Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396330 | XP_003625902.3 | 95.779 | 308 | 9 | 3 | 1 | 306 | 1 | 306 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396330 | sp|Q9M8K5|HIP32_ARATH | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 1.27e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396330 | A0A396H6Q4 | 95.779 | 308 | 9 | 3 | 1 | 306 | 1 | 306 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603250 | Msa1396330 | 0.822330 | 2.510078e-53 | -8.615850e-47 |
| Msa0644270 | Msa1396330 | 0.806566 | 7.728822e-50 | -8.615850e-47 |
| Msa0684070 | Msa1396330 | 0.845454 | 4.020330e-59 | -8.615850e-47 |
| Msa1305210 | Msa1396330 | 0.808434 | 3.103041e-50 | -8.615850e-47 |
| Msa1019220 | Msa1396330 | 0.801690 | 7.995234e-49 | -8.615850e-47 |
| Msa1019230 | Msa1396330 | 0.811496 | 6.801349e-51 | -8.615850e-47 |
| Msa1081830 | Msa1396330 | 0.863291 | 2.764594e-64 | -8.615850e-47 |
| Msa1104130 | Msa1396330 | 0.811016 | 8.643722e-51 | -8.615850e-47 |
| Msa1166040 | Msa1396330 | 0.998927 | 3.466241e-282 | -8.615850e-47 |
| Msa0581210 | Msa1396330 | 0.979703 | 1.490698e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396330 | MtrunA17_Chr7g0269081 | 95.779 | 308 | 9 | 3 | 1 | 306 | 1 | 306 | 0.0 | 586 |
| Msa1396330 | MtrunA17_Chr4g0067291 | 34.796 | 319 | 146 | 14 | 19 | 306 | 71 | 358 | 1.14e-33 | 126 |
| Msa1396330 | MtrunA17_Chr1g0208301 | 67.606 | 71 | 23 | 0 | 16 | 86 | 7 | 77 | 6.32e-26 | 105 |
| Msa1396330 | MtrunA17_Chr2g0287751 | 67.143 | 70 | 23 | 0 | 17 | 86 | 5 | 74 | 5.42e-24 | 101 |
| Msa1396330 | MtrunA17_Chr4g0065651 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 5.28e-23 | 99.0 |
| Msa1396330 | MtrunA17_Chr0c22g0493881 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 6.31e-23 | 97.4 |
| Msa1396330 | MtrunA17_Chr4g0065621 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 6.11e-22 | 94.7 |
| Msa1396330 | MtrunA17_Chr2g0296001 | 45.385 | 130 | 62 | 2 | 2 | 130 | 61 | 182 | 1.55e-21 | 93.2 |
| Msa1396330 | MtrunA17_Chr1g0192131 | 53.933 | 89 | 33 | 2 | 1 | 88 | 1 | 82 | 1.10e-20 | 91.3 |
| Msa1396330 | MtrunA17_Chr7g0272571 | 54.286 | 70 | 32 | 0 | 22 | 91 | 33 | 102 | 1.15e-19 | 88.2 |
| Msa1396330 | MtrunA17_Chr1g0191671 | 57.143 | 70 | 30 | 0 | 17 | 86 | 5 | 74 | 3.01e-19 | 88.2 |
| Msa1396330 | MtrunA17_Chr3g0111541 | 48.611 | 72 | 37 | 0 | 17 | 88 | 7 | 78 | 2.45e-15 | 73.6 |
| Msa1396330 | MtrunA17_Chr2g0287741 | 61.905 | 63 | 24 | 0 | 24 | 86 | 17 | 79 | 6.18e-15 | 75.1 |
| Msa1396330 | MtrunA17_Chr1g0160201 | 43.478 | 69 | 39 | 0 | 22 | 90 | 25 | 93 | 4.87e-14 | 68.6 |
| Msa1396330 | MtrunA17_Chr4g0036931 | 44.444 | 72 | 39 | 1 | 20 | 90 | 26 | 97 | 5.53e-14 | 68.6 |
| Msa1396330 | MtrunA17_Chr3g0124411 | 47.887 | 71 | 37 | 0 | 20 | 90 | 28 | 98 | 8.96e-14 | 67.8 |
| Msa1396330 | MtrunA17_Chr5g0407821 | 42.424 | 66 | 38 | 0 | 22 | 87 | 23 | 88 | 3.65e-13 | 65.9 |
| Msa1396330 | MtrunA17_Chr8g0382721 | 47.692 | 65 | 34 | 0 | 26 | 90 | 33 | 97 | 8.86e-13 | 65.1 |
| Msa1396330 | MtrunA17_Chr7g0218981 | 40.000 | 70 | 42 | 0 | 19 | 88 | 1 | 70 | 1.95e-12 | 63.5 |
| Msa1396330 | MtrunA17_Chr3g0115421 | 33.010 | 103 | 56 | 2 | 26 | 115 | 30 | 132 | 7.95e-12 | 62.4 |
| Msa1396330 | MtrunA17_Chr3g0145621 | 37.500 | 72 | 44 | 1 | 20 | 90 | 24 | 95 | 1.70e-11 | 61.6 |
| Msa1396330 | MtrunA17_Chr1g0198341 | 40.260 | 77 | 45 | 1 | 19 | 94 | 1 | 77 | 1.93e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396330 | AT3G06130.2 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 1.20e-23 | 99.4 |
| Msa1396330 | AT3G06130.1 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 1.29e-23 | 100 |
| Msa1396330 | AT5G27690.1 | 59.155 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 3.71e-23 | 98.2 |
| Msa1396330 | AT5G19090.2 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.76e-22 | 97.4 |
| Msa1396330 | AT5G19090.3 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.76e-22 | 97.4 |
| Msa1396330 | AT5G19090.5 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 2.30e-22 | 97.8 |
| Msa1396330 | AT5G19090.4 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 2.30e-22 | 97.8 |
| Msa1396330 | AT5G19090.1 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 2.30e-22 | 97.8 |
| Msa1396330 | AT1G23000.1 | 45.455 | 99 | 46 | 1 | 16 | 106 | 7 | 105 | 5.67e-21 | 92.0 |
| Msa1396330 | AT1G23000.2 | 45.455 | 99 | 46 | 1 | 16 | 106 | 67 | 165 | 1.25e-20 | 91.7 |
| Msa1396330 | AT1G56210.1 | 54.286 | 70 | 32 | 0 | 21 | 90 | 39 | 108 | 2.25e-19 | 87.8 |
| Msa1396330 | AT3G05220.1 | 55.714 | 70 | 31 | 0 | 17 | 86 | 5 | 74 | 3.01e-18 | 85.5 |
| Msa1396330 | AT5G37860.1 | 48.611 | 72 | 37 | 0 | 22 | 93 | 10 | 81 | 2.38e-15 | 75.1 |
| Msa1396330 | AT1G71050.1 | 42.029 | 69 | 40 | 0 | 22 | 90 | 28 | 96 | 9.53e-13 | 65.5 |
| Msa1396330 | AT1G06330.1 | 45.902 | 61 | 33 | 0 | 26 | 86 | 6 | 66 | 4.88e-12 | 63.2 |
| Msa1396330 | AT4G38580.1 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 1.82e-11 | 61.6 |
| Msa1396330 | AT4G38580.2 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 1.82e-11 | 61.6 |
| Msa1396330 | AT3G56240.3 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 2.01e-11 | 60.8 |
| Msa1396330 | AT3G56240.1 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 2.01e-11 | 60.8 |
| Msa1396330 | AT3G56891.1 | 43.548 | 62 | 35 | 0 | 26 | 87 | 20 | 81 | 3.18e-11 | 61.2 |
| Msa1396330 | AT3G56891.2 | 43.103 | 58 | 33 | 0 | 30 | 87 | 1 | 58 | 3.64e-11 | 60.8 |
Find 103 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCACAAGGTTACAGTTAC+TGG | 0.264090 | tig0022022:-30500 | Msa1396330:CDS |
| TGAGAGGGTGGAGGAGGTGG+AGG | 0.275287 | tig0022022:+29843 | None:intergenic |
| GCTTCATTAACTCCAAATAA+TGG | 0.285010 | tig0022022:-30140 | Msa1396330:CDS |
| GCTTAGTGGAGTGGAAAATA+AGG | 0.302835 | tig0022022:+31509 | None:intergenic |
| AAGAGTCAAGAAAATTCTTC+AGG | 0.319616 | tig0022022:-31216 | Msa1396330:CDS |
| TGAAACTGAAAATATTAATA+AGG | 0.330846 | tig0022022:-30363 | Msa1396330:CDS |
| ACAGAACAGAAATTGATTCT+TGG | 0.330890 | tig0022022:-30523 | Msa1396330:CDS |
| TAGTACATATGTGGTGGATA+TGG | 0.331565 | tig0022022:+29996 | None:intergenic |
| GTTAATTAGTGCTTAATGTA+AGG | 0.337945 | tig0022022:-29699 | Msa1396330:three_prime_UTR |
| TGTATAGCTTTGTCACATAA+TGG | 0.351866 | tig0022022:+29761 | None:intergenic |
| TGTTGATCAGCAGCTGGTTT+GGG | 0.352102 | tig0022022:+31447 | None:intergenic |
| ATTAGAAACACTCAAGTATC+AGG | 0.357551 | tig0022022:-31412 | Msa1396330:intron |
| CAGCCATTTGAAATGAAGTT+TGG | 0.358581 | tig0022022:+31472 | None:intergenic |
| ATCAAGAAGCTTTCAAGATC+AGG | 0.368275 | tig0022022:-30455 | Msa1396330:CDS |
| TTGTTGATCAGCAGCTGGTT+TGG | 0.374527 | tig0022022:+31446 | None:intergenic |
| GGATGAGAGGGTGGAGGAGG+TGG | 0.374539 | tig0022022:+29840 | None:intergenic |
| ATACTTGAGTGTTTCTAATC+CGG | 0.381184 | tig0022022:+31416 | None:intergenic |
| GCAGAGCATTACAATGCTAT+TGG | 0.387344 | tig0022022:+29319 | None:intergenic |
| AGCACTTCTTCTTATTATGT+TGG | 0.397233 | tig0022022:-29906 | Msa1396330:CDS |
| TCTAAGTGGGGTGTGTTTGT+TGG | 0.404477 | tig0022022:+31547 | None:intergenic |
| CAACCAAACTTCATTTCAAA+TGG | 0.404986 | tig0022022:-31475 | Msa1396330:exon |
| GTGTAGTTTGCTTGCTGGTA+TGG | 0.419290 | tig0022022:-29438 | Msa1396330:three_prime_UTR |
| TGCTTAATGTAAGGGAAAGT+GGG | 0.420370 | tig0022022:-29690 | Msa1396330:three_prime_UTR |
| GCTACTGCTGGAGGAGGGTG+TGG | 0.422467 | tig0022022:+29972 | None:intergenic |
| TAAGAAGAAGTGCTAGAAAC+AGG | 0.428358 | tig0022022:+29915 | None:intergenic |
| ATATGGTGTAGTTTGCTTGC+TGG | 0.428624 | tig0022022:-29443 | Msa1396330:three_prime_UTR |
| CTCACACCCTTTAAAAGCAT+TGG | 0.430712 | tig0022022:-31575 | Msa1396330:five_prime_UTR |
| AAAATTCTTCAGGGAATTGA+AGG | 0.432486 | tig0022022:-31206 | Msa1396330:intron |
| TGATGACCATAGCTGTTGAT+TGG | 0.433870 | tig0022022:+29819 | None:intergenic |
| GTGCTTAATGTAAGGGAAAG+TGG | 0.434606 | tig0022022:-29691 | Msa1396330:three_prime_UTR |
| TTAGCATGCATGGGCATGAC+AGG | 0.444727 | tig0022022:+29879 | None:intergenic |
| GGTGGTGCTACTGCTGGAGG+AGG | 0.445055 | tig0022022:+29966 | None:intergenic |
| CCAGCAGTAGCACCACCCTA+TGG | 0.447198 | tig0022022:-29960 | Msa1396330:CDS |
| ATTGGATGAGAGGGTGGAGG+AGG | 0.450211 | tig0022022:+29837 | None:intergenic |
| GCATGCTGCTGAGGAAGTAC+TGG | 0.452781 | tig0022022:+30026 | None:intergenic |
| GATCACAAAGAAGGTCATAA+TGG | 0.457322 | tig0022022:-30236 | Msa1396330:CDS |
| TTAATTAGTGCTTAATGTAA+GGG | 0.467475 | tig0022022:-29698 | Msa1396330:three_prime_UTR |
| GGAGGCATAATAATTTCCTT+AGG | 0.468365 | tig0022022:+30047 | None:intergenic |
| AGTACATATGTGGTGGATAT+GGG | 0.469995 | tig0022022:+29997 | None:intergenic |
| ACGAAGAAAGCTTGTCTAAG+TGG | 0.471666 | tig0022022:+31533 | None:intergenic |
| TTGGTACGTAGCTAGCTTAG+TGG | 0.480383 | tig0022022:+31495 | None:intergenic |
| TACTTGAGTGTTTCTAATCC+GGG | 0.491731 | tig0022022:+31417 | None:intergenic |
| CATAATAATTTCCTTAGGAA+TGG | 0.491755 | tig0022022:+30052 | None:intergenic |
| CTTAGTGGAGTGGAAAATAA+GGG | 0.493762 | tig0022022:+31510 | None:intergenic |
| GGAACTTGTTGATCAGCAGC+TGG | 0.496704 | tig0022022:+31441 | None:intergenic |
| TACTATACTATACATGTACA+TGG | 0.497297 | tig0022022:-31602 | Msa1396330:five_prime_UTR |
| CATTTGAAATGAAGTTTGGT+TGG | 0.501265 | tig0022022:+31476 | None:intergenic |
| TGTATAGATGATGCAATTGC+AGG | 0.502278 | tig0022022:-30281 | Msa1396330:CDS |
| AGTTTGCTTGCTGGTATGGT+GGG | 0.503457 | tig0022022:-29434 | Msa1396330:three_prime_UTR |
| CCATAGGGTGGTGCTACTGC+TGG | 0.507340 | tig0022022:+29960 | None:intergenic |
| TCTAGAGTAATTAGCATGCA+TGG | 0.510452 | tig0022022:+29869 | None:intergenic |
| AAATATTAATAAGGAGATCA+AGG | 0.511134 | tig0022022:-30354 | Msa1396330:CDS |
| CGAAGAAAGCTTGTCTAAGT+GGG | 0.515764 | tig0022022:+31534 | None:intergenic |
| TAGTTTGCTTGCTGGTATGG+TGG | 0.517121 | tig0022022:-29435 | Msa1396330:three_prime_UTR |
| CAGGGAAATCAGTAGAACTT+TGG | 0.517951 | tig0022022:-30436 | Msa1396330:CDS |
| GAAGATTCAGATCACAAAGA+AGG | 0.518960 | tig0022022:-30245 | Msa1396330:CDS |
| GAGAGGGTGGAGGAGGTGGA+GGG | 0.528150 | tig0022022:+29844 | None:intergenic |
| TAATGCAGATGTTGCAAAGT+CGG | 0.537492 | tig0022022:+29532 | None:intergenic |
| TCAAGAAGCTTTCAAGATCA+GGG | 0.538607 | tig0022022:-30454 | Msa1396330:CDS |
| GATGCAATTGCAGGTGATGA+TGG | 0.539060 | tig0022022:-30272 | Msa1396330:CDS |
| TAGGGTGGTGCTACTGCTGG+AGG | 0.544543 | tig0022022:+29963 | None:intergenic |
| GTGGTGCTACTGCTGGAGGA+GGG | 0.547041 | tig0022022:+29967 | None:intergenic |
| CAGCAGTAGCACCACCCTAT+GGG | 0.554674 | tig0022022:-29959 | Msa1396330:CDS |
| TTGATTGGATGAGAGGGTGG+AGG | 0.558090 | tig0022022:+29834 | None:intergenic |
| GATAATAACAATAAAAGTGA+GGG | 0.562957 | tig0022022:-30212 | Msa1396330:CDS |
| TGTGTTATAGCTTAACCCAT+AGG | 0.565506 | tig0022022:+29944 | None:intergenic |
| GTGTTATAGCTTAACCCATA+GGG | 0.565951 | tig0022022:+29945 | None:intergenic |
| AACATCTGCATTAGAAGTTG+CGG | 0.568622 | tig0022022:-29522 | Msa1396330:three_prime_UTR |
| AGAGTCAAGAAAATTCTTCA+GGG | 0.568811 | tig0022022:-31215 | Msa1396330:CDS |
| AAAAGTGAATGCCATTCCTA+AGG | 0.569713 | tig0022022:-30063 | Msa1396330:CDS |
| TTAACTCCAAATAATGGAGG+AGG | 0.576698 | tig0022022:-30134 | Msa1396330:CDS |
| AATTGATTCTTGGCAGCACA+AGG | 0.578132 | tig0022022:-30513 | Msa1396330:CDS |
| GTTGGTGAAAGTAGTCATGA+AGG | 0.580432 | tig0022022:-30305 | Msa1396330:CDS |
| CTAGAGTAATTAGCATGCAT+GGG | 0.582346 | tig0022022:+29870 | None:intergenic |
| GGGTTATAAGCATGCTGCTG+AGG | 0.582921 | tig0022022:+30017 | None:intergenic |
| GCTGATCAACAAGTTCCTCC+CGG | 0.583544 | tig0022022:-31435 | Msa1396330:CDS |
| GCTTAATGTAAGGGAAAGTG+GGG | 0.583691 | tig0022022:-29689 | Msa1396330:three_prime_UTR |
| TCTCATCCAATCAACAGCTA+TGG | 0.586584 | tig0022022:-29825 | Msa1396330:CDS |
| TAGCATGCATGGGCATGACA+GGG | 0.586920 | tig0022022:+29880 | None:intergenic |
| AATGATCATGAAGAATATGA+AGG | 0.589711 | tig0022022:-29795 | Msa1396330:CDS |
| TGATAATAACAATAAAAGTG+AGG | 0.591536 | tig0022022:-30213 | Msa1396330:CDS |
| GATCATGAAGAATATGAAGG+TGG | 0.598780 | tig0022022:-29792 | Msa1396330:CDS |
| CTGTTGATTGGATGAGAGGG+TGG | 0.603779 | tig0022022:+29831 | None:intergenic |
| AATAACAATAAAAGTGAGGG+TGG | 0.610406 | tig0022022:-30209 | Msa1396330:CDS |
| GGGTGTGGATAGTACATATG+TGG | 0.614125 | tig0022022:+29987 | None:intergenic |
| TGCTGCTGAGGAAGTACTGG+AGG | 0.614651 | tig0022022:+30029 | None:intergenic |
| AAAGTCTTGATCCACTGCGA+CGG | 0.628481 | tig0022022:-31248 | Msa1396330:CDS |
| AAGAACAGTACTGAACAAGT+TGG | 0.630407 | tig0022022:-30323 | Msa1396330:CDS |
| TGTGGATAGTACATATGTGG+TGG | 0.633196 | tig0022022:+29990 | None:intergenic |
| ACGTAGCTAGCTTAGTGGAG+TGG | 0.638739 | tig0022022:+31500 | None:intergenic |
| CTTTACACATAAGATAGAGA+AGG | 0.643549 | tig0022022:+29270 | None:intergenic |
| ATAGCTGTTGATTGGATGAG+AGG | 0.644634 | tig0022022:+29827 | None:intergenic |
| AGCATGCATGGGCATGACAG+GGG | 0.652187 | tig0022022:+29881 | None:intergenic |
| TAGCTGTTGATTGGATGAGA+GGG | 0.658334 | tig0022022:+29828 | None:intergenic |
| ACTATACTATACATGTACAT+GGG | 0.661840 | tig0022022:-31601 | Msa1396330:five_prime_UTR |
| TCATTAACTCCAAATAATGG+AGG | 0.678633 | tig0022022:-30137 | Msa1396330:CDS |
| TTATAGCTTAACCCATAGGG+TGG | 0.684519 | tig0022022:+29948 | None:intergenic |
| GAAGAAAGCTTGTCTAAGTG+GGG | 0.685656 | tig0022022:+31535 | None:intergenic |
| TTGAGTGTTTCTAATCCGGG+AGG | 0.702857 | tig0022022:+31420 | None:intergenic |
| TGTGACAAAGCTATACAATG+TGG | 0.703248 | tig0022022:-29755 | Msa1396330:exon |
| GGTTACAGTTACTGGCAACG+TGG | 0.704095 | tig0022022:-30492 | Msa1396330:CDS |
| CTTAATGTAAGGGAAAGTGG+GGG | 0.705125 | tig0022022:-29688 | Msa1396330:three_prime_UTR |
| GACAAAGCTATACAATGTGG+AGG | 0.713576 | tig0022022:-29752 | Msa1396330:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAAATGCTATAT+TGG | - | tig0022022:29263-29282 | Msa1396330:three_prime_UTR | 10.0% |
| !! | TGTAATAGAAAAAAAAAATA+TGG | - | tig0022022:31516-31535 | Msa1396330:five_prime_UTR | 10.0% |
| !!! | TATTTTGAGAAAAAGAAAAA+AGG | - | tig0022022:29303-29322 | Msa1396330:three_prime_UTR | 15.0% |
| !! | TAATAGCTTATTAAACATAT+TGG | - | tig0022022:30069-30088 | Msa1396330:CDS | 15.0% |
| !! | TATATTTGATTAAAGTCTAA+CGG | - | tig0022022:30392-30411 | Msa1396330:CDS | 15.0% |
| !! | AAAAAATCTTCAAAATCAAA+AGG | - | tig0022022:30590-30609 | Msa1396330:intron | 15.0% |
| !! | TGAAACTGAAAATATTAATA+AGG | - | tig0022022:30613-30632 | Msa1396330:intron | 15.0% |
| !!! | AAAAAACTATACTTTTTAAC+AGG | + | tig0022022:31619-31638 | None:intergenic | 15.0% |
| !!! | TGTTAAAAAGTATAGTTTTT+TGG | - | tig0022022:31618-31637 | Msa1396330:five_prime_UTR | 15.0% |
| !!! | GTTAAAAAGTATAGTTTTTT+GGG | - | tig0022022:31619-31638 | Msa1396330:five_prime_UTR | 15.0% |
| !!! | TATATCATAGTTCTAAATTG+CGG | + | tig0022022:29958-29977 | None:intergenic | 20.0% |
| !! | CTGATAAAATAAATACCATT+AGG | + | tig0022022:30009-30028 | None:intergenic | 20.0% |
| !! | AAATATTAATAAGGAGATCA+AGG | - | tig0022022:30622-30641 | Msa1396330:intron | 20.0% |
| !! | TGATAATAACAATAAAAGTG+AGG | - | tig0022022:30763-30782 | Msa1396330:intron | 20.0% |
| !! | GATAATAACAATAAAAGTGA+GGG | - | tig0022022:30764-30783 | Msa1396330:intron | 20.0% |
| !! | AAGAAAAAGAAAAACAAAAG+TGG | - | tig0022022:30809-30828 | Msa1396330:intron | 20.0% |
| !! | TTAATTAGTGCTTAATGTAA+GGG | - | tig0022022:31278-31297 | Msa1396330:intron | 20.0% |
| !! | AGATCTAGATTAAAAAAATG+TGG | - | tig0022022:31478-31497 | Msa1396330:exon | 20.0% |
| !! | GATCTAGATTAAAAAAATGT+GGG | - | tig0022022:31479-31498 | Msa1396330:five_prime_UTR | 20.0% |
| !! | ATCTAGATTAAAAAAATGTG+GGG | - | tig0022022:31480-31499 | Msa1396330:five_prime_UTR | 20.0% |
| !! | ATACAAAGAAGAAGAAAAAA+AGG | + | tig0022022:31593-31612 | None:intergenic | 20.0% |
| ! | TACTATACTATACATGTACA+TGG | - | tig0022022:29374-29393 | Msa1396330:three_prime_UTR | 25.0% |
| ! | ACTATACTATACATGTACAT+GGG | - | tig0022022:29375-29394 | Msa1396330:three_prime_UTR | 25.0% |
| !! | ATATTTTTCTGAGTACCTAA+TGG | - | tig0022022:29991-30010 | Msa1396330:CDS | 25.0% |
| ! | CATGTAATTAACTAAATTCC+AGG | + | tig0022022:30142-30161 | None:intergenic | 25.0% |
| !!! | GATTTTTTATCTTTCTTCTC+AGG | + | tig0022022:30578-30597 | None:intergenic | 25.0% |
| ! | CATAATAATTTCCTTAGGAA+TGG | + | tig0022022:30927-30946 | None:intergenic | 25.0% |
| ! | AATGATCATGAAGAATATGA+AGG | - | tig0022022:31181-31200 | Msa1396330:intron | 25.0% |
| ! | GTTAATTAGTGCTTAATGTA+AGG | - | tig0022022:31277-31296 | Msa1396330:intron | 25.0% |
| !! | AAATCGTCTTTTTACAAACT+AGG | + | tig0022022:31356-31375 | None:intergenic | 25.0% |
| !! | TAGTTTGTAAAAAGACGATT+TGG | - | tig0022022:31355-31374 | Msa1396330:intron | 25.0% |
| !!! | TTTTTGGGTTTGCTAAAAAA+AGG | - | tig0022022:31634-31653 | Msa1396330:five_prime_UTR | 25.0% |
| CTAAAAAGACAATTGTGAGA+CGG | - | tig0022022:29326-29345 | Msa1396330:three_prime_UTR | 30.0% | |
| ! | GTTTTGCCAATGCTTTTAAA+GGG | + | tig0022022:29410-29429 | None:intergenic | 30.0% |
| ! | CATTTGAAATGAAGTTTGGT+TGG | + | tig0022022:29503-29522 | None:intergenic | 30.0% |
| CAACCAAACTTCATTTCAAA+TGG | - | tig0022022:29501-29520 | Msa1396330:three_prime_UTR | 30.0% | |
| ! | ATACTTGAGTGTTTCTAATC+CGG | + | tig0022022:29563-29582 | None:intergenic | 30.0% |
| ATTAGAAACACTCAAGTATC+AGG | - | tig0022022:29564-29583 | Msa1396330:three_prime_UTR | 30.0% | |
| AAGAGTCAAGAAAATTCTTC+AGG | - | tig0022022:29760-29779 | Msa1396330:exon | 30.0% | |
| AGAGTCAAGAAAATTCTTCA+GGG | - | tig0022022:29761-29780 | Msa1396330:exon | 30.0% | |
| AAAATTCTTCAGGGAATTGA+AGG | - | tig0022022:29770-29789 | Msa1396330:exon | 30.0% | |
| AATGAAGACAAATACAACTG+AGG | - | tig0022022:29872-29891 | Msa1396330:CDS | 30.0% | |
| CAATTATGGCTGCAATATAA+AGG | + | tig0022022:29925-29944 | None:intergenic | 30.0% | |
| TTATATTGCAGCCATAATTG+CGG | - | tig0022022:29925-29944 | Msa1396330:CDS | 30.0% | |
| TTAGAAGACTAACACTTAAG+TGG | + | tig0022022:30052-30071 | None:intergenic | 30.0% | |
| ATTGACATGATCAATAAACC+TGG | - | tig0022022:30121-30140 | Msa1396330:CDS | 30.0% | |
| TATATCCGTGACAATCATAA+CGG | + | tig0022022:30424-30443 | None:intergenic | 30.0% | |
| TATGATTGTCACGGATATAT+AGG | - | tig0022022:30425-30444 | Msa1396330:CDS | 30.0% | |
| ATGATTGTCACGGATATATA+GGG | - | tig0022022:30426-30445 | Msa1396330:CDS | 30.0% | |
| ! | ACAGAACAGAAATTGATTCT+TGG | - | tig0022022:30453-30472 | Msa1396330:CDS | 30.0% |
| ! | TTTTTATCTTTCTTCTCAGG+AGG | + | tig0022022:30575-30594 | None:intergenic | 30.0% |
| AATAACAATAAAAGTGAGGG+TGG | - | tig0022022:30767-30786 | Msa1396330:intron | 30.0% | |
| GCTTCATTAACTCCAAATAA+TGG | - | tig0022022:30836-30855 | Msa1396330:intron | 30.0% | |
| TCATTAACTCCAAATAATGG+AGG | - | tig0022022:30839-30858 | Msa1396330:intron | 30.0% | |
| !!! | TTCACTTTTTCAAGTACTTG+TGG | + | tig0022022:30902-30921 | None:intergenic | 30.0% |
| AGCACTTCTTCTTATTATGT+TGG | - | tig0022022:31070-31089 | Msa1396330:intron | 30.0% | |
| !! | TGTATAGCTTTGTCACATAA+TGG | + | tig0022022:31218-31237 | None:intergenic | 30.0% |
| ATTAAAAAAATGTGGGGACA+AGG | - | tig0022022:31486-31505 | Msa1396330:five_prime_UTR | 30.0% | |
| CTTTACACATAAGATAGAGA+AGG | + | tig0022022:31709-31728 | None:intergenic | 30.0% | |
| ! | GGTTTTGCCAATGCTTTTAA+AGG | + | tig0022022:29411-29430 | None:intergenic | 35.0% |
| CTTAGTGGAGTGGAAAATAA+GGG | + | tig0022022:29469-29488 | None:intergenic | 35.0% | |
| ! | CAGCCATTTGAAATGAAGTT+TGG | + | tig0022022:29507-29526 | None:intergenic | 35.0% |
| ! | TACTTGAGTGTTTCTAATCC+GGG | + | tig0022022:29562-29581 | None:intergenic | 35.0% |
| !! | TTAGTAGACTTGTTAGAGCA+AGG | + | tig0022022:29617-29636 | None:intergenic | 35.0% |
| AGCAAAGAATAGATTCAGGA+GGG | + | tig0022022:29645-29664 | None:intergenic | 35.0% | |
| GTTGAGCAAAGAATAGATTC+AGG | + | tig0022022:29649-29668 | None:intergenic | 35.0% | |
| TTGGTTAAAGAGTAGTGTCT+TGG | - | tig0022022:30088-30107 | Msa1396330:CDS | 35.0% | |
| ATCCACTTCAGACTTTATCA+TGG | - | tig0022022:30215-30234 | Msa1396330:CDS | 35.0% | |
| ATCCATGATAAAGTCTGAAG+TGG | + | tig0022022:30220-30239 | None:intergenic | 35.0% | |
| AATATACGTAAGAGTCGTAC+AGG | + | tig0022022:30378-30397 | None:intergenic | 35.0% | |
| TGATTGTCACGGATATATAG+GGG | - | tig0022022:30427-30446 | Msa1396330:CDS | 35.0% | |
| ATCAAGAAGCTTTCAAGATC+AGG | - | tig0022022:30521-30540 | Msa1396330:CDS | 35.0% | |
| TCAAGAAGCTTTCAAGATCA+GGG | - | tig0022022:30522-30541 | Msa1396330:CDS | 35.0% | |
| ! | AAGAACAGTACTGAACAAGT+TGG | - | tig0022022:30653-30672 | Msa1396330:intron | 35.0% |
| TGTATAGATGATGCAATTGC+AGG | - | tig0022022:30695-30714 | Msa1396330:intron | 35.0% | |
| GAAGATTCAGATCACAAAGA+AGG | - | tig0022022:30731-30750 | Msa1396330:intron | 35.0% | |
| GATCACAAAGAAGGTCATAA+TGG | - | tig0022022:30740-30759 | Msa1396330:intron | 35.0% | |
| ! | TTAACTCCAAATAATGGAGG+AGG | - | tig0022022:30842-30861 | Msa1396330:intron | 35.0% |
| ! | TCTTTTCCTCCTCCATTATT+TGG | + | tig0022022:30851-30870 | None:intergenic | 35.0% |
| AAAAGTGAATGCCATTCCTA+AGG | - | tig0022022:30913-30932 | Msa1396330:intron | 35.0% | |
| ! | GGAGGCATAATAATTTCCTT+AGG | + | tig0022022:30932-30951 | None:intergenic | 35.0% |
| !! | AGTACATATGTGGTGGATAT+GGG | + | tig0022022:30982-31001 | None:intergenic | 35.0% |
| !! | TAGTACATATGTGGTGGATA+TGG | + | tig0022022:30983-31002 | None:intergenic | 35.0% |
| GTGTTATAGCTTAACCCATA+GGG | + | tig0022022:31034-31053 | None:intergenic | 35.0% | |
| TGTGTTATAGCTTAACCCAT+AGG | + | tig0022022:31035-31054 | None:intergenic | 35.0% | |
| !! | TAAGAAGAAGTGCTAGAAAC+AGG | + | tig0022022:31064-31083 | None:intergenic | 35.0% |
| CTAGAGTAATTAGCATGCAT+GGG | + | tig0022022:31109-31128 | None:intergenic | 35.0% | |
| ! | TCTAGAGTAATTAGCATGCA+TGG | + | tig0022022:31110-31129 | None:intergenic | 35.0% |
| GATCATGAAGAATATGAAGG+TGG | - | tig0022022:31184-31203 | Msa1396330:intron | 35.0% | |
| TGTGACAAAGCTATACAATG+TGG | - | tig0022022:31221-31240 | Msa1396330:CDS | 35.0% | |
| TGCTTAATGTAAGGGAAAGT+GGG | - | tig0022022:31286-31305 | Msa1396330:intron | 35.0% | |
| TAATGCAGATGTTGCAAAGT+CGG | + | tig0022022:31447-31466 | None:intergenic | 35.0% | |
| AACATCTGCATTAGAAGTTG+CGG | - | tig0022022:31454-31473 | Msa1396330:CDS | 35.0% | |
| !! | CAATGCTTTTAAAGGGTGTG+AGG | + | tig0022022:29403-29422 | None:intergenic | 40.0% |
| ! | CTCACACCCTTTAAAAGCAT+TGG | - | tig0022022:29401-29420 | Msa1396330:three_prime_UTR | 40.0% |
| GAAGAAAGCTTGTCTAAGTG+GGG | + | tig0022022:29444-29463 | None:intergenic | 40.0% | |
| CGAAGAAAGCTTGTCTAAGT+GGG | + | tig0022022:29445-29464 | None:intergenic | 40.0% | |
| ACGAAGAAAGCTTGTCTAAG+TGG | + | tig0022022:29446-29465 | None:intergenic | 40.0% | |
| GCTTAGTGGAGTGGAAAATA+AGG | + | tig0022022:29470-29489 | None:intergenic | 40.0% | |
| GAGCAAAGAATAGATTCAGG+AGG | + | tig0022022:29646-29665 | None:intergenic | 40.0% | |
| ATGTGATCATTCTACAGACG+TGG | - | tig0022022:29699-29718 | Msa1396330:three_prime_UTR | 40.0% | |
| TGTGATCATTCTACAGACGT+GGG | - | tig0022022:29700-29719 | Msa1396330:three_prime_UTR | 40.0% | |
| TCAAGTTTGCAACATAACCG+CGG | + | tig0022022:29841-29860 | None:intergenic | 40.0% | |
| GAAGACAAATACAACTGAGG+CGG | - | tig0022022:29875-29894 | Msa1396330:CDS | 40.0% | |
| GTTAAAGAGTAGTGTCTTGG+CGG | - | tig0022022:30091-30110 | Msa1396330:CDS | 40.0% | |
| TTAAAGAGTAGTGTCTTGGC+GGG | - | tig0022022:30092-30111 | Msa1396330:CDS | 40.0% | |
| TCCAACCGTTATGATTGTCA+CGG | - | tig0022022:30416-30435 | Msa1396330:CDS | 40.0% | |
| ! | AATTGATTCTTGGCAGCACA+AGG | - | tig0022022:30463-30482 | Msa1396330:CDS | 40.0% |
| CAGGGAAATCAGTAGAACTT+TGG | - | tig0022022:30540-30559 | Msa1396330:intron | 40.0% | |
| ! | GTTGGTGAAAGTAGTCATGA+AGG | - | tig0022022:30671-30690 | Msa1396330:intron | 40.0% |
| TGTGGATAGTACATATGTGG+TGG | + | tig0022022:30989-31008 | None:intergenic | 40.0% | |
| TTATAGCTTAACCCATAGGG+TGG | + | tig0022022:31031-31050 | None:intergenic | 40.0% | |
| ! | TAGCTGTTGATTGGATGAGA+GGG | + | tig0022022:31151-31170 | None:intergenic | 40.0% |
| ! | ATAGCTGTTGATTGGATGAG+AGG | + | tig0022022:31152-31171 | None:intergenic | 40.0% |
| TCTCATCCAATCAACAGCTA+TGG | - | tig0022022:31151-31170 | Msa1396330:intron | 40.0% | |
| TGATGACCATAGCTGTTGAT+TGG | + | tig0022022:31160-31179 | None:intergenic | 40.0% | |
| GACAAAGCTATACAATGTGG+AGG | - | tig0022022:31224-31243 | Msa1396330:CDS | 40.0% | |
| GTGCTTAATGTAAGGGAAAG+TGG | - | tig0022022:31285-31304 | Msa1396330:intron | 40.0% | |
| GCTTAATGTAAGGGAAAGTG+GGG | - | tig0022022:31287-31306 | Msa1396330:intron | 40.0% | |
| CTTAATGTAAGGGAAAGTGG+GGG | - | tig0022022:31288-31307 | Msa1396330:intron | 40.0% | |
| !! | ATATGGTGTAGTTTGCTTGC+TGG | - | tig0022022:31533-31552 | Msa1396330:five_prime_UTR | 40.0% |
| ! | GCAGAGCATTACAATGCTAT+TGG | + | tig0022022:31660-31679 | None:intergenic | 40.0% |
| TCTAAGTGGGGTGTGTTTGT+TGG | + | tig0022022:29432-29451 | None:intergenic | 45.0% | |
| ! | TTGGTACGTAGCTAGCTTAG+TGG | + | tig0022022:29484-29503 | None:intergenic | 45.0% |
| ! | TGTTGATCAGCAGCTGGTTT+GGG | + | tig0022022:29532-29551 | None:intergenic | 45.0% |
| TTGTTGATCAGCAGCTGGTT+TGG | + | tig0022022:29533-29552 | None:intergenic | 45.0% | |
| ! | TTGAGTGTTTCTAATCCGGG+AGG | + | tig0022022:29559-29578 | None:intergenic | 45.0% |
| AAAGTCTTGATCCACTGCGA+CGG | - | tig0022022:29728-29747 | Msa1396330:three_prime_UTR | 45.0% | |
| ATAGACACACACACACACCA+TGG | - | tig0022022:29802-29821 | Msa1396330:CDS | 45.0% | |
| TCCGTGACAATCATAACGGT+TGG | + | tig0022022:30420-30439 | None:intergenic | 45.0% | |
| CAGCACAAGGTTACAGTTAC+TGG | - | tig0022022:30476-30495 | Msa1396330:CDS | 45.0% | |
| ! | TTCTTCTCAGGAGGCTTTTC+TGG | + | tig0022022:30566-30585 | None:intergenic | 45.0% |
| GATGCAATTGCAGGTGATGA+TGG | - | tig0022022:30704-30723 | Msa1396330:intron | 45.0% | |
| GGGTGTGGATAGTACATATG+TGG | + | tig0022022:30992-31011 | None:intergenic | 45.0% | |
| !! | GTGTAGTTTGCTTGCTGGTA+TGG | - | tig0022022:31538-31557 | Msa1396330:five_prime_UTR | 45.0% |
| !! | TAGTTTGCTTGCTGGTATGG+TGG | - | tig0022022:31541-31560 | Msa1396330:five_prime_UTR | 45.0% |
| ! | AGTTTGCTTGCTGGTATGGT+GGG | - | tig0022022:31542-31561 | Msa1396330:five_prime_UTR | 45.0% |
| ! | ACGTAGCTAGCTTAGTGGAG+TGG | + | tig0022022:29479-29498 | None:intergenic | 50.0% |
| !! | GGAACTTGTTGATCAGCAGC+TGG | + | tig0022022:29538-29557 | None:intergenic | 50.0% |
| GCTGATCAACAAGTTCCTCC+CGG | - | tig0022022:29541-29560 | Msa1396330:three_prime_UTR | 50.0% | |
| !! | ATGGTTCTGAATTGCGACCG+CGG | - | tig0022022:29821-29840 | Msa1396330:CDS | 50.0% |
| ! | GCGGACTACAACCGCAATTA+TGG | + | tig0022022:29939-29958 | None:intergenic | 50.0% |
| GGTTACAGTTACTGGCAACG+TGG | - | tig0022022:30484-30503 | Msa1396330:CDS | 50.0% | |
| GGGTTATAAGCATGCTGCTG+AGG | + | tig0022022:30962-30981 | None:intergenic | 50.0% | |
| TAGCATGCATGGGCATGACA+GGG | + | tig0022022:31099-31118 | None:intergenic | 50.0% | |
| TTAGCATGCATGGGCATGAC+AGG | + | tig0022022:31100-31119 | None:intergenic | 50.0% | |
| TTGATTGGATGAGAGGGTGG+AGG | + | tig0022022:31145-31164 | None:intergenic | 50.0% | |
| ! | CTGTTGATTGGATGAGAGGG+TGG | + | tig0022022:31148-31167 | None:intergenic | 50.0% |
| ! | TTTTTGTGCAGCCGTCGCAG+TGG | + | tig0022022:29742-29761 | None:intergenic | 55.0% |
| GCGGTCGCAATTCAGAACCA+TGG | + | tig0022022:29822-29841 | None:intergenic | 55.0% | |
| ! | AGTAGTGTCTTGGCGGGTCT+TGG | - | tig0022022:30098-30117 | Msa1396330:CDS | 55.0% |
| !! | TGCTGCTGAGGAAGTACTGG+AGG | + | tig0022022:30950-30969 | None:intergenic | 55.0% |
| ! | GCATGCTGCTGAGGAAGTAC+TGG | + | tig0022022:30953-30972 | None:intergenic | 55.0% |
| CAGCAGTAGCACCACCCTAT+GGG | - | tig0022022:31017-31036 | Msa1396330:intron | 55.0% | |
| AGCATGCATGGGCATGACAG+GGG | + | tig0022022:31098-31117 | None:intergenic | 55.0% | |
| ATTGGATGAGAGGGTGGAGG+AGG | + | tig0022022:31142-31161 | None:intergenic | 55.0% | |
| !! | GTGGTGCTACTGCTGGAGGA+GGG | + | tig0022022:31012-31031 | None:intergenic | 60.0% |
| !! | TAGGGTGGTGCTACTGCTGG+AGG | + | tig0022022:31016-31035 | None:intergenic | 60.0% |
| !! | CCATAGGGTGGTGCTACTGC+TGG | + | tig0022022:31019-31038 | None:intergenic | 60.0% |
| CCAGCAGTAGCACCACCCTA+TGG | - | tig0022022:31016-31035 | Msa1396330:intron | 60.0% | |
| GCTACTGCTGGAGGAGGGTG+TGG | + | tig0022022:31007-31026 | None:intergenic | 65.0% | |
| !! | GGTGGTGCTACTGCTGGAGG+AGG | + | tig0022022:31013-31032 | None:intergenic | 65.0% |
| GAGAGGGTGGAGGAGGTGGA+GGG | + | tig0022022:31135-31154 | None:intergenic | 65.0% | |
| TGAGAGGGTGGAGGAGGTGG+AGG | + | tig0022022:31136-31155 | None:intergenic | 65.0% | |
| GGATGAGAGGGTGGAGGAGG+TGG | + | tig0022022:31139-31158 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022022 | gene | 29260 | 31738 | 29260 | ID=Msa1396330;Name=Msa1396330 |
| tig0022022 | mRNA | 29260 | 31738 | 29260 | ID=Msa1396330-mRNA-1;Parent=Msa1396330;Name=Msa1396330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=260|1|1|1|1|1|3|513|306 |
| tig0022022 | exon | 29260 | 30551 | 29260 | ID=Msa1396330-mRNA-1:exon:15511;Parent=Msa1396330-mRNA-1 |
| tig0022022 | exon | 31207 | 31282 | 31207 | ID=Msa1396330-mRNA-1:exon:15510;Parent=Msa1396330-mRNA-1 |
| tig0022022 | exon | 31413 | 31738 | 31413 | ID=Msa1396330-mRNA-1:exon:15509;Parent=Msa1396330-mRNA-1 |
| tig0022022 | five_prime_UTR | 31479 | 31738 | 31479 | ID=Msa1396330-mRNA-1:five_prime_utr;Parent=Msa1396330-mRNA-1 |
| tig0022022 | CDS | 31413 | 31478 | 31413 | ID=Msa1396330-mRNA-1:cds;Parent=Msa1396330-mRNA-1 |
| tig0022022 | CDS | 31207 | 31282 | 31207 | ID=Msa1396330-mRNA-1:cds;Parent=Msa1396330-mRNA-1 |
| tig0022022 | CDS | 29773 | 30551 | 29773 | ID=Msa1396330-mRNA-1:cds;Parent=Msa1396330-mRNA-1 |
| tig0022022 | three_prime_UTR | 29260 | 29772 | 29260 | ID=Msa1396330-mRNA-1:three_prime_utr;Parent=Msa1396330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
