AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091130 MtrunA17_Chr7g0214761 91.573 178 15 0 1 178 1 178 1.33e-121 340
Msa1091130 MtrunA17_Chr7g0214771 91.573 178 15 0 1 178 1 178 1.83e-120 337
Msa1091130 MtrunA17_Chr6g0461711 68.750 176 54 1 1 176 1 175 2.64e-87 253
Msa1091130 MtrunA17_Chr7g0252784 70.115 174 51 1 1 174 1 173 4.43e-87 253
Msa1091130 MtrunA17_Chr7g0252800 64.881 168 58 1 7 174 8 174 7.40e-78 229
Msa1091130 MtrunA17_Chr7g0252811 63.190 163 58 2 13 175 35 195 4.62e-73 218
Msa1091130 MtrunA17_Chr6g0472451 53.216 171 79 1 4 174 3 172 1.48e-63 193
Msa1091130 MtrunA17_Chr7g0266201 53.216 171 78 2 5 174 5 174 1.45e-61 188
Msa1091130 MtrunA17_Chr1g0178751 51.875 160 74 2 7 164 7 165 1.52e-58 181
Msa1091130 MtrunA17_Chr2g0321301 46.746 169 88 2 7 174 6 173 5.57e-56 174
Msa1091130 MtrunA17_Chr8g0392741 50.296 169 81 3 1 168 1 167 5.03e-48 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091130 AT1G65480.1 65.341 176 60 1 1 176 1 175 2.62e-86 251
Msa1091130 AT1G65480.2 65.341 176 60 1 1 176 45 219 4.06e-86 252
Msa1091130 AT4G20370.1 65.714 175 59 1 1 175 1 174 4.93e-84 245
Msa1091130 AT5G62040.1 52.976 168 78 1 4 170 3 170 1.29e-62 191
Msa1091130 AT5G03840.1 52.273 176 80 3 1 174 4 177 1.42e-60 186
Msa1091130 AT2G27550.1 49.123 171 86 1 5 174 5 175 1.57e-59 183
Msa1091130 AT1G18100.1 50.581 172 81 3 5 174 4 173 6.27e-50 159

Find 69 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGATAATTTGCTTAT+TGG 0.192847 7_3:+6430969 None:intergenic
TTCAATTGTCAACGAGAAAA+TGG 0.223614 7_3:-6428420 Msa1091130:CDS
CTTGTGGTTTGTGGTGTAAT+TGG 0.261555 7_3:-6430909 Msa1091130:CDS
TTTGCAGAAGTTTACAATCT+TGG 0.279344 7_3:-6428465 Msa1091130:CDS
GTGTAATATTTGTGTTGTTT+AGG 0.306242 7_3:-6428548 Msa1091130:CDS
AATTTGTATCTTATTTGATT+TGG 0.312640 7_3:-6427931 Msa1091130:three_prime_UTR
TGGTGTAATTGGAGATGTTT+TGG 0.321102 7_3:-6430898 Msa1091130:CDS
CCCCGTAGTAGCTGGAATAT+TGG 0.377807 7_3:+6429200 None:intergenic
TTGAAGGACAAGGATATGTT+TGG 0.387675 7_3:+6428338 None:intergenic
TTTCCACCAACTTGAACTCT+TGG 0.407751 7_3:+6430777 None:intergenic
GTCATTTGCTTGAGATGGAT+TGG 0.409768 7_3:-6428081 Msa1091130:three_prime_UTR
TTACAAATTCAGTGTCTTTG+AGG 0.412870 7_3:-6430869 Msa1091130:CDS
TTACTAGGGCTTGGTGCATC+AGG 0.418391 7_3:+6430166 None:intergenic
TGAATCCCTGATGTTGGTCT+TGG 0.418940 7_3:+6428573 None:intergenic
ATGAATCCTCTTGTGGTTTG+TGG 0.422228 7_3:-6430918 Msa1091130:CDS
TGTCAACGAGAAAATGGTTC+TGG 0.429526 7_3:-6428414 Msa1091130:CDS
CCACCAACTTGAACTCTTGG+TGG 0.429744 7_3:+6430780 None:intergenic
CACCAACTTGAACTCTTGGT+GGG 0.432832 7_3:+6430781 None:intergenic
TACAAATTCAGTGTCTTTGA+GGG 0.441798 7_3:-6430868 Msa1091130:CDS
GTAACAATAATCTAAACATT+TGG 0.443901 7_3:-6428373 Msa1091130:exon
TGTTGTTTAGGCAACCTTGT+AGG 0.444815 7_3:-6428536 Msa1091130:CDS
GCCCTAGTAACCCGACTATG+AGG 0.448204 7_3:-6430153 Msa1091130:CDS
AAAGACACTGAATTTGTAAA+GGG 0.449639 7_3:+6430873 None:intergenic
CCCTCATAGTCGGGTTACTA+GGG 0.451139 7_3:+6430152 None:intergenic
AACGTTGTCCCCGTAGTAGC+TGG 0.452584 7_3:+6429192 None:intergenic
AATTCGTCATTTGCTTGAGA+TGG 0.461753 7_3:-6428086 Msa1091130:three_prime_UTR
CTATGAGGGAATACCTGTAT+TGG 0.464941 7_3:-6430138 Msa1091130:intron
GTGTCAGAGCATCCTCTCAA+TGG 0.472054 7_3:+6428040 None:intergenic
CAAAGACACTGAATTTGTAA+AGG 0.477373 7_3:+6430872 None:intergenic
GAAAGTCCAAGACCAACATC+AGG 0.479268 7_3:-6428579 Msa1091130:CDS
TTCATAAATAATCAACTAAG+AGG 0.483623 7_3:+6428000 None:intergenic
TTGAAATAGAGAGCAGCAAC+AGG 0.483630 7_3:+6428438 None:intergenic
AACCAATATTCCAGCTACTA+CGG 0.486996 7_3:-6429202 Msa1091130:CDS
TCCCTCATAGTCGGGTTACT+AGG 0.493000 7_3:+6430151 None:intergenic
ACCAATATTCCAGCTACTAC+GGG 0.499624 7_3:-6429201 Msa1091130:CDS
GGAGGAAATAATGAGTCCTC+GGG 0.501866 7_3:-6428130 Msa1091130:three_prime_UTR
TAGTTCCCACTTACCAATAC+AGG 0.507722 7_3:+6430125 None:intergenic
ATAGTCGGGTTACTAGGGCT+TGG 0.513582 7_3:+6430157 None:intergenic
TAAATCAATGAATCCTCTTG+TGG 0.519287 7_3:-6430925 Msa1091130:CDS
ACAGGTATTCCCTCATAGTC+GGG 0.521375 7_3:+6430143 None:intergenic
GCTACTACGGGGACAACGTT+CGG 0.524322 7_3:-6429189 Msa1091130:intron
TGGTGGGTTGACTATTTGAG+AGG 0.531184 7_3:+6430797 None:intergenic
AGGAGGAAATAATGAGTCCT+CGG 0.536424 7_3:-6428131 Msa1091130:three_prime_UTR
CCACCAAGAGTTCAAGTTGG+TGG 0.537101 7_3:-6430780 Msa1091130:CDS
AAGTTGGTGGAAATGACCTC+AGG 0.538516 7_3:-6430767 Msa1091130:CDS
TACAGGTATTCCCTCATAGT+CGG 0.540396 7_3:+6430142 None:intergenic
GGTGGGTTGACTATTTGAGA+GGG 0.541792 7_3:+6430798 None:intergenic
GAGAAAATGGTTCTGGTGGA+AGG 0.541973 7_3:-6428407 Msa1091130:CDS
GCTAATATATTGTGCCTACA+AGG 0.564781 7_3:+6428522 None:intergenic
TAAATTAATGTTAATCAGCA+AGG 0.565532 7_3:-6428151 Msa1091130:three_prime_UTR
AGGCACAATATATTAGCTCC+AGG 0.568581 7_3:-6428516 Msa1091130:CDS
CAACGAGAAAATGGTTCTGG+TGG 0.575115 7_3:-6428411 Msa1091130:CDS
ACACGTTGAATCCCTGATGT+TGG 0.579833 7_3:+6428567 None:intergenic
CCCTAGTAACCCGACTATGA+GGG 0.593212 7_3:-6430152 Msa1091130:CDS
TGGTTCTGGTGGAAGGAGGA+TGG 0.594121 7_3:-6428400 Msa1091130:CDS
AATAAGTCTCTAATTTGAGT+CGG 0.604020 7_3:+6427971 None:intergenic
ATTACACCACAAACCACAAG+AGG 0.610357 7_3:+6430912 None:intergenic
AAAGTCCAAGACCAACATCA+GGG 0.617461 7_3:-6428578 Msa1091130:CDS
TTGTTAGACAAACCATTGAG+AGG 0.619851 7_3:-6428052 Msa1091130:three_prime_UTR
ACAATATATTAGCTCCAGGA+TGG 0.638416 7_3:-6428512 Msa1091130:CDS
CCTCAGGACTCTATACACTC+TGG 0.640356 7_3:-6430751 Msa1091130:intron
AAAATGGTTCTGGTGGAAGG+AGG 0.645300 7_3:-6428404 Msa1091130:CDS
AACCCACCAAGAGTTCAAGT+TGG 0.662077 7_3:-6430783 Msa1091130:CDS
AACAAAGAAGTCATCAACAG+TGG 0.676788 7_3:-6430831 Msa1091130:CDS
GAGGAAATAATGAGTCCTCG+GGG 0.679259 7_3:-6428129 Msa1091130:three_prime_UTR
ATTAATGTTAATCAGCAAGG+AGG 0.685191 7_3:-6428148 Msa1091130:three_prime_UTR
CCAATATTCCAGCTACTACG+GGG 0.711639 7_3:-6429200 Msa1091130:CDS
CCAGAGTGTATAGAGTCCTG+AGG 0.732541 7_3:+6430751 None:intergenic
AGGAAATAATGAGTCCTCGG+GGG 0.734529 7_3:-6428128 Msa1091130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAATAATTTATAGAA+TGG - chr7_3:6428881-6428900 Msa1091130:intron 10.0%
!! TTAATATTCAAATTTAACAT+TGG + chr7_3:6429882-6429901 None:intergenic 10.0%
!! TTAATGTATGTATAAATATA+TGG - chr7_3:6430235-6430254 Msa1091130:intron 10.0%
!!! AGTTTTTTATTTTATTTGAA+AGG + chr7_3:6430641-6430660 None:intergenic 10.0%
!!! GATAATAGTATTTTTTTTTT+GGG + chr7_3:6430691-6430710 None:intergenic 10.0%
!!! TGATAATAGTATTTTTTTTT+TGG + chr7_3:6430692-6430711 None:intergenic 10.0%
!! AAAGAATTACCATATATAAA+TGG - chr7_3:6428248-6428267 Msa1091130:three_prime_UTR 15.0%
!!! GTTTATCAAATTAAAGTTTT+TGG + chr7_3:6428364-6428383 None:intergenic 15.0%
!!! AAAATTTATTTTCAAGTTTG+GGG + chr7_3:6428407-6428426 None:intergenic 15.0%
!!! GAAAATTTATTTTCAAGTTT+GGG + chr7_3:6428408-6428427 None:intergenic 15.0%
!!! TGAAAATTTATTTTCAAGTT+TGG + chr7_3:6428409-6428428 None:intergenic 15.0%
!!! TTTTGCAATATGTATTATTT+AGG + chr7_3:6428446-6428465 None:intergenic 15.0%
!!! GTTTTTTTTTTTCATTTCAA+GGG + chr7_3:6428520-6428539 None:intergenic 15.0%
!!! TGTTTTTTTTTTTCATTTCA+AGG + chr7_3:6428521-6428540 None:intergenic 15.0%
!! AATGAAAAAAAAAAACAGTT+AGG - chr7_3:6428524-6428543 Msa1091130:CDS 15.0%
!! ATAAAAAAAAAAGTCGAAAA+TGG - chr7_3:6429314-6429333 Msa1091130:intron 15.0%
!!! TTTATTTATTTTTCATGAGT+CGG + chr7_3:6429831-6429850 None:intergenic 15.0%
!!! TAGTGTATATTTTATATTGA+AGG + chr7_3:6430556-6430575 None:intergenic 15.0%
!!! AATTTGTATCTTATTTGATT+TGG - chr7_3:6430944-6430963 Msa1091130:exon 15.0%
!!! AAATTTATTTTCAAGTTTGG+GGG + chr7_3:6428406-6428425 None:intergenic 20.0%
!! CATACAAATTAAACCTAATT+GGG - chr7_3:6428583-6428602 Msa1091130:CDS 20.0%
!!! AAATTATGAACCCAATTTTA+AGG - chr7_3:6429767-6429786 Msa1091130:intron 20.0%
!! ATTACAACAAGGATATAAAT+GGG + chr7_3:6429801-6429820 None:intergenic 20.0%
!! TATTACAACAAGGATATAAA+TGG + chr7_3:6429802-6429821 None:intergenic 20.0%
!!! TTATATTTTTTTGACTGATG+AGG - chr7_3:6429994-6430013 Msa1091130:intron 20.0%
!! GTAACAATAATCTAAACATT+TGG - chr7_3:6430502-6430521 Msa1091130:intron 20.0%
!!! ATATTTTATATTGAAGGACA+AGG + chr7_3:6430550-6430569 None:intergenic 20.0%
!! TAAATTAATGTTAATCAGCA+AGG - chr7_3:6430724-6430743 Msa1091130:intron 20.0%
!! TTCATAAATAATCAACTAAG+AGG + chr7_3:6430878-6430897 None:intergenic 20.0%
!!! ATACAAATTTTTCATAGCAT+CGG + chr7_3:6430933-6430952 None:intergenic 20.0%
!!! TGCTTTGATAATTTGCTTAT+TGG + chr7_3:6427909-6427928 None:intergenic 25.0%
! AAAGACACTGAATTTGTAAA+GGG + chr7_3:6428005-6428024 None:intergenic 25.0%
!!! TCAAATTAAAGTTTTTGGCT+AGG + chr7_3:6428359-6428378 None:intergenic 25.0%
!!! AATTTATTTTCAAGTTTGGG+GGG + chr7_3:6428405-6428424 None:intergenic 25.0%
!!! ATTAGGTTTAATTTGTATGG+AGG + chr7_3:6428582-6428601 None:intergenic 25.0%
!!! CCAATTAGGTTTAATTTGTA+TGG + chr7_3:6428585-6428604 None:intergenic 25.0%
! CCATACAAATTAAACCTAAT+TGG - chr7_3:6428582-6428601 Msa1091130:CDS 25.0%
! TATTAAGAATGATCCCAATT+AGG + chr7_3:6428599-6428618 None:intergenic 25.0%
!! ATTAAAGCCTTTTCTTTCTA+GGG - chr7_3:6428646-6428665 Msa1091130:intron 25.0%
! AATATTTAACAAGCCCATAT+GGG + chr7_3:6428776-6428795 None:intergenic 25.0%
! AAATATTTAACAAGCCCATA+TGG + chr7_3:6428777-6428796 None:intergenic 25.0%
! TTCATTGACAAAATGAAACA+AGG - chr7_3:6429086-6429105 Msa1091130:intron 25.0%
! AACATGATATAGTTCATGTT+TGG - chr7_3:6429138-6429157 Msa1091130:intron 25.0%
!!! AACCCAATTTTAAGGATAAA+CGG - chr7_3:6429775-6429794 Msa1091130:intron 25.0%
!!! TTACATTTTTTTGACTGATG+AGG - chr7_3:6429921-6429940 Msa1091130:intron 25.0%
! AAGTATAGATTTCTGAATGT+TGG + chr7_3:6430072-6430091 None:intergenic 25.0%
! ATGGTGTTTGAATTAATTGT+AGG - chr7_3:6430254-6430273 Msa1091130:intron 25.0%
!!! GTGTAATATTTGTGTTGTTT+AGG - chr7_3:6430327-6430346 Msa1091130:intron 25.0%
! AATAAGTCTCTAATTTGAGT+CGG + chr7_3:6430907-6430926 None:intergenic 25.0%
TAAATCAATGAATCCTCTTG+TGG - chr7_3:6427950-6427969 Msa1091130:three_prime_UTR 30.0%
CAAAGACACTGAATTTGTAA+AGG + chr7_3:6428006-6428025 None:intergenic 30.0%
TTACAAATTCAGTGTCTTTG+AGG - chr7_3:6428006-6428025 Msa1091130:three_prime_UTR 30.0%
TACAAATTCAGTGTCTTTGA+GGG - chr7_3:6428007-6428026 Msa1091130:three_prime_UTR 30.0%
TACCCCTTAAGAGAAAATTA+GGG - chr7_3:6428293-6428312 Msa1091130:three_prime_UTR 30.0%
! TGACCCTAATTTTCTCTTAA+GGG + chr7_3:6428299-6428318 None:intergenic 30.0%
! TTGACCCTAATTTTCTCTTA+AGG + chr7_3:6428300-6428319 None:intergenic 30.0%
GGAATGGTTTATTCTATAAG+TGG + chr7_3:6428328-6428347 None:intergenic 30.0%
!!! TTTTTTCATTTCAAGGGTGT+TGG + chr7_3:6428514-6428533 None:intergenic 30.0%
!! GTTTAATTTGTATGGAGGTA+AGG + chr7_3:6428577-6428596 None:intergenic 30.0%
! GATTAAAGCCTTTTCTTTCT+AGG - chr7_3:6428645-6428664 Msa1091130:intron 30.0%
TCAAAAACCCTAGAAAGAAA+AGG + chr7_3:6428656-6428675 None:intergenic 30.0%
! GTTATAGTCTTACATAAGCA+TGG + chr7_3:6428840-6428859 None:intergenic 30.0%
! ATGCTTAATTTTGTGTCAAC+TGG - chr7_3:6429387-6429406 Msa1091130:intron 30.0%
AGACAGTGAGAATAAAGTAT+GGG + chr7_3:6429463-6429482 None:intergenic 30.0%
TAGACAGTGAGAATAAAGTA+TGG + chr7_3:6429464-6429483 None:intergenic 30.0%
GTATACATATGTGTGTGATT+TGG - chr7_3:6429571-6429590 Msa1091130:intron 30.0%
!! GTGATTTGGAAACTTTTGTT+TGG - chr7_3:6429585-6429604 Msa1091130:intron 30.0%
!!! TTTTTTTTTCCTTCCTTCGT+TGG - chr7_3:6429632-6429651 Msa1091130:intron 30.0%
ATTGGTTACCATCCTAATTA+AGG + chr7_3:6429660-6429679 None:intergenic 30.0%
TCGGAACTATTATTACAACA+AGG + chr7_3:6429812-6429831 None:intergenic 30.0%
!!! ATTTTTTTGACTGATGAGGA+TGG - chr7_3:6429925-6429944 Msa1091130:intron 30.0%
!!! ATTTTTTTGACTGATGAGGA+TGG - chr7_3:6429925-6429944 Msa1091130:intron 30.0%
TTTGCAGAAGTTTACAATCT+TGG - chr7_3:6430410-6430429 Msa1091130:intron 30.0%
TTCAATTGTCAACGAGAAAA+TGG - chr7_3:6430455-6430474 Msa1091130:intron 30.0%
ATTAATGTTAATCAGCAAGG+AGG - chr7_3:6430727-6430746 Msa1091130:intron 30.0%
!!! TTGGTTGTACGTTTTTTACT+AGG - chr7_3:6430963-6430982 Msa1091130:five_prime_UTR 30.0%
! TGGTGTAATTGGAGATGTTT+TGG - chr7_3:6427977-6427996 Msa1091130:three_prime_UTR 35.0%
AACAAAGAAGTCATCAACAG+TGG - chr7_3:6428044-6428063 Msa1091130:three_prime_UTR 35.0%
TTCGGGGATCCATTTATATA+TGG + chr7_3:6428260-6428279 None:intergenic 35.0%
GTAGCTTTCTTATATCTTCG+GGG + chr7_3:6428276-6428295 None:intergenic 35.0%
GGTAGCTTTCTTATATCTTC+GGG + chr7_3:6428277-6428296 None:intergenic 35.0%
GGGTAGCTTTCTTATATCTT+CGG + chr7_3:6428278-6428297 None:intergenic 35.0%
CTACCCCTTAAGAGAAAATT+AGG - chr7_3:6428292-6428311 Msa1091130:three_prime_UTR 35.0%
! GACCCTAATTTTCTCTTAAG+GGG + chr7_3:6428298-6428317 None:intergenic 35.0%
!!! TTCTAGGGTTTTTGAGTTTG+TGG - chr7_3:6428661-6428680 Msa1091130:intron 35.0%
! AGTTTGTGGCACTAATTTTC+AGG - chr7_3:6428675-6428694 Msa1091130:intron 35.0%
!!! TGGCACTAATTTTCAGGTAA+TGG - chr7_3:6428681-6428700 Msa1091130:intron 35.0%
! GAATACCTGTATTGGTAAGT+GGG - chr7_3:6428745-6428764 Msa1091130:intron 35.0%
AGTAGTAAACTTGAGAACCT+AGG + chr7_3:6428919-6428938 None:intergenic 35.0%
! ACTATCGGACTTAAGGATTT+TGG + chr7_3:6429019-6429038 None:intergenic 35.0%
TAGGATCATCCACTAACTAT+CGG + chr7_3:6429034-6429053 None:intergenic 35.0%
AACCAATATTCCAGCTACTA+CGG - chr7_3:6429673-6429692 Msa1091130:intron 35.0%
GGCCGTTTATCCTTAAAATT+GGG + chr7_3:6429780-6429799 None:intergenic 35.0%
GCTAATATATTGTGCCTACA+AGG + chr7_3:6430356-6430375 None:intergenic 35.0%
ACAATATATTAGCTCCAGGA+TGG - chr7_3:6430363-6430382 Msa1091130:intron 35.0%
TTGAAGGACAAGGATATGTT+TGG + chr7_3:6430540-6430559 None:intergenic 35.0%
AATTCGTCATTTGCTTGAGA+TGG - chr7_3:6430789-6430808 Msa1091130:CDS 35.0%
TTGTTAGACAAACCATTGAG+AGG - chr7_3:6430823-6430842 Msa1091130:CDS 35.0%
ATGAATCCTCTTGTGGTTTG+TGG - chr7_3:6427957-6427976 Msa1091130:three_prime_UTR 40.0%
ATTACACCACAAACCACAAG+AGG + chr7_3:6427966-6427985 None:intergenic 40.0%
! CTTGTGGTTTGTGGTGTAAT+TGG - chr7_3:6427966-6427985 Msa1091130:three_prime_UTR 40.0%
TTTCCACCAACTTGAACTCT+TGG + chr7_3:6428101-6428120 None:intergenic 40.0%
!!! GTTTTTGGCTAGGACAAAGA+AGG + chr7_3:6428349-6428368 None:intergenic 40.0%
!! TTTCATTTCAAGGGTGTTGG+AGG + chr7_3:6428511-6428530 None:intergenic 40.0%
TACAGGTATTCCCTCATAGT+CGG + chr7_3:6428736-6428755 None:intergenic 40.0%
CTATGAGGGAATACCTGTAT+TGG - chr7_3:6428737-6428756 Msa1091130:intron 40.0%
! GGAATACCTGTATTGGTAAG+TGG - chr7_3:6428744-6428763 Msa1091130:intron 40.0%
TAGTTCCCACTTACCAATAC+AGG + chr7_3:6428753-6428772 None:intergenic 40.0%
TAAGTGGGAACTACCCATAT+GGG - chr7_3:6428760-6428779 Msa1091130:intron 40.0%
CTTACATAAGCATGGTGTCT+TGG + chr7_3:6428832-6428851 None:intergenic 40.0%
! AATGGCATACGCTATTTCCT+AGG - chr7_3:6428899-6428918 Msa1091130:intron 40.0%
TCCTTAAGTCCGATAGTTAG+TGG - chr7_3:6429022-6429041 Msa1091130:intron 40.0%
TCCACTAACTATCGGACTTA+AGG + chr7_3:6429026-6429045 None:intergenic 40.0%
CTTAACTAGTCACATGTGCT+TGG + chr7_3:6429115-6429134 None:intergenic 40.0%
ATTAAGGATCCAACGAAGGA+AGG + chr7_3:6429644-6429663 None:intergenic 40.0%
CCTAATTAAGGATCCAACGA+AGG + chr7_3:6429648-6429667 None:intergenic 40.0%
CCTTCGTTGGATCCTTAATT+AGG - chr7_3:6429645-6429664 Msa1091130:intron 40.0%
CGTTGGATCCTTAATTAGGA+TGG - chr7_3:6429649-6429668 Msa1091130:intron 40.0%
ACCAATATTCCAGCTACTAC+GGG - chr7_3:6429674-6429693 Msa1091130:intron 40.0%
GGTACGTGCAAAATTCTCTT+GGG - chr7_3:6429707-6429726 Msa1091130:intron 40.0%
GGGCCGTTTATCCTTAAAAT+TGG + chr7_3:6429781-6429800 None:intergenic 40.0%
AAAGTCCAAGACCAACATCA+GGG - chr7_3:6430297-6430316 Msa1091130:intron 40.0%
! TGTTGTTTAGGCAACCTTGT+AGG - chr7_3:6430339-6430358 Msa1091130:intron 40.0%
AGGCACAATATATTAGCTCC+AGG - chr7_3:6430359-6430378 Msa1091130:intron 40.0%
! TTGAAATTTTGTCGCCATCC+TGG + chr7_3:6430380-6430399 None:intergenic 40.0%
TTGAAATAGAGAGCAGCAAC+AGG + chr7_3:6430440-6430459 None:intergenic 40.0%
TGTCAACGAGAAAATGGTTC+TGG - chr7_3:6430461-6430480 Msa1091130:intron 40.0%
AGGAGGAAATAATGAGTCCT+CGG - chr7_3:6430744-6430763 Msa1091130:intron 40.0%
GTCATTTGCTTGAGATGGAT+TGG - chr7_3:6430794-6430813 Msa1091130:CDS 40.0%
!! GGTGGGTTGACTATTTGAGA+GGG + chr7_3:6428080-6428099 None:intergenic 45.0%
!! TGGTGGGTTGACTATTTGAG+AGG + chr7_3:6428081-6428100 None:intergenic 45.0%
AACCCACCAAGAGTTCAAGT+TGG - chr7_3:6428092-6428111 Msa1091130:three_prime_UTR 45.0%
CACCAACTTGAACTCTTGGT+GGG + chr7_3:6428097-6428116 None:intergenic 45.0%
!! AAGTTGGTGGAAATGACCTC+AGG - chr7_3:6428108-6428127 Msa1091130:three_prime_UTR 45.0%
AGGACTCTATACACTCTGGT+TGG - chr7_3:6428128-6428147 Msa1091130:three_prime_UTR 45.0%
TGGCTAGGACAAAGAAGGAA+TGG + chr7_3:6428344-6428363 None:intergenic 45.0%
ACAGGTATTCCCTCATAGTC+GGG + chr7_3:6428735-6428754 None:intergenic 45.0%
GTAAGTGGGAACTACCCATA+TGG - chr7_3:6428759-6428778 Msa1091130:intron 45.0%
CCAATATTCCAGCTACTACG+GGG - chr7_3:6429675-6429694 Msa1091130:intron 45.0%
CGGTACGTGCAAAATTCTCT+TGG - chr7_3:6429706-6429725 Msa1091130:intron 45.0%
GAAAGTCCAAGACCAACATC+AGG - chr7_3:6430296-6430315 Msa1091130:intron 45.0%
! TGAATCCCTGATGTTGGTCT+TGG + chr7_3:6430305-6430324 None:intergenic 45.0%
ACACGTTGAATCCCTGATGT+TGG + chr7_3:6430311-6430330 None:intergenic 45.0%
!! CAACGAGAAAATGGTTCTGG+TGG - chr7_3:6430464-6430483 Msa1091130:intron 45.0%
!! GAGAAAATGGTTCTGGTGGA+AGG - chr7_3:6430468-6430487 Msa1091130:intron 45.0%
!! AAAATGGTTCTGGTGGAAGG+AGG - chr7_3:6430471-6430490 Msa1091130:intron 45.0%
GGAGGAAATAATGAGTCCTC+GGG - chr7_3:6430745-6430764 Msa1091130:intron 45.0%
GAGGAAATAATGAGTCCTCG+GGG - chr7_3:6430746-6430765 Msa1091130:intron 45.0%
AGGAAATAATGAGTCCTCGG+GGG - chr7_3:6430747-6430766 Msa1091130:intron 45.0%
!! TAAAAAAAATATATATTACT+AGG + chr7_3:6429053-6429072 None:intergenic 5.0%
!!! ATACATTTTTTTTTTTTTTT+TGG - chr7_3:6429483-6429502 Msa1091130:intron 5.0%
!!! TACATTTTTTTTTTTTTTTT+GGG - chr7_3:6429484-6429503 Msa1091130:intron 5.0%
CCACCAACTTGAACTCTTGG+TGG + chr7_3:6428098-6428117 None:intergenic 50.0%
!! CCACCAAGAGTTCAAGTTGG+TGG - chr7_3:6428095-6428114 Msa1091130:three_prime_UTR 50.0%
CCAGAGTGTATAGAGTCCTG+AGG + chr7_3:6428127-6428146 None:intergenic 50.0%
CCTCAGGACTCTATACACTC+TGG - chr7_3:6428124-6428143 Msa1091130:three_prime_UTR 50.0%
!! CATTTCAAGGGTGTTGGAGG+CGG + chr7_3:6428508-6428527 None:intergenic 50.0%
!! TTACTAGGGCTTGGTGCATC+AGG + chr7_3:6428712-6428731 None:intergenic 50.0%
ATAGTCGGGTTACTAGGGCT+TGG + chr7_3:6428721-6428740 None:intergenic 50.0%
CCCTCATAGTCGGGTTACTA+GGG + chr7_3:6428726-6428745 None:intergenic 50.0%
CCCTAGTAACCCGACTATGA+GGG - chr7_3:6428723-6428742 Msa1091130:intron 50.0%
TCCCTCATAGTCGGGTTACT+AGG + chr7_3:6428727-6428746 None:intergenic 50.0%
CCCCGTAGTAGCTGGAATAT+TGG + chr7_3:6429678-6429697 None:intergenic 50.0%
AACTAAGCTCATATCCCCCG+AGG + chr7_3:6430764-6430783 None:intergenic 50.0%
! GTGTCAGAGCATCCTCTCAA+TGG + chr7_3:6430838-6430857 None:intergenic 50.0%
GCCCTAGTAACCCGACTATG+AGG - chr7_3:6428722-6428741 Msa1091130:intron 55.0%
AACGTTGTCCCCGTAGTAGC+TGG + chr7_3:6429686-6429705 None:intergenic 55.0%
GCTACTACGGGGACAACGTT+CGG - chr7_3:6429686-6429705 Msa1091130:intron 55.0%
!! TGGTTCTGGTGGAAGGAGGA+TGG - chr7_3:6430475-6430494 Msa1091130:intron 55.0%
!! TCAAGGGTGTTGGAGGCGGC+TGG + chr7_3:6428504-6428523 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6427906 6430991 6427906 ID=Msa1091130;Name=Msa1091130
chr7_3 mRNA 6427906 6430991 6427906 ID=Msa1091130-mRNA-1;Parent=Msa1091130;Name=Msa1091130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=36|1|1|1|1|1|4|486|178
chr7_3 exon 6427906 6428621 6427906 ID=Msa1091130-mRNA-1:exon:1928;Parent=Msa1091130-mRNA-1
chr7_3 exon 6429190 6429230 6429190 ID=Msa1091130-mRNA-1:exon:1927;Parent=Msa1091130-mRNA-1
chr7_3 exon 6430139 6430200 6430139 ID=Msa1091130-mRNA-1:exon:1926;Parent=Msa1091130-mRNA-1
chr7_3 exon 6430752 6430991 6430752 ID=Msa1091130-mRNA-1:exon:1925;Parent=Msa1091130-mRNA-1
chr7_3 five_prime_UTR 6430956 6430991 6430956 ID=Msa1091130-mRNA-1:five_prime_utr;Parent=Msa1091130-mRNA-1
chr7_3 CDS 6430752 6430955 6430752 ID=Msa1091130-mRNA-1:cds;Parent=Msa1091130-mRNA-1
chr7_3 CDS 6430139 6430200 6430139 ID=Msa1091130-mRNA-1:cds;Parent=Msa1091130-mRNA-1
chr7_3 CDS 6429190 6429230 6429190 ID=Msa1091130-mRNA-1:cds;Parent=Msa1091130-mRNA-1
chr7_3 CDS 6428392 6428621 6428392 ID=Msa1091130-mRNA-1:cds;Parent=Msa1091130-mRNA-1
chr7_3 three_prime_UTR 6427906 6428391 6427906 ID=Msa1091130-mRNA-1:three_prime_utr;Parent=Msa1091130-mRNA-1
Gene Sequence

>Msa1091130

ATGCGTATTAAATCAATGAATCCTCTTGTGGTTTGTGGTGTAATTGGAGATGTTTTGGATCCCTTTACAAATTCAGTGTCTTTGAGGGTTGTTTATGACAATAACAAAGAAGTCATCAACAGTGGTGAGCTCAAACCCTCTCAAATAGTCAACCCACCAAGAGTTCAAGTTGGTGGAAATGACCTCAGGACTCTATACACTCTGGTAATGGTGAATCCTGATGCACCAAGCCCTAGTAACCCGACTATGAGGGAATACCTGTATTGGATGGTAACCAATATTCCAGCTACTACGGGGACAACGTTCGGACAAGAGATAGTGAGCTATGAAAGTCCAAGACCAACATCAGGGATTCAACGTGTAATATTTGTGTTGTTTAGGCAACCTTGTAGGCACAATATATTAGCTCCAGGATGGCGACAAAATTTCAATACAAGAGATTTTGCAGAAGTTTACAATCTTGGATTACCTGTTGCTGCTCTCTATTTCAATTGTCAACGAGAAAATGGTTCTGGTGGAAGGAGGATGGTCATGTAA

Protein sequence

>Msa1091130

MRIKSMNPLVVCGVIGDVLDPFTNSVSLRVVYDNNKEVINSGELKPSQIVNPPRVQVGGNDLRTLYTLVMVNPDAPSPSNPTMREYLYWMVTNIPATTGTTFGQEIVSYESPRPTSGIQRVIFVLFRQPCRHNILAPGWRQNFNTRDFAEVYNLGLPVAALYFNCQRENGSGGRRMVM*