAAT+GGG + chr7_2:78592541-78592560 Msa1079410:intron 10.0%
!!! TATGTGATATTTTTTTTAAT+GGG - chr7_2:78592576-78592595 Msa1079420:intron 10.0%
!!! TTATGTGATATTTTTTTTAA+TGG - chr7_2:78592577-78592596 Msa1079420:intron 10.0%
!! TAATCAATACTATTAAGATA+TGG + chr7_2:78590541-78590560 Msa1079410:exon 15.0%
!!! TTTTGATATAATTTTTTCCA+TGG + chr7_2:78591029-78591048 Msa1079410:intron 15.0%
!! TTAAAATTAAAACAAATGGT+AGG + chr7_2:78591300-78591319 Msa1079410:intron 15.0%
!! TAAAATTAAAACAAATGGTA+GGG + chr7_2:78591301-78591320 Msa1079410:intron 15.0%
!! ATAAAAAAGTAAGTTTCTTT+AGG - chr7_2:78591462-78591481 Msa1079420:intron 15.0%
!!! AACAAGAGTATTTTTATAAT+TGG - chr7_2:78592920-78592939 Msa1079420:intron 15.0%
!!! TTTCCATATTAATTTGTTAA+AGG - chr7_2:78594916-78594935 Msa1079420:three_prime_UTR 15.0%
!!! TGAAACTTGTAATTTATTTT+AGG + chr7_2:78594973-78594992 Msa1079410:three_prime_UTR 15.0%
!! TTCTTAAATTGTCCTTTAAT+TGG + chr7_2:78591173-78591192 Msa1079410:intron 20.0%
!! AGTATTAGTAATCCAATTAA+AGG - chr7_2:78591188-78591207 Msa1079420:intron 20.0%
!! CTTGAATTGTTTATCAAAAT+CGG - chr7_2:78591768-78591787 Msa1079420:intron 20.0%
!! AATTGAGTTTATGTAATATC+TGG - chr7_2:78591916-78591935 Msa1079420:intron 20.0%
!!! TACATGAATTGAATTTCTTT+TGG + chr7_2:78591992-78592011 Msa1079410:intron 20.0%
!! ATGATTGAATTGAATTGAAT+TGG + chr7_2:78592020-78592039 Msa1079410:intron 20.0%
!! TTTACATGATCTCATAATAT+AGG + chr7_2:78592462-78592481 Msa1079410:intron 20.0%
!!! TGATATTTTTTTTAATGGGT+TGG - chr7_2:78592572-78592591 Msa1079420:intron 20.0%
!!! TTTACTTACATTGCTTTTAT+AGG + chr7_2:78592828-78592847 Msa1079410:intron 20.0%
!! AAGTAAGAAGAATAAGTATT+AGG - chr7_2:78593056-78593075 Msa1079420:intron 20.0%
!! AAGTGTATCAAAAATCATAT+AGG + chr7_2:78594881-78594900 Msa1079410:three_prime_UTR 20.0%
!! ATGCCTTTAACAAATTAATA+TGG + chr7_2:78594910-78594929 Msa1079410:three_prime_UTR 20.0%
!!! CTTTATATAGAGGTTTGTTT+TGG - chr7_2:78590394-78590413 Msa1079420:three_prime_UTR 25.0%
!! AGTTATTGAGCTTTATATAG+AGG - chr7_2:78590404-78590423 Msa1079420:three_prime_UTR 25.0%
! TTCCATTCTATCAAAATTCT+AGG + chr7_2:78590490-78590509 Msa1079410:five_prime_UTR 25.0%
!!! TACCTAGAATTTTGATAGAA+TGG - chr7_2:78590495-78590514 Msa1079420:three_prime_UTR 25.0%
! TACATTCTTATGAAAATCCA+TGG - chr7_2:78591049-78591068 Msa1079420:intron 25.0%
! ATATAGAAATCACAGAAACA+CGG - chr7_2:78591843-78591862 Msa1079420:intron 25.0%
! TTACATAAACTCAATTCACA+TGG + chr7_2:78591920-78591939 Msa1079410:intron 25.0%
! TACATAAACTCAATTCACAT+GGG + chr7_2:78591921-78591940 Msa1079410:intron 25.0%
! AACTCTACTTATCTTATCAT+TGG + chr7_2:78592048-78592067 Msa1079410:intron 25.0%
! ACACAAGTTACATATACAAT+TGG + chr7_2:78592095-78592114 Msa1079410:intron 25.0%
!! AATCCATGCTAAAATTTTGT+AGG + chr7_2:78592164-78592183 Msa1079410:intron 25.0%
!!! TAACCTACAAAATTTTAGCA+TGG - chr7_2:78592170-78592189 Msa1079420:intron 25.0%
! TTCAATTCTTTGTGTGAAAT+TGG - chr7_2:78592214-78592233 Msa1079420:intron 25.0%
! AATTTCACACAAAGAATTGA+AGG + chr7_2:78592213-78592232 Msa1079410:intron 25.0%
! AAACACAAGAATAACCATTA+AGG + chr7_2:78592366-78592385 Msa1079410:intron 25.0%
! AACACAAGAATAACCATTAA+GGG + chr7_2:78592367-78592386 Msa1079410:intron 25.0%
! TTAGACAAAAATACCCTTAA+TGG - chr7_2:78592383-78592402 Msa1079420:intron 25.0%
! AATATCACATAATGCAAATC+AGG + chr7_2:78592585-78592604 Msa1079410:intron 25.0%
! ATATCACATAATGCAAATCA+GGG + chr7_2:78592586-78592605 Msa1079410:intron 25.0%
! AAAATGAACATGGTCAAATA+TGG - chr7_2:78592755-78592774 Msa1079420:intron 25.0%
!! TTTTTGAATGCAGGAATATT+CGG + chr7_2:78593089-78593108 Msa1079410:CDS 25.0%
!! AGGAATTAGATTTGAAATCT+TGG + chr7_2:78593202-78593221 Msa1079410:CDS 25.0%
!!! TGCAAAAGAAGCTTTTAATT+TGG + chr7_2:78593385-78593404 Msa1079410:CDS 25.0%
! TTTGAATTACAACCAAAAGA+AGG + chr7_2:78593428-78593447 Msa1079410:CDS 25.0%
! TTCTTGAAACATCAATCAAA+GGG - chr7_2:78593841-78593860 Msa1079420:three_prime_UTR 25.0%
! TTTCTTGAAACATCAATCAA+AGG - chr7_2:78593842-78593861 Msa1079420:three_prime_UTR 25.0%
!! GTTAATGACTTTTACAACAA+TGG + chr7_2:78593977-78593996 Msa1079410:CDS 25.0%
! AATGTCTTAAATCAATTGCT+TGG - chr7_2:78594249-78594268 Msa1079420:three_prime_UTR 25.0%
!! AGCAATTGATTTAAGACATT+TGG + chr7_2:78594249-78594268 Msa1079410:CDS 25.0%
!! AATTGATTTAAGACATTTGG+AGG + chr7_2:78594252-78594271 Msa1079410:CDS 25.0%
!! TTCCTATTTGTTAACTTTGT+TGG + chr7_2:78594824-78594843 Msa1079410:exon 25.0%
! AACCAACAAAGTTAACAAAT+AGG - chr7_2:78594829-78594848 Msa1079420:three_prime_UTR 25.0%
!!! TATATAGAGGTTTGTTTTGG+AGG - chr7_2:78590391-78590410 Msa1079420:three_prime_UTR 30.0%
!! ATGTTCCTTTATTTGTTGTG+TGG - chr7_2:78590521-78590540 Msa1079420:three_prime_UTR 30.0%
AATCAAGCAGAATGATTCAT+TGG - chr7_2:78590600-78590619 Msa1079420:three_prime_UTR 30.0%
GATAGAATGCAAATTGAGAA+TGG - chr7_2:78591005-78591024 Msa1079420:intron 30.0%
!!! GGTGTAACTAGATTTTTTTG+GGG - chr7_2:78591618-78591637 Msa1079420:intron 30.0%
!!! GGGTGTAACTAGATTTTTTT+GGG - chr7_2:78591619-78591638 Msa1079420:intron 30.0%
!!! TGGGTGTAACTAGATTTTTT+TGG - chr7_2:78591620-78591639 Msa1079420:intron 30.0%
TTCCTAAATACAAGTGAACT+GGG - chr7_2:78591957-78591976 Msa1079420:intron 30.0%
ATTCCTAAATACAAGTGAAC+TGG - chr7_2:78591958-78591977 Msa1079420:intron 30.0%
!!! AAGGGTATTTTTGTCTAAAG+TGG + chr7_2:78592385-78592404 Msa1079410:intron 30.0%
!! AGGGTATTTTTGTCTAAAGT+GGG + chr7_2:78592386-78592405 Msa1079410:intron 30.0%
TGATCTCATAATATAGGTGT+TGG + chr7_2:78592468-78592487 Msa1079410:intron 30.0%
TCCATATTTGATGTTGTGTA+AGG + chr7_2:78592636-78592655 Msa1079410:intron 30.0%
TCCTTACACAACATCAAATA+TGG - chr7_2:78592640-78592659 Msa1079420:intron 30.0%
AACATGATCGAAAATGAACA+TGG - chr7_2:78592765-78592784 Msa1079420:intron 30.0%
AAACGGTTTAACTAGTAAAC+TGG - chr7_2:78592788-78592807 Msa1079420:intron 30.0%
ATCTAATTCCTGAATAACCT+TGG - chr7_2:78593193-78593212 Msa1079420:three_prime_UTR 30.0%
!!! AAAGAAGCTTTTAATTTGGC+TGG + chr7_2:78593389-78593408 Msa1079410:CDS 30.0%
! ATTTTTGCTGAAGTTATGCA+AGG + chr7_2:78593551-78593570 Msa1079410:CDS 30.0%
! TTTTTGCTGAAGTTATGCAA+GGG + chr7_2:78593552-78593571 Msa1079410:CDS 30.0%
! TGCTATTATGGAACACATTT+TGG + chr7_2:78593640-78593659 Msa1079410:CDS 30.0%
! ATTATGGAACACATTTTGGA+CGG + chr7_2:78593644-78593663 Msa1079410:CDS 30.0%
!! AGTGCATATCTATCTTGTTT+TGG - chr7_2:78593725-78593744 Msa1079420:three_prime_UTR 30.0%
AATCTAATCACTTCAACCAA+AGG - chr7_2:78593773-78593792 Msa1079420:three_prime_UTR 30.0%
ATATTGCAACTCAGAACAAT+AGG - chr7_2:78594080-78594099 Msa1079420:three_prime_UTR 30.0%
!! CTTTTTCACAGAATCTTGAA+GGG - chr7_2:78594360-78594379 Msa1079420:three_prime_UTR 30.0%
!! TCTTTTTCACAGAATCTTGA+AGG - chr7_2:78594361-78594380 Msa1079420:three_prime_UTR 30.0%
!! TGAAAAAGACTTGTTGAAAG+TGG + chr7_2:78594372-78594391 Msa1079410:CDS 30.0%
!!! TCAAAAGATTGCTACTTTTG+AGG + chr7_2:78594534-78594553 Msa1079410:CDS 30.0%
! AACTATTTTCAGCTATGTGT+CGG + chr7_2:78594746-78594765 Msa1079410:CDS 30.0%
CAAAGTTAACAAATAGGAAG+AGG - chr7_2:78594823-78594842 Msa1079420:three_prime_UTR 30.0%
TGCACAATGTACTGAAAATT+CGG - chr7_2:78595035-78595054 Msa1079420:three_prime_UTR 30.0%
TACCACCACACAACAAATAA+AGG + chr7_2:78590513-78590532 Msa1079410:five_prime_UTR 35.0%
!! TTCCTTTATTTGTTGTGTGG+TGG - chr7_2:78590518-78590537 Msa1079420:three_prime_UTR 35.0%
ATGAAGCTGATCCTTTGAAT+TGG + chr7_2:78590651-78590670 Msa1079410:CDS 35.0%
TGAAGCTGATCCTTTGAATT+GGG + chr7_2:78590652-78590671 Msa1079410:CDS 35.0%
AAAAACGGAAGTAAAGTGAG+TGG - chr7_2:78591336-78591355 Msa1079420:intron 35.0%
TTTATGAACAAGGGCTTTCT+CGG - chr7_2:78591669-78591688 Msa1079420:intron 35.0%
!! TTTTGATGGATGTTTGTGAG+AGG - chr7_2:78591741-78591760 Msa1079420:intron 35.0%
!!! TCAAAATCGGTCACTTTTGA+TGG - chr7_2:78591755-78591774 Msa1079420:intron 35.0%
AACCCAGTTCACTTGTATTT+AGG + chr7_2:78591952-78591971 Msa1079410:intron 35.0%
! TGTGTTATTCCTAGATTACG+TGG - chr7_2:78592080-78592099 Msa1079420:intron 35.0%
!!! ATTGGCCTTCTTCATTTTGA+TGG + chr7_2:78592113-78592132 Msa1079410:intron 35.0%
TGGGTGTAACTGAAAGTTTA+TGG + chr7_2:78592405-78592424 Msa1079410:intron 35.0%
GGGTGTAACTGAAAGTTTAT+GGG + chr7_2:78592406-78592425 Msa1079410:intron 35.0%
GGTGTAACTGAAAGTTTATG+GGG + chr7_2:78592407-78592426 Msa1079410:intron 35.0%
TGATGTTGTGTAAGGAAGAT+AGG + chr7_2:78592644-78592663 Msa1079410:intron 35.0%
CAAATCCTTCTTCTTCTTGT+CGG + chr7_2:78592990-78593009 Msa1079410:intron 35.0%
!!! CTTCTTACTTCTTGTTTTCC+AGG + chr7_2:78593066-78593085 Msa1079410:intron 35.0%
! TTTTCCAGGTTTTTGAATGC+AGG + chr7_2:78593080-78593099 Msa1079410:intron 35.0%
TATTCCTGCATTCAAAAACC+TGG - chr7_2:78593087-78593106 Msa1079420:three_prime_UTR 35.0%
AATGCAGGAATATTCGGAAA+TGG + chr7_2:78593095-78593114 Msa1079410:CDS 35.0%
TAATTCCTGAATAACCTTGG+AGG - chr7_2:78593190-78593209 Msa1079420:three_prime_UTR 35.0%
TTTGTTAAGGAGCTTAGTGA+TGG - chr7_2:78593231-78593250 Msa1079420:three_prime_UTR 35.0%
AAACCAGCAATGTATGAAAG+AGG - chr7_2:78593311-78593330 Msa1079420:three_prime_UTR 35.0%
!! AGCTTTTGAATTTGGTCTTC+CGG - chr7_2:78593339-78593358 Msa1079420:three_prime_UTR 35.0%
AGACCAAATTCAAAAGCTCA+TGG + chr7_2:78593341-78593360 Msa1079410:CDS 35.0%
GAGAACAATAGAAGCTAAAC+CGG - chr7_2:78593486-78593505 Msa1079420:three_prime_UTR 35.0%
AGCTTCTATTGTTCTCTTTG+AGG + chr7_2:78593490-78593509 Msa1079410:CDS 35.0%
!!! TCTCTTTGAGGCTAACATTT+TGG + chr7_2:78593502-78593521 Msa1079410:CDS 35.0%
GTCAAATGATCGGTAAATTC+AGG - chr7_2:78593581-78593600 Msa1079420:three_prime_UTR 35.0%
CAACTTGTGTGTCAAATGAT+CGG - chr7_2:78593591-78593610 Msa1079420:three_prime_UTR 35.0%
TCAAGAAACAAAGCTTTGCA+TGG + chr7_2:78593854-78593873 Msa1079410:CDS 35.0%
AACTTTCAAGGAACACCTAT+TGG + chr7_2:78593881-78593900 Msa1079410:CDS 35.0%
TTATCCATGGATACTCCAAT+AGG - chr7_2:78593899-78593918 Msa1079420:three_prime_UTR 35.0%
ATCCATGGATAATACACGTT+TGG + chr7_2:78593907-78593926 Msa1079410:CDS 35.0%
CTACTAGCAGAAAGATTTGA+AGG - chr7_2:78594007-78594026 Msa1079420:three_prime_UTR 35.0%
AGAAATCCTAGCTTGGATTA+TGG + chr7_2:78594025-78594044 Msa1079410:CDS 35.0%
TTGAAACCATAATCCAAGCT+AGG - chr7_2:78594034-78594053 Msa1079420:three_prime_UTR 35.0%
TAGCTTGGATTATGGTTTCA+AGG + chr7_2:78594033-78594052 Msa1079410:CDS 35.0%
AGCTTGGATTATGGTTTCAA+GGG + chr7_2:78594034-78594053 Msa1079410:CDS 35.0%
GTTGCAATATCTTGCAAATC+CGG + chr7_2:78594090-78594109 Msa1079410:CDS 35.0%
AACCAAGATGTGAACTCTTT+GGG + chr7_2:78594145-78594164 Msa1079410:CDS 35.0%
!! CTTTTTGGCAACTTGACTTA+CGG - chr7_2:78594305-78594324 Msa1079420:three_prime_UTR 35.0%
!! TGCCTTAGTTTTTGACTCAA+CGG - chr7_2:78594451-78594470 Msa1079420:three_prime_UTR 35.0%
TCAAAAACTAAGGCAAGTGT+TGG + chr7_2:78594456-78594475 Msa1079410:CDS 35.0%
GTAGATCATGCACTAGTTAA+TGG + chr7_2:78594478-78594497 Msa1079410:CDS 35.0%
! TGATCTTGTTTGGGATTGTT+GGG - chr7_2:78594624-78594643 Msa1079420:three_prime_UTR 35.0%
! TTGATCTTGTTTGGGATTGT+TGG - chr7_2:78594625-78594644 Msa1079420:three_prime_UTR 35.0%
ACAATCCCAAACAAGATCAA+TGG + chr7_2:78594625-78594644 Msa1079410:CDS 35.0%
! TGCATCCATTGATCTTGTTT+GGG - chr7_2:78594633-78594652 Msa1079420:three_prime_UTR 35.0%
TCTCTCACAAACTTGTAAAG+TGG - chr7_2:78594664-78594683 Msa1079420:three_prime_UTR 35.0%
ACTTTACAAGTTTGTGAGAG+AGG + chr7_2:78594663-78594682 Msa1079410:CDS 35.0%
! ACTATTTTCAGCTATGTGTC+GGG + chr7_2:78594747-78594766 Msa1079410:CDS 35.0%
GATCCTCTTCTTGAATGTTT+GGG + chr7_2:78594781-78594800 Msa1079410:CDS 35.0%
TAACTCTTCCTTCACATCTC+AGG + chr7_2:78590419-78590438 Msa1079410:five_prime_UTR 40.0%
GTGAATTTCCTGAGATGTGA+AGG - chr7_2:78590430-78590449 Msa1079420:three_prime_UTR 40.0%
GAAGCTGATCCTTTGAATTG+GGG + chr7_2:78590653-78590672 Msa1079410:CDS 40.0%
! GTGATGGAGAGTATGAACAA+AGG + chr7_2:78590875-78590894 Msa1079410:CDS 40.0%
CTTTGCAGAAAGAACTCATC+AGG + chr7_2:78590966-78590985 Msa1079410:CDS 40.0%
! CGTCTATTTTCGTAAGTACG+TGG + chr7_2:78592303-78592322 Msa1079410:intron 40.0%
!!! TGTTTTGATTTCCGTCCAAG+TGG - chr7_2:78592351-78592370 Msa1079420:intron 40.0%
TGTAAGGAAGATAGGACAAG+TGG + chr7_2:78592652-78592671 Msa1079410:intron 40.0%
GTAAGGAAGATAGGACAAGT+GGG + chr7_2:78592653-78592672 Msa1079410:intron 40.0%
CCAATCGTTGAAGTCAAACA+TGG - chr7_2:78592717-78592736 Msa1079420:intron 40.0%
! CCATGTTTGACTTCAACGAT+TGG + chr7_2:78592714-78592733 Msa1079410:intron 40.0%
!! TCTTGTCGGTGTCTGTTTTA+TGG + chr7_2:78593004-78593023 Msa1079410:intron 40.0%
AAATCACACACTACCACACA+CGG + chr7_2:78593127-78593146 Msa1079410:CDS 40.0%
!! TGTGTTGATTCTCACTAGCA+TGG - chr7_2:78593165-78593184 Msa1079420:three_prime_UTR 40.0%
!!! ATGGAGTGACGGTTTTGTTA+AGG - chr7_2:78593244-78593263 Msa1079420:three_prime_UTR 40.0%
AAGAGGTAAACATGGAGTGA+CGG - chr7_2:78593255-78593274 Msa1079420:three_prime_UTR 40.0%
GTTCCTCTTTCATACATTGC+TGG + chr7_2:78593305-78593324 Msa1079410:CDS 40.0%
!! TACATTGCTGGTTTACTCAC+CGG + chr7_2:78593317-78593336 Msa1079410:CDS 40.0%
! GGTCCATGAGCTTTTGAATT+TGG - chr7_2:78593347-78593366 Msa1079420:three_prime_UTR 40.0%
GCATTAAGTACTTCTCCAGA+TGG - chr7_2:78593368-78593387 Msa1079420:three_prime_UTR 40.0%
AACAGCTGTTCCGTTAACAA+GGG - chr7_2:78593459-78593478 Msa1079420:three_prime_UTR 40.0%
AATTGAGGCTGCTGCTATTA+TGG + chr7_2:78593628-78593647 Msa1079410:CDS 40.0%
!!! TCTTGTTTTGGCTTCTGCAA+AGG - chr7_2:78593713-78593732 Msa1079420:three_prime_UTR 40.0%
CACTTAGAACTTCACCACAA+TGG + chr7_2:78593741-78593760 Msa1079410:CDS 40.0%
AGAAACAAAGCTTTGCATGG+TGG + chr7_2:78593857-78593876 Msa1079410:CDS 40.0%
! TTGCATGGTGGAAACTTTCA+AGG + chr7_2:78593869-78593888 Msa1079410:CDS 40.0%
! AACACCTATTGGAGTATCCA+TGG + chr7_2:78593892-78593911 Msa1079410:CDS 40.0%
AGCCAAACGTGTATTATCCA+TGG - chr7_2:78593912-78593931 Msa1079420:three_prime_UTR 40.0%
TGCTAGTAGAAATCCTAGCT+TGG + chr7_2:78594018-78594037 Msa1079410:CDS 40.0%
CAACCAAGATGTGAACTCTT+TGG + chr7_2:78594144-78594163 Msa1079410:CDS 40.0%
AACCCAAAGAGTTCACATCT+TGG - chr7_2:78594150-78594169 Msa1079420:three_prime_UTR 40.0%
TTGGCATAGTGCAATCAAGA+AGG - chr7_2:78594230-78594249 Msa1079420:three_prime_UTR 40.0%
TGCCAAAAAGACTCTTACCA+TGG + chr7_2:78594315-78594334 Msa1079410:CDS 40.0%
GCCAAAAAGACTCTTACCAT+GGG + chr7_2:78594316-78594335 Msa1079410:CDS 40.0%
! ACCCATGGTAAGAGTCTTTT+TGG - chr7_2:78594320-78594339 Msa1079420:three_prime_UTR 40.0%
! ACTTGTTGAAAGTGGTTGAC+AGG + chr7_2:78594380-78594399 Msa1079410:CDS 40.0%
CTTGTTGAAAGTGGTTGACA+GGG + chr7_2:78594381-78594400 Msa1079410:CDS 40.0%
ACCCGTTGAGTCAAAAACTA+AGG + chr7_2:78594446-78594465 Msa1079410:CDS 40.0%
!! GCCTTAGTTTTTGACTCAAC+GGG - chr7_2:78594450-78594469 Msa1079420:three_prime_UTR 40.0%
! TTCAACCTCTTTTGGCAAGA+GGG - chr7_2:78594572-78594591 Msa1079420:three_prime_UTR 40.0%
! TTTCAACCTCTTTTGGCAAG+AGG - chr7_2:78594573-78594592 Msa1079420:three_prime_UTR 40.0%
! CTTGCACTTTCAACCTCTTT+TGG - chr7_2:78594580-78594599 Msa1079420:three_prime_UTR 40.0%
! CAAAAGAGGTTGAAAGTGCA+AGG + chr7_2:78594578-78594597 Msa1079410:CDS 40.0%
CTGCATCCATTGATCTTGTT+TGG - chr7_2:78594634-78594653 Msa1079420:three_prime_UTR 40.0%
! CTAGGAACTGGTTTACTAAC+CGG + chr7_2:78594688-78594707 Msa1079410:CDS 40.0%
! CGGTGAAATGACATTTTCTC+CGG - chr7_2:78594710-78594729 Msa1079420:three_prime_UTR 40.0%
! CGGAGAAAATGTCATTTCAC+CGG + chr7_2:78594708-78594727 Msa1079410:CDS 40.0%
! GGAGAAAATGTCATTTCACC+GGG + chr7_2:78594709-78594728 Msa1079410:CDS 40.0%
! CTATTTTCAGCTATGTGTCG+GGG + chr7_2:78594748-78594767 Msa1079410:CDS 40.0%
CGATCCTCTTCTTGAATGTT+TGG + chr7_2:78594780-78594799 Msa1079410:CDS 40.0%
TCTCCCAAACATTCAAGAAG+AGG - chr7_2:78594787-78594806 Msa1079420:three_prime_UTR 40.0%
TTCTTGAATGTTTGGGAGAG+TGG + chr7_2:78594788-78594807 Msa1079410:CDS 40.0%
TTCAGTTTCCTCCAATGTCA+CGG + chr7_2:78594950-78594969 Msa1079410:three_prime_UTR 40.0%
TACAAGTTTCACCGTGACAT+TGG - chr7_2:78594964-78594983 Msa1079420:three_prime_UTR 40.0%
TGATCCTTTGAATTGGGGTG+TGG + chr7_2:78590658-78590677 Msa1079410:CDS 45.0%
GAAAGGAAGTCACCTTGATG+AGG + chr7_2:78590694-78590713 Msa1079410:CDS 45.0%
ATCTGCTAGGGATGGAGTTA+AGG + chr7_2:78590838-78590857 Msa1079410:CDS 45.0%
! GGAGAGTATGAACAAAGGCA+CGG + chr7_2:78590880-78590899 Msa1079410:CDS 45.0%
! AACAAAGGCACGGACAGTTA+CGG + chr7_2:78590890-78590909 Msa1079410:CDS 45.0%
! AAGCACCACCTTGTTTGGTA+CGG - chr7_2:78590949-78590968 Msa1079420:three_prime_UTR 45.0%
TGGTTCAAGCCACGTAATCT+AGG + chr7_2:78592068-78592087 Msa1079410:intron 45.0%
!! GGCCTTCTTCATTTTGATGG+AGG + chr7_2:78592116-78592135 Msa1079410:intron 45.0%
CGCCTCCATCAAAATGAAGA+AGG - chr7_2:78592121-78592140 Msa1079420:intron 45.0%
TGACGTATACCTCTACCACT+TGG + chr7_2:78592333-78592352 Msa1079410:intron 45.0%
GTATACCTCTACCACTTGGA+CGG + chr7_2:78592337-78592356 Msa1079410:intron 45.0%
CAAACATGGTATGCAGCAGA+TGG - chr7_2:78592703-78592722 Msa1079420:intron 45.0%
AGACACCGACAAGAAGAAGA+AGG - chr7_2:78592998-78593017 Msa1079420:intron 45.0%
AGAATCAACACACTCCTCCA+AGG + chr7_2:78593173-78593192 Msa1079410:CDS 45.0%
ACACTCCTCCAAGGTTATTC+AGG + chr7_2:78593182-78593201 Msa1079410:CDS 45.0%
ACTCCATGTTTACCTCTTCG+TGG + chr7_2:78593257-78593276 Msa1079410:CDS 45.0%
GTACCACGAAGAGGTAAACA+TGG - chr7_2:78593263-78593282 Msa1079420:three_prime_UTR 45.0%
TCAAAAGCTCATGGACCATC+TGG + chr7_2:78593350-78593369 Msa1079410:CDS 45.0%
! ACAAGGGCAAGACCTTCTTT+TGG - chr7_2:78593443-78593462 Msa1079420:three_prime_UTR 45.0%
GAAGGTCTTGCCCTTGTTAA+CGG + chr7_2:78593446-78593465 Msa1079410:CDS 45.0%
CAACAGCTGTTCCGTTAACA+AGG - chr7_2:78593460-78593479 Msa1079420:three_prime_UTR 45.0%
CTTGTTAACGGAACAGCTGT+TGG + chr7_2:78593458-78593477 Msa1079410:CDS 45.0%
AGAACTTCACCACAATGGCT+TGG + chr7_2:78593746-78593765 Msa1079410:CDS 45.0%
GATCTCTCTCTCGATTGACT+TGG - chr7_2:78593801-78593820 Msa1079420:three_prime_UTR 45.0%
CTCAGAACAATAGGAAGCCA+TGG - chr7_2:78594071-78594090 Msa1079420:three_prime_UTR 45.0%
CATGAGCTGAAGGATCTCAA+TGG - chr7_2:78594200-78594219 Msa1079420:three_prime_UTR 45.0%
GCATAGTGCAATCAAGAAGG+TGG - chr7_2:78594227-78594246 Msa1079420:three_prime_UTR 45.0%
ACTCTTACCATGGGTGTCAA+TGG + chr7_2:78594325-78594344 Msa1079410:CDS 45.0%
AAGTTCTCCATTGACACCCA+TGG - chr7_2:78594335-78594354 Msa1079420:three_prime_UTR 45.0%
TGGGTTTCCACTCTCATATG+CGG - chr7_2:78594605-78594624 Msa1079420:three_prime_UTR 45.0%
AAGTTTGTGAGAGAGGAGCT+AGG + chr7_2:78594670-78594689 Msa1079410:CDS 45.0%
! AAATGTCATTTCACCGGGTG+AGG + chr7_2:78594714-78594733 Msa1079410:CDS 45.0%
GAATGTTTGGGAGAGTGGAA+CGG + chr7_2:78594793-78594812 Msa1079410:CDS 45.0%
GACATTGGAGGAAACTGAAC+TGG - chr7_2:78594949-78594968 Msa1079420:three_prime_UTR 45.0%
AAGTTTCACCGTGACATTGG+AGG - chr7_2:78594961-78594980 Msa1079420:three_prime_UTR 45.0%
!!! ACTTTAAAATTAAATTATTA+TGG + chr7_2:78591104-78591123 Msa1079410:intron 5.0%
!! CAAATTTAATTAATATAAAT+TGG + chr7_2:78591146-78591165 Msa1079410:intron 5.0%
!!! ATATAATTTTAATAGATTTT+GGG - chr7_2:78591639-78591658 Msa1079420:intron 5.0%
!!! TATAAATTTAGTTTATAAAA+CGG - chr7_2:78592805-78592824 Msa1079420:intron 5.0%
!!! AATTATATGATTTTTATTTT+AGG + chr7_2:78592967-78592986 Msa1079410:intron 5.0%
CCATACGCTTCACCTCATCA+AGG - chr7_2:78590709-78590728 Msa1079420:three_prime_UTR 50.0%
CCTTGATGAGGTGAAGCGTA+TGG + chr7_2:78590706-78590725 Msa1079410:CDS 50.0%
TGATGAGGTGAAGCGTATGG+TGG + chr7_2:78590709-78590728 Msa1079410:CDS 50.0%
CGAGACACTGACGATTTCTC+AGG + chr7_2:78590766-78590785 Msa1079410:CDS 50.0%
GACACTGACGATTTCTCAGG+TGG + chr7_2:78590769-78590788 Msa1079410:CDS 50.0%
ACCATGGTCATGTGCAGCAA+TGG - chr7_2:78590798-78590817 Msa1079420:three_prime_UTR 50.0%
TGGAGCTGTCTGAATCTGCT+AGG + chr7_2:78590825-78590844 Msa1079410:CDS 50.0%
GGAGCTGTCTGAATCTGCTA+GGG + chr7_2:78590826-78590845 Msa1079410:CDS 50.0%
CTGTCTGAATCTGCTAGGGA+TGG + chr7_2:78590830-78590849 Msa1079410:CDS 50.0%
AGTTAAGGCCAGCAGTGACT+GGG + chr7_2:78590853-78590872 Msa1079410:CDS 50.0%
! CTGCAAAGCACCACCTTGTT+TGG - chr7_2:78590954-78590973 Msa1079420:three_prime_UTR 50.0%
!! CATTTTGATGGAGGCGTGAC+AGG + chr7_2:78592125-78592144 Msa1079410:intron 50.0%
GATTTCCGTCCAAGTGGTAG+AGG - chr7_2:78592345-78592364 Msa1079420:intron 50.0%
GCTGTGATTGTACCACGAAG+AGG - chr7_2:78593272-78593291 Msa1079420:three_prime_UTR 50.0%
CGTGGTACAATCACAGCTTC+AGG + chr7_2:78593275-78593294 Msa1079410:CDS 50.0%
!! AACGGAACAGCTGTTGGTTC+CGG + chr7_2:78593464-78593483 Msa1079410:CDS 50.0%
! CACAAGTTGAAACACCACCC+TGG + chr7_2:78593602-78593621 Msa1079410:CDS 50.0%
ACACCACCCTGGTCAAATTG+AGG + chr7_2:78593613-78593632 Msa1079410:CDS 50.0%
CAGCAGCCTCAATTTGACCA+GGG - chr7_2:78593622-78593641 Msa1079420:three_prime_UTR 50.0%
!! ACCACAATGGCTTGGTCCTT+TGG + chr7_2:78593754-78593773 Msa1079410:CDS 50.0%
ACCAAAGGACCAAGCCATTG+TGG - chr7_2:78593758-78593777 Msa1079420:three_prime_UTR 50.0%
!! CGTTTGGCTCTCGCATCAAT+TGG + chr7_2:78593923-78593942 Msa1079410:CDS 50.0%
CAAGGGAGCTGAAATTGCCA+TGG + chr7_2:78594051-78594070 Msa1079410:CDS 50.0%
! CTTTGGACGTGGGTTGTAAC+CGG - chr7_2:78594112-78594131 Msa1079420:three_prime_UTR 50.0%
AGGTGGAAGACATGAGCTGA+AGG - chr7_2:78594210-78594229 Msa1079420:three_prime_UTR 50.0%
AACGGGTATGTAGCGCTACA+AGG - chr7_2:78594433-78594452 Msa1079420:three_prime_UTR 50.0%
GAAGACCCTCTTGCCAAAAG+AGG + chr7_2:78594564-78594583 Msa1079410:CDS 50.0%
AGTTTGTCACACTCCTCACC+CGG - chr7_2:78594730-78594749 Msa1079420:three_prime_UTR 50.0%
GCTGCCACACCCCAATTCAA+AGG - chr7_2:78590665-78590684 Msa1079420:three_prime_UTR 55.0%
GTGGCAGCTGAGGCAATGAA+AGG + chr7_2:78590677-78590696 Msa1079410:CDS 55.0%
TGAGGTGAAGCGTATGGTGG+AGG + chr7_2:78590712-78590731 Msa1079410:CDS 55.0%
! AGCGTATGGTGGAGGAGTAC+CGG + chr7_2:78590720-78590739 Msa1079410:CDS 55.0%
TCAGTGTCTCGCCACCAAGA+CGG - chr7_2:78590757-78590776 Msa1079420:three_prime_UTR 55.0%
GCCATTGCTGCACATGACCA+TGG + chr7_2:78590794-78590813 Msa1079410:CDS 55.0%
TGCACATGACCATGGTGTGC+AGG + chr7_2:78590802-78590821 Msa1079410:CDS 55.0%
ACATGACCATGGTGTGCAGG+TGG + chr7_2:78590805-78590824 Msa1079410:CDS 55.0%
GAGTTAAGGCCAGCAGTGAC+TGG + chr7_2:78590852-78590871 Msa1079410:CDS 55.0%
!! GACAGTTACGGTGTCACCAC+CGG + chr7_2:78590902-78590921 Msa1079410:CDS 55.0%
!! ACAGTTACGGTGTCACCACC+GGG + chr7_2:78590903-78590922 Msa1079410:CDS 55.0%
! CACCACCTTGTTTGGTACGG+CGG - chr7_2:78590946-78590965 Msa1079420:three_prime_UTR 55.0%
CAGCCTCAATTTGACCAGGG+TGG - chr7_2:78593619-78593638 Msa1079420:three_prime_UTR 55.0%
GCAGCAGCCTCAATTTGACC+AGG - chr7_2:78593623-78593642 Msa1079420:three_prime_UTR 55.0%
CTGCTCAGCACTTTGGACGT+GGG - chr7_2:78594122-78594141 Msa1079420:three_prime_UTR 55.0%
! GGTTGTGCTGCTCAGCACTT+TGG - chr7_2:78594129-78594148 Msa1079420:three_prime_UTR 55.0%
GCAAGGACCGCATATGAGAG+TGG + chr7_2:78594595-78594614 Msa1079410:CDS 55.0%
GTGAGAGAGGAGCTAGGAAC+TGG + chr7_2:78594676-78594695 Msa1079410:CDS 55.0%
GAATTGGGGTGTGGCAGCTG+AGG + chr7_2:78590667-78590686 Msa1079410:CDS 60.0%
ACAGCTCCACCTGCACACCA+TGG - chr7_2:78590814-78590833 Msa1079420:three_prime_UTR 60.0%
CTCCATCACCCAGTCACTGC+TGG - chr7_2:78590864-78590883 Msa1079420:three_prime_UTR 60.0%
!! TACGGTGTCACCACCGGGTT+CGG + chr7_2:78590908-78590927 Msa1079410:CDS 60.0%
TTGTTTGGTACGGCGGTGCG+AGG - chr7_2:78590939-78590958 Msa1079420:three_prime_UTR 60.0%
TCGCACCGCCGTACCAAACA+AGG + chr7_2:78590938-78590957 Msa1079410:CDS 60.0%
CACCGCCGTACCAAACAAGG+TGG + chr7_2:78590941-78590960 Msa1079410:CDS 60.0%
GCTGCTCTTGTTGCCGTGTG+TGG - chr7_2:78593143-78593162 Msa1079420:three_prime_UTR 60.0%
GCTGCTCAGCACTTTGGACG+TGG - chr7_2:78594123-78594142 Msa1079420:three_prime_UTR 60.0%
!! GGTGGAGGAGTACCGGAAGC+CGG + chr7_2:78590727-78590746 Msa1079410:CDS 65.0%
!! CAAGACGGACCACCGGCTTC+CGG - chr7_2:78590742-78590761 Msa1079420:three_prime_UTR 65.0%
AAGCCGGTGGTCCGTCTTGG+TGG + chr7_2:78590743-78590762 Msa1079410:CDS 65.0%
TCGCCACCAAGACGGACCAC+CGG - chr7_2:78590749-78590768 Msa1079420:three_prime_UTR 65.0%
GGCCAGCAGTGACTGGGTGA+TGG + chr7_2:78590859-78590878 Msa1079410:CDS 65.0%
TTTGGTACGGCGGTGCGAGG+TGG - chr7_2:78590936-78590955 Msa1079420:three_prime_UTR 65.0%
!! GGAGGAGTACCGGAAGCCGG+TGG + chr7_2:78590730-78590749 Msa1079410:CDS 70.0%
CGGAAGCCGGTGGTCCGTCT+TGG + chr7_2:78590740-78590759 Msa1079410:CDS 70.0%
! GTGCGAGGTGGCGCCGAACC+CGG - chr7_2:78590924-78590943 Msa1079420:three_prime_UTR 75.0%
!! CGAGGTGGCGCCGAACCCGG+TGG - chr7_2:78590921-78590940 Msa1079420:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78590363 78595083 78590363 ID=Msa1079410;Name=Msa1079410
chr7_2 mRNA 78590363 78595083 78590363 ID=Msa1079410-mRNA-1;Parent=Msa1079410;Name=Msa1079410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|246|725
chr7_2 exon 78590363 78590987 78590363 ID=Msa1079410-mRNA-1:exon:19556;Parent=Msa1079410-mRNA-1
chr7_2 exon 78593088 78595083 78593088 ID=Msa1079410-mRNA-1:exon:19557;Parent=Msa1079410-mRNA-1
chr7_2 five_prime_UTR 78590363 78590559 78590363 ID=Msa1079410-mRNA-1:five_prime_utr;Parent=Msa1079410-mRNA-1
chr7_2 CDS 78590560 78590987 78590560 ID=Msa1079410-mRNA-1:cds;Parent=Msa1079410-mRNA-1
chr7_2 CDS 78593088 78594837 78593088 ID=Msa1079410-mRNA-1:cds;Parent=Msa1079410-mRNA-1
chr7_2 three_prime_UTR 78594838 78595083 78594838 ID=Msa1079410-mRNA-1:three_prime_utr;Parent=Msa1079410-mRNA-1
Gene Sequence

>Msa1079410

ATGGAAACAATATCAGCAGCAATCACAAAAAACAATGCCAATGAATCATTCTGCTTGATTCATGCAAAGAATAATAATAACATGAAAGTGAATGAAGCTGATCCTTTGAATTGGGGTGTGGCAGCTGAGGCAATGAAAGGAAGTCACCTTGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCGGTGGTCCGTCTTGGTGGCGAGACACTGACGATTTCTCAGGTGGCTGCCATTGCTGCACATGACCATGGTGTGCAGGTGGAGCTGTCTGAATCTGCTAGGGATGGAGTTAAGGCCAGCAGTGACTGGGTGATGGAGAGTATGAACAAAGGCACGGACAGTTACGGTGTCACCACCGGGTTCGGCGCCACCTCGCACCGCCGTACCAAACAAGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTTTGAATGCAGGAATATTCGGAAATGGAACAGAGTCAAATCACACACTACCACACACGGCAACAAGAGCAGCCATGCTAGTGAGAATCAACACACTCCTCCAAGGTTATTCAGGAATTAGATTTGAAATCTTGGAAGCCATCACTAAGCTCCTTAACAAAACCGTCACTCCATGTTTACCTCTTCGTGGTACAATCACAGCTTCAGGAGATTTAGTTCCTCTTTCATACATTGCTGGTTTACTCACCGGAAGACCAAATTCAAAAGCTCATGGACCATCTGGAGAAGTACTTAATGCAAAAGAAGCTTTTAATTTGGCTGGAATCAATGCTGAGTTCTTTGAATTACAACCAAAAGAAGGTCTTGCCCTTGTTAACGGAACAGCTGTTGGTTCCGGTTTAGCTTCTATTGTTCTCTTTGAGGCTAACATTTTGGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTTATGCAAGGGAAACCTGAATTTACCGATCATTTGACACACAAGTTGAAACACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGACGGAAGTGCTTATGTCAAAGCAGCTAAGAAGTTGCATGAGATAGATCCTTTGCAGAAGCCAAAACAAGATAGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTTTGGTTGAAGTGATTAGATTCTCTACCAAGTCAATCGAGAGAGAGATCAACTCTGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCTTTGCATGGTGGAAACTTTCAAGGAACACCTATTGGAGTATCCATGGATAATACACGTTTGGCTCTCGCATCAATTGGCAAACTTATGTTTGCTCAATTCTCTGAGCTTGTTAATGACTTTTACAACAATGGATTGCCTTCAAATCTTTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGTTCTGAGTTGCAATATCTTGCAAATCCGGTTACAACCCACGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTGCTAGAAAAACAAATGAAGCCATTGAGATCCTTCAGCTCATGTCTTCCACCTTCTTGATTGCACTATGCCAAGCAATTGATTTAAGACATTTGGAGGAGAACTTGAAAAACTCAGTCAAGAACACCGTAAGTCAAGTTGCCAAAAAGACTCTTACCATGGGTGTCAATGGAGAACTTCACCCTTCAAGATTCTGTGAAAAAGACTTGTTGAAAGTGGTTGACAGGGAGCATGTATTTGCTTATATTGATGATCCTTGTAGCGCTACATACCCGTTGAGTCAAAAACTAAGGCAAGTGTTGGTAGATCATGCACTAGTTAATGGAGAGAGTGAGAAGAATTTTAACACTTCAATCTTTCAAAAGATTGCTACTTTTGAGGAAGAGTTGAAGACCCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGACCGCATATGAGAGTGGAAACCCAACAATCCCAAACAAGATCAATGGATGCAGATCTTATCCACTTTACAAGTTTGTGAGAGAGGAGCTAGGAACTGGTTTACTAACCGGAGAAAATGTCATTTCACCGGGTGAGGAGTGTGACAAACTATTTTCAGCTATGTGTCGGGGAAAAATCATCGATCCTCTTCTTGAATGTTTGGGAGAGTGGAACGGTGCTCCTCTTCCTATTTGTTAA
Protein sequence

>Msa1079410

METISAAITKNNANESFCLIHAKNNNNMKVNEADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVQVELSESARDGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNKTVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEVLNAKEAFNLAGINAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKTNEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLSQKLRQVLVDHALVNGESEKNFNTSIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCRGKIIDPLLECLGEWNGAPLPIC*