AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1168540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168540 MtrunA17_Chr7g0264351 96.414 725 13 2 160 872 1 724 0.0 1432
Msa1168540 MtrunA17_Chr7g0264351 74.874 199 9 3 1 158 519 717 9.51e-84 283
Msa1168540 MtrunA17_Chr7g0264311 95.724 725 18 2 160 872 1 724 0.0 1424
Msa1168540 MtrunA17_Chr7g0264311 74.372 199 10 3 1 158 519 717 3.61e-83 282
Msa1168540 MtrunA17_Chr7g0264341 95.448 725 20 2 160 872 1 724 0.0 1421
Msa1168540 MtrunA17_Chr7g0264341 74.372 199 10 3 1 158 519 717 3.33e-83 282
Msa1168540 MtrunA17_Chr1g0181091 87.483 719 69 2 166 872 3 712 0.0 1298
Msa1168540 MtrunA17_Chr1g0181091 68.342 199 22 3 1 158 507 705 1.01e-76 264
Msa1168540 MtrunA17_Chr1g0199551 78.470 706 140 1 179 872 17 722 0.0 1169
Msa1168540 MtrunA17_Chr1g0199551 60.302 199 38 3 1 158 517 715 4.11e-65 232
Msa1168540 MtrunA17_Chr2g0326921 74.605 697 165 3 187 871 1 697 0.0 1051
Msa1168540 MtrunA17_Chr2g0326921 50.500 200 57 4 1 158 492 691 6.72e-47 179
Msa1168540 MtrunA17_Chr5g0448361 72.096 706 183 2 179 871 4 708 0.0 1050
Msa1168540 MtrunA17_Chr5g0448361 51.010 198 56 3 1 157 504 701 1.94e-49 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168540 AT2G37040.1 81.259 699 119 1 186 872 27 725 0.0 1207
Msa1168540 AT2G37040.1 60.804 199 37 2 1 158 520 718 3.20e-67 238
Msa1168540 AT3G53260.1 81.241 693 118 1 192 872 25 717 0.0 1193
Msa1168540 AT3G53260.1 59.799 199 39 3 1 158 512 710 4.95e-67 238
Msa1168540 AT3G10340.1 78.632 702 136 3 184 872 7 707 0.0 1141
Msa1168540 AT3G10340.1 55.779 199 47 3 1 158 502 700 3.69e-57 209
Msa1168540 AT5G04230.1 72.270 696 165 7 192 872 12 694 0.0 1016
Msa1168540 AT5G04230.1 47.692 195 59 5 1 158 499 687 2.05e-39 156
Msa1168540 AT5G04230.2 71.857 700 165 8 192 872 12 698 0.0 1011
Msa1168540 AT5G04230.2 47.692 195 59 5 1 158 503 691 2.10e-39 156

Find 195 sgRNAs with CRISPR-Local

Find 655 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTATGGAACACATTT+TGG 0.144231 7_4:+61178135 Msa1168540:CDS
CGATCCTCTTCTTGAATGTT+TGG 0.179959 7_4:+61179275 Msa1168540:CDS
CTTGCACTTTCAACCTCTTT+TGG 0.188235 7_4:-61179072 Msa1168510:three_prime_UTR
TCTCTTTGAGGCTAACATTT+TGG 0.190344 7_4:+61177997 Msa1168540:CDS
TTTCCATATTAATTTGTTAA+AGG 0.211342 7_4:-61179408 Msa1168510:three_prime_UTR
TGATCCTCTTCTTGAATGTT+TGG 0.214712 7_4:+61169159 Msa1168540:CDS
CTGCATCCATTGATCTTGTT+TGG 0.230681 7_4:-61179126 Msa1168510:three_prime_UTR
AATTGAGGCTGCTGCTATTA+TGG 0.231999 7_4:+61178123 Msa1168540:CDS
ATGCCTTTAACAAATTAATA+TGG 0.232041 7_4:+61179405 Msa1168540:three_prime_UTR
CTTGCACTTTCAACCTCTTT+TGG 0.237913 7_4:-61168956 Msa1168510:intron
TTCCTATTTGTTAACTTTGT+TGG 0.249805 7_4:+61179319 Msa1168540:exon
AGTGCATATCTATCTTGTTT+TGG 0.256533 7_4:-61178217 Msa1168510:three_prime_UTR
ACCACAATGGCTTGGTCCTT+TGG 0.261854 7_4:+61178249 Msa1168540:CDS
AGCAATTGATTTAAGACATT+TGG 0.279595 7_4:+61168630 Msa1168540:CDS
AGCAATTGATTTAAGACATT+TGG 0.279595 7_4:+61178744 Msa1168540:CDS
TGCATCCATTGATCTTGTTT+GGG 0.293205 7_4:-61179125 Msa1168510:three_prime_UTR
CTGCAAAGCACCACCTTGTT+TGG 0.301759 7_4:-61175495 Msa1168510:three_prime_UTR
AGAAATCCTAGCTTGGATTA+TGG 0.306393 7_4:+61178520 Msa1168540:CDS
CAACCAAGATGTGAACTCTT+TGG 0.306519 7_4:+61178639 Msa1168540:CDS
GTAGATCATGCACTAGTTAA+TGG 0.316257 7_4:+61168857 Msa1168540:CDS
GTAGATCATGCACTAGTTAA+TGG 0.316257 7_4:+61178973 Msa1168540:CDS
GTTCCTCTTTCATACATTGC+TGG 0.323630 7_4:+61177800 Msa1168540:CDS
AACTTTCAAGGAACACCTAT+TGG 0.329701 7_4:+61178376 Msa1168540:CDS
AGGAATTAGATTTGAAATCT+TGG 0.330721 7_4:+61177697 Msa1168540:CDS
AACGGAACAGCTGTTGGTTC+CGG 0.347424 7_4:+61177959 Msa1168540:CDS
AACCAAGATGTGAACTCTTT+GGG 0.363040 7_4:+61178640 Msa1168540:CDS
GATCCTCTTCTTGAATGTTT+GGG 0.364274 7_4:+61169160 Msa1168540:CDS
GTCAAATGATCGGTAAATTC+AGG 0.365364 7_4:-61178073 Msa1168510:three_prime_UTR
CTACTAGCAGAAAGATTTGA+AGG 0.365979 7_4:-61178499 Msa1168510:three_prime_UTR
TTGATCTTGTTTGGGATTGT+TGG 0.367656 7_4:-61179117 Msa1168510:three_prime_UTR
AGCTTCTATTGTTCTCTTTG+AGG 0.369188 7_4:+61177985 Msa1168540:CDS
GATCCTCTTCTTGAATGTTT+GGG 0.377705 7_4:+61179276 Msa1168540:CDS
TGATCTTGTTTGGGATTGTT+GGG 0.385272 7_4:-61179116 Msa1168510:three_prime_UTR
CTTTGGACGTGGGTTGTAAC+CGG 0.385789 7_4:-61178604 Msa1168510:three_prime_UTR
CAAATTTGTTAGAGAGGAGC+TGG 0.389494 7_4:+61169048 Msa1168540:CDS
GAAGGTCTTGCCCTTGTTAA+CGG 0.392707 7_4:+61177941 Msa1168540:CDS
GAGTTAAGGCCAGCAGTGAC+TGG 0.396808 7_4:+61175396 Msa1168540:CDS
ATGAAGCTGATCCTTTGAAT+TGG 0.399923 7_4:+61175195 Msa1168540:CDS
ACACTCCTCCAAGGTTATTC+AGG 0.400512 7_4:+61177677 Msa1168540:CDS
TACGGTGTCACCACCGGGTT+CGG 0.400782 7_4:+61175452 Msa1168540:CDS
TCAAAAGCTCATGGACCATC+TGG 0.402456 7_4:+61177845 Msa1168540:CDS
AACCAACAAAGTTAACAAAT+AGG 0.407177 7_4:-61179321 Msa1168510:three_prime_UTR
TTCTTGAATGTTTGGGAGAG+TGG 0.413240 7_4:+61169167 Msa1168540:CDS
TTCTTGAATGTTTGGGAGAG+TGG 0.413240 7_4:+61179283 Msa1168540:CDS
TGAAGCTGATCCTTTGAATT+GGG 0.415897 7_4:+61175196 Msa1168540:CDS
AATCAAGCAGAATGATTCAT+TGG 0.416820 7_4:-61175141 Msa1168510:intron
CGTGGTACAATCACAGCTTC+AGG 0.419451 7_4:+61177770 Msa1168540:CDS
CGTTTGGCTCTCGCATCAAT+TGG 0.423324 7_4:+61178418 Msa1168540:CDS
CAAGACGGACCACCGGCTTC+CGG 0.424699 7_4:-61175283 Msa1168510:three_prime_UTR
AATGCAGGAATATTCGGAAA+TGG 0.425314 7_4:+61177590 Msa1168540:CDS
ATCTGCTAGGGATGGAGTTA+AGG 0.427510 7_4:+61175382 Msa1168540:CDS
TAGCTTGGATTATGGTTTCA+AGG 0.427578 7_4:+61178528 Msa1168540:CDS
GTTGCAATATCTTGCAAATC+CGG 0.432091 7_4:+61178585 Msa1168540:CDS
ACAAGGGCAAGACCTTCTTT+TGG 0.432699 7_4:-61177935 Msa1168510:three_prime_UTR
CTAGGAACTGGTTTACTAAC+CGG 0.436001 7_4:+61179183 Msa1168540:CDS
GTTAGAGAGGAGCTGGGAAC+TGG 0.441278 7_4:+61169055 Msa1168540:CDS
ATATTGCAACTCAGAACAAT+AGG 0.444781 7_4:-61178572 Msa1168510:three_prime_UTR
GAGAACAATAGAAGCTAAAC+CGG 0.444891 7_4:-61177978 Msa1168510:three_prime_UTR
TTGCATGGTGGAAACTTTCA+AGG 0.445309 7_4:+61178364 Msa1168540:CDS
ATCCATGGATAATACACGTT+TGG 0.447022 7_4:+61178402 Msa1168540:CDS
GTGAGAGAGGAGCTAGGAAC+TGG 0.450724 7_4:+61179171 Msa1168540:CDS
AATGTCTTAAATCAATTGCT+TGG 0.454815 7_4:-61168627 Msa1168510:intron
AATGTCTTAAATCAATTGCT+TGG 0.454815 7_4:-61178741 Msa1168510:three_prime_UTR
GACATTGGAGGAAACTGAAC+TGG 0.455752 7_4:-61179441 Msa1168510:three_prime_UTR
TCTCTAACAAATTTGTAAAG+TGG 0.457184 7_4:-61169040 Msa1168510:intron
CTCCATCACCCAGTCACTGC+TGG 0.457530 7_4:-61175405 Msa1168510:three_prime_UTR
ACTCCATGTTTACCGCTTCG+TGG 0.459790 7_4:+61177752 Msa1168540:CDS
CTGGGAACTGGTTTACTAAC+CGG 0.460385 7_4:+61169067 Msa1168540:CDS
ACTTGTTGAAAGTGGTTGAC+AGG 0.460419 7_4:+61178875 Msa1168540:CDS
GTGTGAGGTGGCGCCGAACC+CGG 0.460603 7_4:-61175465 Msa1168510:three_prime_UTR
AATTGATTTAAGACATTTGG+AGG 0.465528 7_4:+61168633 Msa1168540:CDS
AATTGATTTAAGACATTTGG+AGG 0.465528 7_4:+61178747 Msa1168540:CDS
TTCTTGAAACATCAATCAAA+GGG 0.465561 7_4:-61178333 Msa1168510:three_prime_UTR
TTATCCATGGATACTCCAAT+AGG 0.467287 7_4:-61178391 Msa1168510:three_prime_UTR
GCTGCTCAGCACTTTGGACG+TGG 0.467358 7_4:-61178615 Msa1168510:three_prime_UTR
ACTCTTACCATGGGTGTCAA+TGG 0.467649 7_4:+61168706 Msa1168540:CDS
ACTCTTACCATGGGTGTCAA+TGG 0.467649 7_4:+61178820 Msa1168540:CDS
TGCTAGTAGAAATCCTAGCT+TGG 0.468873 7_4:+61178513 Msa1168540:CDS
CTTTGCAGAAAGAACTCATC+AGG 0.476918 7_4:+61175510 Msa1168540:CDS
TTTGAATTACAACCAAAAGA+AGG 0.477960 7_4:+61177923 Msa1168540:CDS
ATCTAATTCCTGAATAACCT+TGG 0.478042 7_4:-61177685 Msa1168510:three_prime_UTR
TTTCTTGAAACATCAATCAA+AGG 0.480962 7_4:-61178334 Msa1168510:three_prime_UTR
AACCCAAAGAGTTCACATCT+TGG 0.486755 7_4:-61178642 Msa1168510:three_prime_UTR
GACAGTTACGGTGTCACCAC+CGG 0.492715 7_4:+61175446 Msa1168540:CDS
TCTCTCACAAACTTGTAAAG+TGG 0.494956 7_4:-61179156 Msa1168510:three_prime_UTR
AAATGTCATTTCACCGGGTG+AGG 0.499354 7_4:+61169093 Msa1168540:CDS
AAATGTCATTTCACCGGGTG+AGG 0.499354 7_4:+61179209 Msa1168540:CDS
TACAAGTTTCACCGTGACAT+TGG 0.499546 7_4:-61179456 Msa1168510:three_prime_UTR
TGCACATGACCATGGTGTGC+AGG 0.506601 7_4:+61175346 Msa1168540:CDS
ACAATCCCAAACAAGATCAA+TGG 0.508299 7_4:+61179120 Msa1168540:CDS
AGCTTGGATTATGGTTTCAA+GGG 0.508311 7_4:+61178529 Msa1168540:CDS
GGTTGTGCTGCTCAGCACTT+TGG 0.510888 7_4:-61178621 Msa1168510:three_prime_UTR
AGCGTATGGTGGAGGAGTAC+CGG 0.511195 7_4:+61175264 Msa1168540:CDS
CAACAGCTGTTCCGTTAACA+AGG 0.515867 7_4:-61177952 Msa1168510:three_prime_UTR
AACAAAGGCACGGACAGTTA+CGG 0.520670 7_4:+61175434 Msa1168540:CDS
GAAGACCCTCTTGCCAAAAG+AGG 0.521788 7_4:+61168943 Msa1168540:CDS
GAAGACCCTCTTGCCAAAAG+AGG 0.521788 7_4:+61179059 Msa1168540:CDS
CTTGTTAACGGAACAGCTGT+TGG 0.526260 7_4:+61177953 Msa1168540:CDS
GCATTAAGTACTTCTCCAGA+TGG 0.530623 7_4:-61177860 Msa1168510:three_prime_UTR
CGGAGAAAATGTCATTTCAC+CGG 0.530856 7_4:+61169087 Msa1168540:CDS
CGGAGAAAATGTCATTTCAC+CGG 0.530856 7_4:+61179203 Msa1168540:CDS
TGGAGCTGTCTGAATCTGCT+AGG 0.530940 7_4:+61175369 Msa1168540:CDS
TACATTGCTGGTTTACTCAC+CGG 0.531102 7_4:+61177812 Msa1168540:CDS
CAACTTGTGTGTCAAATGAT+CGG 0.535020 7_4:-61178083 Msa1168510:three_prime_UTR
AACACCTATTGGAGTATCCA+TGG 0.535388 7_4:+61178387 Msa1168540:CDS
AGCCAAACGTGTATTATCCA+TGG 0.537118 7_4:-61178404 Msa1168510:three_prime_UTR
GGCCAGCAGTGACTGGGTGA+TGG 0.539190 7_4:+61175403 Msa1168540:CDS
CAAGGGAGCTGAAATTGCCA+TGG 0.539446 7_4:+61178546 Msa1168540:CDS
CAAAGTTAACAAATAGGAAG+AGG 0.539814 7_4:-61179315 Msa1168510:three_prime_UTR
ACCATGGTCATGTGCAGCAA+TGG 0.541335 7_4:-61175339 Msa1168510:three_prime_UTR
AGAACTTCACCACAATGGCT+TGG 0.541972 7_4:+61178241 Msa1168540:CDS
AAACCAGCAATGTATGAAAG+AGG 0.542459 7_4:-61177803 Msa1168510:three_prime_UTR
CTCAGAACAATAGGAAGCCA+TGG 0.547381 7_4:-61178563 Msa1168510:three_prime_UTR
AGACCAAATTCAAAAGCTCA+TGG 0.549535 7_4:+61177836 Msa1168540:CDS
AAGTTTCACCGTGACATTGG+AGG 0.550709 7_4:-61179453 Msa1168510:three_prime_UTR
ACTTTACAAGTTTGTGAGAG+AGG 0.552652 7_4:+61179158 Msa1168540:CDS
ACTTTACAAATTTGTTAGAG+AGG 0.553680 7_4:+61169042 Msa1168540:CDS
TTTGTTAAGGAGCTTAGTGA+TGG 0.555678 7_4:-61177723 Msa1168510:three_prime_UTR
TTGAAACCATAATCCAAGCT+AGG 0.555782 7_4:-61178526 Msa1168510:three_prime_UTR
GATCTCTCTCTCAATTGACT+TGG 0.558820 7_4:-61178293 Msa1168510:three_prime_UTR
CTGCTCAGCACTTTGGACGT+GGG 0.561652 7_4:-61178614 Msa1168510:three_prime_UTR
TCAAGAAACAAAGCTTTGCA+TGG 0.562486 7_4:+61178349 Msa1168540:CDS
AAGCACCACCTTGTTTGGTA+CGG 0.564097 7_4:-61175490 Msa1168510:three_prime_UTR
TAATTCCTGAATAACCTTGG+AGG 0.564767 7_4:-61177682 Msa1168510:three_prime_UTR
GGTGGAGGAGTACCGGAAGC+CGG 0.566790 7_4:+61175271 Msa1168540:CDS
CTGTCTGAATCTGCTAGGGA+TGG 0.567492 7_4:+61175374 Msa1168540:CDS
ACACCACCCTGGTCAAATTG+AGG 0.572511 7_4:+61178108 Msa1168540:CDS
GCTGCTCTTGTTGCCGTGTG+TGG 0.574124 7_4:-61177635 Msa1168510:three_prime_UTR
AAGTTTGTGAGAGAGGAGCT+AGG 0.574471 7_4:+61179165 Msa1168540:CDS
CTTGTTGAAAGTGGTTGACA+GGG 0.574600 7_4:+61178876 Msa1168540:CDS
TTCAGTTTCCTCCAATGTCA+CGG 0.576016 7_4:+61179445 Msa1168540:three_prime_UTR
GCAGCAGCCTCAATTTGACC+AGG 0.576243 7_4:-61178115 Msa1168510:three_prime_UTR
AACGGGTATGTAGCGCTACA+AGG 0.577825 7_4:-61178925 Msa1168510:three_prime_UTR
GCTGCCACACCCCAATTCAA+AGG 0.581598 7_4:-61175206 Msa1168510:three_prime_UTR
CATGAGCTGAAGGATCTCAA+TGG 0.583537 7_4:-61178692 Msa1168510:three_prime_UTR
TGAGGTGAAGCGTATGGTGG+AGG 0.584737 7_4:+61175256 Msa1168540:CDS
GCCATTGCTGCACATGACCA+TGG 0.585263 7_4:+61175338 Msa1168540:CDS
CAAAAGAGGTTGAAAGTGCA+AGG 0.585617 7_4:+61179073 Msa1168540:CDS
ACCAAAGGACCAAGCCATTG+TGG 0.586572 7_4:-61178250 Msa1168510:three_prime_UTR
TGATCCTTTGAATTGGGGTG+TGG 0.587095 7_4:+61175202 Msa1168540:CDS
GTCAAAACTCAGGCAAGTGT+TGG 0.587539 7_4:+61168835 Msa1168540:CDS
AGGTGGAAGACATGAGCTGA+AGG 0.588332 7_4:-61178702 Msa1168510:three_prime_UTR
TCACACCGCCGTACCAAACA+AGG 0.592067 7_4:+61175482 Msa1168540:CDS
AAATTTGTTAGAGAGGAGCT+GGG 0.592411 7_4:+61169049 Msa1168540:CDS
GTGGCAGCTGAGGCAATGAA+AGG 0.593497 7_4:+61175221 Msa1168540:CDS
TCTCCCAAACATTCAAGAAG+AGG 0.593567 7_4:-61169163 Msa1168510:intron
TCTCCCAAACATTCAAGAAG+AGG 0.593567 7_4:-61179279 Msa1168510:three_prime_UTR
CAAAAGAGGTTGAAAGTGCA+AGG 0.594086 7_4:+61168957 Msa1168540:CDS
AGTTAAGGCCAGCAGTGACT+GGG 0.595378 7_4:+61175397 Msa1168540:CDS
CACCACCTTGTTTGGTACGG+CGG 0.598168 7_4:-61175487 Msa1168510:three_prime_UTR
AATCTAATCACTTCAACCAA+AGG 0.605646 7_4:-61178265 Msa1168510:three_prime_UTR
CACTTAGAACTTCACCACAA+TGG 0.606171 7_4:+61178236 Msa1168540:CDS
GGAGCTGTCTGAATCTGCTA+GGG 0.606450 7_4:+61175370 Msa1168540:CDS
GAATGTTTGGGAGAGTGGAA+TGG 0.607071 7_4:+61169172 Msa1168540:CDS
GCAAAGTGCAATCAAGAAGG+TGG 0.607328 7_4:-61168605 Msa1168510:intron
AGTTTGTCACACTCCTCACC+CGG 0.607601 7_4:-61169106 Msa1168510:intron
AGTTTGTCACACTCCTCACC+CGG 0.607601 7_4:-61179222 Msa1168510:three_prime_UTR
TGGGTTTCCACTCTCATATG+CGG 0.609080 7_4:-61179097 Msa1168510:three_prime_UTR
ACAGTTACGGTGTCACCACC+GGG 0.611533 7_4:+61175447 Msa1168540:CDS
GAATTGGGGTGTGGCAGCTG+AGG 0.617765 7_4:+61175211 Msa1168540:CDS
GTACCACGAAGCGGTAAACA+TGG 0.618640 7_4:-61177755 Msa1168510:three_prime_UTR
TTGGCAAAGTGCAATCAAGA+AGG 0.618750 7_4:-61168608 Msa1168510:intron
TTTGGTACGGCGGTGTGAGG+TGG 0.622134 7_4:-61175477 Msa1168510:three_prime_UTR
AAGTTCTCCATTGACACCCA+TGG 0.622303 7_4:-61168713 Msa1168510:intron
AAGTTCTCCATTGACACCCA+TGG 0.622303 7_4:-61178827 Msa1168510:three_prime_UTR
AGAAACAAAGCTTTGCATGG+TGG 0.624866 7_4:+61178352 Msa1168540:CDS
AAATCACACACTACCACACA+CGG 0.624885 7_4:+61177622 Msa1168540:CDS
GCATAGTGCAATCAAGAAGG+TGG 0.625147 7_4:-61178719 Msa1168510:three_prime_UTR
GCAAGGACCGCATATGAGAG+TGG 0.625862 7_4:+61179090 Msa1168540:CDS
TTGGCATAGTGCAATCAAGA+AGG 0.626488 7_4:-61178722 Msa1168510:three_prime_UTR
CCTTGATGAGGTGAAGCGTA+TGG 0.628479 7_4:+61175250 Msa1168540:CDS
GGAGAAAATGTCATTTCACC+GGG 0.629782 7_4:+61169088 Msa1168540:CDS
GGAGAAAATGTCATTTCACC+GGG 0.629782 7_4:+61179204 Msa1168540:CDS
TGTGTTGATTCTCACTAGCA+TGG 0.632917 7_4:-61177657 Msa1168510:three_prime_UTR
AGAATCAACACACTCCTCCA+AGG 0.638928 7_4:+61177668 Msa1168540:CDS
GAAGCTGATCCTTTGAATTG+GGG 0.639983 7_4:+61175197 Msa1168540:CDS
GAAAGGCAGTCACCTTGATG+AGG 0.642522 7_4:+61175238 Msa1168540:CDS
TTGTTTGGTACGGCGGTGTG+AGG 0.643517 7_4:-61175480 Msa1168510:three_prime_UTR
GGAGGAGTACCGGAAGCCGG+TGG 0.645003 7_4:+61175274 Msa1168540:CDS
GAATGTTTGGGAGAGTGGAA+CGG 0.650182 7_4:+61179288 Msa1168540:CDS
CCATACGCTTCACCTCATCA+AGG 0.653785 7_4:-61175250 Msa1168510:three_prime_UTR
TACCCTTTGAGTCAAAACTC+AGG 0.654411 7_4:+61168825 Msa1168540:CDS
CACAAGTTGAAACACCACCC+TGG 0.660975 7_4:+61178097 Msa1168540:CDS
GCTGTGATTGTACCACGAAG+CGG 0.666263 7_4:-61177764 Msa1168510:three_prime_UTR
TGATGAGGTGAAGCGTATGG+TGG 0.671300 7_4:+61175253 Msa1168540:CDS
AAGCGGTAAACATGGAGTGA+CGG 0.683796 7_4:-61177747 Msa1168510:three_prime_UTR
AACAGCTGTTCCGTTAACAA+GGG 0.686202 7_4:-61177951 Msa1168510:three_prime_UTR
GGAGAGTATGAACAAAGGCA+CGG 0.688439 7_4:+61175424 Msa1168540:CDS
CAGCCTCAATTTGACCAGGG+TGG 0.690386 7_4:-61178111 Msa1168510:three_prime_UTR
ACAGCTCCACCTGCACACCA+TGG 0.693221 7_4:-61175355 Msa1168510:three_prime_UTR
ACATGACCATGGTGTGCAGG+TGG 0.694429 7_4:+61175349 Msa1168540:CDS
TGAGGTGGCGCCGAACCCGG+TGG 0.700925 7_4:-61175462 Msa1168510:three_prime_UTR
CAGCAGCCTCAATTTGACCA+GGG 0.707184 7_4:-61178114 Msa1168510:three_prime_UTR
GTGATGGAGAGTATGAACAA+AGG 0.730510 7_4:+61175419 Msa1168540:CDS
CACCGCCGTACCAAACAAGG+TGG 0.739310 7_4:+61175485 Msa1168540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATTAAAAAAAAAATTG+AGG + chr7_4:61169534-61169553 Msa1168540:intron 10.0%
!! ATATATAAATAGAAAGAAAA+AGG + chr7_4:61170846-61170865 Msa1168540:intron 10.0%
!!! GTCTTTTATTATTTATTTTT+AGG - chr7_4:61171413-61171432 Msa1168510:intron 10.0%
!! AATAAATAATAAAAGACATT+TGG + chr7_4:61171416-61171435 Msa1168540:intron 10.0%
!!! TCTTGTATATTAATTTTTTT+AGG + chr7_4:61175743-61175762 Msa1168540:intron 10.0%
!!! ATCTTTAAAATTAAAACAAA+TGG + chr7_4:61175832-61175851 Msa1168540:intron 10.0%
!! AACATTCTATATAAAAAAAA+CGG - chr7_4:61175887-61175906 Msa1168510:intron 10.0%
!!! GATATAATTTTAATAGATTT+TGG - chr7_4:61176174-61176193 Msa1168510:intron 10.0%
!!! TTTATTTATTTTATGAACAA+GGG - chr7_4:61176216-61176235 Msa1168510:intron 10.0%
!!! ATTTATTTATTTTATGAACA+AGG - chr7_4:61176217-61176236 Msa1168510:intron 10.0%
!!! TTTTAAGAAAATGATAATAA+TGG + chr7_4:61177034-61177053 Msa1168540:intron 10.0%
!! TTTAAGAAAATGATAATAAT+GGG + chr7_4:61177035-61177054 Msa1168540:intron 10.0%
!!! TATGTGATATTTTTTTTAAT+GGG - chr7_4:61177070-61177089 Msa1168510:intron 10.0%
!!! TTATGTGATATTTTTTTTAA+TGG - chr7_4:61177071-61177090 Msa1168510:intron 10.0%
!!! AAACTTCTAATTTACTTTTA+TGG + chr7_4:61169341-61169360 Msa1168540:intron 15.0%
!!! GTATAGTTTTTAAAATTTAG+AGG + chr7_4:61169573-61169592 Msa1168540:intron 15.0%
!!! TTTTTCAAATTTGATTTTTG+CGG - chr7_4:61170252-61170271 Msa1168510:intron 15.0%
!!! CATTTTTTTTTTTAACTTTG+CGG - chr7_4:61170366-61170385 Msa1168510:intron 15.0%
!!! CATTCTATTCATTTTTTTAA+GGG - chr7_4:61170504-61170523 Msa1168510:intron 15.0%
!! AAAGTAATTTACTTAGATAT+AGG - chr7_4:61170803-61170822 Msa1168510:intron 15.0%
!! ATATTGATACTTATTTCAAT+AGG + chr7_4:61172585-61172604 Msa1168540:intron 15.0%
!! TATTGATACTTATTTCAATA+GGG + chr7_4:61172586-61172605 Msa1168540:intron 15.0%
!!! TTTTGAAATATTAATAGAGT+CGG + chr7_4:61172997-61173016 Msa1168540:intron 15.0%
!! TAATGTTTATTTGAGTAAAA+TGG - chr7_4:61173363-61173382 Msa1168510:intron 15.0%
!!! TTCTAACTTTTAAAACAAAA+CGG - chr7_4:61173416-61173435 Msa1168510:intron 15.0%
!!! TTCATTATTTTTCTTTTGAT+AGG - chr7_4:61173792-61173811 Msa1168510:intron 15.0%
!! ATACTATAAAAATGATGTTA+TGG + chr7_4:61174269-61174288 Msa1168540:intron 15.0%
!! TAATCAATACTATTAAGATA+TGG + chr7_4:61175085-61175104 Msa1168540:intron 15.0%
!!! TTTTGATATAATTTTTTCCA+TGG + chr7_4:61175565-61175584 Msa1168540:intron 15.0%
!! TTAAAATTAAAACAAATGGT+AGG + chr7_4:61175836-61175855 Msa1168540:intron 15.0%
!! TAAAATTAAAACAAATGGTA+GGG + chr7_4:61175837-61175856 Msa1168540:intron 15.0%
!! ATAAAAAAGTAAGTTTCTTT+AGG - chr7_4:61175998-61176017 Msa1168510:intron 15.0%
!!! TACATGAAATGAATTTTTTT+TGG + chr7_4:61176529-61176548 Msa1168540:intron 15.0%
!!! AACAAGAGTATTTTTATAAT+TGG - chr7_4:61177414-61177433 Msa1168510:intron 15.0%
!!! TTTCCATATTAATTTGTTAA+AGG - chr7_4:61179411-61179430 Msa1168510:three_prime_UTR 15.0%
!!! TGAAACTTGTAATTTATTTT+AGG + chr7_4:61179468-61179487 Msa1168540:three_prime_UTR 15.0%
!! AAAAATAAATAAGTCTCCTT+AGG - chr7_4:61169383-61169402 Msa1168510:intron 20.0%
!!! AGGAGACTTATTTATTTTTT+TGG + chr7_4:61169384-61169403 Msa1168540:intron 20.0%
!!! GTTTCACATTTAATTTCTTA+AGG + chr7_4:61169622-61169641 Msa1168540:intron 20.0%
!!! TATTTGAATTTTCCTACTTT+TGG + chr7_4:61169650-61169669 Msa1168540:intron 20.0%
!! ATATCACATAATTCTAAGTT+TGG + chr7_4:61169722-61169741 Msa1168540:intron 20.0%
!!! AAGACTTTAAAGTCTTATTA+TGG - chr7_4:61169804-61169823 Msa1168510:intron 20.0%
!! TAATGTTAACAGTAAAAGAA+GGG - chr7_4:61170025-61170044 Msa1168510:intron 20.0%
!! TTAATGTTAACAGTAAAAGA+AGG - chr7_4:61170026-61170045 Msa1168510:intron 20.0%
!!! TTTCTCTGTGTATTTTTATT+AGG - chr7_4:61170090-61170109 Msa1168510:intron 20.0%
!! AAAATTTATAGAGAGAAATG+AGG + chr7_4:61170122-61170141 Msa1168540:intron 20.0%
!! CGCAAAGTTAAAAAAAAAAA+TGG + chr7_4:61170364-61170383 Msa1168540:intron 20.0%
!!! CCATTCTATTCATTTTTTTA+AGG - chr7_4:61170505-61170524 Msa1168510:intron 20.0%
!! CCTTAAAAAAATGAATAGAA+TGG + chr7_4:61170502-61170521 Msa1168540:intron 20.0%
!! TAAATAGAAAGAAAAAGGAA+AGG + chr7_4:61170851-61170870 Msa1168540:intron 20.0%
!! ACACAAATTATCTAGTATAA+TGG + chr7_4:61171592-61171611 Msa1168540:intron 20.0%
!!! ATGAAAATGAAGATTTTTGT+TGG - chr7_4:61171667-61171686 Msa1168510:intron 20.0%
!!! GCTTTTTAATTTGACATTAT+TGG - chr7_4:61171694-61171713 Msa1168510:intron 20.0%
!!! AAAGGTATTTTTTTATAGAG+CGG - chr7_4:61171799-61171818 Msa1168510:intron 20.0%
!! TTTCATTACAAAACTTCAAA+GGG - chr7_4:61171847-61171866 Msa1168510:intron 20.0%
!!! TTTTCATTACAAAACTTCAA+AGG - chr7_4:61171848-61171867 Msa1168510:intron 20.0%
!! TTGAAATATTAATAGAGTCA+GGG - chr7_4:61172779-61172798 Msa1168510:intron 20.0%
!!! TTTGAAATATTAATAGAGTC+AGG - chr7_4:61172998-61173017 Msa1168510:intron 20.0%
!!! ATTTTGACAACATTTCAAAA+TGG + chr7_4:61172872-61172891 Msa1168540:intron 20.0%
!! TAAAAAAAACATGGAAACAT+GGG - chr7_4:61172930-61172949 Msa1168510:intron 20.0%
!! ATTATACAATAAAACATGCA+TGG + chr7_4:61173125-61173144 Msa1168540:intron 20.0%
!! AAAAAAATCATTGAAGAACA+TGG - chr7_4:61173497-61173516 Msa1168510:intron 20.0%
!!! CATTTTTATTGAAAGTTAGT+AGG + chr7_4:61173542-61173561 Msa1168540:intron 20.0%
!! AGACTAATAATCTAATAATG+AGG + chr7_4:61173600-61173619 Msa1168540:intron 20.0%
!! GACTAATAATCTAATAATGA+GGG + chr7_4:61173601-61173620 Msa1168540:intron 20.0%
!! ACAAAAAGACAAAAAAATCA+TGG + chr7_4:61173932-61173951 Msa1168540:intron 20.0%
!! TTCTTAAATTGTCCTTTAAT+TGG + chr7_4:61175709-61175728 Msa1168540:intron 20.0%
!! AGTATTAGTAATCCAATTAA+AGG - chr7_4:61175724-61175743 Msa1168510:intron 20.0%
!! CTTGAATTGTTTATCAAAAT+CGG - chr7_4:61176306-61176325 Msa1168510:intron 20.0%
!! ATTTCTATACAATTGACATA+AGG + chr7_4:61176410-61176429 Msa1168540:intron 20.0%
!! AATTGAGTTTATGTAATATC+TGG - chr7_4:61176454-61176473 Msa1168510:intron 20.0%
!! TTTACATGATCTCATAATAT+AGG + chr7_4:61176956-61176975 Msa1168540:intron 20.0%
!!! TGATATTTTTTTTAATGGGT+TGG - chr7_4:61177066-61177085 Msa1168510:intron 20.0%
!!! TTTACTTACATTGCTTTTAT+AGG + chr7_4:61177322-61177341 Msa1168540:intron 20.0%
!! AAGTAAGAAGAATAAGTATT+AGG - chr7_4:61177551-61177570 Msa1168510:intron 20.0%
!! AAGTGTATCAAAAATCATAT+AGG + chr7_4:61179376-61179395 Msa1168540:three_prime_UTR 20.0%
!! ATGCCTTTAACAAATTAATA+TGG + chr7_4:61179405-61179424 Msa1168540:three_prime_UTR 20.0%
! AATGTCTTAAATCAATTGCT+TGG - chr7_4:61168630-61168649 Msa1168510:intron 25.0%
!! AGCAATTGATTTAAGACATT+TGG + chr7_4:61168630-61168649 Msa1168540:CDS 25.0%
!! AATTGATTTAAGACATTTGG+AGG + chr7_4:61168633-61168652 Msa1168540:CDS 25.0%
!!! TCTTTTTCACAAATCTTGAA+GGG - chr7_4:61168741-61168760 Msa1168510:intron 25.0%
!! TCAAAAGATTTCAACTTTTG+AGG + chr7_4:61168913-61168932 Msa1168540:CDS 25.0%
! TCTCTAACAAATTTGTAAAG+TGG - chr7_4:61169043-61169062 Msa1168510:intron 25.0%
!!! ACTTTACAAATTTGTTAGAG+AGG + chr7_4:61169042-61169061 Msa1168540:CDS 25.0%
!!! TTCCAATTTGTTAACTTTGT+TGG + chr7_4:61169203-61169222 Msa1168540:intron 25.0%
! AACCAACAAAGTTAACAAAT+TGG - chr7_4:61169208-61169227 Msa1168510:intron 25.0%
!!! CAACAATTGATTGATTTTAG+TGG - chr7_4:61169495-61169514 Msa1168510:intron 25.0%
! CACTAAAATCAATCAATTGT+TGG + chr7_4:61169493-61169512 Msa1168540:intron 25.0%
! ACATACTTTCATTTGTTTGT+CGG + chr7_4:61169674-61169693 Msa1168540:intron 25.0%
! AAAAAATCTAGAGAAATGTC+TGG - chr7_4:61169947-61169966 Msa1168510:intron 25.0%
!! TGTAAAAATGAAGTTGATTG+AGG + chr7_4:61170169-61170188 Msa1168540:intron 25.0%
! TGATTGAGGTCAATTTATAT+AGG + chr7_4:61170183-61170202 Msa1168540:intron 25.0%
!!! TTTTTTTTTTAACTTTGCGG+CGG - chr7_4:61170363-61170382 Msa1168510:intron 25.0%
! GCTAGTCATTCTATTTATAT+AGG - chr7_4:61170479-61170498 Msa1168510:intron 25.0%
!! TTGCTAAAAGAATTGCTATT+TGG + chr7_4:61170546-61170565 Msa1168540:intron 25.0%
!! ACTTAAATTTTCACTTCTAG+TGG + chr7_4:61170633-61170652 Msa1168540:intron 25.0%
!! AAAAAGAGAGAGTTTTCTTA+AGG + chr7_4:61171095-61171114 Msa1168540:intron 25.0%
!! CATTTGAAATTGATGAAAAG+TGG + chr7_4:61171307-61171326 Msa1168540:intron 25.0%
! TTCCATTCAATAACAAATGT+CGG + chr7_4:61171922-61171941 Msa1168540:intron 25.0%
!!! CTAAAAAAGTGTTTACACAT+AGG - chr7_4:61171999-61172018 Msa1168510:intron 25.0%
! CATTAAATGCAAATCTAAGA+AGG - chr7_4:61172098-61172117 Msa1168510:intron 25.0%
! CTTCTTAGATTTGCATTTAA+TGG + chr7_4:61172096-61172115 Msa1168540:intron 25.0%
! TACCAAGCATAATGTAATAT+TGG + chr7_4:61172319-61172338 Msa1168540:intron 25.0%
!!! ATGACACTTTTGCTTTTTAA+AGG - chr7_4:61172407-61172426 Msa1168510:intron 25.0%
!!! ATATGTTTTGGCATAGATAA+CGG - chr7_4:61172616-61172635 Msa1168510:intron 25.0%
!! TAATTCAGAAACTTTTGACA+AGG - chr7_4:61172905-61172924 Msa1168510:intron 25.0%
! GTAAAAAAAACATGGAAACA+TGG - chr7_4:61172931-61172950 Msa1168510:intron 25.0%
! CAGATAAACTCACATAAATT+CGG + chr7_4:61173251-61173270 Msa1168540:intron 25.0%
! TTTATTTGAGTAAAATGGTG+AGG - chr7_4:61173358-61173377 Msa1168510:intron 25.0%
!!! CTCACTATTTTTGTTTTGAA+GGG - chr7_4:61173640-61173659 Msa1168510:intron 25.0%
!!! TCTCACTATTTTTGTTTTGA+AGG - chr7_4:61173641-61173660 Msa1168510:intron 25.0%
! TTATATCAAACGTTGTGATT+AGG + chr7_4:61173705-61173724 Msa1168540:intron 25.0%
! TATATCAAACGTTGTGATTA+GGG + chr7_4:61173706-61173725 Msa1168540:intron 25.0%
! AATCATCATCATACTATCAT+GGG - chr7_4:61174064-61174083 Msa1168510:intron 25.0%
! ATTGGAAGAAAACAAAAAAG+AGG - chr7_4:61174417-61174436 Msa1168510:intron 25.0%
! GGTGTAGAAAAAAAAAATGT+AGG - chr7_4:61174568-61174587 Msa1168510:intron 25.0%
!! AGTTATTGAGCTTTATATAG+AGG - chr7_4:61174948-61174967 Msa1168510:intron 25.0%
! TTCCATTCTATCAAAATTCT+AGG + chr7_4:61175034-61175053 Msa1168540:intron 25.0%
!!! TACCTAGAATTTTGATAGAA+TGG - chr7_4:61175039-61175058 Msa1168510:intron 25.0%
! AAAATAGAGCAAATTGAGAA+TGG - chr7_4:61175549-61175568 Msa1168510:intron 25.0%
! TACATTCTTATGAAAATCCA+TGG - chr7_4:61175585-61175604 Msa1168510:intron 25.0%
!!! ATTTATTTTATGAACAAGGG+CGG - chr7_4:61176213-61176232 Msa1168510:intron 25.0%
! ATATAGAAATCACAGAAACA+CGG - chr7_4:61176381-61176400 Msa1168510:intron 25.0%
! TTACATAAACTCAATTCACA+TGG + chr7_4:61176458-61176477 Msa1168540:intron 25.0%
! TACATAAACTCAATTCACAT+GGG + chr7_4:61176459-61176478 Msa1168540:intron 25.0%
! ACACAAGTTACATATACAAT+TGG + chr7_4:61176593-61176612 Msa1168540:intron 25.0%
!! AATCCATGCTAAAATTTTGT+AGG + chr7_4:61176662-61176681 Msa1168540:intron 25.0%
!!! TAACCTACAAAATTTTAGCA+TGG - chr7_4:61176668-61176687 Msa1168510:intron 25.0%
! TTCAATTCTTTGTGTGAAAT+TGG - chr7_4:61176712-61176731 Msa1168510:intron 25.0%
! AATTTCACACAAAGAATTGA+AGG + chr7_4:61176711-61176730 Msa1168540:intron 25.0%
! AAACACAAGAATAACCATTA+AGG + chr7_4:61176860-61176879 Msa1168540:intron 25.0%
! AACACAAGAATAACCATTAA+GGG + chr7_4:61176861-61176880 Msa1168540:intron 25.0%
! TTAGACAAAAATACCCTTAA+TGG - chr7_4:61176877-61176896 Msa1168510:intron 25.0%
! AATATCACATAATGCAAATC+AGG + chr7_4:61177079-61177098 Msa1168540:intron 25.0%
! ATATCACATAATGCAAATCA+GGG + chr7_4:61177080-61177099 Msa1168540:intron 25.0%
! AAAATGAACATGGTCAAATA+TGG - chr7_4:61177249-61177268 Msa1168510:intron 25.0%
!! TTTTTGAATGCAGGAATATT+CGG + chr7_4:61177584-61177603 Msa1168540:CDS 25.0%
!! AGGAATTAGATTTGAAATCT+TGG + chr7_4:61177697-61177716 Msa1168540:CDS 25.0%
!!! TGCAAAAGAAGCTTTTAATT+TGG + chr7_4:61177880-61177899 Msa1168540:CDS 25.0%
! TTTGAATTACAACCAAAAGA+AGG + chr7_4:61177923-61177942 Msa1168540:CDS 25.0%
! TTCTTGAAACATCAATCAAA+GGG - chr7_4:61178336-61178355 Msa1168510:three_prime_UTR 25.0%
! TTTCTTGAAACATCAATCAA+AGG - chr7_4:61178337-61178356 Msa1168510:three_prime_UTR 25.0%
!! GTTAATGACTTTTACAACAA+TGG + chr7_4:61178472-61178491 Msa1168540:CDS 25.0%
! AATGTCTTAAATCAATTGCT+TGG - chr7_4:61168630-61168649 Msa1168510:intron 25.0%
!! AGCAATTGATTTAAGACATT+TGG + chr7_4:61168630-61168649 Msa1168540:CDS 25.0%
!! AATTGATTTAAGACATTTGG+AGG + chr7_4:61168633-61168652 Msa1168540:CDS 25.0%
!! TTCCTATTTGTTAACTTTGT+TGG + chr7_4:61179319-61179338 Msa1168540:exon 25.0%
! AACCAACAAAGTTAACAAAT+AGG - chr7_4:61169208-61169227 Msa1168510:intron 25.0%
! TGCACAATGTACTAAAAATT+CGG - chr7_4:61179530-61179549 Msa1168510:three_prime_UTR 25.0%
!! GTCTTTTTCACAAATCTTGA+AGG - chr7_4:61168742-61168761 Msa1168510:intron 30.0%
!! TGAAAAAGACTTGTTGAAAG+TGG + chr7_4:61168752-61168771 Msa1168540:intron 30.0%
! TGATCTTGTTTGGAATTGTT+GGG - chr7_4:61169003-61169022 Msa1168510:intron 30.0%
! TTGATCTTGTTTGGAATTGT+TGG - chr7_4:61169004-61169023 Msa1168510:intron 30.0%
ACAATTCCAAACAAGATCAA+TGG + chr7_4:61169004-61169023 Msa1168540:intron 30.0%
CAAAGTTAACAAATTGGAAG+AGG - chr7_4:61169202-61169221 Msa1168510:intron 30.0%
AACCTCTAATTACTTGCTTA+TGG + chr7_4:61169454-61169473 Msa1168540:intron 30.0%
ACCTCTAATTACTTGCTTAT+GGG + chr7_4:61169455-61169474 Msa1168540:intron 30.0%
!! TCAATCAATTGTTGGTTCTA+AGG + chr7_4:61169501-61169520 Msa1168540:intron 30.0%
!! CAATCAATTGTTGGTTCTAA+GGG + chr7_4:61169502-61169521 Msa1168540:intron 30.0%
! TGAAAGTATGTTCCAAAAGT+AGG - chr7_4:61169665-61169684 Msa1168510:intron 30.0%
!! AAGACTTTAAAGTCTTCATC+AGG + chr7_4:61169808-61169827 Msa1168540:intron 30.0%
AACAATGCAGATGACATAAA+AGG - chr7_4:61169860-61169879 Msa1168510:intron 30.0%
ACACTAGAGGATAGAAAATA+GGG - chr7_4:61170049-61170068 Msa1168510:intron 30.0%
! ATTTTTCTGCCTTACAATTG+CGG + chr7_4:61170327-61170346 Msa1168540:intron 30.0%
! AATGAATAGAATGGTTAGCT+AGG + chr7_4:61170511-61170530 Msa1168540:intron 30.0%
TAAGTTTGACCATCCAATAT+AGG - chr7_4:61170618-61170637 Msa1168510:intron 30.0%
! CACTTTGTTTATTTGTTCGT+TGG + chr7_4:61170705-61170724 Msa1168540:intron 30.0%
! TTAGCCATGATAATGTTCTA+TGG - chr7_4:61170742-61170761 Msa1168510:intron 30.0%
GCATATCTTAGTAGATTCAA+CGG + chr7_4:61170906-61170925 Msa1168540:intron 30.0%
AGACATTTCTCAAATTCAAG+TGG - chr7_4:61170993-61171012 Msa1168510:intron 30.0%
!! CTTTCTGACTTTGTTTCTTT+TGG + chr7_4:61171050-61171069 Msa1168540:intron 30.0%
TTCTTAAGGAAATGTTGTTC+AGG + chr7_4:61171109-61171128 Msa1168540:intron 30.0%
TGGCTATACTTATGGAAAAA+TGG + chr7_4:61171140-61171159 Msa1168540:intron 30.0%
! CAATCTAGTCTTTGAATTGT+TGG + chr7_4:61171175-61171194 Msa1168540:intron 30.0%
AGTCGTTTATAACAGGTTAA+TGG - chr7_4:61171638-61171657 Msa1168510:intron 30.0%
GATAAGAAGTCGTTTATAAC+AGG - chr7_4:61171645-61171664 Msa1168510:intron 30.0%
TGTGTTTGACTAATAGTTTG+GGG - chr7_4:61171734-61171753 Msa1168510:intron 30.0%
CTGTGTTTGACTAATAGTTT+GGG - chr7_4:61171735-61171754 Msa1168510:intron 30.0%
ACTGTGTTTGACTAATAGTT+TGG - chr7_4:61171736-61171755 Msa1168510:intron 30.0%
GTATGAATTCTCAGAAAACT+AGG - chr7_4:61171774-61171793 Msa1168510:intron 30.0%
TCCATTCAATAACAAATGTC+GGG + chr7_4:61171923-61171942 Msa1168540:intron 30.0%
! AAAGTGTTTACACATAGGAA+CGG - chr7_4:61171994-61172013 Msa1168510:intron 30.0%
!!! CACTTTTTTAGTAGAGAGAA+AGG + chr7_4:61172008-61172027 Msa1168540:intron 30.0%
!! TTTTTAGTAGAGAGAAAGGA+TGG + chr7_4:61172012-61172031 Msa1168540:intron 30.0%
TGTTGCATGTAATTTACTTG+TGG + chr7_4:61172152-61172171 Msa1168540:intron 30.0%
GTTGCATGTAATTTACTTGT+GGG + chr7_4:61172153-61172172 Msa1168540:intron 30.0%
AGCCAATATTACATTATGCT+TGG - chr7_4:61172324-61172343 Msa1168510:intron 30.0%
ATGAAAGTAGTAGTAATCAG+AGG + chr7_4:61172352-61172371 Msa1168540:intron 30.0%
TGAAAGTAGTAGTAATCAGA+GGG + chr7_4:61172353-61172372 Msa1168540:intron 30.0%
ATCACTCATCGTAAAATAGA+TGG + chr7_4:61172456-61172475 Msa1168540:intron 30.0%
AAAAGAGTAAACCACTATTC+TGG + chr7_4:61172730-61172749 Msa1168540:intron 30.0%
GACTAATTTGAGAATCACTT+GGG - chr7_4:61172757-61172776 Msa1168510:intron 30.0%
!!! TTTTTTTCTTCACATGACGA+GGG - chr7_4:61172840-61172859 Msa1168510:intron 30.0%
!!! TTTTTTTTCTTCACATGACG+AGG - chr7_4:61172841-61172860 Msa1168510:intron 30.0%
CTCGTCATGTAAAAAAAACA+TGG - chr7_4:61172939-61172958 Msa1168510:intron 30.0%
TGAAATATTAATAGAGTCGG+AGG + chr7_4:61173000-61173019 Msa1168540:intron 30.0%
CACATAAATTCGGATAGATT+TGG + chr7_4:61173261-61173280 Msa1168540:intron 30.0%
CAAAAATAGTGAGAGTTATC+TGG + chr7_4:61173647-61173666 Msa1168540:intron 30.0%
TCAAATAAGCCTCATTATAG+TGG + chr7_4:61173842-61173861 Msa1168540:intron 30.0%
CAAATAAGCCTCATTATAGT+GGG + chr7_4:61173843-61173862 Msa1168540:intron 30.0%
TTTGTACATTTGTGACATTG+TGG + chr7_4:61173991-61174010 Msa1168540:intron 30.0%
CAATCATCATCATACTATCA+TGG - chr7_4:61174065-61174084 Msa1168510:intron 30.0%
ATGATGTTATGGATTTGTAG+AGG + chr7_4:61174280-61174299 Msa1168540:intron 30.0%
TGATGTTATGGATTTGTAGA+GGG + chr7_4:61174281-61174300 Msa1168540:intron 30.0%
GAAAACAAAAAAGAGGTAGT+TGG - chr7_4:61174410-61174429 Msa1168510:intron 30.0%
! TTTTGGTATTCTTTGATGCT+TGG - chr7_4:61174462-61174481 Msa1168510:intron 30.0%
TGAAAATTAATCATGAGCGT+TGG - chr7_4:61174540-61174559 Msa1168510:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr7_4:61174721-61174740 Msa1168510:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr7_4:61174722-61174741 Msa1168510:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr7_4:61174721-61174740 Msa1168510:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr7_4:61174722-61174741 Msa1168510:intron 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr7_4:61174867-61174886 Msa1168540:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr7_4:61174868-61174887 Msa1168540:intron 30.0%
! TGAGCTTTATATAGAGGTTT+GGG - chr7_4:61174942-61174961 Msa1168510:intron 30.0%
! TTGAGCTTTATATAGAGGTT+TGG - chr7_4:61174943-61174962 Msa1168510:intron 30.0%
ATGTTCCTTAATATGTTGTG+TGG - chr7_4:61175065-61175084 Msa1168510:intron 30.0%
AATCAAGCAGAATGATTCAT+TGG - chr7_4:61175144-61175163 Msa1168510:intron 30.0%
!!! GGTGTAACTAGATTTTTTTG+GGG - chr7_4:61176152-61176171 Msa1168510:intron 30.0%
!!! GGGTGTAACTAGATTTTTTT+GGG - chr7_4:61176153-61176172 Msa1168510:intron 30.0%
!!! TGGGTGTAACTAGATTTTTT+TGG - chr7_4:61176154-61176173 Msa1168510:intron 30.0%
!!! TTTATTTTATGAACAAGGGC+GGG - chr7_4:61176212-61176231 Msa1168510:intron 30.0%
TTCCTAAATACAAGTGAACT+GGG - chr7_4:61176494-61176513 Msa1168510:intron 30.0%
ATTCCTAAATACAAGTGAAC+TGG - chr7_4:61176495-61176514 Msa1168510:intron 30.0%
AGAACATGACTGAATTGAAT+TGG + chr7_4:61176552-61176571 Msa1168540:intron 30.0%
!!! AAGGGTATTTTTGTCTAAAG+TGG + chr7_4:61176879-61176898 Msa1168540:intron 30.0%
!! AGGGTATTTTTGTCTAAAGT+GGG + chr7_4:61176880-61176899 Msa1168540:intron 30.0%
TGATCTCATAATATAGGTGT+TGG + chr7_4:61176962-61176981 Msa1168540:intron 30.0%
TCCATATTTGATGTTGTGTA+AGG + chr7_4:61177130-61177149 Msa1168540:intron 30.0%
TCCTTACACAACATCAAATA+TGG - chr7_4:61177134-61177153 Msa1168510:intron 30.0%
AACATGATCGAAAATGAACA+TGG - chr7_4:61177259-61177278 Msa1168510:intron 30.0%
AAACGGTTTAACTAGTAAAC+TGG - chr7_4:61177282-61177301 Msa1168510:intron 30.0%
ATCTAATTCCTGAATAACCT+TGG - chr7_4:61177688-61177707 Msa1168510:three_prime_UTR 30.0%
!!! AAAGAAGCTTTTAATTTGGC+TGG + chr7_4:61177884-61177903 Msa1168540:CDS 30.0%
! ATTTTTGCTGAAGTTATGCA+AGG + chr7_4:61178046-61178065 Msa1168540:CDS 30.0%
! TTTTTGCTGAAGTTATGCAA+GGG + chr7_4:61178047-61178066 Msa1168540:CDS 30.0%
! TGCTATTATGGAACACATTT+TGG + chr7_4:61178135-61178154 Msa1168540:CDS 30.0%
! ATTATGGAACACATTTTGGA+CGG + chr7_4:61178139-61178158 Msa1168540:CDS 30.0%
!! AGTGCATATCTATCTTGTTT+TGG - chr7_4:61178220-61178239 Msa1168510:three_prime_UTR 30.0%
AATCTAATCACTTCAACCAA+AGG - chr7_4:61178268-61178287 Msa1168510:three_prime_UTR 30.0%
ATATTGCAACTCAGAACAAT+AGG - chr7_4:61178575-61178594 Msa1168510:three_prime_UTR 30.0%
!! CTTTTTCACAGAATCTTGAA+GGG - chr7_4:61178855-61178874 Msa1168510:three_prime_UTR 30.0%
!! TCTTTTTCACAGAATCTTGA+AGG - chr7_4:61178856-61178875 Msa1168510:three_prime_UTR 30.0%
!! TGAAAAAGACTTGTTGAAAG+TGG + chr7_4:61168752-61168771 Msa1168540:intron 30.0%
!!! TCAAAAGATTGCTACTTTTG+AGG + chr7_4:61179029-61179048 Msa1168540:CDS 30.0%
CAAAGTTAACAAATAGGAAG+AGG - chr7_4:61179318-61179337 Msa1168510:three_prime_UTR 30.0%
!! CTTTTTGGCAACTTGACTTA+CGG - chr7_4:61168686-61168705 Msa1168510:intron 35.0%
GTAGATCATGCACTAGTTAA+TGG + chr7_4:61168857-61168876 Msa1168540:CDS 35.0%
! GATCTTGTTTGGAATTGTTG+GGG - chr7_4:61169002-61169021 Msa1168510:intron 35.0%
!! AAATTTGTTAGAGAGGAGCT+GGG + chr7_4:61169049-61169068 Msa1168540:CDS 35.0%
! CTATTTTCAGCTATGTGTCA+TGG + chr7_4:61169127-61169146 Msa1168540:CDS 35.0%
TGATCCTCTTCTTGAATGTT+TGG + chr7_4:61169159-61169178 Msa1168540:CDS 35.0%
GATCCTCTTCTTGAATGTTT+GGG + chr7_4:61169160-61169179 Msa1168540:CDS 35.0%
TATTGCTAATGTGTGTCCTA+AGG + chr7_4:61169364-61169383 Msa1168540:intron 35.0%
CCTCTAATTACTTGCTTATG+GGG + chr7_4:61169456-61169475 Msa1168540:intron 35.0%
TATGTGATATAGTTGCCCAA+TGG - chr7_4:61169712-61169731 Msa1168510:intron 35.0%
AAACATCAATGCTAGCACAA+GGG - chr7_4:61169773-61169792 Msa1168510:intron 35.0%
GGGATAAGAAAAAGAAGAGA+TGG - chr7_4:61170005-61170024 Msa1168510:intron 35.0%
CACACTAGAGGATAGAAAAT+AGG - chr7_4:61170050-61170069 Msa1168510:intron 35.0%
! ATTTTCTATCCTCTAGTGTG+AGG + chr7_4:61170050-61170069 Msa1168540:intron 35.0%
AAAAAGTTGCCGCAATTGTA+AGG - chr7_4:61170339-61170358 Msa1168510:intron 35.0%
GAAATGTTGTTCAGGCAAAA+TGG + chr7_4:61171117-61171136 Msa1168540:intron 35.0%
CAAAATGGTGGCTATACTTA+TGG + chr7_4:61171132-61171151 Msa1168540:intron 35.0%
CTAACTAACTAATGCTCTCA+AGG + chr7_4:61171252-61171271 Msa1168540:intron 35.0%
TAGGTCATGCTAACTAGTTA+AGG - chr7_4:61171394-61171413 Msa1168510:intron 35.0%
ATATACCATGGACAATATGG+TGG - chr7_4:61171554-61171573 Msa1168510:intron 35.0%
CTCATATACCATGGACAATA+TGG - chr7_4:61171557-61171576 Msa1168510:intron 35.0%
CAAGTTCATCTCATATACCA+TGG - chr7_4:61171566-61171585 Msa1168510:intron 35.0%
GAATTCTCAGAAAACTAGGT+GGG - chr7_4:61171770-61171789 Msa1168510:intron 35.0%
TGAATTCTCAGAAAACTAGG+TGG - chr7_4:61171771-61171790 Msa1168510:intron 35.0%
GAGTAAGATGAAGCTTACAA+AGG - chr7_4:61171817-61171836 Msa1168510:intron 35.0%
CCATTCAATAACAAATGTCG+GGG + chr7_4:61171924-61171943 Msa1168540:intron 35.0%
TTTATTAGTGTGGTGTGGAA+GGG - chr7_4:61171963-61171982 Msa1168510:intron 35.0%
ATTTATTAGTGTGGTGTGGA+AGG - chr7_4:61171964-61171983 Msa1168510:intron 35.0%
GAGTATTTATTAGTGTGGTG+TGG - chr7_4:61171968-61171987 Msa1168510:intron 35.0%
GAGAAAGGATGGTTACATAT+CGG + chr7_4:61172023-61172042 Msa1168540:intron 35.0%
AGAAAGGATGGTTACATATC+GGG + chr7_4:61172024-61172043 Msa1168540:intron 35.0%
!! TTTGATGCGTCTTGTTGTTA+CGG - chr7_4:61172127-61172146 Msa1168510:intron 35.0%
GGACTAATTTGAGAATCACT+TGG - chr7_4:61172758-61172777 Msa1168510:intron 35.0%
TGAGAATCACTTACAAAGAC+AGG + chr7_4:61173029-61173048 Msa1168540:intron 35.0%
GAGAATCACTTACAAAGACA+GGG + chr7_4:61173030-61173049 Msa1168540:intron 35.0%
GAACGAGTAAACCATCAATT+TGG - chr7_4:61173057-61173076 Msa1168510:intron 35.0%
ATTTGAGTAAAATGGTGAGG+TGG - chr7_4:61173355-61173374 Msa1168510:intron 35.0%
AAACTGACTAGCGTTATCAA+TGG - chr7_4:61173577-61173596 Msa1168510:intron 35.0%
CAATTGTCACATACAAGTTG+AGG - chr7_4:61173752-61173771 Msa1168510:intron 35.0%
TTTGTACACTTGCGACATTA+TGG - chr7_4:61173917-61173936 Msa1168510:intron 35.0%
TTTGTTCTCTCTCACTTACA+AGG + chr7_4:61173956-61173975 Msa1168540:intron 35.0%
TACATTTGTGACATTGTGGT+TGG + chr7_4:61173995-61174014 Msa1168540:intron 35.0%
! AAAACACTTTGGTGACATTG+GGG - chr7_4:61174041-61174060 Msa1168510:intron 35.0%
! GAAAACACTTTGGTGACATT+GGG - chr7_4:61174042-61174061 Msa1168510:intron 35.0%
ACTATCATGGGAAAACACTT+TGG - chr7_4:61174052-61174071 Msa1168510:intron 35.0%
TTAGAGTTGAATGAGAGTCA+TGG + chr7_4:61174315-61174334 Msa1168540:intron 35.0%
!! ATCGCTTACTTACTTTTGAC+CGG - chr7_4:61174514-61174533 Msa1168510:intron 35.0%
TCATTCATTGCATGTGTGTT+TGG - chr7_4:61174621-61174640 Msa1168510:intron 35.0%
CTCCAAAACAAACCTCTATA+GGG + chr7_4:61174648-61174667 Msa1168540:intron 35.0%
TCCAAAACAAACCTCTATAG+GGG + chr7_4:61174649-61174668 Msa1168540:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr7_4:61174779-61174798 Msa1168510:intron 35.0%
ACTAACAGAGTCTACATTCA+GGG - chr7_4:61174811-61174830 Msa1168510:intron 35.0%
! GAGCTTTATATAGAGGTTTG+GGG - chr7_4:61174941-61174960 Msa1168510:intron 35.0%
TACCACCACACAACATATTA+AGG + chr7_4:61175057-61175076 Msa1168540:intron 35.0%
TTCCTTAATATGTTGTGTGG+TGG - chr7_4:61175062-61175081 Msa1168510:intron 35.0%
ATGAAGCTGATCCTTTGAAT+TGG + chr7_4:61175195-61175214 Msa1168540:CDS 35.0%
TGAAGCTGATCCTTTGAATT+GGG + chr7_4:61175196-61175215 Msa1168540:CDS 35.0%
AAAAACGGAAGTAAAGTGAG+TGG - chr7_4:61175872-61175891 Msa1168510:intron 35.0%
!! TTTTGATGGATGTTTGTGAG+AGG - chr7_4:61176279-61176298 Msa1168510:intron 35.0%
!!! TCAAAATCGGTCACTTTTGA+TGG - chr7_4:61176293-61176312 Msa1168510:intron 35.0%
AACCCAGTTCACTTGTATTT+AGG + chr7_4:61176489-61176508 Msa1168540:intron 35.0%
TTGAATTGGCAACAAACTCT+AGG + chr7_4:61176566-61176585 Msa1168540:intron 35.0%
!!! ATTGGCCTTCTTCATTTTGA+TGG + chr7_4:61176611-61176630 Msa1168540:intron 35.0%
GGTGTACCTGAAAGTTTATA+GGG + chr7_4:61176901-61176920 Msa1168540:intron 35.0%
GTTACACCCTATAAACTTTC+AGG - chr7_4:61176910-61176929 Msa1168510:intron 35.0%
TGATGTTGTGTAAGGAAGAT+AGG + chr7_4:61177138-61177157 Msa1168540:intron 35.0%
CAAATCCTTCTTCTTCTTGT+CGG + chr7_4:61177485-61177504 Msa1168540:intron 35.0%
!!! CTTCTTACTTCTTGTTTTCC+AGG + chr7_4:61177561-61177580 Msa1168540:intron 35.0%
! TTTTCCAGGTTTTTGAATGC+AGG + chr7_4:61177575-61177594 Msa1168540:intron 35.0%
TATTCCTGCATTCAAAAACC+TGG - chr7_4:61177582-61177601 Msa1168510:three_prime_UTR 35.0%
AATGCAGGAATATTCGGAAA+TGG + chr7_4:61177590-61177609 Msa1168540:CDS 35.0%
TAATTCCTGAATAACCTTGG+AGG - chr7_4:61177685-61177704 Msa1168510:three_prime_UTR 35.0%
TTTGTTAAGGAGCTTAGTGA+TGG - chr7_4:61177726-61177745 Msa1168510:three_prime_UTR 35.0%
AAACCAGCAATGTATGAAAG+AGG - chr7_4:61177806-61177825 Msa1168510:three_prime_UTR 35.0%
!! AGCTTTTGAATTTGGTCTTC+CGG - chr7_4:61177834-61177853 Msa1168510:three_prime_UTR 35.0%
AGACCAAATTCAAAAGCTCA+TGG + chr7_4:61177836-61177855 Msa1168540:CDS 35.0%
GAGAACAATAGAAGCTAAAC+CGG - chr7_4:61177981-61178000 Msa1168510:three_prime_UTR 35.0%
AGCTTCTATTGTTCTCTTTG+AGG + chr7_4:61177985-61178004 Msa1168540:CDS 35.0%
!!! TCTCTTTGAGGCTAACATTT+TGG + chr7_4:61177997-61178016 Msa1168540:CDS 35.0%
GTCAAATGATCGGTAAATTC+AGG - chr7_4:61178076-61178095 Msa1168510:three_prime_UTR 35.0%
CAACTTGTGTGTCAAATGAT+CGG - chr7_4:61178086-61178105 Msa1168510:three_prime_UTR 35.0%
TCAAGAAACAAAGCTTTGCA+TGG + chr7_4:61178349-61178368 Msa1168540:CDS 35.0%
AACTTTCAAGGAACACCTAT+TGG + chr7_4:61178376-61178395 Msa1168540:CDS 35.0%
TTATCCATGGATACTCCAAT+AGG - chr7_4:61178394-61178413 Msa1168510:three_prime_UTR 35.0%
ATCCATGGATAATACACGTT+TGG + chr7_4:61178402-61178421 Msa1168540:CDS 35.0%
CTACTAGCAGAAAGATTTGA+AGG - chr7_4:61178502-61178521 Msa1168510:three_prime_UTR 35.0%
AGAAATCCTAGCTTGGATTA+TGG + chr7_4:61178520-61178539 Msa1168540:CDS 35.0%
TTGAAACCATAATCCAAGCT+AGG - chr7_4:61178529-61178548 Msa1168510:three_prime_UTR 35.0%
TAGCTTGGATTATGGTTTCA+AGG + chr7_4:61178528-61178547 Msa1168540:CDS 35.0%
AGCTTGGATTATGGTTTCAA+GGG + chr7_4:61178529-61178548 Msa1168540:CDS 35.0%
AACCAAGATGTGAACTCTTT+GGG + chr7_4:61178640-61178659 Msa1168540:CDS 35.0%
!! CTTTTTGGCAACTTGACTTA+CGG - chr7_4:61168686-61168705 Msa1168510:intron 35.0%
!! TGCCTTAGTTTTTGACTCAA+CGG - chr7_4:61178946-61178965 Msa1168510:three_prime_UTR 35.0%
TCAAAAACTAAGGCAAGTGT+TGG + chr7_4:61178951-61178970 Msa1168540:CDS 35.0%
GTAGATCATGCACTAGTTAA+TGG + chr7_4:61168857-61168876 Msa1168540:CDS 35.0%
! TGATCTTGTTTGGGATTGTT+GGG - chr7_4:61179119-61179138 Msa1168510:three_prime_UTR 35.0%
! TTGATCTTGTTTGGGATTGT+TGG - chr7_4:61179120-61179139 Msa1168510:three_prime_UTR 35.0%
ACAATCCCAAACAAGATCAA+TGG + chr7_4:61179120-61179139 Msa1168540:CDS 35.0%
! TGCATCCATTGATCTTGTTT+GGG - chr7_4:61169012-61169031 Msa1168510:intron 35.0%
TCTCTCACAAACTTGTAAAG+TGG - chr7_4:61179159-61179178 Msa1168510:three_prime_UTR 35.0%
ACTTTACAAGTTTGTGAGAG+AGG + chr7_4:61179158-61179177 Msa1168540:CDS 35.0%
! ACTATTTTCAGCTATGTGTC+AGG + chr7_4:61169126-61169145 Msa1168540:CDS 35.0%
! CTATTTTCAGCTATGTGTCA+GGG + chr7_4:61169127-61169146 Msa1168540:CDS 35.0%
GATCCTCTTCTTGAATGTTT+GGG + chr7_4:61169160-61169179 Msa1168540:CDS 35.0%
TTGGCAAAGTGCAATCAAGA+AGG - chr7_4:61168611-61168630 Msa1168510:intron 40.0%
TGCCAAAAAGACTCTTACCA+TGG + chr7_4:61168696-61168715 Msa1168540:CDS 40.0%
GCCAAAAAGACTCTTACCAT+GGG + chr7_4:61168697-61168716 Msa1168540:CDS 40.0%
! ACCCATGGTAAGAGTCTTTT+TGG - chr7_4:61168701-61168720 Msa1168510:intron 40.0%
! ACTTGTTGAAAGTGGTTGAC+AGG + chr7_4:61168760-61168779 Msa1168540:intron 40.0%
CTTGTTGAAAGTGGTTGACA+GGG + chr7_4:61168761-61168780 Msa1168540:intron 40.0%
TACCCTTTGAGTCAAAACTC+AGG + chr7_4:61168825-61168844 Msa1168540:CDS 40.0%
!!! TGCCTGAGTTTTGACTCAAA+GGG - chr7_4:61168830-61168849 Msa1168510:intron 40.0%
!!! TTGCCTGAGTTTTGACTCAA+AGG - chr7_4:61168831-61168850 Msa1168510:intron 40.0%
! TTCAACCTCTTTTGGCAAGA+GGG - chr7_4:61168951-61168970 Msa1168510:intron 40.0%
! TTTCAACCTCTTTTGGCAAG+AGG - chr7_4:61168952-61168971 Msa1168510:intron 40.0%
! CTTGCACTTTCAACCTCTTT+TGG - chr7_4:61168959-61168978 Msa1168510:intron 40.0%
! CAAAAGAGGTTGAAAGTGCA+AGG + chr7_4:61168957-61168976 Msa1168540:CDS 40.0%
CTGCATCCATTGATCTTGTT+TGG - chr7_4:61169013-61169032 Msa1168510:intron 40.0%
CAAACAAGATCAATGGATGC+AGG + chr7_4:61169011-61169030 Msa1168540:intron 40.0%
!! CAAATTTGTTAGAGAGGAGC+TGG + chr7_4:61169048-61169067 Msa1168540:CDS 40.0%
! CGGTGAAATGACATTTTCTC+CGG - chr7_4:61169089-61169108 Msa1168510:intron 40.0%
! CGGAGAAAATGTCATTTCAC+CGG + chr7_4:61169087-61169106 Msa1168540:CDS 40.0%
! GGAGAAAATGTCATTTCACC+GGG + chr7_4:61169088-61169107 Msa1168540:CDS 40.0%
TCTCCCAAACATTCAAGAAG+AGG - chr7_4:61169166-61169185 Msa1168510:intron 40.0%
TTCTTGAATGTTTGGGAGAG+TGG + chr7_4:61169167-61169186 Msa1168540:CDS 40.0%
CCCCATAAGCAAGTAATTAG+AGG - chr7_4:61169459-61169478 Msa1168510:intron 40.0%
!! TTGTTGGTTCTAAGGGTACT+TGG + chr7_4:61169509-61169528 Msa1168540:intron 40.0%
GAAACATCAATGCTAGCACA+AGG - chr7_4:61169774-61169793 Msa1168510:intron 40.0%
TGAGAAAGAGATCTGGATGA+GGG - chr7_4:61169894-61169913 Msa1168510:intron 40.0%
AAAGAGAGAGCAAACTTGAG+AGG - chr7_4:61169924-61169943 Msa1168510:intron 40.0%
ACTCTTTATCCTCACACTAG+AGG - chr7_4:61170062-61170081 Msa1168510:intron 40.0%
TGAACATTGCGCATTTGCAA+CGG + chr7_4:61170216-61170235 Msa1168540:intron 40.0%
AACACGTGCTTAGCCTATAT+TGG + chr7_4:61170602-61170621 Msa1168540:intron 40.0%
CACTTCTAGTGGAATTCATG+AGG + chr7_4:61170644-61170663 Msa1168540:intron 40.0%
TTCTAGTGGAATTCATGAGG+AGG + chr7_4:61170647-61170666 Msa1168540:intron 40.0%
CGCACCATAGAACATTATCA+TGG + chr7_4:61170735-61170754 Msa1168540:intron 40.0%
CTTAGTAGATTCAACGGTTG+AGG + chr7_4:61170912-61170931 Msa1168540:intron 40.0%
ATGTTGTTCAGGCAAAATGG+TGG + chr7_4:61171120-61171139 Msa1168540:intron 40.0%
GTCATGCTAACTAGTTAAGG+AGG - chr7_4:61171391-61171410 Msa1168510:intron 40.0%
!! CCCCGACATTTGTTATTGAA+TGG - chr7_4:61171927-61171946 Msa1168510:intron 40.0%
TTATTAGTGTGGTGTGGAAG+GGG - chr7_4:61171962-61171981 Msa1168510:intron 40.0%
!! GGAGGGAGTATTTATTAGTG+TGG - chr7_4:61171973-61171992 Msa1168510:intron 40.0%
TGTTTACACATAGGAACGGA+GGG - chr7_4:61171990-61172009 Msa1168510:intron 40.0%
TGTATAGTCTTTAGTCCCAC+AGG + chr7_4:61172181-61172200 Msa1168540:intron 40.0%
CAAATAGATCACTCGTTACG+AGG - chr7_4:61172207-61172226 Msa1168510:intron 40.0%
!! CAGAGAGTGATTGTTTTGTC+TGG - chr7_4:61172525-61172544 Msa1168510:intron 40.0%
AAAGACAGGGACCAAATTGA+TGG + chr7_4:61173043-61173062 Msa1168540:intron 40.0%
CGCACTCAAACTCGTATTTA+TGG + chr7_4:61173211-61173230 Msa1168540:intron 40.0%
!!! GTGAGGTGGAAGATGTTTTT+TGG - chr7_4:61173341-61173360 Msa1168510:intron 40.0%
GACGATAAGAAATGTGTGGT+GGG - chr7_4:61173475-61173494 Msa1168510:intron 40.0%
CATGGACGATAAGAAATGTG+TGG - chr7_4:61173479-61173498 Msa1168510:intron 40.0%
! TTGTCACATACAAGTTGAGG+AGG - chr7_4:61173749-61173768 Msa1168510:intron 40.0%
AAGTGCTACCCACTATAATG+AGG - chr7_4:61173854-61173873 Msa1168510:intron 40.0%
!! TCATTATAGTGGGTAGCACT+TGG + chr7_4:61173853-61173872 Msa1168540:intron 40.0%
!! CATTATAGTGGGTAGCACTT+GGG + chr7_4:61173854-61173873 Msa1168540:intron 40.0%
TACACTTGCGACATTATGGT+TGG - chr7_4:61173913-61173932 Msa1168510:intron 40.0%
GTTGGTCAATCACATGACAT+TGG + chr7_4:61174013-61174032 Msa1168540:intron 40.0%
! GGAAAACACTTTGGTGACAT+TGG - chr7_4:61174043-61174062 Msa1168510:intron 40.0%
!! GTAGTTGGTGAGAAACATAG+TGG - chr7_4:61174395-61174414 Msa1168510:intron 40.0%
TAGATTGGTGTGAGTGGAAT+TGG - chr7_4:61174435-61174454 Msa1168510:intron 40.0%
!! TTGATGCTTGGTTGGTAGAT+TGG - chr7_4:61174450-61174469 Msa1168510:intron 40.0%
GGTATTCTTTGATGCTTGGT+TGG - chr7_4:61174458-61174477 Msa1168510:intron 40.0%
CCACGTTGCAATATCATAAC+CGG + chr7_4:61174492-61174511 Msa1168540:intron 40.0%
TCATTGCATGTGTGTTTGGT+AGG - chr7_4:61174617-61174636 Msa1168510:intron 40.0%
!!! CCTATAGAGGTTTGTTTTGG+AGG - chr7_4:61174650-61174669 Msa1168510:intron 40.0%
CCTCCAAAACAAACCTCTAT+AGG + chr7_4:61174647-61174666 Msa1168540:intron 40.0%
!! TCCCCTATAGAGGTTTGTTT+TGG - chr7_4:61174653-61174672 Msa1168510:intron 40.0%
AAGTGACTAATCCCCTATAG+AGG - chr7_4:61174663-61174682 Msa1168510:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr7_4:61174675-61174694 Msa1168540:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr7_4:61174780-61174799 Msa1168510:intron 40.0%
GACTAACAGAGTCTACATTC+AGG - chr7_4:61174812-61174831 Msa1168510:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr7_4:61174675-61174694 Msa1168510:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr7_4:61174674-61174693 Msa1168510:intron 40.0%
TAACTCTTCCTTCACATCTC+AGG + chr7_4:61174963-61174982 Msa1168540:intron 40.0%
GTGAATTTCCTGAGATGTGA+AGG - chr7_4:61174974-61174993 Msa1168510:intron 40.0%
GAAGCTGATCCTTTGAATTG+GGG + chr7_4:61175197-61175216 Msa1168540:CDS 40.0%
! GTGATGGAGAGTATGAACAA+AGG + chr7_4:61175419-61175438 Msa1168540:CDS 40.0%
CTTTGCAGAAAGAACTCATC+AGG + chr7_4:61175510-61175529 Msa1168540:CDS 40.0%
! CGTCTATTTTCGTAAGTACG+TGG + chr7_4:61176797-61176816 Msa1168540:intron 40.0%
!!! TGTTTTGATTTCCGTCCAAG+TGG - chr7_4:61176845-61176864 Msa1168510:intron 40.0%
GGGTGTACCTGAAAGTTTAT+AGG + chr7_4:61176900-61176919 Msa1168540:intron 40.0%
TGTAAGGAAGATAGGACAAG+TGG + chr7_4:61177146-61177165 Msa1168540:intron 40.0%
GTAAGGAAGATAGGACAAGT+GGG + chr7_4:61177147-61177166 Msa1168540:intron 40.0%
CCAATCGTTGAAGTCAAACA+TGG - chr7_4:61177211-61177230 Msa1168510:intron 40.0%
! CCATGTTTGACTTCAACGAT+TGG + chr7_4:61177208-61177227 Msa1168540:intron 40.0%
!! TCTTGTCGGTGTCTGTTTTA+TGG + chr7_4:61177499-61177518 Msa1168540:intron 40.0%
AAATCACACACTACCACACA+CGG + chr7_4:61177622-61177641 Msa1168540:CDS 40.0%
!! TGTGTTGATTCTCACTAGCA+TGG - chr7_4:61177660-61177679 Msa1168510:three_prime_UTR 40.0%
!!! ATGGAGTGACGGTTTTGTTA+AGG - chr7_4:61177739-61177758 Msa1168510:three_prime_UTR 40.0%
GTTCCTCTTTCATACATTGC+TGG + chr7_4:61177800-61177819 Msa1168540:CDS 40.0%
!! TACATTGCTGGTTTACTCAC+CGG + chr7_4:61177812-61177831 Msa1168540:CDS 40.0%
! GGTCCATGAGCTTTTGAATT+TGG - chr7_4:61177842-61177861 Msa1168510:three_prime_UTR 40.0%
GCATTAAGTACTTCTCCAGA+TGG - chr7_4:61177863-61177882 Msa1168510:three_prime_UTR 40.0%
AACAGCTGTTCCGTTAACAA+GGG - chr7_4:61177954-61177973 Msa1168510:three_prime_UTR 40.0%
AATTGAGGCTGCTGCTATTA+TGG + chr7_4:61178123-61178142 Msa1168540:CDS 40.0%
!!! TCTTGTTTTGGCTTCTGCAA+AGG - chr7_4:61178208-61178227 Msa1168510:three_prime_UTR 40.0%
CACTTAGAACTTCACCACAA+TGG + chr7_4:61178236-61178255 Msa1168540:CDS 40.0%
GATCTCTCTCTCAATTGACT+TGG - chr7_4:61178296-61178315 Msa1168510:three_prime_UTR 40.0%
AGAAACAAAGCTTTGCATGG+TGG + chr7_4:61178352-61178371 Msa1168540:CDS 40.0%
! TTGCATGGTGGAAACTTTCA+AGG + chr7_4:61178364-61178383 Msa1168540:CDS 40.0%
! AACACCTATTGGAGTATCCA+TGG + chr7_4:61178387-61178406 Msa1168540:CDS 40.0%
AGCCAAACGTGTATTATCCA+TGG - chr7_4:61178407-61178426 Msa1168510:three_prime_UTR 40.0%
TGCTAGTAGAAATCCTAGCT+TGG + chr7_4:61178513-61178532 Msa1168540:CDS 40.0%
CAACCAAGATGTGAACTCTT+TGG + chr7_4:61178639-61178658 Msa1168540:CDS 40.0%
AACCCAAAGAGTTCACATCT+TGG - chr7_4:61178645-61178664 Msa1168510:three_prime_UTR 40.0%
TTGGCATAGTGCAATCAAGA+AGG - chr7_4:61178725-61178744 Msa1168510:three_prime_UTR 40.0%
TGCCAAAAAGACTCTTACCA+TGG + chr7_4:61168696-61168715 Msa1168540:CDS 40.0%
GCCAAAAAGACTCTTACCAT+GGG + chr7_4:61168697-61168716 Msa1168540:CDS 40.0%
! ACCCATGGTAAGAGTCTTTT+TGG - chr7_4:61168701-61168720 Msa1168510:intron 40.0%
! ACTTGTTGAAAGTGGTTGAC+AGG + chr7_4:61168760-61168779 Msa1168540:intron 40.0%
CTTGTTGAAAGTGGTTGACA+GGG + chr7_4:61168761-61168780 Msa1168540:intron 40.0%
ACCCGTTGAGTCAAAAACTA+AGG + chr7_4:61178941-61178960 Msa1168540:CDS 40.0%
!! GCCTTAGTTTTTGACTCAAC+GGG - chr7_4:61178945-61178964 Msa1168510:three_prime_UTR 40.0%
! TTCAACCTCTTTTGGCAAGA+GGG - chr7_4:61168951-61168970 Msa1168510:intron 40.0%
! TTTCAACCTCTTTTGGCAAG+AGG - chr7_4:61168952-61168971 Msa1168510:intron 40.0%
! CTTGCACTTTCAACCTCTTT+TGG - chr7_4:61168959-61168978 Msa1168510:intron 40.0%
! CAAAAGAGGTTGAAAGTGCA+AGG + chr7_4:61168957-61168976 Msa1168540:CDS 40.0%
CTGCATCCATTGATCTTGTT+TGG - chr7_4:61169013-61169032 Msa1168510:intron 40.0%
! CTAGGAACTGGTTTACTAAC+CGG + chr7_4:61179183-61179202 Msa1168540:CDS 40.0%
! CGGTGAAATGACATTTTCTC+CGG - chr7_4:61169089-61169108 Msa1168510:intron 40.0%
! CGGAGAAAATGTCATTTCAC+CGG + chr7_4:61169087-61169106 Msa1168540:CDS 40.0%
! GGAGAAAATGTCATTTCACC+GGG + chr7_4:61169088-61169107 Msa1168540:CDS 40.0%
CGATCCTCTTCTTGAATGTT+TGG + chr7_4:61179275-61179294 Msa1168540:CDS 40.0%
TCTCCCAAACATTCAAGAAG+AGG - chr7_4:61169166-61169185 Msa1168510:intron 40.0%
TTCTTGAATGTTTGGGAGAG+TGG + chr7_4:61169167-61169186 Msa1168540:CDS 40.0%
TTCAGTTTCCTCCAATGTCA+CGG + chr7_4:61179445-61179464 Msa1168540:three_prime_UTR 40.0%
TACAAGTTTCACCGTGACAT+TGG - chr7_4:61179459-61179478 Msa1168510:three_prime_UTR 40.0%
GCAAAGTGCAATCAAGAAGG+TGG - chr7_4:61168608-61168627 Msa1168510:intron 45.0%
ACTCTTACCATGGGTGTCAA+TGG + chr7_4:61168706-61168725 Msa1168540:CDS 45.0%
AAGTTCTCCATTGACACCCA+TGG - chr7_4:61168716-61168735 Msa1168510:intron 45.0%
! AAAGGGTATGTAGCGCTACA+AGG - chr7_4:61168813-61168832 Msa1168510:intron 45.0%
GTCAAAACTCAGGCAAGTGT+TGG + chr7_4:61168835-61168854 Msa1168540:CDS 45.0%
! CTGGGAACTGGTTTACTAAC+CGG + chr7_4:61169067-61169086 Msa1168540:CDS 45.0%
! AAATGTCATTTCACCGGGTG+AGG + chr7_4:61169093-61169112 Msa1168540:CDS 45.0%
GAATGTTTGGGAGAGTGGAA+TGG + chr7_4:61169172-61169191 Msa1168540:CDS 45.0%
TCGGAGTCTTTAGTTGCCAT+TGG + chr7_4:61169693-61169712 Msa1168540:intron 45.0%
CGGAGTCTTTAGTTGCCATT+GGG + chr7_4:61169694-61169713 Msa1168540:intron 45.0%
GTGAGAAAGAGATCTGGATG+AGG - chr7_4:61169895-61169914 Msa1168510:intron 45.0%
AACGCAGTGAGAAAGAGATC+TGG - chr7_4:61169901-61169920 Msa1168510:intron 45.0%
CAAAAGCCGCTGCATATGTA+AGG - chr7_4:61170286-61170305 Msa1168510:intron 45.0%
CGTGCTTAGCCTATATTGGA+TGG + chr7_4:61170606-61170625 Msa1168540:intron 45.0%
GCTGACATCATGGGTGATAA+TGG + chr7_4:61170672-61170691 Msa1168540:intron 45.0%
GTCTCTGTTTGTGTAACTGC+AGG + chr7_4:61171009-61171028 Msa1168540:intron 45.0%
TCCTTCCACCATATTGTCCA+TGG + chr7_4:61171546-61171565 Msa1168540:intron 45.0%
! ACCATGGACAATATGGTGGA+AGG - chr7_4:61171550-61171569 Msa1168510:intron 45.0%
GTGTTTACACATAGGAACGG+AGG - chr7_4:61171991-61172010 Msa1168510:intron 45.0%
AGGATGGTTACATATCGGGA+CGG + chr7_4:61172028-61172047 Msa1168540:intron 45.0%
! CAAATCTAAGAAGGTGTGCG+TGG - chr7_4:61172089-61172108 Msa1168510:intron 45.0%
ATCACTTGGGACCAGAATAG+TGG - chr7_4:61172744-61172763 Msa1168510:intron 45.0%
GGACGATAAGAAATGTGTGG+TGG - chr7_4:61173476-61173495 Msa1168510:intron 45.0%
GTGCCAATGTCATGTGACAT+TGG + chr7_4:61173887-61173906 Msa1168540:intron 45.0%
TGGCCAATGTCACATGACAT+TGG - chr7_4:61173893-61173912 Msa1168510:intron 45.0%
!!! AACGTGGCACTCTAGGATTT+TGG - chr7_4:61174479-61174498 Msa1168510:intron 45.0%
ATATTGCAACGTGGCACTCT+AGG - chr7_4:61174486-61174505 Msa1168510:intron 45.0%
CCGGTTATGATATTGCAACG+TGG - chr7_4:61174495-61174514 Msa1168510:intron 45.0%
GTGTGTTTGGTAGGTAGCTA+GGG - chr7_4:61174608-61174627 Msa1168510:intron 45.0%
TGTGTGTTTGGTAGGTAGCT+AGG - chr7_4:61174609-61174628 Msa1168510:intron 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr7_4:61174679-61174698 Msa1168540:intron 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr7_4:61174680-61174699 Msa1168540:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr7_4:61174839-61174858 Msa1168540:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr7_4:61174843-61174862 Msa1168510:intron 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr7_4:61174855-61174874 Msa1168510:intron 45.0%
TGATCCTTTGAATTGGGGTG+TGG + chr7_4:61175202-61175221 Msa1168540:CDS 45.0%
ATCTGCTAGGGATGGAGTTA+AGG + chr7_4:61175382-61175401 Msa1168540:CDS 45.0%
! GGAGAGTATGAACAAAGGCA+CGG + chr7_4:61175424-61175443 Msa1168540:CDS 45.0%
! AACAAAGGCACGGACAGTTA+CGG + chr7_4:61175434-61175453 Msa1168540:CDS 45.0%
! AAGCACCACCTTGTTTGGTA+CGG - chr7_4:61175493-61175512 Msa1168510:three_prime_UTR 45.0%
!! GGCCTTCTTCATTTTGATGG+AGG + chr7_4:61176614-61176633 Msa1168540:intron 45.0%
CGCCTCCATCAAAATGAAGA+AGG - chr7_4:61176619-61176638 Msa1168510:intron 45.0%
TGACGTATACCTCTACCACT+TGG + chr7_4:61176827-61176846 Msa1168540:intron 45.0%
GTATACCTCTACCACTTGGA+CGG + chr7_4:61176831-61176850 Msa1168540:intron 45.0%
CAAACATGGTATGCAGCAGA+TGG - chr7_4:61177197-61177216 Msa1168510:intron 45.0%
AGACACCGACAAGAAGAAGA+AGG - chr7_4:61177493-61177512 Msa1168510:intron 45.0%
AGAATCAACACACTCCTCCA+AGG + chr7_4:61177668-61177687 Msa1168540:CDS 45.0%
ACACTCCTCCAAGGTTATTC+AGG + chr7_4:61177677-61177696 Msa1168540:CDS 45.0%
AAGCGGTAAACATGGAGTGA+CGG - chr7_4:61177750-61177769 Msa1168510:three_prime_UTR 45.0%
TCAAAAGCTCATGGACCATC+TGG + chr7_4:61177845-61177864 Msa1168540:CDS 45.0%
! ACAAGGGCAAGACCTTCTTT+TGG - chr7_4:61177938-61177957 Msa1168510:three_prime_UTR 45.0%
GAAGGTCTTGCCCTTGTTAA+CGG + chr7_4:61177941-61177960 Msa1168540:CDS 45.0%
CAACAGCTGTTCCGTTAACA+AGG - chr7_4:61177955-61177974 Msa1168510:three_prime_UTR 45.0%
CTTGTTAACGGAACAGCTGT+TGG + chr7_4:61177953-61177972 Msa1168540:CDS 45.0%
AGAACTTCACCACAATGGCT+TGG + chr7_4:61178241-61178260 Msa1168540:CDS 45.0%
CTCAGAACAATAGGAAGCCA+TGG - chr7_4:61178566-61178585 Msa1168510:three_prime_UTR 45.0%
CATGAGCTGAAGGATCTCAA+TGG - chr7_4:61178695-61178714 Msa1168510:three_prime_UTR 45.0%
GCATAGTGCAATCAAGAAGG+TGG - chr7_4:61178722-61178741 Msa1168510:three_prime_UTR 45.0%
ACTCTTACCATGGGTGTCAA+TGG + chr7_4:61168706-61168725 Msa1168540:CDS 45.0%
AAGTTCTCCATTGACACCCA+TGG - chr7_4:61168716-61168735 Msa1168510:intron 45.0%
TGGGTTTCCACTCTCATATG+CGG - chr7_4:61179100-61179119 Msa1168510:three_prime_UTR 45.0%
AAGTTTGTGAGAGAGGAGCT+AGG + chr7_4:61179165-61179184 Msa1168540:CDS 45.0%
! AAATGTCATTTCACCGGGTG+AGG + chr7_4:61169093-61169112 Msa1168540:CDS 45.0%
GAATGTTTGGGAGAGTGGAA+CGG + chr7_4:61169172-61169191 Msa1168540:CDS 45.0%
GACATTGGAGGAAACTGAAC+TGG - chr7_4:61179444-61179463 Msa1168510:three_prime_UTR 45.0%
AAGTTTCACCGTGACATTGG+AGG - chr7_4:61179456-61179475 Msa1168510:three_prime_UTR 45.0%
!!! AAATTTTCAATATTAATTAA+AGG - chr7_4:61169293-61169312 Msa1168510:intron 5.0%
!!! AAAAATAAATTTTAATTTTG+CGG - chr7_4:61170313-61170332 Msa1168510:intron 5.0%
!!! AATTATCTTTTATTATATAT+TGG + chr7_4:61172285-61172304 Msa1168540:intron 5.0%
!!! AAATTATAATATATATGTTT+TGG - chr7_4:61172628-61172647 Msa1168510:intron 5.0%
!! CAAATTTAATTAATATAAAT+TGG + chr7_4:61175682-61175701 Msa1168540:intron 5.0%
!!! ATATAATTTTAATAGATTTT+GGG - chr7_4:61176173-61176192 Msa1168510:intron 5.0%
!!! TATAAATTTAGTTTATTAAA+CGG - chr7_4:61177299-61177318 Msa1168510:intron 5.0%
!!! AATTATATGATTTTTATTTT+AGG + chr7_4:61177462-61177481 Msa1168540:intron 5.0%
GAAGACCCTCTTGCCAAAAG+AGG + chr7_4:61168943-61168962 Msa1168540:CDS 50.0%
TGGGGTTCCACTCTCATATG+CGG - chr7_4:61168984-61169003 Msa1168510:intron 50.0%
AGTTTGTCACACTCCTCACC+CGG - chr7_4:61169109-61169128 Msa1168510:intron 50.0%
ACAATGTAGCGCAAAGGGAC+TGG - chr7_4:61169834-61169853 Msa1168510:intron 50.0%
GGAGCACAATGTAGCGCAAA+GGG - chr7_4:61169839-61169858 Msa1168510:intron 50.0%
! AGGAGCACAATGTAGCGCAA+AGG - chr7_4:61169840-61169859 Msa1168510:intron 50.0%
ATCCCGCCTTACATATGCAG+CGG + chr7_4:61170277-61170296 Msa1168540:intron 50.0%
AAGCCGCTGCATATGTAAGG+CGG - chr7_4:61170283-61170302 Msa1168510:intron 50.0%
TGAGGAGGATGCTGACATCA+TGG + chr7_4:61170662-61170681 Msa1168540:intron 50.0%
GAGGAGGATGCTGACATCAT+GGG + chr7_4:61170663-61170682 Msa1168540:intron 50.0%
AACGGTTGAGGTTGCACTCA+AGG + chr7_4:61170924-61170943 Msa1168540:intron 50.0%
! GTAACTGCAGGTGTTAGCCT+TGG + chr7_4:61171021-61171040 Msa1168540:intron 50.0%
AAGTCAGAAAGCCTGCACCA+AGG - chr7_4:61171041-61171060 Msa1168510:intron 50.0%
ATGGTTACATATCGGGACGG+AGG + chr7_4:61172031-61172050 Msa1168540:intron 50.0%
TGGTTACATATCGGGACGGA+GGG + chr7_4:61172032-61172051 Msa1168540:intron 50.0%
GGTAGCACTTGGGTGACATT+GGG + chr7_4:61173864-61173883 Msa1168540:intron 50.0%
GTAGCACTTGGGTGACATTG+GGG + chr7_4:61173865-61173884 Msa1168540:intron 50.0%
!! GGTTGGTAGATTGGTGTGAG+TGG - chr7_4:61174441-61174460 Msa1168510:intron 50.0%
AGGGAGAGACAAGTTGCACA+AGG - chr7_4:61174589-61174608 Msa1168510:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr7_4:61174690-61174709 Msa1168510:intron 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr7_4:61174691-61174710 Msa1168510:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr7_4:61174838-61174857 Msa1168540:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr7_4:61174844-61174863 Msa1168510:intron 50.0%
TGACGAATCCTCTCCCATTC+AGG + chr7_4:61174898-61174917 Msa1168540:intron 50.0%
GACGAATCCTCTCCCATTCA+GGG + chr7_4:61174899-61174918 Msa1168540:intron 50.0%
CTTTAGTCCCTGAATGGGAG+AGG - chr7_4:61174909-61174928 Msa1168510:intron 50.0%
GAAAGGCAGTCACCTTGATG+AGG + chr7_4:61175238-61175257 Msa1168540:CDS 50.0%
CCATACGCTTCACCTCATCA+AGG - chr7_4:61175253-61175272 Msa1168510:three_prime_UTR 50.0%
CCTTGATGAGGTGAAGCGTA+TGG + chr7_4:61175250-61175269 Msa1168540:CDS 50.0%
TGATGAGGTGAAGCGTATGG+TGG + chr7_4:61175253-61175272 Msa1168540:CDS 50.0%
CGAGACACTGACGATTTCTC+AGG + chr7_4:61175310-61175329 Msa1168540:intron 50.0%
GACACTGACGATTTCTCAGG+TGG + chr7_4:61175313-61175332 Msa1168540:intron 50.0%
ACCATGGTCATGTGCAGCAA+TGG - chr7_4:61175342-61175361 Msa1168510:three_prime_UTR 50.0%
TGGAGCTGTCTGAATCTGCT+AGG + chr7_4:61175369-61175388 Msa1168540:CDS 50.0%
GGAGCTGTCTGAATCTGCTA+GGG + chr7_4:61175370-61175389 Msa1168540:CDS 50.0%
CTGTCTGAATCTGCTAGGGA+TGG + chr7_4:61175374-61175393 Msa1168540:CDS 50.0%
AGTTAAGGCCAGCAGTGACT+GGG + chr7_4:61175397-61175416 Msa1168540:CDS 50.0%
! CTGCAAAGCACCACCTTGTT+TGG - chr7_4:61175498-61175517 Msa1168510:three_prime_UTR 50.0%
!! CATTTTGATGGAGGCGTGAC+AGG + chr7_4:61176623-61176642 Msa1168540:intron 50.0%
GATTTCCGTCCAAGTGGTAG+AGG - chr7_4:61176839-61176858 Msa1168510:intron 50.0%
ACTCCATGTTTACCGCTTCG+TGG + chr7_4:61177752-61177771 Msa1168540:CDS 50.0%
GTACCACGAAGCGGTAAACA+TGG - chr7_4:61177758-61177777 Msa1168510:three_prime_UTR 50.0%
GCTGTGATTGTACCACGAAG+CGG - chr7_4:61177767-61177786 Msa1168510:three_prime_UTR 50.0%
CGTGGTACAATCACAGCTTC+AGG + chr7_4:61177770-61177789 Msa1168540:CDS 50.0%
!! AACGGAACAGCTGTTGGTTC+CGG + chr7_4:61177959-61177978 Msa1168540:CDS 50.0%
! CACAAGTTGAAACACCACCC+TGG + chr7_4:61178097-61178116 Msa1168540:CDS 50.0%
ACACCACCCTGGTCAAATTG+AGG + chr7_4:61178108-61178127 Msa1168540:CDS 50.0%
CAGCAGCCTCAATTTGACCA+GGG - chr7_4:61178117-61178136 Msa1168510:three_prime_UTR 50.0%
!! ACCACAATGGCTTGGTCCTT+TGG + chr7_4:61178249-61178268 Msa1168540:CDS 50.0%
ACCAAAGGACCAAGCCATTG+TGG - chr7_4:61178253-61178272 Msa1168510:three_prime_UTR 50.0%
!! CGTTTGGCTCTCGCATCAAT+TGG + chr7_4:61178418-61178437 Msa1168540:CDS 50.0%
CAAGGGAGCTGAAATTGCCA+TGG + chr7_4:61178546-61178565 Msa1168540:CDS 50.0%
! CTTTGGACGTGGGTTGTAAC+CGG - chr7_4:61178607-61178626 Msa1168510:three_prime_UTR 50.0%
AGGTGGAAGACATGAGCTGA+AGG - chr7_4:61178705-61178724 Msa1168510:three_prime_UTR 50.0%
AACGGGTATGTAGCGCTACA+AGG - chr7_4:61178928-61178947 Msa1168510:three_prime_UTR 50.0%
GAAGACCCTCTTGCCAAAAG+AGG + chr7_4:61168943-61168962 Msa1168540:CDS 50.0%
AGTTTGTCACACTCCTCACC+CGG - chr7_4:61169109-61169128 Msa1168510:intron 50.0%
GCAAGGTCCGCATATGAGAG+TGG + chr7_4:61168974-61168993 Msa1168540:intron 55.0%
GTTAGAGAGGAGCTGGGAAC+TGG + chr7_4:61169055-61169074 Msa1168540:CDS 55.0%
AGCCGCTGCATATGTAAGGC+GGG - chr7_4:61170282-61170301 Msa1168510:intron 55.0%
TTAGTGTGGTGTGGAAGGGG+CGG - chr7_4:61171959-61171978 Msa1168510:intron 55.0%
GGTTACATATCGGGACGGAG+GGG + chr7_4:61172033-61172052 Msa1168540:intron 55.0%
GTTACATATCGGGACGGAGG+GGG + chr7_4:61172034-61172053 Msa1168540:intron 55.0%
TCACTCGTTACGAGGCCTGT+GGG - chr7_4:61172199-61172218 Msa1168510:intron 55.0%
ATCACTCGTTACGAGGCCTG+TGG - chr7_4:61172200-61172219 Msa1168510:intron 55.0%
GGGTAGCACTTGGGTGACAT+TGG + chr7_4:61173863-61173882 Msa1168540:intron 55.0%
TTGACTCACAGCTCGCTCTC+TGG + chr7_4:61174355-61174374 Msa1168540:intron 55.0%
GCTGCCACACCCCAATTCAA+AGG - chr7_4:61175209-61175228 Msa1168510:three_prime_UTR 55.0%
GTGGCAGCTGAGGCAATGAA+AGG + chr7_4:61175221-61175240 Msa1168540:CDS 55.0%
TGAGGTGAAGCGTATGGTGG+AGG + chr7_4:61175256-61175275 Msa1168540:CDS 55.0%
! AGCGTATGGTGGAGGAGTAC+CGG + chr7_4:61175264-61175283 Msa1168540:CDS 55.0%
TCAGTGTCTCGCCACCAAGA+CGG - chr7_4:61175301-61175320 Msa1168510:three_prime_UTR 55.0%
GCCATTGCTGCACATGACCA+TGG + chr7_4:61175338-61175357 Msa1168540:CDS 55.0%
TGCACATGACCATGGTGTGC+AGG + chr7_4:61175346-61175365 Msa1168540:CDS 55.0%
ACATGACCATGGTGTGCAGG+TGG + chr7_4:61175349-61175368 Msa1168540:CDS 55.0%
GAGTTAAGGCCAGCAGTGAC+TGG + chr7_4:61175396-61175415 Msa1168540:CDS 55.0%
!! GACAGTTACGGTGTCACCAC+CGG + chr7_4:61175446-61175465 Msa1168540:CDS 55.0%
!! ACAGTTACGGTGTCACCACC+GGG + chr7_4:61175447-61175466 Msa1168540:CDS 55.0%
TTGTTTGGTACGGCGGTGTG+AGG - chr7_4:61175483-61175502 Msa1168510:three_prime_UTR 55.0%
TCACACCGCCGTACCAAACA+AGG + chr7_4:61175482-61175501 Msa1168540:CDS 55.0%
! CACCACCTTGTTTGGTACGG+CGG - chr7_4:61175490-61175509 Msa1168510:three_prime_UTR 55.0%
! TGAACAAGGGCGGGCTTTCT+CGG - chr7_4:61176203-61176222 Msa1168510:intron 55.0%
CAGCCTCAATTTGACCAGGG+TGG - chr7_4:61178114-61178133 Msa1168510:three_prime_UTR 55.0%
GCAGCAGCCTCAATTTGACC+AGG - chr7_4:61178118-61178137 Msa1168510:three_prime_UTR 55.0%
CTGCTCAGCACTTTGGACGT+GGG - chr7_4:61178617-61178636 Msa1168510:three_prime_UTR 55.0%
! GGTTGTGCTGCTCAGCACTT+TGG - chr7_4:61178624-61178643 Msa1168510:three_prime_UTR 55.0%
GCAAGGACCGCATATGAGAG+TGG + chr7_4:61179090-61179109 Msa1168540:CDS 55.0%
GTGAGAGAGGAGCTAGGAAC+TGG + chr7_4:61179171-61179190 Msa1168540:CDS 55.0%
!! GCAGGTGTTAGCCTTGGTGC+AGG + chr7_4:61171027-61171046 Msa1168540:intron 60.0%
GTGTGGAAGGGGCGGCATTT+GGG - chr7_4:61171951-61171970 Msa1168510:intron 60.0%
GAATTGGGGTGTGGCAGCTG+AGG + chr7_4:61175211-61175230 Msa1168540:CDS 60.0%
ACAGCTCCACCTGCACACCA+TGG - chr7_4:61175358-61175377 Msa1168510:three_prime_UTR 60.0%
CTCCATCACCCAGTCACTGC+TGG - chr7_4:61175408-61175427 Msa1168510:three_prime_UTR 60.0%
!! TACGGTGTCACCACCGGGTT+CGG + chr7_4:61175452-61175471 Msa1168540:CDS 60.0%
TTTGGTACGGCGGTGTGAGG+TGG - chr7_4:61175480-61175499 Msa1168510:three_prime_UTR 60.0%
CACCGCCGTACCAAACAAGG+TGG + chr7_4:61175485-61175504 Msa1168540:CDS 60.0%
GCTGCTCTTGTTGCCGTGTG+TGG - chr7_4:61177638-61177657 Msa1168510:three_prime_UTR 60.0%
GCTGCTCAGCACTTTGGACG+TGG - chr7_4:61178618-61178637 Msa1168510:three_prime_UTR 60.0%
GGTGTGGAAGGGGCGGCATT+TGG - chr7_4:61171952-61171971 Msa1168510:intron 65.0%
CAGCTCGCTCTCTGGCTAGC+TGG + chr7_4:61174363-61174382 Msa1168540:intron 65.0%
!! GGTGGAGGAGTACCGGAAGC+CGG + chr7_4:61175271-61175290 Msa1168540:CDS 65.0%
!! CAAGACGGACCACCGGCTTC+CGG - chr7_4:61175286-61175305 Msa1168510:three_prime_UTR 65.0%
AAGCCGGTGGTCCGTCTTGG+TGG + chr7_4:61175287-61175306 Msa1168540:intron 65.0%
TCGCCACCAAGACGGACCAC+CGG - chr7_4:61175293-61175312 Msa1168510:three_prime_UTR 65.0%
GGCCAGCAGTGACTGGGTGA+TGG + chr7_4:61175403-61175422 Msa1168540:CDS 65.0%
!! GGAGGAGTACCGGAAGCCGG+TGG + chr7_4:61175274-61175293 Msa1168540:CDS 70.0%
CGGAAGCCGGTGGTCCGTCT+TGG + chr7_4:61175284-61175303 Msa1168540:intron 70.0%
! GTGTGAGGTGGCGCCGAACC+CGG - chr7_4:61175468-61175487 Msa1168510:three_prime_UTR 70.0%
! TGAGGTGGCGCCGAACCCGG+TGG - chr7_4:61175465-61175484 Msa1168510:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 61168598 61179580 61168598 ID=Msa1168540;Name=Msa1168540
chr7_4 mRNA 61168598 61179580 61168598 ID=Msa1168540-mRNA-1;Parent=Msa1168540;Name=Msa1168540-mRNA-1;_AED=0.21;_eAED=0.22;_QI=0|0.2|0.16|1|0.2|0.16|6|248|872
chr7_4 exon 61168598 61168750 61168598 ID=Msa1168540-mRNA-1:exon:19291;Parent=Msa1168540-mRNA-1
chr7_4 exon 61168818 61168978 61168818 ID=Msa1168540-mRNA-1:exon:19292;Parent=Msa1168540-mRNA-1
chr7_4 exon 61169033 61169193 61169033 ID=Msa1168540-mRNA-1:exon:19293;Parent=Msa1168540-mRNA-1
chr7_4 exon 61175102 61175295 61175102 ID=Msa1168540-mRNA-1:exon:19294;Parent=Msa1168540-mRNA-1
chr7_4 exon 61175332 61175531 61175332 ID=Msa1168540-mRNA-1:exon:19295;Parent=Msa1168540-mRNA-1
chr7_4 exon 61177583 61179580 61177583 ID=Msa1168540-mRNA-1:exon:19296;Parent=Msa1168540-mRNA-1
chr7_4 CDS 61168598 61168750 61168598 ID=Msa1168540-mRNA-1:cds;Parent=Msa1168540-mRNA-1
chr7_4 CDS 61168818 61168978 61168818 ID=Msa1168540-mRNA-1:cds;Parent=Msa1168540-mRNA-1
chr7_4 CDS 61169033 61169193 61169033 ID=Msa1168540-mRNA-1:cds;Parent=Msa1168540-mRNA-1
chr7_4 CDS 61175102 61175295 61175102 ID=Msa1168540-mRNA-1:cds;Parent=Msa1168540-mRNA-1
chr7_4 CDS 61175332 61175531 61175332 ID=Msa1168540-mRNA-1:cds;Parent=Msa1168540-mRNA-1
chr7_4 CDS 61177583 61179332 61177583 ID=Msa1168540-mRNA-1:cds;Parent=Msa1168540-mRNA-1
chr7_4 three_prime_UTR 61179333 61179580 61179333 ID=Msa1168540-mRNA-1:three_prime_utr;Parent=Msa1168540-mRNA-1
Gene Sequence

>Msa1168540

ATGTCTTCCACCTTCTTGATTGCACTTTGCCAAGCAATTGATTTAAGACATTTGGAGGAGAACTTGAAAAACTCAGTCAAGAACACCGTAAGTCAAGTTGCCAAAAAGACTCTTACCATGGGTGTCAATGGAGAACTTCACCCTTCAAGATTTCGCTACATACCCTTTGAGTCAAAACTCAGGCAAGTGTTGGTAGATCATGCACTAGTTAATGGAGAGAGTGAGAAGAATTTGAACACTTCAATCTTTCAAAAGATTTCAACTTTTGAGGAAGAGTTGAAGACCCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGTCTTATCCACTTTACAAATTTGTTAGAGAGGAGCTGGGAACTGGTTTACTAACCGGAGAAAATGTCATTTCACCGGGTGAGGAGTGTGACAAACTATTTTCAGCTATGTGTCATGGAAAAATCATTGATCCTCTTCTTGAATGTTTGGGAGAGTGGAATGATATGGAAACAATATCAGCAGCTATCACAAAAAACAATGCCAATGAATCATTCTGCTTGATTCATGCTAAGAATAATAACGACATGAAAGTGAATGAAGCTGATCCTTTGAATTGGGGTGTGGCAGCTGAGGCAATGAAAGGCAGTCACCTTGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCGGTGGTGGCTGCCATTGCTGCACATGACCATGGTGTGCAGGTGGAGCTGTCTGAATCTGCTAGGGATGGAGTTAAGGCCAGCAGTGACTGGGTGATGGAGAGTATGAACAAAGGCACGGACAGTTACGGTGTCACCACCGGGTTCGGCGCCACCTCACACCGCCGTACCAAACAAGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTTTGAATGCAGGAATATTCGGAAATGGAACAGAGTCAAATCACACACTACCACACACGGCAACAAGAGCAGCCATGCTAGTGAGAATCAACACACTCCTCCAAGGTTATTCAGGAATTAGATTTGAAATCTTGGAAGCCATCACTAAGCTCCTTAACAAAACCGTCACTCCATGTTTACCGCTTCGTGGTACAATCACAGCTTCAGGAGATTTAGTTCCTCTTTCATACATTGCTGGTTTACTCACCGGAAGACCAAATTCAAAAGCTCATGGACCATCTGGAGAAGTACTTAATGCAAAAGAAGCTTTTAATTTGGCTGGAATCAATGCTGAGTTCTTTGAATTACAACCAAAAGAAGGTCTTGCCCTTGTTAACGGAACAGCTGTTGGTTCCGGTTTAGCTTCTATTGTTCTCTTTGAGGCTAACATTTTGGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTTATGCAAGGGAAACCTGAATTTACCGATCATTTGACACACAAGTTGAAACACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGACGGAAGTGCTTATGTCAAAGCAGCTAAGAAGTTGCATGAGATAGATCCTTTGCAGAAGCCAAAACAAGATAGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTTTGGTTGAAGTGATTAGATTCTCTACCAAGTCAATTGAGAGAGAGATCAACTCTGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCTTTGCATGGTGGAAACTTTCAAGGAACACCTATTGGAGTATCCATGGATAATACACGTTTGGCTCTCGCATCAATTGGCAAACTTATGTTTGCTCAATTCTCTGAGCTTGTTAATGACTTTTACAACAATGGATTGCCTTCAAATCTTTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGTTCTGAGTTGCAATATCTTGCAAATCCGGTTACAACCCACGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTGCTAGAAAAACAAATGAAGCCATTGAGATCCTTCAGCTCATGTCTTCCACCTTCTTGATTGCACTATGCCAAGCAATTGATTTAAGACATTTGGAGGAGAACTTGAAAAACTCAGTCAAGAACACCGTAAGTCAAGTTGCCAAAAAGACTCTTACCATGGGTGTCAATGGAGAACTTCACCCTTCAAGATTCTGTGAAAAAGACTTGTTGAAAGTGGTTGACAGGGAGCATGTATTTGCTTATATTGATGATCCTTGTAGCGCTACATACCCGTTGAGTCAAAAACTAAGGCAAGTGTTGGTAGATCATGCACTAGTTAATGGAGAGAGTGAGAAGAATTTTAACACTTCAATCTTTCAAAAGATTGCTACTTTTGAGGAAGAGTTGAAGACCCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGACCGCATATGAGAGTGGAAACCCAACAATCCCAAACAAGATCAATGGATGCAGATCTTATCCACTTTACAAGTTTGTGAGAGAGGAGCTAGGAACTGGTTTACTAACCGGAGAAAATGTCATTTCACCGGGTGAGGAGTGTGACAAACTATTTTCAGCTATGTGTCAGGGAAAAATCATCGATCCTCTTCTTGAATGTTTGGGAGAGTGGAACGGTGCTCCTCTTCCTATTTGTTAA
Protein sequence

>Msa1168540

MSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTLTMGVNGELHPSRFRYIPFESKLRQVLVDHALVNGESEKNLNTSIFQKISTFEEELKTLLPKEVESARSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCHGKIIDPLLECLGEWNDMETISAAITKNNANESFCLIHAKNNNDMKVNEADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVAAIAAHDHGVQVELSESARDGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNKTVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEVLNAKEAFNLAGINAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKTNEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLSQKLRQVLVDHALVNGESEKNFNTSIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPIC*