AlfalfaGEDB | Msa1046980

M. sativa cultivar zhongmu-4 / Msa1046980

KEGG: K16223
GO: -
PFAM: PF01161.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046980	XP_003621056.2	91.573	178	15	0	1	178	1	178	1.44e-117	340

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046980	sp\|Q9SXZ2\|FT_ARATH	65.341	176	60	1	1	176	1	175	2.58e-85	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046980	F8T7T2	91.573	178	15	0	1	178	1	178	6.90e-118	340

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1046980	0.819816	9.521582e-53	-8.615850e-47
Msa0002110	Msa1046980	0.824082	9.785362e-54	-8.615850e-47
Msa0002700	Msa1046980	0.806321	8.708517e-50	-8.615850e-47
Msa0007810	Msa1046980	0.842940	1.901652e-58	-8.615850e-47
Msa0011060	Msa1046980	0.825695	4.074587e-54	-8.615850e-47
Msa0011100	Msa1046980	0.807095	5.976709e-50	-8.615850e-47
Msa0011410	Msa1046980	0.809539	1.800452e-50	-8.615850e-47
Msa0011440	Msa1046980	0.817563	3.091250e-52	-8.615850e-47
Msa0017300	Msa1046980	0.817506	3.183807e-52	-8.615850e-47
Msa0021570	Msa1046980	0.802572	5.264710e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046980	MtrunA17_Chr7g0214761	91.573	178	15	0	1	178	1	178	1.33e-121	340
Msa1046980	MtrunA17_Chr7g0214771	91.573	178	15	0	1	178	1	178	1.83e-120	337
Msa1046980	MtrunA17_Chr6g0461711	68.750	176	54	1	1	176	1	175	2.64e-87	253
Msa1046980	MtrunA17_Chr7g0252784	70.115	174	51	1	1	174	1	173	4.43e-87	253
Msa1046980	MtrunA17_Chr7g0252800	64.881	168	58	1	7	174	8	174	7.40e-78	229
Msa1046980	MtrunA17_Chr7g0252811	63.190	163	58	2	13	175	35	195	4.62e-73	218
Msa1046980	MtrunA17_Chr6g0472451	53.216	171	79	1	4	174	3	172	1.48e-63	193
Msa1046980	MtrunA17_Chr7g0266201	53.216	171	78	2	5	174	5	174	1.45e-61	188
Msa1046980	MtrunA17_Chr1g0178751	51.875	160	74	2	7	164	7	165	1.52e-58	181
Msa1046980	MtrunA17_Chr2g0321301	46.746	169	88	2	7	174	6	173	5.57e-56	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046980	AT1G65480.1	65.341	176	60	1	1	176	1	175	2.62e-86	251
Msa1046980	AT1G65480.2	65.341	176	60	1	1	176	45	219	4.06e-86	252
Msa1046980	AT4G20370.1	65.714	175	59	1	1	175	1	174	4.93e-84	245
Msa1046980	AT5G62040.1	52.976	168	78	1	4	170	3	170	1.29e-62	191
Msa1046980	AT5G03840.1	52.273	176	80	3	1	174	4	177	1.42e-60	186
Msa1046980	AT2G27550.1	49.123	171	86	1	5	174	5	175	1.57e-59	183
Msa1046980	AT1G18100.1	50.581	172	81	3	5	174	4	173	6.27e-50	159

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Find 69 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTCTGGTGGAAGG+AGG	0.645300	7_2:+7589028	Msa1046980:CDS
AAAGACACTGAATTTGTAAA+GGG	0.449639	7_2:-7586470	None:intergenic
AAAGTCCAAGACCAACATCA+GGG	0.617461	7_2:+7588854	Msa1046980:CDS
AACAAAGAAGTCATCAACAG+TGG	0.676788	7_2:+7586512	Msa1046980:CDS
AACCAATATTCCAGCTACTA+CGG	0.486996	7_2:+7588141	Msa1046980:CDS
AACCCACCAAGAGTTCAAGT+TGG	0.662077	7_2:+7586560	Msa1046980:CDS
AACGTTGTCCCCGTAGTAGC+TGG	0.452584	7_2:-7588151	None:intergenic
AAGTTGGTGGAAATGACCTC+AGG	0.538516	7_2:+7586576	Msa1046980:CDS
AATAAGTCTCTAATTTGAGT+CGG	0.604020	7_2:-7589461	None:intergenic
AATTCGTCATTTGCTTGAGA+TGG	0.461753	7_2:+7589346	Msa1046980:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATCAATGAATCCTCTTG+TGG	+	chr7_2:7586418-7586437	Msa1046980:CDS	30.0%
CAAAGACACTGAATTTGTAA+AGG	-	chr7_2:7586474-7586493	None:intergenic	30.0%
TTACAAATTCAGTGTCTTTG+AGG	+	chr7_2:7586474-7586493	Msa1046980:CDS	30.0%
TACAAATTCAGTGTCTTTGA+GGG	+	chr7_2:7586475-7586494	Msa1046980:CDS	30.0%
TACCCCTTAAGAGAAAATTA+GGG	+	chr7_2:7586761-7586780	Msa1046980:intron	30.0%
GGAATGGTTTATTCTATAAG+TGG	-	chr7_2:7586796-7586815	None:intergenic	30.0%
TCAAAAACCCTAGAAAGAAA+AGG	-	chr7_2:7587125-7587144	None:intergenic	30.0%
AGACAGTGAGAATAAAGTAT+GGG	-	chr7_2:7587932-7587951	None:intergenic	30.0%
TAGACAGTGAGAATAAAGTA+TGG	-	chr7_2:7587933-7587952	None:intergenic	30.0%
GTATACATATGTGTGTGATT+TGG	+	chr7_2:7588039-7588058	Msa1046980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	7586374	7589548	7586374	ID=Msa1046980;Name=Msa1046980
chr7_2	mRNA	7586374	7589548	7586374	ID=Msa1046980-mRNA-1;Parent=Msa1046980;Name=Msa1046980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=36\|1\|1\|1\|1\|1\|4\|486\|178
chr7_2	exon	7586374	7586613	7586374	ID=Msa1046980-mRNA-1:exon:1916;Parent=Msa1046980-mRNA-1
chr7_2	exon	7587166	7587227	7587166	ID=Msa1046980-mRNA-1:exon:1917;Parent=Msa1046980-mRNA-1
chr7_2	exon	7588135	7588175	7588135	ID=Msa1046980-mRNA-1:exon:1918;Parent=Msa1046980-mRNA-1
chr7_2	exon	7588833	7589548	7588833	ID=Msa1046980-mRNA-1:exon:1919;Parent=Msa1046980-mRNA-1
chr7_2	five_prime_UTR	7586374	7586409	7586374	ID=Msa1046980-mRNA-1:five_prime_utr;Parent=Msa1046980-mRNA-1
chr7_2	CDS	7586410	7586613	7586410	ID=Msa1046980-mRNA-1:cds;Parent=Msa1046980-mRNA-1
chr7_2	CDS	7587166	7587227	7587166	ID=Msa1046980-mRNA-1:cds;Parent=Msa1046980-mRNA-1
chr7_2	CDS	7588135	7588175	7588135	ID=Msa1046980-mRNA-1:cds;Parent=Msa1046980-mRNA-1
chr7_2	CDS	7588833	7589062	7588833	ID=Msa1046980-mRNA-1:cds;Parent=Msa1046980-mRNA-1
chr7_2	three_prime_UTR	7589063	7589548	7589063	ID=Msa1046980-mRNA-1:three_prime_utr;Parent=Msa1046980-mRNA-1

Gene Sequence

>Msa1046980

ATGCGTATTAAATCAATGAATCCTCTTGTGGTTTGTGGTGTAATTGGAGATGTTTTGGATCCCTTTACAAATTCAGTGTCTTTGAGGGTTGTTTATGACAATAACAAAGAAGTCATCAACAGTGGTGAGCTCAAACCCTCTCAAATAGTCAACCCACCAAGAGTTCAAGTTGGTGGAAATGACCTCAGGACTCTATACACTCTGGTAATGGTGAATCCTGATGCACCAAGCCCTAGTAACCCGACTATGAGGGAATACCTGTATTGGATGGTAACCAATATTCCAGCTACTACGGGGACAACGTTCGGACAAGAGATAGTGAGCTATGAAAGTCCAAGACCAACATCAGGGATTCAACGTGTAATATTTGTGTTGTTTAGGCAACCTTGTAGGCACAATATATTAGCTCCAGGATGGCGACAAAATTTCAATACAAGAGATTTTGCAGAAGTTTACAATCTTGGATTACCTGTTGCTGCTCTCTATTTCAATTGTCAACGAGAAAATGGTTCTGGTGGAAGGAGGATGGTCATGTAA

Protein sequence

>Msa1046980

MRIKSMNPLVVCGVIGDVLDPFTNSVSLRVVYDNNKEVINSGELKPSQIVNPPRVQVGGNDLRTLYTLVMVNPDAPSPSNPTMREYLYWMVTNIPATTGTTFGQEIVSYESPRPTSGIQRVIFVLFRQPCRHNILAPGWRQNFNTRDFAEVYNLGLPVAALYFNCQRENGSGGRRMVM*