Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091120 | XP_003621056.2 | 94.048 | 84 | 5 | 0 | 1 | 84 | 6 | 89 | 1.65e-48 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091120 | sp|Q93WI9|HD3A_ORYSJ | 66.265 | 83 | 27 | 1 | 2 | 84 | 9 | 90 | 1.30e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091120 | F8T7T2 | 94.048 | 84 | 5 | 0 | 1 | 84 | 6 | 89 | 7.89e-49 | 161 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1004630 | Msa1091120 | 0.836409 | 9.519267e-57 | -8.615850e-47 |
| Msa1046980 | Msa1091120 | 0.812344 | 4.444587e-51 | -8.615850e-47 |
| Msa1091120 | Msa1091130 | 0.824721 | 6.924884e-54 | -8.615850e-47 |
| Msa1091120 | Msa1134480 | 0.802991 | 4.314305e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091120 | MtrunA17_Chr7g0214761 | 94.048 | 84 | 5 | 0 | 1 | 84 | 6 | 89 | 1.52e-52 | 161 |
| Msa1091120 | MtrunA17_Chr7g0214771 | 84.337 | 83 | 13 | 0 | 2 | 84 | 7 | 89 | 7.13e-46 | 144 |
| Msa1091120 | MtrunA17_Chr6g0461711 | 73.494 | 83 | 21 | 1 | 2 | 84 | 7 | 88 | 1.68e-38 | 125 |
| Msa1091120 | MtrunA17_Chr7g0252784 | 73.494 | 83 | 21 | 1 | 2 | 84 | 7 | 88 | 4.72e-37 | 122 |
| Msa1091120 | MtrunA17_Chr7g0252811 | 70.130 | 77 | 22 | 1 | 8 | 84 | 35 | 110 | 1.20e-33 | 114 |
| Msa1091120 | MtrunA17_Chr7g0252800 | 63.855 | 83 | 29 | 1 | 2 | 84 | 8 | 89 | 2.31e-31 | 107 |
| Msa1091120 | MtrunA17_Chr6g0472451 | 54.762 | 84 | 37 | 1 | 1 | 84 | 5 | 87 | 4.31e-28 | 99.4 |
| Msa1091120 | MtrunA17_Chr1g0178751 | 51.807 | 83 | 39 | 1 | 2 | 84 | 7 | 88 | 1.15e-27 | 98.6 |
| Msa1091120 | MtrunA17_Chr7g0266201 | 54.217 | 83 | 37 | 1 | 2 | 84 | 7 | 88 | 9.58e-27 | 95.9 |
| Msa1091120 | MtrunA17_Chr2g0321301 | 49.398 | 83 | 41 | 1 | 2 | 84 | 6 | 87 | 3.43e-26 | 94.7 |
| Msa1091120 | MtrunA17_Chr8g0392741 | 53.571 | 84 | 37 | 2 | 1 | 84 | 6 | 87 | 2.33e-22 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091120 | AT1G65480.1 | 63.855 | 83 | 29 | 1 | 2 | 84 | 7 | 88 | 1.70e-34 | 116 |
| Msa1091120 | AT1G65480.2 | 63.855 | 83 | 29 | 1 | 2 | 84 | 51 | 132 | 2.19e-34 | 117 |
| Msa1091120 | AT5G62040.1 | 59.524 | 84 | 34 | 0 | 1 | 84 | 5 | 88 | 3.88e-34 | 115 |
| Msa1091120 | AT4G20370.1 | 65.060 | 83 | 28 | 1 | 2 | 84 | 7 | 88 | 4.17e-33 | 112 |
| Msa1091120 | AT5G03840.1 | 51.190 | 84 | 40 | 1 | 1 | 84 | 9 | 91 | 2.64e-26 | 95.5 |
| Msa1091120 | AT2G27550.1 | 51.807 | 83 | 40 | 0 | 2 | 84 | 7 | 89 | 1.18e-25 | 93.6 |
| Msa1091120 | AT1G18100.1 | 55.952 | 84 | 35 | 2 | 1 | 84 | 5 | 86 | 1.53e-24 | 90.9 |
Find 32 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGTATTCCCTCATATT+AGG | 0.216132 | 7_3:+6404283 | None:intergenic |
| CTTGTGGTTTGTGGTGTAAT+TGG | 0.261555 | 7_3:-6405872 | Msa1091120:CDS |
| TTGCTAGGGCTTGGTCCATC+AGG | 0.306220 | 7_3:+6404307 | None:intergenic |
| TGGTGTAATTGGAGATGTTT+TGG | 0.321102 | 7_3:-6405861 | Msa1091120:CDS |
| GCAGGTATTCCCTCATATTA+GGG | 0.362646 | 7_3:+6404284 | None:intergenic |
| CCCTCATATTAGGGTTGCTA+GGG | 0.374720 | 7_3:+6404293 | None:intergenic |
| ATATTAGGGTTGCTAGGGCT+TGG | 0.390387 | 7_3:+6404298 | None:intergenic |
| TTACAAATTCAGTGTCTTTG+AGG | 0.412870 | 7_3:-6405832 | Msa1091120:CDS |
| ATGAATCCTCTTGTGGTTTG+TGG | 0.422228 | 7_3:-6405881 | Msa1091120:CDS |
| GCCCTAGCAACCCTAATATG+AGG | 0.433466 | 7_3:-6404294 | Msa1091120:CDS |
| TACAAATTCAGTGTCTTTGA+GGG | 0.441798 | 7_3:-6405831 | Msa1091120:CDS |
| CACCAACTTGAACTCTTGGT+TGG | 0.442454 | 7_3:+6405744 | None:intergenic |
| TGTCCACCAACTTGAACTCT+TGG | 0.448736 | 7_3:+6405740 | None:intergenic |
| AAAGACACTGAATTTGTAAA+GGG | 0.449639 | 7_3:+6405836 | None:intergenic |
| CAAAGACACTGAATTTGTAA+AGG | 0.477373 | 7_3:+6405835 | None:intergenic |
| TCCCTCATATTAGGGTTGCT+AGG | 0.481348 | 7_3:+6404292 | None:intergenic |
| TGCTAGGGCTTGGTCCATCA+GGG | 0.485165 | 7_3:+6404308 | None:intergenic |
| TAAATCAATGAATCCTCTTG+TGG | 0.504712 | 7_3:-6405888 | None:intergenic |
| AACTTCCTACTTACCAATGC+AGG | 0.524098 | 7_3:+6404266 | None:intergenic |
| ATATGAGGGAATACCTGCAT+TGG | 0.531611 | 7_3:-6404279 | Msa1091120:CDS |
| AAGTTGGTGGACATGACCTC+AGG | 0.539063 | 7_3:-6405730 | Msa1091120:CDS |
| GGTTGGTTGACTATCTGAGA+GGG | 0.539901 | 7_3:+6405761 | None:intergenic |
| CAGGTGATGGTGGACCCTGA+TGG | 0.543435 | 7_3:-6404322 | Msa1091120:CDS |
| CAACCAAGAGTTCAAGTTGG+TGG | 0.573770 | 7_3:-6405743 | Msa1091120:CDS |
| CCCTAGCAACCCTAATATGA+GGG | 0.588503 | 7_3:-6404293 | Msa1091120:CDS |
| TGGTTGGTTGACTATCTGAG+AGG | 0.609629 | 7_3:+6405760 | None:intergenic |
| ATTACACCACAAACCACAAG+AGG | 0.610357 | 7_3:+6405875 | None:intergenic |
| CCTCAGGACTCTATACACTC+TGG | 0.640356 | 7_3:-6405714 | Msa1091120:intron |
| AACCAACCAAGAGTTCAAGT+TGG | 0.659781 | 7_3:-6405746 | Msa1091120:CDS |
| AACAAAGAAGTCAACAACGG+TGG | 0.701619 | 7_3:-6405794 | Msa1091120:CDS |
| AATAACAAAGAAGTCAACAA+CGG | 0.709279 | 7_3:-6405797 | Msa1091120:CDS |
| CCAGAGTGTATAGAGTCCTG+AGG | 0.732541 | 7_3:+6405714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTGTAAAGTTATAAA+GGG | + | chr7_3:6405488-6405507 | None:intergenic | 10.0% |
| !! | AATTTATTGTAAAGTTATAA+AGG | + | chr7_3:6405489-6405508 | None:intergenic | 10.0% |
| !! | CTTTACAATAAATTATAAAT+AGG | - | chr7_3:6405495-6405514 | Msa1091120:intron | 10.0% |
| !! | ATTTATTGTAAAGTTATAAA+GGG | + | chr7_3:6405488-6405507 | None:intergenic | 10.0% |
| !! | AATTTATTGTAAAGTTATAA+AGG | + | chr7_3:6405489-6405508 | None:intergenic | 10.0% |
| !! | CTTTACAATAAATTATAAAT+AGG | - | chr7_3:6405495-6405514 | Msa1091120:intron | 10.0% |
| !!! | TAAAATATTTTGTTTGAAGA+TGG | - | chr7_3:6405008-6405027 | Msa1091120:intron | 15.0% |
| !!! | TAAAATATTTTGTTTGAAGA+TGG | - | chr7_3:6405008-6405027 | Msa1091120:intron | 15.0% |
| !! | TCAAAAGTTACTTAAATTTG+TGG | - | chr7_3:6404721-6404740 | Msa1091120:intron | 20.0% |
| !! | AAATTGTTTGAAAAGTCATT+TGG | - | chr7_3:6404802-6404821 | Msa1091120:intron | 20.0% |
| !!! | ATGATTTCTTTTGATTTTGA+CGG | - | chr7_3:6405425-6405444 | Msa1091120:intron | 20.0% |
| !! | AGAAATGACTTAAATTCTAA+TGG | + | chr7_3:6405560-6405579 | None:intergenic | 20.0% |
| !! | TAGAATTTAAGTCATTTCTT+AGG | - | chr7_3:6405561-6405580 | Msa1091120:intron | 20.0% |
| !! | AGAATTTAAGTCATTTCTTA+GGG | - | chr7_3:6405562-6405581 | Msa1091120:intron | 20.0% |
| !!! | CTTATTTTTAGGACATAAAA+CGG | - | chr7_3:6405629-6405648 | Msa1091120:intron | 20.0% |
| !! | TTTAATTCGTATAGAAGAAA+AGG | + | chr7_3:6405696-6405715 | None:intergenic | 20.0% |
| !! | TCAAAAGTTACTTAAATTTG+TGG | - | chr7_3:6404721-6404740 | Msa1091120:intron | 20.0% |
| !! | AAATTGTTTGAAAAGTCATT+TGG | - | chr7_3:6404802-6404821 | Msa1091120:intron | 20.0% |
| !!! | ATGATTTCTTTTGATTTTGA+CGG | - | chr7_3:6405425-6405444 | Msa1091120:intron | 20.0% |
| !! | AGAAATGACTTAAATTCTAA+TGG | + | chr7_3:6405560-6405579 | None:intergenic | 20.0% |
| !! | TAGAATTTAAGTCATTTCTT+AGG | - | chr7_3:6405561-6405580 | Msa1091120:intron | 20.0% |
| !! | AGAATTTAAGTCATTTCTTA+GGG | - | chr7_3:6405562-6405581 | Msa1091120:intron | 20.0% |
| !!! | CTTATTTTTAGGACATAAAA+CGG | - | chr7_3:6405629-6405648 | Msa1091120:intron | 20.0% |
| !! | TTTAATTCGTATAGAAGAAA+AGG | + | chr7_3:6405696-6405715 | None:intergenic | 20.0% |
| ! | AAAGACACTGAATTTGTAAA+GGG | + | chr7_3:6404324-6404343 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGTCAACAA+CGG | - | chr7_3:6404360-6404379 | Msa1091120:intron | 25.0% |
| !!! | AGTAACTTTTGAAATACAGA+TGG | + | chr7_3:6404625-6404644 | None:intergenic | 25.0% |
| ! | CATTTGGCATAATAATATGT+CGG | - | chr7_3:6404818-6404837 | Msa1091120:intron | 25.0% |
| ! | CTTTAGTGATTGAAATTTCA+GGG | + | chr7_3:6404889-6404908 | None:intergenic | 25.0% |
| ! | ACTTTAGTGATTGAAATTTC+AGG | + | chr7_3:6404890-6404909 | None:intergenic | 25.0% |
| ! | ATTTACTTCATCGATAATCA+AGG | - | chr7_3:6404913-6404932 | Msa1091120:intron | 25.0% |
| !! | TTCTCATCATCAATATGTTT+TGG | - | chr7_3:6405183-6405202 | Msa1091120:intron | 25.0% |
| ! | TTGATGTTTATTGGATGTAA+GGG | + | chr7_3:6405327-6405346 | None:intergenic | 25.0% |
| ! | TTTGATGTTTATTGGATGTA+AGG | + | chr7_3:6405328-6405347 | None:intergenic | 25.0% |
| !!! | TGAGAGATTTTGATGTTTAT+TGG | + | chr7_3:6405336-6405355 | None:intergenic | 25.0% |
| ! | CATAAAACATGTCTAATGAT+AGG | - | chr7_3:6405354-6405373 | Msa1091120:intron | 25.0% |
| ! | TATACGAATTAAACCTAATG+AGG | - | chr7_3:6405703-6405722 | Msa1091120:intron | 25.0% |
| !! | GATTAAAGCTTTTCTTTCTA+AGG | - | chr7_3:6405790-6405809 | Msa1091120:CDS | 25.0% |
| ! | AAAGACACTGAATTTGTAAA+GGG | + | chr7_3:6404324-6404343 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGTCAACAA+CGG | - | chr7_3:6404360-6404379 | Msa1091120:intron | 25.0% |
| !!! | AGTAACTTTTGAAATACAGA+TGG | + | chr7_3:6404625-6404644 | None:intergenic | 25.0% |
| ! | CATTTGGCATAATAATATGT+CGG | - | chr7_3:6404818-6404837 | Msa1091120:intron | 25.0% |
| ! | CTTTAGTGATTGAAATTTCA+GGG | + | chr7_3:6404889-6404908 | None:intergenic | 25.0% |
| ! | ACTTTAGTGATTGAAATTTC+AGG | + | chr7_3:6404890-6404909 | None:intergenic | 25.0% |
| ! | ATTTACTTCATCGATAATCA+AGG | - | chr7_3:6404913-6404932 | Msa1091120:intron | 25.0% |
| !! | TTCTCATCATCAATATGTTT+TGG | - | chr7_3:6405183-6405202 | Msa1091120:intron | 25.0% |
| ! | TTGATGTTTATTGGATGTAA+GGG | + | chr7_3:6405327-6405346 | None:intergenic | 25.0% |
| ! | TTTGATGTTTATTGGATGTA+AGG | + | chr7_3:6405328-6405347 | None:intergenic | 25.0% |
| !!! | TGAGAGATTTTGATGTTTAT+TGG | + | chr7_3:6405336-6405355 | None:intergenic | 25.0% |
| ! | CATAAAACATGTCTAATGAT+AGG | - | chr7_3:6405354-6405373 | Msa1091120:intron | 25.0% |
| ! | TATACGAATTAAACCTAATG+AGG | - | chr7_3:6405703-6405722 | Msa1091120:intron | 25.0% |
| !! | GATTAAAGCTTTTCTTTCTA+AGG | - | chr7_3:6405790-6405809 | Msa1091120:CDS | 25.0% |
| CAAAGACACTGAATTTGTAA+AGG | + | chr7_3:6404325-6404344 | None:intergenic | 30.0% | |
| TTACAAATTCAGTGTCTTTG+AGG | - | chr7_3:6404325-6404344 | Msa1091120:intron | 30.0% | |
| TACAAATTCAGTGTCTTTGA+GGG | - | chr7_3:6404326-6404345 | Msa1091120:intron | 30.0% | |
| ! | TGATCTTCAATTTTACACCA+TGG | - | chr7_3:6404506-6404525 | Msa1091120:intron | 30.0% |
| ! | GATCTTCAATTTTACACCAT+GGG | - | chr7_3:6404507-6404526 | Msa1091120:intron | 30.0% |
| !!! | AACTTTTGAAATACAGATGG+TGG | + | chr7_3:6404622-6404641 | None:intergenic | 30.0% |
| TTAAATACACATCTAGCACA+AGG | - | chr7_3:6404686-6404705 | Msa1091120:intron | 30.0% | |
| TTTAAATTGTTGCCTCACAA+GGG | + | chr7_3:6404778-6404797 | None:intergenic | 30.0% | |
| ATTTAAATTGTTGCCTCACA+AGG | + | chr7_3:6404779-6404798 | None:intergenic | 30.0% | |
| !! | AGATGTGAATTTTGCTACTT+CGG | + | chr7_3:6404844-6404863 | None:intergenic | 30.0% |
| !!! | GGTTGTTTTTGAGATTTTAG+TGG | - | chr7_3:6404934-6404953 | Msa1091120:intron | 30.0% |
| !! | TCATCATCAATATGTTTTGG+TGG | - | chr7_3:6405186-6405205 | Msa1091120:intron | 30.0% |
| !!! | CATCATCAATATGTTTTGGT+GGG | - | chr7_3:6405187-6405206 | Msa1091120:intron | 30.0% |
| ! | TTTGAAAAATCAGCGCTTTT+AGG | + | chr7_3:6405215-6405234 | None:intergenic | 30.0% |
| !!! | AAAAGCGCTGATTTTTCAAA+TGG | - | chr7_3:6405215-6405234 | Msa1091120:intron | 30.0% |
| ! | ACCTACAACTTTTCCAAATA+AGG | - | chr7_3:6405394-6405413 | Msa1091120:intron | 30.0% |
| ! | CCTACAACTTTTCCAAATAA+GGG | - | chr7_3:6405395-6405414 | Msa1091120:intron | 30.0% |
| ! | CTACAACTTTTCCAAATAAG+GGG | - | chr7_3:6405396-6405415 | Msa1091120:intron | 30.0% |
| ! | AAGACGTTGTTGTTAGTAAT+AGG | + | chr7_3:6405537-6405556 | None:intergenic | 30.0% |
| CGTATAGAAGAAAAGGTTAT+TGG | + | chr7_3:6405689-6405708 | None:intergenic | 30.0% | |
| TGTTAAGAATGATCCTCATT+AGG | + | chr7_3:6405719-6405738 | None:intergenic | 30.0% | |
| ! | TTCTAAGGATCTTGAATATG+TGG | - | chr7_3:6405805-6405824 | Msa1091120:CDS | 30.0% |
| ! | TTGAATATGTGGCATTTTTC+AGG | - | chr7_3:6405816-6405835 | Msa1091120:CDS | 30.0% |
| CAAAGACACTGAATTTGTAA+AGG | + | chr7_3:6404325-6404344 | None:intergenic | 30.0% | |
| TTACAAATTCAGTGTCTTTG+AGG | - | chr7_3:6404325-6404344 | Msa1091120:intron | 30.0% | |
| TACAAATTCAGTGTCTTTGA+GGG | - | chr7_3:6404326-6404345 | Msa1091120:intron | 30.0% | |
| ! | TGATCTTCAATTTTACACCA+TGG | - | chr7_3:6404506-6404525 | Msa1091120:intron | 30.0% |
| ! | GATCTTCAATTTTACACCAT+GGG | - | chr7_3:6404507-6404526 | Msa1091120:intron | 30.0% |
| !!! | AACTTTTGAAATACAGATGG+TGG | + | chr7_3:6404622-6404641 | None:intergenic | 30.0% |
| TTAAATACACATCTAGCACA+AGG | - | chr7_3:6404686-6404705 | Msa1091120:intron | 30.0% | |
| TTTAAATTGTTGCCTCACAA+GGG | + | chr7_3:6404778-6404797 | None:intergenic | 30.0% | |
| ATTTAAATTGTTGCCTCACA+AGG | + | chr7_3:6404779-6404798 | None:intergenic | 30.0% | |
| !! | AGATGTGAATTTTGCTACTT+CGG | + | chr7_3:6404844-6404863 | None:intergenic | 30.0% |
| !!! | GGTTGTTTTTGAGATTTTAG+TGG | - | chr7_3:6404934-6404953 | Msa1091120:intron | 30.0% |
| !! | TCATCATCAATATGTTTTGG+TGG | - | chr7_3:6405186-6405205 | Msa1091120:intron | 30.0% |
| !!! | CATCATCAATATGTTTTGGT+GGG | - | chr7_3:6405187-6405206 | Msa1091120:intron | 30.0% |
| ! | TTTGAAAAATCAGCGCTTTT+AGG | + | chr7_3:6405215-6405234 | None:intergenic | 30.0% |
| !!! | AAAAGCGCTGATTTTTCAAA+TGG | - | chr7_3:6405215-6405234 | Msa1091120:intron | 30.0% |
| ! | ACCTACAACTTTTCCAAATA+AGG | - | chr7_3:6405394-6405413 | Msa1091120:intron | 30.0% |
| ! | CCTACAACTTTTCCAAATAA+GGG | - | chr7_3:6405395-6405414 | Msa1091120:intron | 30.0% |
| ! | CTACAACTTTTCCAAATAAG+GGG | - | chr7_3:6405396-6405415 | Msa1091120:intron | 30.0% |
| ! | AAGACGTTGTTGTTAGTAAT+AGG | + | chr7_3:6405537-6405556 | None:intergenic | 30.0% |
| CGTATAGAAGAAAAGGTTAT+TGG | + | chr7_3:6405689-6405708 | None:intergenic | 30.0% | |
| TGTTAAGAATGATCCTCATT+AGG | + | chr7_3:6405719-6405738 | None:intergenic | 30.0% | |
| ! | TTCTAAGGATCTTGAATATG+TGG | - | chr7_3:6405805-6405824 | Msa1091120:CDS | 30.0% |
| ! | TTGAATATGTGGCATTTTTC+AGG | - | chr7_3:6405816-6405835 | Msa1091120:CDS | 30.0% |
| ! | TGGTGTAATTGGAGATGTTT+TGG | - | chr7_3:6404296-6404315 | Msa1091120:CDS | 35.0% |
| TTTACACCATGGGTAATTCA+TGG | - | chr7_3:6404517-6404536 | Msa1091120:intron | 35.0% | |
| TTACACCATGGGTAATTCAT+GGG | - | chr7_3:6404518-6404537 | Msa1091120:intron | 35.0% | |
| ! | ATTTTCCCATGAATTACCCA+TGG | + | chr7_3:6404526-6404545 | None:intergenic | 35.0% |
| AAAAGTTACTAACGAGCACA+AGG | - | chr7_3:6404635-6404654 | Msa1091120:intron | 35.0% | |
| TTAAATTGTTGCCTCACAAG+GGG | + | chr7_3:6404777-6404796 | None:intergenic | 35.0% | |
| CCAAAATGTAAATTCGCTCT+TGG | + | chr7_3:6404960-6404979 | None:intergenic | 35.0% | |
| ! | CCAAGAGCGAATTTACATTT+TGG | - | chr7_3:6404957-6404976 | Msa1091120:intron | 35.0% |
| AAGAAGAGTCACTCTATCTA+AGG | - | chr7_3:6405241-6405260 | Msa1091120:intron | 35.0% | |
| CACTCTATCTAAGGATAACA+TGG | - | chr7_3:6405250-6405269 | Msa1091120:intron | 35.0% | |
| ! | CCCTTATTTGGAAAAGTTGT+AGG | + | chr7_3:6405398-6405417 | None:intergenic | 35.0% |
| ATCATCATACACCCCTTATT+TGG | + | chr7_3:6405410-6405429 | None:intergenic | 35.0% | |
| !!! | TTGATTTTGACGGAAGTGTT+TGG | - | chr7_3:6405435-6405454 | Msa1091120:intron | 35.0% |
| !!! | TGATTTTGACGGAAGTGTTT+GGG | - | chr7_3:6405436-6405455 | Msa1091120:intron | 35.0% |
| !!! | GAAACCCTGTACTTTTTTGT+CGG | - | chr7_3:6405591-6405610 | Msa1091120:intron | 35.0% |
| TATTGGTATTGTCGTATCTG+AGG | + | chr7_3:6405672-6405691 | None:intergenic | 35.0% | |
| AAGAATGACATCACCATAGA+AGG | - | chr7_3:6405750-6405769 | Msa1091120:CDS | 35.0% | |
| AGAATGACATCACCATAGAA+GGG | - | chr7_3:6405751-6405770 | Msa1091120:CDS | 35.0% | |
| ! | GAAAATTTTGTCCCCTTCTA+TGG | + | chr7_3:6405766-6405785 | None:intergenic | 35.0% |
| ! | TGGTGTAATTGGAGATGTTT+TGG | - | chr7_3:6404296-6404315 | Msa1091120:CDS | 35.0% |
| TTTACACCATGGGTAATTCA+TGG | - | chr7_3:6404517-6404536 | Msa1091120:intron | 35.0% | |
| TTACACCATGGGTAATTCAT+GGG | - | chr7_3:6404518-6404537 | Msa1091120:intron | 35.0% | |
| ! | ATTTTCCCATGAATTACCCA+TGG | + | chr7_3:6404526-6404545 | None:intergenic | 35.0% |
| AAAAGTTACTAACGAGCACA+AGG | - | chr7_3:6404635-6404654 | Msa1091120:intron | 35.0% | |
| TTAAATTGTTGCCTCACAAG+GGG | + | chr7_3:6404777-6404796 | None:intergenic | 35.0% | |
| CCAAAATGTAAATTCGCTCT+TGG | + | chr7_3:6404960-6404979 | None:intergenic | 35.0% | |
| ! | CCAAGAGCGAATTTACATTT+TGG | - | chr7_3:6404957-6404976 | Msa1091120:intron | 35.0% |
| AAGAAGAGTCACTCTATCTA+AGG | - | chr7_3:6405241-6405260 | Msa1091120:intron | 35.0% | |
| CACTCTATCTAAGGATAACA+TGG | - | chr7_3:6405250-6405269 | Msa1091120:intron | 35.0% | |
| ! | CCCTTATTTGGAAAAGTTGT+AGG | + | chr7_3:6405398-6405417 | None:intergenic | 35.0% |
| ATCATCATACACCCCTTATT+TGG | + | chr7_3:6405410-6405429 | None:intergenic | 35.0% | |
| !!! | TTGATTTTGACGGAAGTGTT+TGG | - | chr7_3:6405435-6405454 | Msa1091120:intron | 35.0% |
| !!! | TGATTTTGACGGAAGTGTTT+GGG | - | chr7_3:6405436-6405455 | Msa1091120:intron | 35.0% |
| !!! | GAAACCCTGTACTTTTTTGT+CGG | - | chr7_3:6405591-6405610 | Msa1091120:intron | 35.0% |
| TATTGGTATTGTCGTATCTG+AGG | + | chr7_3:6405672-6405691 | None:intergenic | 35.0% | |
| AAGAATGACATCACCATAGA+AGG | - | chr7_3:6405750-6405769 | Msa1091120:CDS | 35.0% | |
| AGAATGACATCACCATAGAA+GGG | - | chr7_3:6405751-6405770 | Msa1091120:CDS | 35.0% | |
| ! | GAAAATTTTGTCCCCTTCTA+TGG | + | chr7_3:6405766-6405785 | None:intergenic | 35.0% |
| ATGAATCCTCTTGTGGTTTG+TGG | - | chr7_3:6404276-6404295 | Msa1091120:CDS | 40.0% | |
| ATTACACCACAAACCACAAG+AGG | + | chr7_3:6404285-6404304 | None:intergenic | 40.0% | |
| ! | CTTGTGGTTTGTGGTGTAAT+TGG | - | chr7_3:6404285-6404304 | Msa1091120:CDS | 40.0% |
| AACAAAGAAGTCAACAACGG+TGG | - | chr7_3:6404363-6404382 | Msa1091120:intron | 40.0% | |
| AACCAACCAAGAGTTCAAGT+TGG | - | chr7_3:6404411-6404430 | Msa1091120:intron | 40.0% | |
| CTAATTAACCGTGTGGGTAA+AGG | + | chr7_3:6404591-6404610 | None:intergenic | 40.0% | |
| ! | GACTCCGACAAAAAAGTACA+GGG | + | chr7_3:6405598-6405617 | None:intergenic | 40.0% |
| ! | AGACTCCGACAAAAAAGTAC+AGG | + | chr7_3:6405599-6405618 | None:intergenic | 40.0% |
| GAATGACATCACCATAGAAG+GGG | - | chr7_3:6405752-6405771 | Msa1091120:CDS | 40.0% | |
| !!! | ATGTGGCATTTTTCAGGTGA+TGG | - | chr7_3:6405822-6405841 | Msa1091120:CDS | 40.0% |
| GCAGGTATTCCCTCATATTA+GGG | + | chr7_3:6405876-6405895 | None:intergenic | 40.0% | |
| TGCAGGTATTCCCTCATATT+AGG | + | chr7_3:6405877-6405896 | None:intergenic | 40.0% | |
| ATATGAGGGAATACCTGCAT+TGG | - | chr7_3:6405878-6405897 | Msa1091120:CDS | 40.0% | |
| ATGAATCCTCTTGTGGTTTG+TGG | - | chr7_3:6404276-6404295 | Msa1091120:CDS | 40.0% | |
| ATTACACCACAAACCACAAG+AGG | + | chr7_3:6404285-6404304 | None:intergenic | 40.0% | |
| ! | CTTGTGGTTTGTGGTGTAAT+TGG | - | chr7_3:6404285-6404304 | Msa1091120:CDS | 40.0% |
| AACAAAGAAGTCAACAACGG+TGG | - | chr7_3:6404363-6404382 | Msa1091120:intron | 40.0% | |
| AACCAACCAAGAGTTCAAGT+TGG | - | chr7_3:6404411-6404430 | Msa1091120:intron | 40.0% | |
| CTAATTAACCGTGTGGGTAA+AGG | + | chr7_3:6404591-6404610 | None:intergenic | 40.0% | |
| ! | GACTCCGACAAAAAAGTACA+GGG | + | chr7_3:6405598-6405617 | None:intergenic | 40.0% |
| ! | AGACTCCGACAAAAAAGTAC+AGG | + | chr7_3:6405599-6405618 | None:intergenic | 40.0% |
| GAATGACATCACCATAGAAG+GGG | - | chr7_3:6405752-6405771 | Msa1091120:CDS | 40.0% | |
| !!! | ATGTGGCATTTTTCAGGTGA+TGG | - | chr7_3:6405822-6405841 | Msa1091120:CDS | 40.0% |
| GCAGGTATTCCCTCATATTA+GGG | + | chr7_3:6405876-6405895 | None:intergenic | 40.0% | |
| TGCAGGTATTCCCTCATATT+AGG | + | chr7_3:6405877-6405896 | None:intergenic | 40.0% | |
| ATATGAGGGAATACCTGCAT+TGG | - | chr7_3:6405878-6405897 | Msa1091120:CDS | 40.0% | |
| ! | GGTTGGTTGACTATCTGAGA+GGG | + | chr7_3:6404399-6404418 | None:intergenic | 45.0% |
| ! | TGGTTGGTTGACTATCTGAG+AGG | + | chr7_3:6404400-6404419 | None:intergenic | 45.0% |
| CACCAACTTGAACTCTTGGT+TGG | + | chr7_3:6404416-6404435 | None:intergenic | 45.0% | |
| !! | CAACCAAGAGTTCAAGTTGG+TGG | - | chr7_3:6404414-6404433 | Msa1091120:intron | 45.0% |
| TGTCCACCAACTTGAACTCT+TGG | + | chr7_3:6404420-6404439 | None:intergenic | 45.0% | |
| AGGACTCTATACACTCTGGT+TGG | - | chr7_3:6404447-6404466 | Msa1091120:intron | 45.0% | |
| TCGTCGCTAATTAACCGTGT+GGG | + | chr7_3:6404597-6404616 | None:intergenic | 45.0% | |
| !! | TTTGACGGAAGTGTTTGGGA+TGG | - | chr7_3:6405440-6405459 | Msa1091120:intron | 45.0% |
| ! | GTATTGTCGTATCTGAGGCA+GGG | + | chr7_3:6405667-6405686 | None:intergenic | 45.0% |
| !!! | TGGCATTTTTCAGGTGATGG+TGG | - | chr7_3:6405825-6405844 | Msa1091120:CDS | 45.0% |
| ATATTAGGGTTGCTAGGGCT+TGG | + | chr7_3:6405862-6405881 | None:intergenic | 45.0% | |
| CCCTCATATTAGGGTTGCTA+GGG | + | chr7_3:6405867-6405886 | None:intergenic | 45.0% | |
| CCCTAGCAACCCTAATATGA+GGG | - | chr7_3:6405864-6405883 | Msa1091120:CDS | 45.0% | |
| TCCCTCATATTAGGGTTGCT+AGG | + | chr7_3:6405868-6405887 | None:intergenic | 45.0% | |
| ! | GGTTGGTTGACTATCTGAGA+GGG | + | chr7_3:6404399-6404418 | None:intergenic | 45.0% |
| ! | TGGTTGGTTGACTATCTGAG+AGG | + | chr7_3:6404400-6404419 | None:intergenic | 45.0% |
| CACCAACTTGAACTCTTGGT+TGG | + | chr7_3:6404416-6404435 | None:intergenic | 45.0% | |
| !! | CAACCAAGAGTTCAAGTTGG+TGG | - | chr7_3:6404414-6404433 | Msa1091120:intron | 45.0% |
| TGTCCACCAACTTGAACTCT+TGG | + | chr7_3:6404420-6404439 | None:intergenic | 45.0% | |
| AGGACTCTATACACTCTGGT+TGG | - | chr7_3:6404447-6404466 | Msa1091120:intron | 45.0% | |
| TCGTCGCTAATTAACCGTGT+GGG | + | chr7_3:6404597-6404616 | None:intergenic | 45.0% | |
| !! | TTTGACGGAAGTGTTTGGGA+TGG | - | chr7_3:6405440-6405459 | Msa1091120:intron | 45.0% |
| ! | GTATTGTCGTATCTGAGGCA+GGG | + | chr7_3:6405667-6405686 | None:intergenic | 45.0% |
| !!! | TGGCATTTTTCAGGTGATGG+TGG | - | chr7_3:6405825-6405844 | Msa1091120:CDS | 45.0% |
| ATATTAGGGTTGCTAGGGCT+TGG | + | chr7_3:6405862-6405881 | None:intergenic | 45.0% | |
| CCCTCATATTAGGGTTGCTA+GGG | + | chr7_3:6405867-6405886 | None:intergenic | 45.0% | |
| CCCTAGCAACCCTAATATGA+GGG | - | chr7_3:6405864-6405883 | Msa1091120:CDS | 45.0% | |
| TCCCTCATATTAGGGTTGCT+AGG | + | chr7_3:6405868-6405887 | None:intergenic | 45.0% | |
| !!! | TAAATTTAATACTTATTTTT+AGG | - | chr7_3:6405618-6405637 | Msa1091120:intron | 5.0% |
| !!! | TAAATTTAATACTTATTTTT+AGG | - | chr7_3:6405618-6405637 | Msa1091120:intron | 5.0% |
| !! | AAGTTGGTGGACATGACCTC+AGG | - | chr7_3:6404427-6404446 | Msa1091120:intron | 50.0% |
| CCAGAGTGTATAGAGTCCTG+AGG | + | chr7_3:6404446-6404465 | None:intergenic | 50.0% | |
| CCTCAGGACTCTATACACTC+TGG | - | chr7_3:6404443-6404462 | Msa1091120:intron | 50.0% | |
| ! | GTGGGTAAAGGTGCAGTGTT+GGG | + | chr7_3:6404579-6404598 | None:intergenic | 50.0% |
| ! | TGTGGGTAAAGGTGCAGTGT+TGG | + | chr7_3:6404580-6404599 | None:intergenic | 50.0% |
| ACACTGCACCTTTACCCACA+CGG | - | chr7_3:6404580-6404599 | Msa1091120:intron | 50.0% | |
| GTCGTCGCTAATTAACCGTG+TGG | + | chr7_3:6404598-6404617 | None:intergenic | 50.0% | |
| TACTAACGAGCACAAGGCAG+TGG | - | chr7_3:6404641-6404660 | Msa1091120:intron | 50.0% | |
| ACTAACGAGCACAAGGCAGT+GGG | - | chr7_3:6404642-6404661 | Msa1091120:intron | 50.0% | |
| !! | GAAGTGTTTGGGATGGTGGA+AGG | - | chr7_3:6405447-6405466 | Msa1091120:intron | 50.0% |
| !! | TTTGGGATGGTGGAAGGCTA+GGG | - | chr7_3:6405453-6405472 | Msa1091120:intron | 50.0% |
| ! | GGTATTGTCGTATCTGAGGC+AGG | + | chr7_3:6405668-6405687 | None:intergenic | 50.0% |
| GCCCTAGCAACCCTAATATG+AGG | - | chr7_3:6405863-6405882 | Msa1091120:CDS | 50.0% | |
| !! | AAGTTGGTGGACATGACCTC+AGG | - | chr7_3:6404427-6404446 | Msa1091120:intron | 50.0% |
| CCAGAGTGTATAGAGTCCTG+AGG | + | chr7_3:6404446-6404465 | None:intergenic | 50.0% | |
| CCTCAGGACTCTATACACTC+TGG | - | chr7_3:6404443-6404462 | Msa1091120:intron | 50.0% | |
| ! | GTGGGTAAAGGTGCAGTGTT+GGG | + | chr7_3:6404579-6404598 | None:intergenic | 50.0% |
| ! | TGTGGGTAAAGGTGCAGTGT+TGG | + | chr7_3:6404580-6404599 | None:intergenic | 50.0% |
| ACACTGCACCTTTACCCACA+CGG | - | chr7_3:6404580-6404599 | Msa1091120:intron | 50.0% | |
| GTCGTCGCTAATTAACCGTG+TGG | + | chr7_3:6404598-6404617 | None:intergenic | 50.0% | |
| TACTAACGAGCACAAGGCAG+TGG | - | chr7_3:6404641-6404660 | Msa1091120:intron | 50.0% | |
| ACTAACGAGCACAAGGCAGT+GGG | - | chr7_3:6404642-6404661 | Msa1091120:intron | 50.0% | |
| !! | GAAGTGTTTGGGATGGTGGA+AGG | - | chr7_3:6405447-6405466 | Msa1091120:intron | 50.0% |
| !! | TTTGGGATGGTGGAAGGCTA+GGG | - | chr7_3:6405453-6405472 | Msa1091120:intron | 50.0% |
| ! | GGTATTGTCGTATCTGAGGC+AGG | + | chr7_3:6405668-6405687 | None:intergenic | 50.0% |
| GCCCTAGCAACCCTAATATG+AGG | - | chr7_3:6405863-6405882 | Msa1091120:CDS | 50.0% | |
| ! | TCACAAGGGGTGCATGGGAA+AGG | + | chr7_3:6404764-6404783 | None:intergenic | 55.0% |
| TTTCCCATGCACCCCTTGTG+AGG | - | chr7_3:6404763-6404782 | Msa1091120:intron | 55.0% | |
| ! | TTGCCTCACAAGGGGTGCAT+GGG | + | chr7_3:6404769-6404788 | None:intergenic | 55.0% |
| !! | GACGGAAGTGTTTGGGATGG+TGG | - | chr7_3:6405443-6405462 | Msa1091120:intron | 55.0% |
| !! | GTTTGGGATGGTGGAAGGCT+AGG | - | chr7_3:6405452-6405471 | Msa1091120:intron | 55.0% |
| ! | TGCTAGGGCTTGGTCCATCA+GGG | + | chr7_3:6405852-6405871 | None:intergenic | 55.0% |
| ! | TTGCTAGGGCTTGGTCCATC+AGG | + | chr7_3:6405853-6405872 | None:intergenic | 55.0% |
| ! | TCACAAGGGGTGCATGGGAA+AGG | + | chr7_3:6404764-6404783 | None:intergenic | 55.0% |
| TTTCCCATGCACCCCTTGTG+AGG | - | chr7_3:6404763-6404782 | Msa1091120:intron | 55.0% | |
| ! | TTGCCTCACAAGGGGTGCAT+GGG | + | chr7_3:6404769-6404788 | None:intergenic | 55.0% |
| !! | GACGGAAGTGTTTGGGATGG+TGG | - | chr7_3:6405443-6405462 | Msa1091120:intron | 55.0% |
| !! | GTTTGGGATGGTGGAAGGCT+AGG | - | chr7_3:6405452-6405471 | Msa1091120:intron | 55.0% |
| ! | TGCTAGGGCTTGGTCCATCA+GGG | + | chr7_3:6405852-6405871 | None:intergenic | 55.0% |
| ! | TTGCTAGGGCTTGGTCCATC+AGG | + | chr7_3:6405853-6405872 | None:intergenic | 55.0% |
| ! | GTTGCCTCACAAGGGGTGCA+TGG | + | chr7_3:6404770-6404789 | None:intergenic | 60.0% |
| ! | TATCTGAGGCAGGGCGAGCA+AGG | + | chr7_3:6405658-6405677 | None:intergenic | 60.0% |
| !! | CAGGTGATGGTGGACCCTGA+TGG | - | chr7_3:6405835-6405854 | Msa1091120:CDS | 60.0% |
| ! | GTTGCCTCACAAGGGGTGCA+TGG | + | chr7_3:6404770-6404789 | None:intergenic | 60.0% |
| ! | TATCTGAGGCAGGGCGAGCA+AGG | + | chr7_3:6405658-6405677 | None:intergenic | 60.0% |
| !! | CAGGTGATGGTGGACCCTGA+TGG | - | chr7_3:6405835-6405854 | Msa1091120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 6404276 | 6405903 | 6404276 | ID=Msa1091120;Name=Msa1091120 |
| chr7_3 | mRNA | 6404276 | 6405903 | 6404276 | ID=Msa1091120-mRNA-1;Parent=Msa1091120;Name=Msa1091120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|84 |
| chr7_3 | exon | 6405715 | 6405903 | 6405715 | ID=Msa1091120-mRNA-1:exon:1924;Parent=Msa1091120-mRNA-1 |
| chr7_3 | exon | 6404276 | 6404341 | 6404276 | ID=Msa1091120-mRNA-1:exon:1923;Parent=Msa1091120-mRNA-1 |
| chr7_3 | CDS | 6405715 | 6405903 | 6405715 | ID=Msa1091120-mRNA-1:cds;Parent=Msa1091120-mRNA-1 |
| chr7_3 | CDS | 6404276 | 6404341 | 6404276 | ID=Msa1091120-mRNA-1:cds;Parent=Msa1091120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
