Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1081830 | XP_003625902.3 | 96.732 | 306 | 9 | 1 | 1 | 305 | 1 | 306 | 0.0 | 600 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1081830 | sp|Q84J88|HIP36_ARATH | 59.155 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 5.24e-23 | 100 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1081830 | A0A396H6Q4 | 96.732 | 306 | 9 | 1 | 1 | 305 | 1 | 306 | 0.0 | 600 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0684070 | Msa1081830 | 0.800745 | 1.247559e-48 | -8.615850e-47 |
Msa1081830 | Msa1166040 | 0.860452 | 2.045214e-63 | -8.615850e-47 |
Msa1081830 | Msa1396330 | 0.863291 | 2.764594e-64 | -8.615850e-47 |
Msa0581210 | Msa1081830 | 0.886266 | 3.971759e-72 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1081830 | MtrunA17_Chr7g0269081 | 96.732 | 306 | 9 | 1 | 1 | 305 | 1 | 306 | 0.0 | 600 |
Msa1081830 | MtrunA17_Chr4g0067291 | 34.906 | 318 | 146 | 15 | 19 | 305 | 71 | 358 | 2.07e-33 | 125 |
Msa1081830 | MtrunA17_Chr1g0208301 | 67.606 | 71 | 23 | 0 | 16 | 86 | 7 | 77 | 3.00e-26 | 106 |
Msa1081830 | MtrunA17_Chr2g0287751 | 67.143 | 70 | 23 | 0 | 17 | 86 | 5 | 74 | 2.16e-24 | 102 |
Msa1081830 | MtrunA17_Chr0c22g0493881 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 2.46e-23 | 98.6 |
Msa1081830 | MtrunA17_Chr4g0065651 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 2.70e-23 | 99.8 |
Msa1081830 | MtrunA17_Chr2g0296001 | 44.615 | 130 | 64 | 1 | 2 | 131 | 61 | 182 | 1.33e-22 | 96.3 |
Msa1081830 | MtrunA17_Chr4g0065621 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 2.68e-22 | 95.9 |
Msa1081830 | MtrunA17_Chr7g0272571 | 46.721 | 122 | 56 | 2 | 22 | 141 | 33 | 147 | 8.70e-22 | 94.0 |
Msa1081830 | MtrunA17_Chr1g0192131 | 55.056 | 89 | 32 | 2 | 1 | 88 | 1 | 82 | 8.72e-22 | 94.4 |
Msa1081830 | MtrunA17_Chr1g0191671 | 57.143 | 70 | 30 | 0 | 17 | 86 | 5 | 74 | 1.24e-19 | 89.0 |
Msa1081830 | MtrunA17_Chr3g0111541 | 48.611 | 72 | 37 | 0 | 17 | 88 | 7 | 78 | 6.90e-16 | 75.1 |
Msa1081830 | MtrunA17_Chr2g0287741 | 61.905 | 63 | 24 | 0 | 24 | 86 | 17 | 79 | 2.83e-15 | 76.3 |
Msa1081830 | MtrunA17_Chr1g0160201 | 43.478 | 69 | 39 | 0 | 22 | 90 | 25 | 93 | 1.13e-14 | 70.1 |
Msa1081830 | MtrunA17_Chr4g0036931 | 44.444 | 72 | 39 | 1 | 20 | 90 | 26 | 97 | 1.32e-14 | 70.1 |
Msa1081830 | MtrunA17_Chr3g0124411 | 47.887 | 71 | 37 | 0 | 20 | 90 | 28 | 98 | 1.79e-14 | 69.7 |
Msa1081830 | MtrunA17_Chr8g0382721 | 47.692 | 65 | 34 | 0 | 26 | 90 | 33 | 97 | 1.49e-13 | 67.0 |
Msa1081830 | MtrunA17_Chr5g0407821 | 42.424 | 66 | 38 | 0 | 22 | 87 | 23 | 88 | 2.05e-13 | 66.6 |
Msa1081830 | MtrunA17_Chr7g0218981 | 40.000 | 70 | 42 | 0 | 19 | 88 | 1 | 70 | 3.47e-13 | 65.5 |
Msa1081830 | MtrunA17_Chr3g0115421 | 40.000 | 65 | 39 | 0 | 26 | 90 | 30 | 94 | 2.43e-12 | 63.5 |
Msa1081830 | MtrunA17_Chr1g0198341 | 41.892 | 74 | 42 | 1 | 22 | 94 | 4 | 77 | 2.96e-12 | 61.6 |
Msa1081830 | MtrunA17_Chr3g0145621 | 37.500 | 72 | 44 | 1 | 20 | 90 | 24 | 95 | 4.56e-12 | 63.2 |
Msa1081830 | MtrunA17_Chr5g0405811 | 35.955 | 89 | 47 | 2 | 20 | 98 | 27 | 115 | 4.70e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1081830 | AT3G06130.2 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 5.02e-24 | 100 |
Msa1081830 | AT5G27690.1 | 59.155 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 5.33e-24 | 100 |
Msa1081830 | AT3G06130.1 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 6.67e-24 | 101 |
Msa1081830 | AT5G19090.2 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 7.31e-23 | 98.6 |
Msa1081830 | AT5G19090.3 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 7.31e-23 | 98.6 |
Msa1081830 | AT5G19090.5 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.13e-22 | 98.6 |
Msa1081830 | AT5G19090.4 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.13e-22 | 98.6 |
Msa1081830 | AT5G19090.1 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.13e-22 | 98.6 |
Msa1081830 | AT1G23000.1 | 45.455 | 99 | 46 | 1 | 16 | 106 | 7 | 105 | 2.99e-21 | 92.8 |
Msa1081830 | AT1G23000.2 | 45.455 | 99 | 46 | 1 | 16 | 106 | 67 | 165 | 6.31e-21 | 92.8 |
Msa1081830 | AT1G56210.1 | 54.286 | 70 | 32 | 0 | 21 | 90 | 39 | 108 | 7.65e-20 | 89.0 |
Msa1081830 | AT3G05220.1 | 55.714 | 70 | 31 | 0 | 17 | 86 | 5 | 74 | 2.06e-18 | 85.9 |
Msa1081830 | AT5G37860.1 | 48.611 | 72 | 37 | 0 | 22 | 93 | 10 | 81 | 1.79e-15 | 75.1 |
Msa1081830 | AT1G71050.1 | 42.029 | 69 | 40 | 0 | 22 | 90 | 28 | 96 | 2.16e-13 | 67.0 |
Msa1081830 | AT3G56240.3 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.47e-12 | 62.8 |
Msa1081830 | AT3G56240.1 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.47e-12 | 62.8 |
Msa1081830 | AT4G38580.1 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.76e-12 | 63.5 |
Msa1081830 | AT4G38580.2 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.76e-12 | 63.5 |
Msa1081830 | AT1G06330.1 | 45.902 | 61 | 33 | 0 | 26 | 86 | 6 | 66 | 4.84e-12 | 63.2 |
Msa1081830 | AT3G56891.1 | 43.548 | 62 | 35 | 0 | 26 | 87 | 20 | 81 | 1.10e-11 | 62.8 |
Msa1081830 | AT3G56891.2 | 43.103 | 58 | 33 | 0 | 30 | 87 | 1 | 58 | 1.53e-11 | 61.6 |
Msa1081830 | AT4G08570.1 | 38.889 | 72 | 43 | 1 | 20 | 90 | 24 | 95 | 2.31e-11 | 61.2 |
Msa1081830 | AT1G22990.1 | 41.429 | 70 | 40 | 1 | 22 | 90 | 29 | 98 | 2.45e-11 | 61.2 |
Msa1081830 | AT5G66110.3 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 2.98e-11 | 60.8 |
Msa1081830 | AT5G66110.1 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 2.98e-11 | 60.8 |
Msa1081830 | AT1G66240.1 | 38.462 | 65 | 40 | 0 | 22 | 86 | 33 | 97 | 4.19e-11 | 59.3 |
Msa1081830 | AT1G22990.2 | 40.299 | 67 | 39 | 1 | 25 | 90 | 27 | 93 | 4.46e-11 | 60.5 |
Find 103 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAGAGGGTGGAGGAGGTGG+AGG | 0.275287 | 7_2:-81755195 | None:intergenic |
GCTTCATTAACTCCAAATAA+TGG | 0.285010 | 7_2:+81754898 | Msa1081830:CDS |
GCTTAGTGGAGTGGAAAATA+AGG | 0.302835 | 7_2:-81753470 | None:intergenic |
CAGCACAAGGTTACAGTTAC+TGG | 0.314426 | 7_2:+81754541 | Msa1081830:CDS |
AAGAGTCAAGAAAATTCTTC+AGG | 0.319616 | 7_2:+81753763 | Msa1081830:CDS |
TAGTACATATGTGGTGGATA+TGG | 0.331565 | 7_2:-81755042 | None:intergenic |
GTTAATTAGTGCTTAATGTA+AGG | 0.337945 | 7_2:+81755337 | Msa1081830:three_prime_UTR |
AACTGAAAATATTATGAATA+AGG | 0.342413 | 7_2:+81754681 | Msa1081830:CDS |
TGTTGATCAGCAGCTGGTTT+GGG | 0.352102 | 7_2:-81753532 | None:intergenic |
ATTAGAAACACTCAAGTATC+AGG | 0.357551 | 7_2:+81753567 | Msa1081830:CDS |
CAGCCATTTGAAATGAAGTT+TGG | 0.358581 | 7_2:-81753507 | None:intergenic |
ATCAAGAAGCTTTCAAGATC+AGG | 0.368275 | 7_2:+81754586 | Msa1081830:CDS |
TTGTTGATCAGCAGCTGGTT+TGG | 0.374527 | 7_2:-81753533 | None:intergenic |
GGATGAGAGGGTGGAGGAGG+TGG | 0.374539 | 7_2:-81755198 | None:intergenic |
ATACTTGAGTGTTTCTAATC+CGG | 0.381184 | 7_2:-81753563 | None:intergenic |
GCAGAGCATTACAATGCTAT+TGG | 0.387344 | 7_2:-81755717 | None:intergenic |
AGCACTTCTTCTTATTATGT+TGG | 0.397233 | 7_2:+81755132 | Msa1081830:CDS |
TAATGCAGATGTTGCAAAGT+TGG | 0.403647 | 7_2:-81755504 | None:intergenic |
TCTAAGTGGGGTGTGTTTGT+TGG | 0.404477 | 7_2:-81753432 | None:intergenic |
CAACCAAACTTCATTTCAAA+TGG | 0.404986 | 7_2:+81753504 | Msa1081830:exon |
GTGTAGTTTGCTTGCTGGTA+TGG | 0.419290 | 7_2:+81755598 | Msa1081830:three_prime_UTR |
TGCTTAATGTAAGGGAAAGT+GGG | 0.420370 | 7_2:+81755346 | Msa1081830:three_prime_UTR |
GCTACTGCTGGAGGAGGGTG+TGG | 0.422467 | 7_2:-81755066 | None:intergenic |
TAAGAAGAAGTGCTAGAAAC+AGG | 0.428358 | 7_2:-81755123 | None:intergenic |
ATATGGTGTAGTTTGCTTGC+TGG | 0.428624 | 7_2:+81755593 | Msa1081830:three_prime_UTR |
CTCACACCCTTTAAAAGCAT+TGG | 0.430712 | 7_2:+81753404 | Msa1081830:five_prime_UTR |
AAAATTCTTCAGGGAATTGA+AGG | 0.432486 | 7_2:+81753773 | Msa1081830:CDS |
ATTGTAGCTTTGTCACATAA+TGG | 0.433393 | 7_2:-81755277 | None:intergenic |
TGATGACCATAGCTGTTGAT+TGG | 0.433870 | 7_2:-81755219 | None:intergenic |
GTGCTTAATGTAAGGGAAAG+TGG | 0.434606 | 7_2:+81755345 | Msa1081830:three_prime_UTR |
GGTGGTGCTACTGCTGGAGG+AGG | 0.445055 | 7_2:-81755072 | None:intergenic |
CCAGCAGTAGCACCACCCTA+TGG | 0.447198 | 7_2:+81755078 | Msa1081830:CDS |
ATTGGATGAGAGGGTGGAGG+AGG | 0.450211 | 7_2:-81755201 | None:intergenic |
GCATGCTGCTGAGGAAGTAC+TGG | 0.452781 | 7_2:-81755012 | None:intergenic |
GATCACAAAGAAGGTCATAA+TGG | 0.457322 | 7_2:+81754802 | Msa1081830:CDS |
ACAGAACAGAAATTGATTCT+CGG | 0.466079 | 7_2:+81754518 | Msa1081830:CDS |
TTAATTAGTGCTTAATGTAA+GGG | 0.467475 | 7_2:+81755338 | Msa1081830:three_prime_UTR |
GGAGGCATAATAATTTCCTT+AGG | 0.468365 | 7_2:-81754991 | None:intergenic |
AGTACATATGTGGTGGATAT+GGG | 0.469995 | 7_2:-81755041 | None:intergenic |
ACGAAGAAAGCTTGTCTAAG+TGG | 0.471666 | 7_2:-81753446 | None:intergenic |
TTAGCATGCATAGGCATGAC+AGG | 0.475394 | 7_2:-81755159 | None:intergenic |
TATTATGAATAAGGAGATCA+AGG | 0.477611 | 7_2:+81754690 | Msa1081830:CDS |
TTGGTACGTAGCTAGCTTAG+TGG | 0.480383 | 7_2:-81753484 | None:intergenic |
TACTTGAGTGTTTCTAATCC+GGG | 0.491731 | 7_2:-81753562 | None:intergenic |
CATAATAATTTCCTTAGGAA+TGG | 0.491755 | 7_2:-81754986 | None:intergenic |
CTTAGTGGAGTGGAAAATAA+GGG | 0.493762 | 7_2:-81753469 | None:intergenic |
GGAACTTGTTGATCAGCAGC+TGG | 0.496704 | 7_2:-81753538 | None:intergenic |
CATTTGAAATGAAGTTTGGT+TGG | 0.501265 | 7_2:-81753503 | None:intergenic |
AGTTTGCTTGCTGGTATGGT+GGG | 0.503457 | 7_2:+81755602 | Msa1081830:three_prime_UTR |
TACTATAGTATACATGTACA+TGG | 0.505970 | 7_2:+81753377 | Msa1081830:five_prime_UTR |
CCATAGGGTGGTGCTACTGC+TGG | 0.507340 | 7_2:-81755078 | None:intergenic |
CGAAGAAAGCTTGTCTAAGT+GGG | 0.515764 | 7_2:-81753445 | None:intergenic |
TAGTTTGCTTGCTGGTATGG+TGG | 0.517121 | 7_2:+81755601 | Msa1081830:three_prime_UTR |
CAGGGAAATCAGTAGAACTT+TGG | 0.517951 | 7_2:+81754605 | Msa1081830:CDS |
GAAGATTCAGATCACAAAGA+AGG | 0.518960 | 7_2:+81754793 | Msa1081830:CDS |
GAGAGGGTGGAGGAGGTGGA+GGG | 0.528150 | 7_2:-81755194 | None:intergenic |
TCAAGAAGCTTTCAAGATCA+GGG | 0.538607 | 7_2:+81754587 | Msa1081830:CDS |
TAGGGTGGTGCTACTGCTGG+AGG | 0.544543 | 7_2:-81755075 | None:intergenic |
GTGGTGCTACTGCTGGAGGA+GGG | 0.547041 | 7_2:-81755071 | None:intergenic |
CAGCAGTAGCACCACCCTAT+GGG | 0.554674 | 7_2:+81755079 | Msa1081830:CDS |
TTGATTGGATGAGAGGGTGG+AGG | 0.558090 | 7_2:-81755204 | None:intergenic |
GATAATAACAATAAAAGTGA+GGG | 0.562957 | 7_2:+81754826 | Msa1081830:CDS |
TGTGTTATAGCTTAACCCAT+AGG | 0.565506 | 7_2:-81755094 | None:intergenic |
GTGTTATAGCTTAACCCATA+GGG | 0.565951 | 7_2:-81755093 | None:intergenic |
ATAGATGATGCAGGTGATGA+TGG | 0.566616 | 7_2:+81754766 | Msa1081830:CDS |
AACATCTGCATTAGAAGTTG+CGG | 0.568622 | 7_2:+81755514 | Msa1081830:three_prime_UTR |
AGAGTCAAGAAAATTCTTCA+GGG | 0.568811 | 7_2:+81753764 | Msa1081830:CDS |
AAAAGTGAATGCCATTCCTA+AGG | 0.569713 | 7_2:+81754975 | Msa1081830:CDS |
TTAACTCCAAATAATGGAGG+AGG | 0.576698 | 7_2:+81754904 | Msa1081830:CDS |
GTTGGTGAAAGTAGTCATGA+AGG | 0.580432 | 7_2:+81754739 | Msa1081830:CDS |
AAGCTTCTTGATGAGAGTCT+CGG | 0.581432 | 7_2:-81754575 | None:intergenic |
GGGTTATAAGCATGCTGCTG+AGG | 0.582921 | 7_2:-81755021 | None:intergenic |
GCTGATCAACAAGTTCCTCC+CGG | 0.583544 | 7_2:+81753544 | Msa1081830:CDS |
GCTTAATGTAAGGGAAAGTG+GGG | 0.583691 | 7_2:+81755347 | Msa1081830:three_prime_UTR |
TCTCATCCAATCAACAGCTA+TGG | 0.586584 | 7_2:+81755213 | Msa1081830:CDS |
AATGATCATGAAGAATATGA+AGG | 0.589711 | 7_2:+81755243 | Msa1081830:CDS |
TGATAATAACAATAAAAGTG+AGG | 0.591536 | 7_2:+81754825 | Msa1081830:CDS |
GATCATGAAGAATATGAAGG+TGG | 0.598780 | 7_2:+81755246 | Msa1081830:CDS |
CTGTTGATTGGATGAGAGGG+TGG | 0.603779 | 7_2:-81755207 | None:intergenic |
AATTGATTCTCGGCAGCACA+AGG | 0.604243 | 7_2:+81754528 | Msa1081830:CDS |
AATAACAATAAAAGTGAGGG+TGG | 0.610406 | 7_2:+81754829 | Msa1081830:CDS |
GGGTGTGGATAGTACATATG+TGG | 0.614125 | 7_2:-81755051 | None:intergenic |
TGCTGCTGAGGAAGTACTGG+AGG | 0.614651 | 7_2:-81755009 | None:intergenic |
CTAGAGTAATTAGCATGCAT+AGG | 0.625509 | 7_2:-81755168 | None:intergenic |
AAAGTCTTGATCCACTGCGA+CGG | 0.628481 | 7_2:+81753731 | Msa1081830:CDS |
AAGAACAGTACTGAACAAGT+TGG | 0.630407 | 7_2:+81754721 | Msa1081830:CDS |
TGTGGATAGTACATATGTGG+TGG | 0.633196 | 7_2:-81755048 | None:intergenic |
GAAGGTTGTATAGATGATGC+AGG | 0.636887 | 7_2:+81754757 | Msa1081830:CDS |
TAGCATGCATAGGCATGACA+GGG | 0.638724 | 7_2:-81755158 | None:intergenic |
ACGTAGCTAGCTTAGTGGAG+TGG | 0.638739 | 7_2:-81753479 | None:intergenic |
CTTTACACATAAGATAGAGA+AGG | 0.643549 | 7_2:-81755766 | None:intergenic |
ATAGCTGTTGATTGGATGAG+AGG | 0.644634 | 7_2:-81755211 | None:intergenic |
TAGCTGTTGATTGGATGAGA+GGG | 0.658334 | 7_2:-81755210 | None:intergenic |
TCATTAACTCCAAATAATGG+AGG | 0.678633 | 7_2:+81754901 | Msa1081830:CDS |
ACTATAGTATACATGTACAT+GGG | 0.681696 | 7_2:+81753378 | Msa1081830:five_prime_UTR |
TTATAGCTTAACCCATAGGG+TGG | 0.684519 | 7_2:-81755090 | None:intergenic |
GAAGAAAGCTTGTCTAAGTG+GGG | 0.685656 | 7_2:-81753444 | None:intergenic |
TTGAGTGTTTCTAATCCGGG+AGG | 0.702857 | 7_2:-81753559 | None:intergenic |
GGTTACAGTTACTGGCAACG+TGG | 0.704095 | 7_2:+81754549 | Msa1081830:CDS |
CTTAATGTAAGGGAAAGTGG+GGG | 0.705125 | 7_2:+81755348 | Msa1081830:three_prime_UTR |
TATGTGACAAAGCTACAATG+TGG | 0.705519 | 7_2:+81755281 | Msa1081830:exon |
GTGACAAAGCTACAATGTGG+AGG | 0.717223 | 7_2:+81755284 | Msa1081830:exon |
AGCATGCATAGGCATGACAG+GGG | 0.720799 | 7_2:-81755157 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATAATAAATGCTATAT+TGG | + | chr7_2:81753263-81753282 | Msa1081830:five_prime_UTR | 10.0% |
!! | TGTAATAGAAAAAAAAAATA+TGG | + | chr7_2:81755576-81755595 | Msa1081830:three_prime_UTR | 10.0% |
!! | TAATAGCTTATTAAACATAT+TGG | + | chr7_2:81754070-81754089 | Msa1081830:intron | 15.0% |
!! | AAAAAATCTTCAAAATCAAA+AGG | + | chr7_2:81754655-81754674 | Msa1081830:CDS | 15.0% |
!! | AACTGAAAATATTATGAATA+AGG | + | chr7_2:81754681-81754700 | Msa1081830:CDS | 15.0% |
!!! | TGTTAAAAAGTATAGTTTTT+GGG | + | chr7_2:81755679-81755698 | Msa1081830:three_prime_UTR | 15.0% |
!!! | TATATCATAGTTCTAAATTG+CGG | - | chr7_2:81753961-81753980 | None:intergenic | 20.0% |
!! | CTGATAAAATAAATACCATT+AGG | - | chr7_2:81754012-81754031 | None:intergenic | 20.0% |
!! | GTATATTTGATAAAGTCTAA+CGG | + | chr7_2:81754457-81754476 | Msa1081830:intron | 20.0% |
!! | TGATAATAACAATAAAAGTG+AGG | + | chr7_2:81754825-81754844 | Msa1081830:CDS | 20.0% |
!! | GATAATAACAATAAAAGTGA+GGG | + | chr7_2:81754826-81754845 | Msa1081830:CDS | 20.0% |
!! | AAGAAAAAGAAAAACAAAAG+TGG | + | chr7_2:81754871-81754890 | Msa1081830:CDS | 20.0% |
!! | TTAATTAGTGCTTAATGTAA+GGG | + | chr7_2:81755338-81755357 | Msa1081830:three_prime_UTR | 20.0% |
!! | AGATCTAGATTAAAAAAATG+TGG | + | chr7_2:81755538-81755557 | Msa1081830:three_prime_UTR | 20.0% |
!! | GATCTAGATTAAAAAAATGT+GGG | + | chr7_2:81755539-81755558 | Msa1081830:three_prime_UTR | 20.0% |
!! | ATCTAGATTAAAAAAATGTG+GGG | + | chr7_2:81755540-81755559 | Msa1081830:three_prime_UTR | 20.0% |
!! | TACAAAGAAGAAGAAAAAAA+AGG | - | chr7_2:81755653-81755672 | None:intergenic | 20.0% |
!!! | CAAAAACTATACTTTTTAAC+AGG | - | chr7_2:81755680-81755699 | None:intergenic | 20.0% |
!!! | CTGTTAAAAAGTATAGTTTT+TGG | + | chr7_2:81755678-81755697 | Msa1081830:three_prime_UTR | 20.0% |
! | TACTATAGTATACATGTACA+TGG | + | chr7_2:81753377-81753396 | Msa1081830:five_prime_UTR | 25.0% |
! | ACTATAGTATACATGTACAT+GGG | + | chr7_2:81753378-81753397 | Msa1081830:five_prime_UTR | 25.0% |
!! | ATATTTTTCTGAGTACCTAA+TGG | + | chr7_2:81753994-81754013 | Msa1081830:intron | 25.0% |
! | CATGTAATTAACTAAATTCC+AGG | - | chr7_2:81754143-81754162 | None:intergenic | 25.0% |
!!! | GATTTTTTATCTTTCTTCTC+AGG | - | chr7_2:81754643-81754662 | None:intergenic | 25.0% |
! | TATTATGAATAAGGAGATCA+AGG | + | chr7_2:81754690-81754709 | Msa1081830:CDS | 25.0% |
! | CATAATAATTTCCTTAGGAA+TGG | - | chr7_2:81754989-81755008 | None:intergenic | 25.0% |
! | AATGATCATGAAGAATATGA+AGG | + | chr7_2:81755243-81755262 | Msa1081830:CDS | 25.0% |
! | GTTAATTAGTGCTTAATGTA+AGG | + | chr7_2:81755337-81755356 | Msa1081830:three_prime_UTR | 25.0% |
!! | AAATCGTCTTTTTACAAACT+AGG | - | chr7_2:81755416-81755435 | None:intergenic | 25.0% |
!! | TAGTTTGTAAAAAGACGATT+TGG | + | chr7_2:81755415-81755434 | Msa1081830:three_prime_UTR | 25.0% |
!!! | TTTTTGGGTTTGCTATAAAA+AGG | + | chr7_2:81755694-81755713 | Msa1081830:three_prime_UTR | 25.0% |
! | GTTTTGCCAATGCTTTTAAA+GGG | - | chr7_2:81753413-81753432 | None:intergenic | 30.0% |
! | CATTTGAAATGAAGTTTGGT+TGG | - | chr7_2:81753506-81753525 | None:intergenic | 30.0% |
CAACCAAACTTCATTTCAAA+TGG | + | chr7_2:81753504-81753523 | Msa1081830:exon | 30.0% | |
! | ATACTTGAGTGTTTCTAATC+CGG | - | chr7_2:81753566-81753585 | None:intergenic | 30.0% |
ATTAGAAACACTCAAGTATC+AGG | + | chr7_2:81753567-81753586 | Msa1081830:CDS | 30.0% | |
AAGAGTCAAGAAAATTCTTC+AGG | + | chr7_2:81753763-81753782 | Msa1081830:CDS | 30.0% | |
AGAGTCAAGAAAATTCTTCA+GGG | + | chr7_2:81753764-81753783 | Msa1081830:CDS | 30.0% | |
AAAATTCTTCAGGGAATTGA+AGG | + | chr7_2:81753773-81753792 | Msa1081830:CDS | 30.0% | |
AATGAAGACAAATACATCTG+AGG | + | chr7_2:81753875-81753894 | Msa1081830:intron | 30.0% | |
CAATTATGGCTGCAATATAA+AGG | - | chr7_2:81753928-81753947 | None:intergenic | 30.0% | |
TTATATTGCAGCCATAATTG+CGG | + | chr7_2:81753928-81753947 | Msa1081830:intron | 30.0% | |
TTAGAAGACTAACACTTAAG+TGG | - | chr7_2:81754053-81754072 | None:intergenic | 30.0% | |
ATTGACATGATCAATAAACC+TGG | + | chr7_2:81754122-81754141 | Msa1081830:intron | 30.0% | |
AATATACGTAAGAGTCATAC+AGG | - | chr7_2:81754444-81754463 | None:intergenic | 30.0% | |
TATATCCGTGACAATCATAA+CGG | - | chr7_2:81754489-81754508 | None:intergenic | 30.0% | |
TATGATTGTCACGGATATAT+AGG | + | chr7_2:81754490-81754509 | Msa1081830:intron | 30.0% | |
ATGATTGTCACGGATATATA+GGG | + | chr7_2:81754491-81754510 | Msa1081830:intron | 30.0% | |
! | ACAGAACAGAAATTGATTCT+CGG | + | chr7_2:81754518-81754537 | Msa1081830:CDS | 30.0% |
! | TTTTTATCTTTCTTCTCAGG+AGG | - | chr7_2:81754640-81754659 | None:intergenic | 30.0% |
AATAACAATAAAAGTGAGGG+TGG | + | chr7_2:81754829-81754848 | Msa1081830:CDS | 30.0% | |
GCTTCATTAACTCCAAATAA+TGG | + | chr7_2:81754898-81754917 | Msa1081830:CDS | 30.0% | |
TCATTAACTCCAAATAATGG+AGG | + | chr7_2:81754901-81754920 | Msa1081830:CDS | 30.0% | |
!!! | TTCACTTTTTCAAGTACTTG+TGG | - | chr7_2:81754964-81754983 | None:intergenic | 30.0% |
AGCACTTCTTCTTATTATGT+TGG | + | chr7_2:81755132-81755151 | Msa1081830:CDS | 30.0% | |
!! | ATTGTAGCTTTGTCACATAA+TGG | - | chr7_2:81755280-81755299 | None:intergenic | 30.0% |
ATTAAAAAAATGTGGGGACA+AGG | + | chr7_2:81755546-81755565 | Msa1081830:three_prime_UTR | 30.0% | |
CTTTACACATAAGATAGAGA+AGG | - | chr7_2:81755769-81755788 | None:intergenic | 30.0% | |
! | GGTTTTGCCAATGCTTTTAA+AGG | - | chr7_2:81753414-81753433 | None:intergenic | 35.0% |
CTTAGTGGAGTGGAAAATAA+GGG | - | chr7_2:81753472-81753491 | None:intergenic | 35.0% | |
! | CAGCCATTTGAAATGAAGTT+TGG | - | chr7_2:81753510-81753529 | None:intergenic | 35.0% |
! | TACTTGAGTGTTTCTAATCC+GGG | - | chr7_2:81753565-81753584 | None:intergenic | 35.0% |
!! | TTAGTAGACTTGTTAGAGCA+AGG | - | chr7_2:81753620-81753639 | None:intergenic | 35.0% |
ACCAAAGAATAGATTCAGGA+GGG | - | chr7_2:81753648-81753667 | None:intergenic | 35.0% | |
GTTGACCAAAGAATAGATTC+AGG | - | chr7_2:81753652-81753671 | None:intergenic | 35.0% | |
TTGGTTAAACAGTAGTGTCT+TGG | + | chr7_2:81754089-81754108 | Msa1081830:intron | 35.0% | |
ATCCACTTCAGACTTTATCA+TGG | + | chr7_2:81754198-81754217 | Msa1081830:intron | 35.0% | |
ATCCATGATAAAGTCTGAAG+TGG | - | chr7_2:81754203-81754222 | None:intergenic | 35.0% | |
TGATTGTCACGGATATATAG+GGG | + | chr7_2:81754492-81754511 | Msa1081830:intron | 35.0% | |
ATCAAGAAGCTTTCAAGATC+AGG | + | chr7_2:81754586-81754605 | Msa1081830:CDS | 35.0% | |
TCAAGAAGCTTTCAAGATCA+GGG | + | chr7_2:81754587-81754606 | Msa1081830:CDS | 35.0% | |
! | AAGAACAGTACTGAACAAGT+TGG | + | chr7_2:81754721-81754740 | Msa1081830:CDS | 35.0% |
GAAGATTCAGATCACAAAGA+AGG | + | chr7_2:81754793-81754812 | Msa1081830:CDS | 35.0% | |
GATCACAAAGAAGGTCATAA+TGG | + | chr7_2:81754802-81754821 | Msa1081830:CDS | 35.0% | |
! | TTAACTCCAAATAATGGAGG+AGG | + | chr7_2:81754904-81754923 | Msa1081830:CDS | 35.0% |
! | TCTTTTCCTCCTCCATTATT+TGG | - | chr7_2:81754913-81754932 | None:intergenic | 35.0% |
AAAAGTGAATGCCATTCCTA+AGG | + | chr7_2:81754975-81754994 | Msa1081830:CDS | 35.0% | |
! | GGAGGCATAATAATTTCCTT+AGG | - | chr7_2:81754994-81755013 | None:intergenic | 35.0% |
!! | AGTACATATGTGGTGGATAT+GGG | - | chr7_2:81755044-81755063 | None:intergenic | 35.0% |
!! | TAGTACATATGTGGTGGATA+TGG | - | chr7_2:81755045-81755064 | None:intergenic | 35.0% |
GTGTTATAGCTTAACCCATA+GGG | - | chr7_2:81755096-81755115 | None:intergenic | 35.0% | |
TGTGTTATAGCTTAACCCAT+AGG | - | chr7_2:81755097-81755116 | None:intergenic | 35.0% | |
!! | TAAGAAGAAGTGCTAGAAAC+AGG | - | chr7_2:81755126-81755145 | None:intergenic | 35.0% |
CTAGAGTAATTAGCATGCAT+AGG | - | chr7_2:81755171-81755190 | None:intergenic | 35.0% | |
GATCATGAAGAATATGAAGG+TGG | + | chr7_2:81755246-81755265 | Msa1081830:CDS | 35.0% | |
TATGTGACAAAGCTACAATG+TGG | + | chr7_2:81755281-81755300 | Msa1081830:exon | 35.0% | |
TGCTTAATGTAAGGGAAAGT+GGG | + | chr7_2:81755346-81755365 | Msa1081830:three_prime_UTR | 35.0% | |
TAATGCAGATGTTGCAAAGT+TGG | - | chr7_2:81755507-81755526 | None:intergenic | 35.0% | |
AACATCTGCATTAGAAGTTG+CGG | + | chr7_2:81755514-81755533 | Msa1081830:three_prime_UTR | 35.0% | |
!! | CAATGCTTTTAAAGGGTGTG+AGG | - | chr7_2:81753406-81753425 | None:intergenic | 40.0% |
! | CTCACACCCTTTAAAAGCAT+TGG | + | chr7_2:81753404-81753423 | Msa1081830:five_prime_UTR | 40.0% |
GAAGAAAGCTTGTCTAAGTG+GGG | - | chr7_2:81753447-81753466 | None:intergenic | 40.0% | |
CGAAGAAAGCTTGTCTAAGT+GGG | - | chr7_2:81753448-81753467 | None:intergenic | 40.0% | |
ACGAAGAAAGCTTGTCTAAG+TGG | - | chr7_2:81753449-81753468 | None:intergenic | 40.0% | |
GCTTAGTGGAGTGGAAAATA+AGG | - | chr7_2:81753473-81753492 | None:intergenic | 40.0% | |
TCCCTCCTGAATCTATTCTT+TGG | + | chr7_2:81753644-81753663 | Msa1081830:intron | 40.0% | |
GACCAAAGAATAGATTCAGG+AGG | - | chr7_2:81753649-81753668 | None:intergenic | 40.0% | |
ATGTGATCATTCTACAGACG+TGG | + | chr7_2:81753702-81753721 | Msa1081830:intron | 40.0% | |
TGTGATCATTCTACAGACGT+GGG | + | chr7_2:81753703-81753722 | Msa1081830:intron | 40.0% | |
TCAAGTTTGCAACATAACCG+CGG | - | chr7_2:81753844-81753863 | None:intergenic | 40.0% | |
GAAGACAAATACATCTGAGG+CGG | + | chr7_2:81753878-81753897 | Msa1081830:intron | 40.0% | |
GTTAAACAGTAGTGTCTTGG+CGG | + | chr7_2:81754092-81754111 | Msa1081830:intron | 40.0% | |
TTAAACAGTAGTGTCTTGGC+GGG | + | chr7_2:81754093-81754112 | Msa1081830:intron | 40.0% | |
TCCAACCGTTATGATTGTCA+CGG | + | chr7_2:81754481-81754500 | Msa1081830:intron | 40.0% | |
AAGCTTCTTGATGAGAGTCT+CGG | - | chr7_2:81754578-81754597 | None:intergenic | 40.0% | |
CAGGGAAATCAGTAGAACTT+TGG | + | chr7_2:81754605-81754624 | Msa1081830:CDS | 40.0% | |
! | GTTGGTGAAAGTAGTCATGA+AGG | + | chr7_2:81754739-81754758 | Msa1081830:CDS | 40.0% |
GAAGGTTGTATAGATGATGC+AGG | + | chr7_2:81754757-81754776 | Msa1081830:CDS | 40.0% | |
ATAGATGATGCAGGTGATGA+TGG | + | chr7_2:81754766-81754785 | Msa1081830:CDS | 40.0% | |
TGTGGATAGTACATATGTGG+TGG | - | chr7_2:81755051-81755070 | None:intergenic | 40.0% | |
TTATAGCTTAACCCATAGGG+TGG | - | chr7_2:81755093-81755112 | None:intergenic | 40.0% | |
! | TAGCTGTTGATTGGATGAGA+GGG | - | chr7_2:81755213-81755232 | None:intergenic | 40.0% |
! | ATAGCTGTTGATTGGATGAG+AGG | - | chr7_2:81755214-81755233 | None:intergenic | 40.0% |
TCTCATCCAATCAACAGCTA+TGG | + | chr7_2:81755213-81755232 | Msa1081830:CDS | 40.0% | |
TGATGACCATAGCTGTTGAT+TGG | - | chr7_2:81755222-81755241 | None:intergenic | 40.0% | |
GTGCTTAATGTAAGGGAAAG+TGG | + | chr7_2:81755345-81755364 | Msa1081830:three_prime_UTR | 40.0% | |
GCTTAATGTAAGGGAAAGTG+GGG | + | chr7_2:81755347-81755366 | Msa1081830:three_prime_UTR | 40.0% | |
CTTAATGTAAGGGAAAGTGG+GGG | + | chr7_2:81755348-81755367 | Msa1081830:three_prime_UTR | 40.0% | |
!! | ATATGGTGTAGTTTGCTTGC+TGG | + | chr7_2:81755593-81755612 | Msa1081830:three_prime_UTR | 40.0% |
! | GCAGAGCATTACAATGCTAT+TGG | - | chr7_2:81755720-81755739 | None:intergenic | 40.0% |
TCTAAGTGGGGTGTGTTTGT+TGG | - | chr7_2:81753435-81753454 | None:intergenic | 45.0% | |
! | TTGGTACGTAGCTAGCTTAG+TGG | - | chr7_2:81753487-81753506 | None:intergenic | 45.0% |
! | TGTTGATCAGCAGCTGGTTT+GGG | - | chr7_2:81753535-81753554 | None:intergenic | 45.0% |
TTGTTGATCAGCAGCTGGTT+TGG | - | chr7_2:81753536-81753555 | None:intergenic | 45.0% | |
! | TTGAGTGTTTCTAATCCGGG+AGG | - | chr7_2:81753562-81753581 | None:intergenic | 45.0% |
AAAGTCTTGATCCACTGCGA+CGG | + | chr7_2:81753731-81753750 | Msa1081830:CDS | 45.0% | |
ATAGACACACACACACACCA+TGG | + | chr7_2:81753805-81753824 | Msa1081830:intron | 45.0% | |
! | ATCTGAGGCGGCTGTAATTT+CGG | + | chr7_2:81753890-81753909 | Msa1081830:intron | 45.0% |
TCCGTGACAATCATAACGGT+TGG | - | chr7_2:81754485-81754504 | None:intergenic | 45.0% | |
! | AATTGATTCTCGGCAGCACA+AGG | + | chr7_2:81754528-81754547 | Msa1081830:CDS | 45.0% |
CAGCACAAGGTTACAGTTAC+TGG | + | chr7_2:81754541-81754560 | Msa1081830:CDS | 45.0% | |
! | TTCTTCTCAGGAGGCTTTTC+TGG | - | chr7_2:81754631-81754650 | None:intergenic | 45.0% |
GGGTGTGGATAGTACATATG+TGG | - | chr7_2:81755054-81755073 | None:intergenic | 45.0% | |
TAGCATGCATAGGCATGACA+GGG | - | chr7_2:81755161-81755180 | None:intergenic | 45.0% | |
TTAGCATGCATAGGCATGAC+AGG | - | chr7_2:81755162-81755181 | None:intergenic | 45.0% | |
GTGACAAAGCTACAATGTGG+AGG | + | chr7_2:81755284-81755303 | Msa1081830:exon | 45.0% | |
!! | GTGTAGTTTGCTTGCTGGTA+TGG | + | chr7_2:81755598-81755617 | Msa1081830:three_prime_UTR | 45.0% |
!! | TAGTTTGCTTGCTGGTATGG+TGG | + | chr7_2:81755601-81755620 | Msa1081830:three_prime_UTR | 45.0% |
! | AGTTTGCTTGCTGGTATGGT+GGG | + | chr7_2:81755602-81755621 | Msa1081830:three_prime_UTR | 45.0% |
! | ACGTAGCTAGCTTAGTGGAG+TGG | - | chr7_2:81753482-81753501 | None:intergenic | 50.0% |
!! | GGAACTTGTTGATCAGCAGC+TGG | - | chr7_2:81753541-81753560 | None:intergenic | 50.0% |
GCTGATCAACAAGTTCCTCC+CGG | + | chr7_2:81753544-81753563 | Msa1081830:CDS | 50.0% | |
!! | ATGGTTCTGAATTGCGACCG+CGG | + | chr7_2:81753824-81753843 | Msa1081830:intron | 50.0% |
! | GCGGACTACAACCGCAATTA+TGG | - | chr7_2:81753942-81753961 | None:intergenic | 50.0% |
GGTTACAGTTACTGGCAACG+TGG | + | chr7_2:81754549-81754568 | Msa1081830:CDS | 50.0% | |
GGGTTATAAGCATGCTGCTG+AGG | - | chr7_2:81755024-81755043 | None:intergenic | 50.0% | |
AGCATGCATAGGCATGACAG+GGG | - | chr7_2:81755160-81755179 | None:intergenic | 50.0% | |
TTGATTGGATGAGAGGGTGG+AGG | - | chr7_2:81755207-81755226 | None:intergenic | 50.0% | |
! | CTGTTGATTGGATGAGAGGG+TGG | - | chr7_2:81755210-81755229 | None:intergenic | 50.0% |
! | TTTTTGTGCAGCCGTCGCAG+TGG | - | chr7_2:81753745-81753764 | None:intergenic | 55.0% |
GCGGTCGCAATTCAGAACCA+TGG | - | chr7_2:81753825-81753844 | None:intergenic | 55.0% | |
! | AGTAGTGTCTTGGCGGGTCT+TGG | + | chr7_2:81754099-81754118 | Msa1081830:intron | 55.0% |
!! | TGCTGCTGAGGAAGTACTGG+AGG | - | chr7_2:81755012-81755031 | None:intergenic | 55.0% |
! | GCATGCTGCTGAGGAAGTAC+TGG | - | chr7_2:81755015-81755034 | None:intergenic | 55.0% |
CAGCAGTAGCACCACCCTAT+GGG | + | chr7_2:81755079-81755098 | Msa1081830:CDS | 55.0% | |
ATTGGATGAGAGGGTGGAGG+AGG | - | chr7_2:81755204-81755223 | None:intergenic | 55.0% | |
!! | GTGGTGCTACTGCTGGAGGA+GGG | - | chr7_2:81755074-81755093 | None:intergenic | 60.0% |
!! | TAGGGTGGTGCTACTGCTGG+AGG | - | chr7_2:81755078-81755097 | None:intergenic | 60.0% |
!! | CCATAGGGTGGTGCTACTGC+TGG | - | chr7_2:81755081-81755100 | None:intergenic | 60.0% |
CCAGCAGTAGCACCACCCTA+TGG | + | chr7_2:81755078-81755097 | Msa1081830:CDS | 60.0% | |
GCTACTGCTGGAGGAGGGTG+TGG | - | chr7_2:81755069-81755088 | None:intergenic | 65.0% | |
!! | GGTGGTGCTACTGCTGGAGG+AGG | - | chr7_2:81755075-81755094 | None:intergenic | 65.0% |
GAGAGGGTGGAGGAGGTGGA+GGG | - | chr7_2:81755197-81755216 | None:intergenic | 65.0% | |
TGAGAGGGTGGAGGAGGTGG+AGG | - | chr7_2:81755198-81755217 | None:intergenic | 65.0% | |
GGATGAGAGGGTGGAGGAGG+TGG | - | chr7_2:81755201-81755220 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 81753261 | 81755798 | 81753261 | ID=Msa1081830;Name=Msa1081830 |
chr7_2 | mRNA | 81753261 | 81755798 | 81753261 | ID=Msa1081830-mRNA-1;Parent=Msa1081830;Name=Msa1081830-mRNA-1;_AED=0.13;_eAED=0.13;_QI=262|1|1|1|1|1|3|511|305 |
chr7_2 | exon | 81753261 | 81753588 | 81753261 | ID=Msa1081830-mRNA-1:exon:20998;Parent=Msa1081830-mRNA-1 |
chr7_2 | exon | 81753719 | 81753794 | 81753719 | ID=Msa1081830-mRNA-1:exon:20999;Parent=Msa1081830-mRNA-1 |
chr7_2 | exon | 81754512 | 81755798 | 81754512 | ID=Msa1081830-mRNA-1:exon:21000;Parent=Msa1081830-mRNA-1 |
chr7_2 | five_prime_UTR | 81753261 | 81753522 | 81753261 | ID=Msa1081830-mRNA-1:five_prime_utr;Parent=Msa1081830-mRNA-1 |
chr7_2 | CDS | 81753523 | 81753588 | 81753523 | ID=Msa1081830-mRNA-1:cds;Parent=Msa1081830-mRNA-1 |
chr7_2 | CDS | 81753719 | 81753794 | 81753719 | ID=Msa1081830-mRNA-1:cds;Parent=Msa1081830-mRNA-1 |
chr7_2 | CDS | 81754512 | 81755287 | 81754512 | ID=Msa1081830-mRNA-1:cds;Parent=Msa1081830-mRNA-1 |
chr7_2 | three_prime_UTR | 81755288 | 81755798 | 81755288 | ID=Msa1081830-mRNA-1:three_prime_utr;Parent=Msa1081830-mRNA-1 |
Gene Sequence |
Protein sequence |