AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081830 MtrunA17_Chr7g0269081 96.732 306 9 1 1 305 1 306 0.0 600
Msa1081830 MtrunA17_Chr4g0067291 34.906 318 146 15 19 305 71 358 2.07e-33 125
Msa1081830 MtrunA17_Chr1g0208301 67.606 71 23 0 16 86 7 77 3.00e-26 106
Msa1081830 MtrunA17_Chr2g0287751 67.143 70 23 0 17 86 5 74 2.16e-24 102
Msa1081830 MtrunA17_Chr0c22g0493881 65.714 70 24 0 17 86 5 74 2.46e-23 98.6
Msa1081830 MtrunA17_Chr4g0065651 65.714 70 24 0 17 86 5 74 2.70e-23 99.8
Msa1081830 MtrunA17_Chr2g0296001 44.615 130 64 1 2 131 61 182 1.33e-22 96.3
Msa1081830 MtrunA17_Chr4g0065621 65.714 70 24 0 17 86 5 74 2.68e-22 95.9
Msa1081830 MtrunA17_Chr7g0272571 46.721 122 56 2 22 141 33 147 8.70e-22 94.0
Msa1081830 MtrunA17_Chr1g0192131 55.056 89 32 2 1 88 1 82 8.72e-22 94.4
Msa1081830 MtrunA17_Chr1g0191671 57.143 70 30 0 17 86 5 74 1.24e-19 89.0
Msa1081830 MtrunA17_Chr3g0111541 48.611 72 37 0 17 88 7 78 6.90e-16 75.1
Msa1081830 MtrunA17_Chr2g0287741 61.905 63 24 0 24 86 17 79 2.83e-15 76.3
Msa1081830 MtrunA17_Chr1g0160201 43.478 69 39 0 22 90 25 93 1.13e-14 70.1
Msa1081830 MtrunA17_Chr4g0036931 44.444 72 39 1 20 90 26 97 1.32e-14 70.1
Msa1081830 MtrunA17_Chr3g0124411 47.887 71 37 0 20 90 28 98 1.79e-14 69.7
Msa1081830 MtrunA17_Chr8g0382721 47.692 65 34 0 26 90 33 97 1.49e-13 67.0
Msa1081830 MtrunA17_Chr5g0407821 42.424 66 38 0 22 87 23 88 2.05e-13 66.6
Msa1081830 MtrunA17_Chr7g0218981 40.000 70 42 0 19 88 1 70 3.47e-13 65.5
Msa1081830 MtrunA17_Chr3g0115421 40.000 65 39 0 26 90 30 94 2.43e-12 63.5
Msa1081830 MtrunA17_Chr1g0198341 41.892 74 42 1 22 94 4 77 2.96e-12 61.6
Msa1081830 MtrunA17_Chr3g0145621 37.500 72 44 1 20 90 24 95 4.56e-12 63.2
Msa1081830 MtrunA17_Chr5g0405811 35.955 89 47 2 20 98 27 115 4.70e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081830 AT3G06130.2 65.714 70 24 0 17 86 5 74 5.02e-24 100
Msa1081830 AT5G27690.1 59.155 71 29 0 17 87 25 95 5.33e-24 100
Msa1081830 AT3G06130.1 65.714 70 24 0 17 86 5 74 6.67e-24 101
Msa1081830 AT5G19090.2 64.286 70 25 0 17 86 5 74 7.31e-23 98.6
Msa1081830 AT5G19090.3 64.286 70 25 0 17 86 5 74 7.31e-23 98.6
Msa1081830 AT5G19090.5 64.286 70 25 0 17 86 5 74 1.13e-22 98.6
Msa1081830 AT5G19090.4 64.286 70 25 0 17 86 5 74 1.13e-22 98.6
Msa1081830 AT5G19090.1 64.286 70 25 0 17 86 5 74 1.13e-22 98.6
Msa1081830 AT1G23000.1 45.455 99 46 1 16 106 7 105 2.99e-21 92.8
Msa1081830 AT1G23000.2 45.455 99 46 1 16 106 67 165 6.31e-21 92.8
Msa1081830 AT1G56210.1 54.286 70 32 0 21 90 39 108 7.65e-20 89.0
Msa1081830 AT3G05220.1 55.714 70 31 0 17 86 5 74 2.06e-18 85.9
Msa1081830 AT5G37860.1 48.611 72 37 0 22 93 10 81 1.79e-15 75.1
Msa1081830 AT1G71050.1 42.029 69 40 0 22 90 28 96 2.16e-13 67.0
Msa1081830 AT3G56240.3 43.939 66 37 0 22 87 3 68 3.47e-12 62.8
Msa1081830 AT3G56240.1 43.939 66 37 0 22 87 3 68 3.47e-12 62.8
Msa1081830 AT4G38580.1 40.278 72 42 1 20 90 24 95 4.76e-12 63.5
Msa1081830 AT4G38580.2 40.278 72 42 1 20 90 24 95 4.76e-12 63.5
Msa1081830 AT1G06330.1 45.902 61 33 0 26 86 6 66 4.84e-12 63.2
Msa1081830 AT3G56891.1 43.548 62 35 0 26 87 20 81 1.10e-11 62.8
Msa1081830 AT3G56891.2 43.103 58 33 0 30 87 1 58 1.53e-11 61.6
Msa1081830 AT4G08570.1 38.889 72 43 1 20 90 24 95 2.31e-11 61.2
Msa1081830 AT1G22990.1 41.429 70 40 1 22 90 29 98 2.45e-11 61.2
Msa1081830 AT5G66110.3 37.838 74 45 1 20 92 17 90 2.98e-11 60.8
Msa1081830 AT5G66110.1 37.838 74 45 1 20 92 17 90 2.98e-11 60.8
Msa1081830 AT1G66240.1 38.462 65 40 0 22 86 33 97 4.19e-11 59.3
Msa1081830 AT1G22990.2 40.299 67 39 1 25 90 27 93 4.46e-11 60.5

Find 103 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAGGGTGGAGGAGGTGG+AGG 0.275287 7_2:-81755195 None:intergenic
GCTTCATTAACTCCAAATAA+TGG 0.285010 7_2:+81754898 Msa1081830:CDS
GCTTAGTGGAGTGGAAAATA+AGG 0.302835 7_2:-81753470 None:intergenic
CAGCACAAGGTTACAGTTAC+TGG 0.314426 7_2:+81754541 Msa1081830:CDS
AAGAGTCAAGAAAATTCTTC+AGG 0.319616 7_2:+81753763 Msa1081830:CDS
TAGTACATATGTGGTGGATA+TGG 0.331565 7_2:-81755042 None:intergenic
GTTAATTAGTGCTTAATGTA+AGG 0.337945 7_2:+81755337 Msa1081830:three_prime_UTR
AACTGAAAATATTATGAATA+AGG 0.342413 7_2:+81754681 Msa1081830:CDS
TGTTGATCAGCAGCTGGTTT+GGG 0.352102 7_2:-81753532 None:intergenic
ATTAGAAACACTCAAGTATC+AGG 0.357551 7_2:+81753567 Msa1081830:CDS
CAGCCATTTGAAATGAAGTT+TGG 0.358581 7_2:-81753507 None:intergenic
ATCAAGAAGCTTTCAAGATC+AGG 0.368275 7_2:+81754586 Msa1081830:CDS
TTGTTGATCAGCAGCTGGTT+TGG 0.374527 7_2:-81753533 None:intergenic
GGATGAGAGGGTGGAGGAGG+TGG 0.374539 7_2:-81755198 None:intergenic
ATACTTGAGTGTTTCTAATC+CGG 0.381184 7_2:-81753563 None:intergenic
GCAGAGCATTACAATGCTAT+TGG 0.387344 7_2:-81755717 None:intergenic
AGCACTTCTTCTTATTATGT+TGG 0.397233 7_2:+81755132 Msa1081830:CDS
TAATGCAGATGTTGCAAAGT+TGG 0.403647 7_2:-81755504 None:intergenic
TCTAAGTGGGGTGTGTTTGT+TGG 0.404477 7_2:-81753432 None:intergenic
CAACCAAACTTCATTTCAAA+TGG 0.404986 7_2:+81753504 Msa1081830:exon
GTGTAGTTTGCTTGCTGGTA+TGG 0.419290 7_2:+81755598 Msa1081830:three_prime_UTR
TGCTTAATGTAAGGGAAAGT+GGG 0.420370 7_2:+81755346 Msa1081830:three_prime_UTR
GCTACTGCTGGAGGAGGGTG+TGG 0.422467 7_2:-81755066 None:intergenic
TAAGAAGAAGTGCTAGAAAC+AGG 0.428358 7_2:-81755123 None:intergenic
ATATGGTGTAGTTTGCTTGC+TGG 0.428624 7_2:+81755593 Msa1081830:three_prime_UTR
CTCACACCCTTTAAAAGCAT+TGG 0.430712 7_2:+81753404 Msa1081830:five_prime_UTR
AAAATTCTTCAGGGAATTGA+AGG 0.432486 7_2:+81753773 Msa1081830:CDS
ATTGTAGCTTTGTCACATAA+TGG 0.433393 7_2:-81755277 None:intergenic
TGATGACCATAGCTGTTGAT+TGG 0.433870 7_2:-81755219 None:intergenic
GTGCTTAATGTAAGGGAAAG+TGG 0.434606 7_2:+81755345 Msa1081830:three_prime_UTR
GGTGGTGCTACTGCTGGAGG+AGG 0.445055 7_2:-81755072 None:intergenic
CCAGCAGTAGCACCACCCTA+TGG 0.447198 7_2:+81755078 Msa1081830:CDS
ATTGGATGAGAGGGTGGAGG+AGG 0.450211 7_2:-81755201 None:intergenic
GCATGCTGCTGAGGAAGTAC+TGG 0.452781 7_2:-81755012 None:intergenic
GATCACAAAGAAGGTCATAA+TGG 0.457322 7_2:+81754802 Msa1081830:CDS
ACAGAACAGAAATTGATTCT+CGG 0.466079 7_2:+81754518 Msa1081830:CDS
TTAATTAGTGCTTAATGTAA+GGG 0.467475 7_2:+81755338 Msa1081830:three_prime_UTR
GGAGGCATAATAATTTCCTT+AGG 0.468365 7_2:-81754991 None:intergenic
AGTACATATGTGGTGGATAT+GGG 0.469995 7_2:-81755041 None:intergenic
ACGAAGAAAGCTTGTCTAAG+TGG 0.471666 7_2:-81753446 None:intergenic
TTAGCATGCATAGGCATGAC+AGG 0.475394 7_2:-81755159 None:intergenic
TATTATGAATAAGGAGATCA+AGG 0.477611 7_2:+81754690 Msa1081830:CDS
TTGGTACGTAGCTAGCTTAG+TGG 0.480383 7_2:-81753484 None:intergenic
TACTTGAGTGTTTCTAATCC+GGG 0.491731 7_2:-81753562 None:intergenic
CATAATAATTTCCTTAGGAA+TGG 0.491755 7_2:-81754986 None:intergenic
CTTAGTGGAGTGGAAAATAA+GGG 0.493762 7_2:-81753469 None:intergenic
GGAACTTGTTGATCAGCAGC+TGG 0.496704 7_2:-81753538 None:intergenic
CATTTGAAATGAAGTTTGGT+TGG 0.501265 7_2:-81753503 None:intergenic
AGTTTGCTTGCTGGTATGGT+GGG 0.503457 7_2:+81755602 Msa1081830:three_prime_UTR
TACTATAGTATACATGTACA+TGG 0.505970 7_2:+81753377 Msa1081830:five_prime_UTR
CCATAGGGTGGTGCTACTGC+TGG 0.507340 7_2:-81755078 None:intergenic
CGAAGAAAGCTTGTCTAAGT+GGG 0.515764 7_2:-81753445 None:intergenic
TAGTTTGCTTGCTGGTATGG+TGG 0.517121 7_2:+81755601 Msa1081830:three_prime_UTR
CAGGGAAATCAGTAGAACTT+TGG 0.517951 7_2:+81754605 Msa1081830:CDS
GAAGATTCAGATCACAAAGA+AGG 0.518960 7_2:+81754793 Msa1081830:CDS
GAGAGGGTGGAGGAGGTGGA+GGG 0.528150 7_2:-81755194 None:intergenic
TCAAGAAGCTTTCAAGATCA+GGG 0.538607 7_2:+81754587 Msa1081830:CDS
TAGGGTGGTGCTACTGCTGG+AGG 0.544543 7_2:-81755075 None:intergenic
GTGGTGCTACTGCTGGAGGA+GGG 0.547041 7_2:-81755071 None:intergenic
CAGCAGTAGCACCACCCTAT+GGG 0.554674 7_2:+81755079 Msa1081830:CDS
TTGATTGGATGAGAGGGTGG+AGG 0.558090 7_2:-81755204 None:intergenic
GATAATAACAATAAAAGTGA+GGG 0.562957 7_2:+81754826 Msa1081830:CDS
TGTGTTATAGCTTAACCCAT+AGG 0.565506 7_2:-81755094 None:intergenic
GTGTTATAGCTTAACCCATA+GGG 0.565951 7_2:-81755093 None:intergenic
ATAGATGATGCAGGTGATGA+TGG 0.566616 7_2:+81754766 Msa1081830:CDS
AACATCTGCATTAGAAGTTG+CGG 0.568622 7_2:+81755514 Msa1081830:three_prime_UTR
AGAGTCAAGAAAATTCTTCA+GGG 0.568811 7_2:+81753764 Msa1081830:CDS
AAAAGTGAATGCCATTCCTA+AGG 0.569713 7_2:+81754975 Msa1081830:CDS
TTAACTCCAAATAATGGAGG+AGG 0.576698 7_2:+81754904 Msa1081830:CDS
GTTGGTGAAAGTAGTCATGA+AGG 0.580432 7_2:+81754739 Msa1081830:CDS
AAGCTTCTTGATGAGAGTCT+CGG 0.581432 7_2:-81754575 None:intergenic
GGGTTATAAGCATGCTGCTG+AGG 0.582921 7_2:-81755021 None:intergenic
GCTGATCAACAAGTTCCTCC+CGG 0.583544 7_2:+81753544 Msa1081830:CDS
GCTTAATGTAAGGGAAAGTG+GGG 0.583691 7_2:+81755347 Msa1081830:three_prime_UTR
TCTCATCCAATCAACAGCTA+TGG 0.586584 7_2:+81755213 Msa1081830:CDS
AATGATCATGAAGAATATGA+AGG 0.589711 7_2:+81755243 Msa1081830:CDS
TGATAATAACAATAAAAGTG+AGG 0.591536 7_2:+81754825 Msa1081830:CDS
GATCATGAAGAATATGAAGG+TGG 0.598780 7_2:+81755246 Msa1081830:CDS
CTGTTGATTGGATGAGAGGG+TGG 0.603779 7_2:-81755207 None:intergenic
AATTGATTCTCGGCAGCACA+AGG 0.604243 7_2:+81754528 Msa1081830:CDS
AATAACAATAAAAGTGAGGG+TGG 0.610406 7_2:+81754829 Msa1081830:CDS
GGGTGTGGATAGTACATATG+TGG 0.614125 7_2:-81755051 None:intergenic
TGCTGCTGAGGAAGTACTGG+AGG 0.614651 7_2:-81755009 None:intergenic
CTAGAGTAATTAGCATGCAT+AGG 0.625509 7_2:-81755168 None:intergenic
AAAGTCTTGATCCACTGCGA+CGG 0.628481 7_2:+81753731 Msa1081830:CDS
AAGAACAGTACTGAACAAGT+TGG 0.630407 7_2:+81754721 Msa1081830:CDS
TGTGGATAGTACATATGTGG+TGG 0.633196 7_2:-81755048 None:intergenic
GAAGGTTGTATAGATGATGC+AGG 0.636887 7_2:+81754757 Msa1081830:CDS
TAGCATGCATAGGCATGACA+GGG 0.638724 7_2:-81755158 None:intergenic
ACGTAGCTAGCTTAGTGGAG+TGG 0.638739 7_2:-81753479 None:intergenic
CTTTACACATAAGATAGAGA+AGG 0.643549 7_2:-81755766 None:intergenic
ATAGCTGTTGATTGGATGAG+AGG 0.644634 7_2:-81755211 None:intergenic
TAGCTGTTGATTGGATGAGA+GGG 0.658334 7_2:-81755210 None:intergenic
TCATTAACTCCAAATAATGG+AGG 0.678633 7_2:+81754901 Msa1081830:CDS
ACTATAGTATACATGTACAT+GGG 0.681696 7_2:+81753378 Msa1081830:five_prime_UTR
TTATAGCTTAACCCATAGGG+TGG 0.684519 7_2:-81755090 None:intergenic
GAAGAAAGCTTGTCTAAGTG+GGG 0.685656 7_2:-81753444 None:intergenic
TTGAGTGTTTCTAATCCGGG+AGG 0.702857 7_2:-81753559 None:intergenic
GGTTACAGTTACTGGCAACG+TGG 0.704095 7_2:+81754549 Msa1081830:CDS
CTTAATGTAAGGGAAAGTGG+GGG 0.705125 7_2:+81755348 Msa1081830:three_prime_UTR
TATGTGACAAAGCTACAATG+TGG 0.705519 7_2:+81755281 Msa1081830:exon
GTGACAAAGCTACAATGTGG+AGG 0.717223 7_2:+81755284 Msa1081830:exon
AGCATGCATAGGCATGACAG+GGG 0.720799 7_2:-81755157 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAAATGCTATAT+TGG + chr7_2:81753263-81753282 Msa1081830:five_prime_UTR 10.0%
!! TGTAATAGAAAAAAAAAATA+TGG + chr7_2:81755576-81755595 Msa1081830:three_prime_UTR 10.0%
!! TAATAGCTTATTAAACATAT+TGG + chr7_2:81754070-81754089 Msa1081830:intron 15.0%
!! AAAAAATCTTCAAAATCAAA+AGG + chr7_2:81754655-81754674 Msa1081830:CDS 15.0%
!! AACTGAAAATATTATGAATA+AGG + chr7_2:81754681-81754700 Msa1081830:CDS 15.0%
!!! TGTTAAAAAGTATAGTTTTT+GGG + chr7_2:81755679-81755698 Msa1081830:three_prime_UTR 15.0%
!!! TATATCATAGTTCTAAATTG+CGG - chr7_2:81753961-81753980 None:intergenic 20.0%
!! CTGATAAAATAAATACCATT+AGG - chr7_2:81754012-81754031 None:intergenic 20.0%
!! GTATATTTGATAAAGTCTAA+CGG + chr7_2:81754457-81754476 Msa1081830:intron 20.0%
!! TGATAATAACAATAAAAGTG+AGG + chr7_2:81754825-81754844 Msa1081830:CDS 20.0%
!! GATAATAACAATAAAAGTGA+GGG + chr7_2:81754826-81754845 Msa1081830:CDS 20.0%
!! AAGAAAAAGAAAAACAAAAG+TGG + chr7_2:81754871-81754890 Msa1081830:CDS 20.0%
!! TTAATTAGTGCTTAATGTAA+GGG + chr7_2:81755338-81755357 Msa1081830:three_prime_UTR 20.0%
!! AGATCTAGATTAAAAAAATG+TGG + chr7_2:81755538-81755557 Msa1081830:three_prime_UTR 20.0%
!! GATCTAGATTAAAAAAATGT+GGG + chr7_2:81755539-81755558 Msa1081830:three_prime_UTR 20.0%
!! ATCTAGATTAAAAAAATGTG+GGG + chr7_2:81755540-81755559 Msa1081830:three_prime_UTR 20.0%
!! TACAAAGAAGAAGAAAAAAA+AGG - chr7_2:81755653-81755672 None:intergenic 20.0%
!!! CAAAAACTATACTTTTTAAC+AGG - chr7_2:81755680-81755699 None:intergenic 20.0%
!!! CTGTTAAAAAGTATAGTTTT+TGG + chr7_2:81755678-81755697 Msa1081830:three_prime_UTR 20.0%
! TACTATAGTATACATGTACA+TGG + chr7_2:81753377-81753396 Msa1081830:five_prime_UTR 25.0%
! ACTATAGTATACATGTACAT+GGG + chr7_2:81753378-81753397 Msa1081830:five_prime_UTR 25.0%
!! ATATTTTTCTGAGTACCTAA+TGG + chr7_2:81753994-81754013 Msa1081830:intron 25.0%
! CATGTAATTAACTAAATTCC+AGG - chr7_2:81754143-81754162 None:intergenic 25.0%
!!! GATTTTTTATCTTTCTTCTC+AGG - chr7_2:81754643-81754662 None:intergenic 25.0%
! TATTATGAATAAGGAGATCA+AGG + chr7_2:81754690-81754709 Msa1081830:CDS 25.0%
! CATAATAATTTCCTTAGGAA+TGG - chr7_2:81754989-81755008 None:intergenic 25.0%
! AATGATCATGAAGAATATGA+AGG + chr7_2:81755243-81755262 Msa1081830:CDS 25.0%
! GTTAATTAGTGCTTAATGTA+AGG + chr7_2:81755337-81755356 Msa1081830:three_prime_UTR 25.0%
!! AAATCGTCTTTTTACAAACT+AGG - chr7_2:81755416-81755435 None:intergenic 25.0%
!! TAGTTTGTAAAAAGACGATT+TGG + chr7_2:81755415-81755434 Msa1081830:three_prime_UTR 25.0%
!!! TTTTTGGGTTTGCTATAAAA+AGG + chr7_2:81755694-81755713 Msa1081830:three_prime_UTR 25.0%
! GTTTTGCCAATGCTTTTAAA+GGG - chr7_2:81753413-81753432 None:intergenic 30.0%
! CATTTGAAATGAAGTTTGGT+TGG - chr7_2:81753506-81753525 None:intergenic 30.0%
CAACCAAACTTCATTTCAAA+TGG + chr7_2:81753504-81753523 Msa1081830:exon 30.0%
! ATACTTGAGTGTTTCTAATC+CGG - chr7_2:81753566-81753585 None:intergenic 30.0%
ATTAGAAACACTCAAGTATC+AGG + chr7_2:81753567-81753586 Msa1081830:CDS 30.0%
AAGAGTCAAGAAAATTCTTC+AGG + chr7_2:81753763-81753782 Msa1081830:CDS 30.0%
AGAGTCAAGAAAATTCTTCA+GGG + chr7_2:81753764-81753783 Msa1081830:CDS 30.0%
AAAATTCTTCAGGGAATTGA+AGG + chr7_2:81753773-81753792 Msa1081830:CDS 30.0%
AATGAAGACAAATACATCTG+AGG + chr7_2:81753875-81753894 Msa1081830:intron 30.0%
CAATTATGGCTGCAATATAA+AGG - chr7_2:81753928-81753947 None:intergenic 30.0%
TTATATTGCAGCCATAATTG+CGG + chr7_2:81753928-81753947 Msa1081830:intron 30.0%
TTAGAAGACTAACACTTAAG+TGG - chr7_2:81754053-81754072 None:intergenic 30.0%
ATTGACATGATCAATAAACC+TGG + chr7_2:81754122-81754141 Msa1081830:intron 30.0%
AATATACGTAAGAGTCATAC+AGG - chr7_2:81754444-81754463 None:intergenic 30.0%
TATATCCGTGACAATCATAA+CGG - chr7_2:81754489-81754508 None:intergenic 30.0%
TATGATTGTCACGGATATAT+AGG + chr7_2:81754490-81754509 Msa1081830:intron 30.0%
ATGATTGTCACGGATATATA+GGG + chr7_2:81754491-81754510 Msa1081830:intron 30.0%
! ACAGAACAGAAATTGATTCT+CGG + chr7_2:81754518-81754537 Msa1081830:CDS 30.0%
! TTTTTATCTTTCTTCTCAGG+AGG - chr7_2:81754640-81754659 None:intergenic 30.0%
AATAACAATAAAAGTGAGGG+TGG + chr7_2:81754829-81754848 Msa1081830:CDS 30.0%
GCTTCATTAACTCCAAATAA+TGG + chr7_2:81754898-81754917 Msa1081830:CDS 30.0%
TCATTAACTCCAAATAATGG+AGG + chr7_2:81754901-81754920 Msa1081830:CDS 30.0%
!!! TTCACTTTTTCAAGTACTTG+TGG - chr7_2:81754964-81754983 None:intergenic 30.0%
AGCACTTCTTCTTATTATGT+TGG + chr7_2:81755132-81755151 Msa1081830:CDS 30.0%
!! ATTGTAGCTTTGTCACATAA+TGG - chr7_2:81755280-81755299 None:intergenic 30.0%
ATTAAAAAAATGTGGGGACA+AGG + chr7_2:81755546-81755565 Msa1081830:three_prime_UTR 30.0%
CTTTACACATAAGATAGAGA+AGG - chr7_2:81755769-81755788 None:intergenic 30.0%
! GGTTTTGCCAATGCTTTTAA+AGG - chr7_2:81753414-81753433 None:intergenic 35.0%
CTTAGTGGAGTGGAAAATAA+GGG - chr7_2:81753472-81753491 None:intergenic 35.0%
! CAGCCATTTGAAATGAAGTT+TGG - chr7_2:81753510-81753529 None:intergenic 35.0%
! TACTTGAGTGTTTCTAATCC+GGG - chr7_2:81753565-81753584 None:intergenic 35.0%
!! TTAGTAGACTTGTTAGAGCA+AGG - chr7_2:81753620-81753639 None:intergenic 35.0%
ACCAAAGAATAGATTCAGGA+GGG - chr7_2:81753648-81753667 None:intergenic 35.0%
GTTGACCAAAGAATAGATTC+AGG - chr7_2:81753652-81753671 None:intergenic 35.0%
TTGGTTAAACAGTAGTGTCT+TGG + chr7_2:81754089-81754108 Msa1081830:intron 35.0%
ATCCACTTCAGACTTTATCA+TGG + chr7_2:81754198-81754217 Msa1081830:intron 35.0%
ATCCATGATAAAGTCTGAAG+TGG - chr7_2:81754203-81754222 None:intergenic 35.0%
TGATTGTCACGGATATATAG+GGG + chr7_2:81754492-81754511 Msa1081830:intron 35.0%
ATCAAGAAGCTTTCAAGATC+AGG + chr7_2:81754586-81754605 Msa1081830:CDS 35.0%
TCAAGAAGCTTTCAAGATCA+GGG + chr7_2:81754587-81754606 Msa1081830:CDS 35.0%
! AAGAACAGTACTGAACAAGT+TGG + chr7_2:81754721-81754740 Msa1081830:CDS 35.0%
GAAGATTCAGATCACAAAGA+AGG + chr7_2:81754793-81754812 Msa1081830:CDS 35.0%
GATCACAAAGAAGGTCATAA+TGG + chr7_2:81754802-81754821 Msa1081830:CDS 35.0%
! TTAACTCCAAATAATGGAGG+AGG + chr7_2:81754904-81754923 Msa1081830:CDS 35.0%
! TCTTTTCCTCCTCCATTATT+TGG - chr7_2:81754913-81754932 None:intergenic 35.0%
AAAAGTGAATGCCATTCCTA+AGG + chr7_2:81754975-81754994 Msa1081830:CDS 35.0%
! GGAGGCATAATAATTTCCTT+AGG - chr7_2:81754994-81755013 None:intergenic 35.0%
!! AGTACATATGTGGTGGATAT+GGG - chr7_2:81755044-81755063 None:intergenic 35.0%
!! TAGTACATATGTGGTGGATA+TGG - chr7_2:81755045-81755064 None:intergenic 35.0%
GTGTTATAGCTTAACCCATA+GGG - chr7_2:81755096-81755115 None:intergenic 35.0%
TGTGTTATAGCTTAACCCAT+AGG - chr7_2:81755097-81755116 None:intergenic 35.0%
!! TAAGAAGAAGTGCTAGAAAC+AGG - chr7_2:81755126-81755145 None:intergenic 35.0%
CTAGAGTAATTAGCATGCAT+AGG - chr7_2:81755171-81755190 None:intergenic 35.0%
GATCATGAAGAATATGAAGG+TGG + chr7_2:81755246-81755265 Msa1081830:CDS 35.0%
TATGTGACAAAGCTACAATG+TGG + chr7_2:81755281-81755300 Msa1081830:exon 35.0%
TGCTTAATGTAAGGGAAAGT+GGG + chr7_2:81755346-81755365 Msa1081830:three_prime_UTR 35.0%
TAATGCAGATGTTGCAAAGT+TGG - chr7_2:81755507-81755526 None:intergenic 35.0%
AACATCTGCATTAGAAGTTG+CGG + chr7_2:81755514-81755533 Msa1081830:three_prime_UTR 35.0%
!! CAATGCTTTTAAAGGGTGTG+AGG - chr7_2:81753406-81753425 None:intergenic 40.0%
! CTCACACCCTTTAAAAGCAT+TGG + chr7_2:81753404-81753423 Msa1081830:five_prime_UTR 40.0%
GAAGAAAGCTTGTCTAAGTG+GGG - chr7_2:81753447-81753466 None:intergenic 40.0%
CGAAGAAAGCTTGTCTAAGT+GGG - chr7_2:81753448-81753467 None:intergenic 40.0%
ACGAAGAAAGCTTGTCTAAG+TGG - chr7_2:81753449-81753468 None:intergenic 40.0%
GCTTAGTGGAGTGGAAAATA+AGG - chr7_2:81753473-81753492 None:intergenic 40.0%
TCCCTCCTGAATCTATTCTT+TGG + chr7_2:81753644-81753663 Msa1081830:intron 40.0%
GACCAAAGAATAGATTCAGG+AGG - chr7_2:81753649-81753668 None:intergenic 40.0%
ATGTGATCATTCTACAGACG+TGG + chr7_2:81753702-81753721 Msa1081830:intron 40.0%
TGTGATCATTCTACAGACGT+GGG + chr7_2:81753703-81753722 Msa1081830:intron 40.0%
TCAAGTTTGCAACATAACCG+CGG - chr7_2:81753844-81753863 None:intergenic 40.0%
GAAGACAAATACATCTGAGG+CGG + chr7_2:81753878-81753897 Msa1081830:intron 40.0%
GTTAAACAGTAGTGTCTTGG+CGG + chr7_2:81754092-81754111 Msa1081830:intron 40.0%
TTAAACAGTAGTGTCTTGGC+GGG + chr7_2:81754093-81754112 Msa1081830:intron 40.0%
TCCAACCGTTATGATTGTCA+CGG + chr7_2:81754481-81754500 Msa1081830:intron 40.0%
AAGCTTCTTGATGAGAGTCT+CGG - chr7_2:81754578-81754597 None:intergenic 40.0%
CAGGGAAATCAGTAGAACTT+TGG + chr7_2:81754605-81754624 Msa1081830:CDS 40.0%
! GTTGGTGAAAGTAGTCATGA+AGG + chr7_2:81754739-81754758 Msa1081830:CDS 40.0%
GAAGGTTGTATAGATGATGC+AGG + chr7_2:81754757-81754776 Msa1081830:CDS 40.0%
ATAGATGATGCAGGTGATGA+TGG + chr7_2:81754766-81754785 Msa1081830:CDS 40.0%
TGTGGATAGTACATATGTGG+TGG - chr7_2:81755051-81755070 None:intergenic 40.0%
TTATAGCTTAACCCATAGGG+TGG - chr7_2:81755093-81755112 None:intergenic 40.0%
! TAGCTGTTGATTGGATGAGA+GGG - chr7_2:81755213-81755232 None:intergenic 40.0%
! ATAGCTGTTGATTGGATGAG+AGG - chr7_2:81755214-81755233 None:intergenic 40.0%
TCTCATCCAATCAACAGCTA+TGG + chr7_2:81755213-81755232 Msa1081830:CDS 40.0%
TGATGACCATAGCTGTTGAT+TGG - chr7_2:81755222-81755241 None:intergenic 40.0%
GTGCTTAATGTAAGGGAAAG+TGG + chr7_2:81755345-81755364 Msa1081830:three_prime_UTR 40.0%
GCTTAATGTAAGGGAAAGTG+GGG + chr7_2:81755347-81755366 Msa1081830:three_prime_UTR 40.0%
CTTAATGTAAGGGAAAGTGG+GGG + chr7_2:81755348-81755367 Msa1081830:three_prime_UTR 40.0%
!! ATATGGTGTAGTTTGCTTGC+TGG + chr7_2:81755593-81755612 Msa1081830:three_prime_UTR 40.0%
! GCAGAGCATTACAATGCTAT+TGG - chr7_2:81755720-81755739 None:intergenic 40.0%
TCTAAGTGGGGTGTGTTTGT+TGG - chr7_2:81753435-81753454 None:intergenic 45.0%
! TTGGTACGTAGCTAGCTTAG+TGG - chr7_2:81753487-81753506 None:intergenic 45.0%
! TGTTGATCAGCAGCTGGTTT+GGG - chr7_2:81753535-81753554 None:intergenic 45.0%
TTGTTGATCAGCAGCTGGTT+TGG - chr7_2:81753536-81753555 None:intergenic 45.0%
! TTGAGTGTTTCTAATCCGGG+AGG - chr7_2:81753562-81753581 None:intergenic 45.0%
AAAGTCTTGATCCACTGCGA+CGG + chr7_2:81753731-81753750 Msa1081830:CDS 45.0%
ATAGACACACACACACACCA+TGG + chr7_2:81753805-81753824 Msa1081830:intron 45.0%
! ATCTGAGGCGGCTGTAATTT+CGG + chr7_2:81753890-81753909 Msa1081830:intron 45.0%
TCCGTGACAATCATAACGGT+TGG - chr7_2:81754485-81754504 None:intergenic 45.0%
! AATTGATTCTCGGCAGCACA+AGG + chr7_2:81754528-81754547 Msa1081830:CDS 45.0%
CAGCACAAGGTTACAGTTAC+TGG + chr7_2:81754541-81754560 Msa1081830:CDS 45.0%
! TTCTTCTCAGGAGGCTTTTC+TGG - chr7_2:81754631-81754650 None:intergenic 45.0%
GGGTGTGGATAGTACATATG+TGG - chr7_2:81755054-81755073 None:intergenic 45.0%
TAGCATGCATAGGCATGACA+GGG - chr7_2:81755161-81755180 None:intergenic 45.0%
TTAGCATGCATAGGCATGAC+AGG - chr7_2:81755162-81755181 None:intergenic 45.0%
GTGACAAAGCTACAATGTGG+AGG + chr7_2:81755284-81755303 Msa1081830:exon 45.0%
!! GTGTAGTTTGCTTGCTGGTA+TGG + chr7_2:81755598-81755617 Msa1081830:three_prime_UTR 45.0%
!! TAGTTTGCTTGCTGGTATGG+TGG + chr7_2:81755601-81755620 Msa1081830:three_prime_UTR 45.0%
! AGTTTGCTTGCTGGTATGGT+GGG + chr7_2:81755602-81755621 Msa1081830:three_prime_UTR 45.0%
! ACGTAGCTAGCTTAGTGGAG+TGG - chr7_2:81753482-81753501 None:intergenic 50.0%
!! GGAACTTGTTGATCAGCAGC+TGG - chr7_2:81753541-81753560 None:intergenic 50.0%
GCTGATCAACAAGTTCCTCC+CGG + chr7_2:81753544-81753563 Msa1081830:CDS 50.0%
!! ATGGTTCTGAATTGCGACCG+CGG + chr7_2:81753824-81753843 Msa1081830:intron 50.0%
! GCGGACTACAACCGCAATTA+TGG - chr7_2:81753942-81753961 None:intergenic 50.0%
GGTTACAGTTACTGGCAACG+TGG + chr7_2:81754549-81754568 Msa1081830:CDS 50.0%
GGGTTATAAGCATGCTGCTG+AGG - chr7_2:81755024-81755043 None:intergenic 50.0%
AGCATGCATAGGCATGACAG+GGG - chr7_2:81755160-81755179 None:intergenic 50.0%
TTGATTGGATGAGAGGGTGG+AGG - chr7_2:81755207-81755226 None:intergenic 50.0%
! CTGTTGATTGGATGAGAGGG+TGG - chr7_2:81755210-81755229 None:intergenic 50.0%
! TTTTTGTGCAGCCGTCGCAG+TGG - chr7_2:81753745-81753764 None:intergenic 55.0%
GCGGTCGCAATTCAGAACCA+TGG - chr7_2:81753825-81753844 None:intergenic 55.0%
! AGTAGTGTCTTGGCGGGTCT+TGG + chr7_2:81754099-81754118 Msa1081830:intron 55.0%
!! TGCTGCTGAGGAAGTACTGG+AGG - chr7_2:81755012-81755031 None:intergenic 55.0%
! GCATGCTGCTGAGGAAGTAC+TGG - chr7_2:81755015-81755034 None:intergenic 55.0%
CAGCAGTAGCACCACCCTAT+GGG + chr7_2:81755079-81755098 Msa1081830:CDS 55.0%
ATTGGATGAGAGGGTGGAGG+AGG - chr7_2:81755204-81755223 None:intergenic 55.0%
!! GTGGTGCTACTGCTGGAGGA+GGG - chr7_2:81755074-81755093 None:intergenic 60.0%
!! TAGGGTGGTGCTACTGCTGG+AGG - chr7_2:81755078-81755097 None:intergenic 60.0%
!! CCATAGGGTGGTGCTACTGC+TGG - chr7_2:81755081-81755100 None:intergenic 60.0%
CCAGCAGTAGCACCACCCTA+TGG + chr7_2:81755078-81755097 Msa1081830:CDS 60.0%
GCTACTGCTGGAGGAGGGTG+TGG - chr7_2:81755069-81755088 None:intergenic 65.0%
!! GGTGGTGCTACTGCTGGAGG+AGG - chr7_2:81755075-81755094 None:intergenic 65.0%
GAGAGGGTGGAGGAGGTGGA+GGG - chr7_2:81755197-81755216 None:intergenic 65.0%
TGAGAGGGTGGAGGAGGTGG+AGG - chr7_2:81755198-81755217 None:intergenic 65.0%
GGATGAGAGGGTGGAGGAGG+TGG - chr7_2:81755201-81755220 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81753261 81755798 81753261 ID=Msa1081830;Name=Msa1081830
chr7_2 mRNA 81753261 81755798 81753261 ID=Msa1081830-mRNA-1;Parent=Msa1081830;Name=Msa1081830-mRNA-1;_AED=0.13;_eAED=0.13;_QI=262|1|1|1|1|1|3|511|305
chr7_2 exon 81753261 81753588 81753261 ID=Msa1081830-mRNA-1:exon:20998;Parent=Msa1081830-mRNA-1
chr7_2 exon 81753719 81753794 81753719 ID=Msa1081830-mRNA-1:exon:20999;Parent=Msa1081830-mRNA-1
chr7_2 exon 81754512 81755798 81754512 ID=Msa1081830-mRNA-1:exon:21000;Parent=Msa1081830-mRNA-1
chr7_2 five_prime_UTR 81753261 81753522 81753261 ID=Msa1081830-mRNA-1:five_prime_utr;Parent=Msa1081830-mRNA-1
chr7_2 CDS 81753523 81753588 81753523 ID=Msa1081830-mRNA-1:cds;Parent=Msa1081830-mRNA-1
chr7_2 CDS 81753719 81753794 81753719 ID=Msa1081830-mRNA-1:cds;Parent=Msa1081830-mRNA-1
chr7_2 CDS 81754512 81755287 81754512 ID=Msa1081830-mRNA-1:cds;Parent=Msa1081830-mRNA-1
chr7_2 three_prime_UTR 81755288 81755798 81755288 ID=Msa1081830-mRNA-1:three_prime_utr;Parent=Msa1081830-mRNA-1
Gene Sequence

>Msa1081830

ATGGCTGCACCCAAACCAGCTGCTGATCAACAAGTTCCTCCCGGATTAGAAACACTCAAGTATCAGACGTGGGTTTTAAAAGTCTTGATCCACTGCGACGGCTGCACAAAAAGAGTCAAGAAAATTCTTCAGGGAATTGAAGGGGTTTACAGAACAGAAATTGATTCTCGGCAGCACAAGGTTACAGTTACTGGCAACGTGGATGCCGAGACTCTCATCAAGAAGCTTTCAAGATCAGGGAAATCAGTAGAACTTTGGCCAGAAAAGCCTCCTGAGAAGAAAGATAAAAAATCTTCAAAATCAAAAGGTGAAACTGAAAATATTATGAATAAGGAGATCAAGGAAGATCACAAGAACAGTACTGAACAAGTTGGTGAAAGTAGTCATGAAGGTTGTATAGATGATGCAGGTGATGATGGTGAAGAAGATTCAGATCACAAAGAAGGTCATAATGGTGATAATAACAATAAAAGTGAGGGTGGTGCTAAAAAGAAGAAGAAAAAGAAAAAGAAAAACAAAAGTGGTTCTGCTTCATTAACTCCAAATAATGGAGGAGGAAAAGAAATGATTAGTACAGAAACAATTGATTCACCACAAGTACTTGAAAAAGTGAATGCCATTCCTAAGGAAATTATTATGCCTCCAGTACTTCCTCAGCAGCATGCTTATAACCCATATCCACCACATATGTACTATCCACACCCTCCTCCAGCAGTAGCACCACCCTATGGGTTAAGCTATAACACATCATATCCTGTTTCTAGCACTTCTTCTTATTATGTTGGTGCCCCTGTCATGCCTATGCATGCTAATTACTCTAGATTCCCTCCACCTCCTCCACCCTCTCATCCAATCAACAGCTATGGTCATCATAATGATCATGAAGAATATGAAGGTGGATATTGCTCCATTATGTGA

Protein sequence

>Msa1081830

MAAPKPAADQQVPPGLETLKYQTWVLKVLIHCDGCTKRVKKILQGIEGVYRTEIDSRQHKVTVTGNVDAETLIKKLSRSGKSVELWPEKPPEKKDKKSSKSKGETENIMNKEIKEDHKNSTEQVGESSHEGCIDDAGDDGEEDSDHKEGHNGDNNNKSEGGAKKKKKKKKKNKSGSASLTPNNGGGKEMISTETIDSPQVLEKVNAIPKEIIMPPVLPQQHAYNPYPPHMYYPHPPPAVAPPYGLSYNTSYPVSSTSSYYVGAPVMPMHANYSRFPPPPPPSHPINSYGHHNDHEEYEGGYCSIM*