Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134480 | XP_003621056.2 | 91.011 | 178 | 16 | 0 | 12 | 189 | 1 | 178 | 2.72e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134480 | sp|Q9SXZ2|FT_ARATH | 65.341 | 176 | 60 | 1 | 12 | 187 | 1 | 175 | 2.08e-85 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134480 | F8T7T2 | 91.011 | 178 | 16 | 0 | 12 | 189 | 1 | 178 | 1.30e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1134480 | 0.811086 | 8.347211e-51 | -8.615850e-47 |
| Msa0011060 | Msa1134480 | 0.801381 | 9.248599e-49 | -8.615850e-47 |
| Msa0053260 | Msa1134480 | 0.802209 | 6.254382e-49 | -8.615850e-47 |
| Msa0056230 | Msa1134480 | 0.801910 | 7.203717e-49 | -8.615850e-47 |
| Msa0081700 | Msa1134480 | 0.817339 | 3.470915e-52 | -8.615850e-47 |
| Msa0098500 | Msa1134480 | 0.819378 | 1.198432e-52 | -8.615850e-47 |
| Msa0099430 | Msa1134480 | 0.800127 | 1.667126e-48 | -8.615850e-47 |
| Msa0617470 | Msa1134480 | 0.815177 | 1.056857e-51 | -8.615850e-47 |
| Msa0654400 | Msa1134480 | 0.830601 | 2.679354e-55 | -8.615850e-47 |
| Msa0654500 | Msa1134480 | 0.825209 | 5.310632e-54 | -8.615850e-47 |
| Msa0676290 | Msa1134480 | 0.805673 | 1.191465e-49 | -8.615850e-47 |
| Msa0690100 | Msa1134480 | 0.804678 | 1.924682e-49 | -8.615850e-47 |
| Msa0700250 | Msa1134480 | 0.805955 | 1.039508e-49 | -8.615850e-47 |
| Msa0742690 | Msa1134480 | 0.803618 | 3.198613e-49 | -8.615850e-47 |
| Msa0779830 | Msa1134480 | 0.814213 | 1.727708e-51 | -8.615850e-47 |
| Msa0791780 | Msa1134480 | 0.806246 | 9.030186e-50 | -8.615850e-47 |
| Msa0827560 | Msa1134480 | 0.801373 | 9.282252e-49 | -8.615850e-47 |
| Msa0127910 | Msa1134480 | 0.812123 | 4.966051e-51 | -8.615850e-47 |
| Msa0139930 | Msa1134480 | 0.853236 | 2.731117e-61 | -8.615850e-47 |
| Msa0173950 | Msa1134480 | 0.800593 | 1.340043e-48 | -8.615850e-47 |
| Msa0174060 | Msa1134480 | 0.828451 | 8.926130e-55 | -8.615850e-47 |
| Msa0367200 | Msa1134480 | 0.802035 | 6.791641e-49 | -8.615850e-47 |
| Msa0368450 | Msa1134480 | 0.823742 | 1.175920e-53 | -8.615850e-47 |
| Msa0375930 | Msa1134480 | 0.800029 | 1.745554e-48 | -8.615850e-47 |
| Msa0378440 | Msa1134480 | 0.806463 | 8.128156e-50 | -8.615850e-47 |
| Msa0385280 | Msa1134480 | 0.809767 | 1.607973e-50 | -8.615850e-47 |
| Msa0390590 | Msa1134480 | 0.810201 | 1.296577e-50 | -8.615850e-47 |
| Msa0414510 | Msa1134480 | 0.814832 | 1.260474e-51 | -8.615850e-47 |
| Msa0427890 | Msa1134480 | 0.826937 | 2.062197e-54 | -8.615850e-47 |
| Msa0461620 | Msa1134480 | 0.816594 | 5.102484e-52 | -8.615850e-47 |
| Msa0474120 | Msa1134480 | 0.824111 | 9.632573e-54 | -8.615850e-47 |
| Msa1004310 | Msa1134480 | 0.822884 | 1.865332e-53 | -8.615850e-47 |
| Msa1004630 | Msa1134480 | 0.893418 | 6.405933e-75 | -8.615850e-47 |
| Msa1004660 | Msa1134480 | 0.927532 | 1.030142e-91 | -8.615850e-47 |
| Msa1014550 | Msa1134480 | 0.802064 | 6.698099e-49 | -8.615850e-47 |
| Msa1018210 | Msa1134480 | 0.802896 | 4.513882e-49 | -8.615850e-47 |
| Msa1031310 | Msa1134480 | 0.828155 | 1.051799e-54 | -8.615850e-47 |
| Msa1045940 | Msa1134480 | 0.822518 | 2.270112e-53 | -8.615850e-47 |
| Msa1046980 | Msa1134480 | 0.941887 | 1.898657e-101 | -8.615850e-47 |
| Msa1046990 | Msa1134480 | 0.882177 | 1.295714e-70 | -8.615850e-47 |
| Msa1055520 | Msa1134480 | 0.811270 | 7.615871e-51 | -8.615850e-47 |
| Msa1057940 | Msa1134480 | 0.835250 | 1.871928e-56 | -8.615850e-47 |
| Msa1078280 | Msa1134480 | 0.811106 | 8.265726e-51 | -8.615850e-47 |
| Msa1091120 | Msa1134480 | 0.802991 | 4.314305e-49 | -8.615850e-47 |
| Msa1091130 | Msa1134480 | 0.934692 | 2.724247e-96 | -8.615850e-47 |
| Msa1101050 | Msa1134480 | 0.827531 | 1.486081e-54 | -8.615850e-47 |
| Msa1104020 | Msa1134480 | 0.807244 | 5.556553e-50 | -8.615850e-47 |
| Msa0261350 | Msa1134480 | 0.802804 | 4.714122e-49 | -8.615850e-47 |
| Msa0334450 | Msa1134480 | 0.810004 | 1.429538e-50 | -8.615850e-47 |
| Msa1134430 | Msa1134480 | 0.867508 | 1.299424e-65 | -8.615850e-47 |
| Msa1134460 | Msa1134480 | 0.868671 | 5.488797e-66 | -8.615850e-47 |
| Msa1134480 | Msa1144380 | 0.803676 | 3.111854e-49 | -8.615850e-47 |
| Msa1134480 | Msa1158280 | 0.832125 | 1.130100e-55 | -8.615850e-47 |
| Msa1134480 | Msa1169590 | 0.802076 | 6.659526e-49 | -8.615850e-47 |
| Msa1134480 | Msa1194480 | 0.802855 | 4.601468e-49 | -8.615850e-47 |
| Msa1134480 | Msa1213470 | 0.815621 | 8.417227e-52 | -8.615850e-47 |
| Msa1134480 | Msa1299220 | -0.816395 | 5.655106e-52 | -8.615850e-47 |
| Msa1134480 | Msa1300370 | 0.814080 | 1.848089e-51 | -8.615850e-47 |
| Msa1134480 | Msa1305970 | 0.820523 | 6.559358e-53 | -8.615850e-47 |
| Msa1134480 | Msa1380180 | 0.804436 | 2.161726e-49 | -8.615850e-47 |
| Msa1134480 | Msa1384410 | 0.814701 | 1.347152e-51 | -8.615850e-47 |
| Msa1134480 | Msa1389670 | 0.827870 | 1.232065e-54 | -8.615850e-47 |
| Msa1134480 | Msa1397560 | 0.822529 | 2.256068e-53 | -8.615850e-47 |
| Msa1134480 | Msa1410480 | 0.815824 | 7.582711e-52 | -8.615850e-47 |
| Msa1134480 | Msa1410500 | 0.803371 | 3.599957e-49 | -8.615850e-47 |
| Msa1134480 | Msa1421520 | 0.836492 | 9.066216e-57 | -8.615850e-47 |
| Msa0502900 | Msa1134480 | 0.835339 | 1.777607e-56 | -8.615850e-47 |
| Msa0521260 | Msa1134480 | 0.805804 | 1.118460e-49 | -8.615850e-47 |
| Msa0523140 | Msa1134480 | 0.808126 | 3.609094e-50 | -8.615850e-47 |
| Msa0523150 | Msa1134480 | 0.815014 | 1.148410e-51 | -8.615850e-47 |
| Msa0526840 | Msa1134480 | 0.801187 | 1.013283e-48 | -8.615850e-47 |
| Msa0533610 | Msa1134480 | 0.827551 | 1.469475e-54 | -8.615850e-47 |
| Msa0545750 | Msa1134480 | 0.823579 | 1.284013e-53 | -8.615850e-47 |
| Msa0559440 | Msa1134480 | 0.825869 | 3.705113e-54 | -8.615850e-47 |
| Msa0559640 | Msa1134480 | 0.817788 | 2.749689e-52 | -8.615850e-47 |
| Msa0571900 | Msa1134480 | 0.810083 | 1.374714e-50 | -8.615850e-47 |
| Msa0575960 | Msa1134480 | 0.806651 | 7.415917e-50 | -8.615850e-47 |
| Msa0869320 | Msa1134480 | 0.819831 | 9.448206e-53 | -8.615850e-47 |
| Msa0870220 | Msa1134480 | 0.814520 | 1.477949e-51 | -8.615850e-47 |
| Msa0903460 | Msa1134480 | 0.820536 | 6.511518e-53 | -8.615850e-47 |
| Msa0934290 | Msa1134480 | 0.822790 | 1.961687e-53 | -8.615850e-47 |
| Msa0935930 | Msa1134480 | 0.830924 | 2.232201e-55 | -8.615850e-47 |
| Msa0956600 | Msa1134480 | 0.802056 | 6.723132e-49 | -8.615850e-47 |
| Msa0971780 | Msa1134480 | 0.825701 | 4.059803e-54 | -8.615850e-47 |
| Msa0972930 | Msa1134480 | 0.802213 | 6.240980e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134480 | MtrunA17_Chr7g0214761 | 91.011 | 178 | 16 | 0 | 12 | 189 | 1 | 178 | 2.50e-121 | 340 |
| Msa1134480 | MtrunA17_Chr7g0214771 | 91.011 | 178 | 16 | 0 | 12 | 189 | 1 | 178 | 3.37e-120 | 337 |
| Msa1134480 | MtrunA17_Chr6g0461711 | 68.750 | 176 | 54 | 1 | 12 | 187 | 1 | 175 | 1.29e-87 | 254 |
| Msa1134480 | MtrunA17_Chr7g0252784 | 70.115 | 174 | 51 | 1 | 12 | 185 | 1 | 173 | 1.71e-87 | 254 |
| Msa1134480 | MtrunA17_Chr7g0252800 | 64.881 | 168 | 58 | 1 | 18 | 185 | 8 | 174 | 3.78e-78 | 231 |
| Msa1134480 | MtrunA17_Chr7g0252811 | 62.577 | 163 | 59 | 2 | 24 | 186 | 35 | 195 | 2.05e-72 | 217 |
| Msa1134480 | MtrunA17_Chr6g0472451 | 53.216 | 171 | 79 | 1 | 15 | 185 | 3 | 172 | 2.28e-63 | 193 |
| Msa1134480 | MtrunA17_Chr7g0266201 | 52.632 | 171 | 79 | 2 | 16 | 185 | 5 | 174 | 6.32e-61 | 187 |
| Msa1134480 | MtrunA17_Chr1g0178751 | 51.250 | 160 | 75 | 2 | 18 | 175 | 7 | 165 | 8.47e-58 | 179 |
| Msa1134480 | MtrunA17_Chr2g0321301 | 46.154 | 169 | 89 | 2 | 18 | 185 | 6 | 173 | 3.40e-55 | 172 |
| Msa1134480 | MtrunA17_Chr8g0392741 | 50.296 | 169 | 81 | 3 | 12 | 179 | 1 | 167 | 6.60e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134480 | AT1G65480.1 | 65.341 | 176 | 60 | 1 | 12 | 187 | 1 | 175 | 2.11e-86 | 252 |
| Msa1134480 | AT1G65480.2 | 65.341 | 176 | 60 | 1 | 12 | 187 | 45 | 219 | 3.49e-86 | 253 |
| Msa1134480 | AT4G20370.1 | 65.143 | 175 | 60 | 1 | 12 | 186 | 1 | 174 | 1.21e-83 | 245 |
| Msa1134480 | AT5G62040.1 | 52.976 | 168 | 78 | 1 | 15 | 181 | 3 | 170 | 2.76e-62 | 191 |
| Msa1134480 | AT5G03840.1 | 51.705 | 176 | 81 | 3 | 12 | 185 | 4 | 177 | 1.03e-59 | 184 |
| Msa1134480 | AT2G27550.1 | 49.123 | 171 | 86 | 1 | 16 | 185 | 5 | 175 | 2.04e-59 | 184 |
| Msa1134480 | AT1G18100.1 | 50.581 | 172 | 81 | 3 | 16 | 185 | 4 | 173 | 9.10e-50 | 159 |
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGTCAACGAGAAAA+TGG | 0.223614 | 7_4:-994928 | Msa1134480:CDS |
| CTTGTGGTTTGTGGTGTAAT+TGG | 0.261555 | 7_4:-997434 | Msa1134480:CDS |
| TTTGCAGAAGTTTACAATCT+TGG | 0.279344 | 7_4:-994973 | Msa1134480:CDS |
| GTGTAATATTTGTGTTGTTT+AGG | 0.306242 | 7_4:-995056 | Msa1134480:CDS |
| TGGTGTAATTGGAGATGTTT+TGG | 0.321102 | 7_4:-997423 | Msa1134480:CDS |
| TTGAAGGACAAGGATATGTT+TGG | 0.358658 | 7_4:+994846 | None:intergenic |
| TGCTTTGATAATTTGCTCAT+TGG | 0.373361 | 7_4:+997494 | None:intergenic |
| CCCCGTAGTAGCTGGAATAT+TGG | 0.377807 | 7_4:+995764 | None:intergenic |
| TTGCAAATTCAGTGTCTTTG+AGG | 0.380903 | 7_4:-997394 | Msa1134480:CDS |
| TGCAAATTCAGTGTCTTTGA+GGG | 0.393219 | 7_4:-997393 | Msa1134480:CDS |
| TTTCCACCAACTTGAACTCT+TGG | 0.407751 | 7_4:+997302 | None:intergenic |
| TTACTAGGGCTTGGTGCATC+AGG | 0.418391 | 7_4:+996719 | None:intergenic |
| TGAATCCCTGATGTTGGTCT+TGG | 0.418940 | 7_4:+995081 | None:intergenic |
| ATGAATCCTCTTGTGGTTTG+TGG | 0.422228 | 7_4:-997443 | Msa1134480:CDS |
| TGTCAACGAGAAAATGGTTC+TGG | 0.429526 | 7_4:-994922 | Msa1134480:CDS |
| CCACCAACTTGAACTCTTGG+TGG | 0.429744 | 7_4:+997305 | None:intergenic |
| CACCAACTTGAACTCTTGGT+GGG | 0.432832 | 7_4:+997306 | None:intergenic |
| TGTTGTTTAGGCAACCTTGT+AGG | 0.444815 | 7_4:-995044 | Msa1134480:CDS |
| GCCCTAGTAACCCGACTATG+AGG | 0.448204 | 7_4:-996706 | Msa1134480:CDS |
| CCCTCATAGTCGGGTTACTA+GGG | 0.451139 | 7_4:+996705 | None:intergenic |
| AACGTTGTCCCCGTAGTAGC+TGG | 0.452584 | 7_4:+995756 | None:intergenic |
| CTATGAGGGAATACCTGTAT+TGG | 0.464941 | 7_4:-996691 | Msa1134480:intron |
| GAAAGTCCAAGACCAACATC+AGG | 0.479268 | 7_4:-995087 | Msa1134480:CDS |
| TTGAAATAGAGAGCAGCAAC+AGG | 0.483630 | 7_4:+994946 | None:intergenic |
| AACCAATATTCCAGCTACTA+CGG | 0.486996 | 7_4:-995766 | Msa1134480:CDS |
| TCCCTCATAGTCGGGTTACT+AGG | 0.493000 | 7_4:+996704 | None:intergenic |
| ACCAATATTCCAGCTACTAC+GGG | 0.499624 | 7_4:-995765 | Msa1134480:CDS |
| TAGTTCCCACTTACCAATAC+AGG | 0.507722 | 7_4:+996678 | None:intergenic |
| ATAGTCGGGTTACTAGGGCT+TGG | 0.513582 | 7_4:+996710 | None:intergenic |
| TAAATCAATGAATCCTCTTG+TGG | 0.519287 | 7_4:-997450 | Msa1134480:CDS |
| ACAGGTATTCCCTCATAGTC+GGG | 0.521375 | 7_4:+996696 | None:intergenic |
| GCTACTACGGGGACAACGTT+CGG | 0.524322 | 7_4:-995753 | Msa1134480:intron |
| TGGTGGGTTGACTATTTGAG+AGG | 0.531184 | 7_4:+997322 | None:intergenic |
| CCACCAAGAGTTCAAGTTGG+TGG | 0.537101 | 7_4:-997305 | Msa1134480:CDS |
| AAGTTGGTGGAAATGACCTC+AGG | 0.538516 | 7_4:-997292 | Msa1134480:CDS |
| TACAGGTATTCCCTCATAGT+CGG | 0.540396 | 7_4:+996695 | None:intergenic |
| GGTGGGTTGACTATTTGAGA+GGG | 0.541792 | 7_4:+997323 | None:intergenic |
| GAGAAAATGGTTCTGGTGGA+AGG | 0.541973 | 7_4:-994915 | Msa1134480:CDS |
| AAAGACACTGAATTTGCAAA+GGG | 0.562063 | 7_4:+997398 | None:intergenic |
| GCTAATATATTGTGCCTACA+AGG | 0.564781 | 7_4:+995030 | None:intergenic |
| AGGCACAATATATTAGCTCC+AGG | 0.568581 | 7_4:-995024 | Msa1134480:CDS |
| CAACGAGAAAATGGTTCTGG+TGG | 0.575115 | 7_4:-994919 | Msa1134480:CDS |
| ACACGTTGAATCCCTGATGT+TGG | 0.579833 | 7_4:+995075 | None:intergenic |
| CAAAGACACTGAATTTGCAA+AGG | 0.587324 | 7_4:+997397 | None:intergenic |
| CCCTAGTAACCCGACTATGA+GGG | 0.593212 | 7_4:-996705 | Msa1134480:CDS |
| TGGTTCTGGTGGAAGGAGGA+TGG | 0.594121 | 7_4:-994908 | Msa1134480:CDS |
| ATTACACCACAAACCACAAG+AGG | 0.610357 | 7_4:+997437 | None:intergenic |
| AAAGTCCAAGACCAACATCA+GGG | 0.617461 | 7_4:-995086 | Msa1134480:CDS |
| ACAATATATTAGCTCCAGGA+TGG | 0.638416 | 7_4:-995020 | Msa1134480:CDS |
| CCTCAGGACTCTATACACTC+TGG | 0.640356 | 7_4:-997276 | Msa1134480:intron |
| AAAATGGTTCTGGTGGAAGG+AGG | 0.645300 | 7_4:-994912 | Msa1134480:CDS |
| AACCCACCAAGAGTTCAAGT+TGG | 0.662077 | 7_4:-997308 | Msa1134480:CDS |
| AACAAAGAAGTCATCAACAG+TGG | 0.676788 | 7_4:-997356 | Msa1134480:CDS |
| CCAATATTCCAGCTACTACG+GGG | 0.711639 | 7_4:-995764 | Msa1134480:CDS |
| CCAGAGTGTATAGAGTCCTG+AGG | 0.732541 | 7_4:+997276 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAAATAATTTATAGAA+TGG | - | chr7_4:995770-995789 | Msa1134480:CDS | 10.0% |
| !! | TTAATATTCAAATTTAACAT+TGG | + | chr7_4:996760-996779 | None:intergenic | 10.0% |
| !! | AAAGAATTACCATATATAAA+TGG | - | chr7_4:995131-995150 | Msa1134480:intron | 15.0% |
| !!! | GAAAATTTATTTTCAAGTTT+GGG | + | chr7_4:995291-995310 | None:intergenic | 15.0% |
| !!! | TGAAAATTTATTTTCAAGTT+TGG | + | chr7_4:995292-995311 | None:intergenic | 15.0% |
| !!! | GTTTTTTATTTTCATTTCAA+GGG | + | chr7_4:995408-995427 | None:intergenic | 15.0% |
| !!! | TGTTTTTTATTTTCATTTCA+AGG | + | chr7_4:995409-995428 | None:intergenic | 15.0% |
| !! | AATGAAAATAAAAAACAGTT+AGG | - | chr7_4:995412-995431 | Msa1134480:intron | 15.0% |
| !! | TATAAAAAAAAAGTCGAAAA+TGG | - | chr7_4:996201-996220 | Msa1134480:intron | 15.0% |
| !!! | TGTCTATACATTTTTTTTTT+GGG | - | chr7_4:996365-996384 | Msa1134480:intron | 15.0% |
| !!! | TTTATTTATTTTTCATGAGT+CGG | + | chr7_4:996709-996728 | None:intergenic | 15.0% |
| !!! | TAGTGTATATTTTATATTGA+AGG | + | chr7_4:997489-997508 | None:intergenic | 15.0% |
| !! | ATTTGCAATATGTATGATTT+GGG | + | chr7_4:995329-995348 | None:intergenic | 20.0% |
| !! | AATTTGCAATATGTATGATT+TGG | + | chr7_4:995330-995349 | None:intergenic | 20.0% |
| !! | CATACAAATTAAACCTAATT+GGG | - | chr7_4:995471-995490 | Msa1134480:intron | 20.0% |
| !! | TATTAAAAATGATCCCAATT+AGG | + | chr7_4:995487-995506 | None:intergenic | 20.0% |
| !! | AATATTTAACAATCCCATAT+GGG | + | chr7_4:995664-995683 | None:intergenic | 20.0% |
| !! | AAATATTTAACAATCCCATA+TGG | + | chr7_4:995665-995684 | None:intergenic | 20.0% |
| !!! | CTGTCTATACATTTTTTTTT+TGG | - | chr7_4:996364-996383 | Msa1134480:intron | 20.0% |
| !!! | AACCCAATTTTAATGATAAA+CGG | - | chr7_4:996653-996672 | Msa1134480:intron | 20.0% |
| !! | ATTACAACAAGGATATAAAT+GGG | + | chr7_4:996679-996698 | None:intergenic | 20.0% |
| !! | TATTACAACAAGGATATAAA+TGG | + | chr7_4:996680-996699 | None:intergenic | 20.0% |
| !!! | TTGAGCTTACATTTTTTTTA+CGG | - | chr7_4:996793-996812 | Msa1134480:intron | 20.0% |
| !! | ATGTATGTGTAATTATATGT+AGG | - | chr7_4:997187-997206 | Msa1134480:intron | 20.0% |
| !! | GTAACAATAATCTAAACATT+TGG | - | chr7_4:997435-997454 | Msa1134480:CDS | 20.0% |
| !!! | ATATTTTATATTGAAGGACA+AGG | + | chr7_4:997483-997502 | None:intergenic | 20.0% |
| !! | GTTGATCAAATTGAAGTTTT+TGG | + | chr7_4:995247-995266 | None:intergenic | 25.0% |
| !!! | AATTTATTTTCAAGTTTGGG+AGG | + | chr7_4:995288-995307 | None:intergenic | 25.0% |
| !!! | ATTAGGTTTAATTTGTATGG+AGG | + | chr7_4:995470-995489 | None:intergenic | 25.0% |
| !!! | CCAATTAGGTTTAATTTGTA+TGG | + | chr7_4:995473-995492 | None:intergenic | 25.0% |
| ! | CCATACAAATTAAACCTAAT+TGG | - | chr7_4:995470-995489 | Msa1134480:intron | 25.0% |
| !! | ATTAAAGCCTTTTCTTTCTA+GGG | - | chr7_4:995534-995553 | Msa1134480:intron | 25.0% |
| ! | TTCATTGACAAAATGAAACA+AGG | - | chr7_4:995975-995994 | Msa1134480:intron | 25.0% |
| ! | AACATGATATAGTTCATGTT+TGG | - | chr7_4:996027-996046 | Msa1134480:intron | 25.0% |
| !!! | CTTACATTTTTTTTACGGAT+GGG | - | chr7_4:996798-996817 | Msa1134480:intron | 25.0% |
| !!! | TTACATTTTTTTTACGGATG+GGG | - | chr7_4:996799-996818 | Msa1134480:intron | 25.0% |
| !!! | TTACATTTTTTTGACTGATG+TGG | - | chr7_4:996873-996892 | Msa1134480:intron | 25.0% |
| !!! | TTACATTTTTTTGACTGATG+AGG | - | chr7_4:996873-996892 | Msa1134480:intron | 25.0% |
| ! | TAGTATAGATTTCTGAATGT+TGG | + | chr7_4:997024-997043 | None:intergenic | 25.0% |
| !!! | GTGTAATATTTGTGTTGTTT+AGG | - | chr7_4:997260-997279 | Msa1134480:intron | 25.0% |
| !! | TGCTTTGATAATTTGCTCAT+TGG | + | chr7_4:994825-994844 | None:intergenic | 30.0% |
| TAAATCAATGAATCCTCTTG+TGG | - | chr7_4:994866-994885 | Msa1134480:intron | 30.0% | |
| AAAGACACTGAATTTGCAAA+GGG | + | chr7_4:994921-994940 | None:intergenic | 30.0% | |
| TACCCCTTAAGAGAAAATTA+GGG | - | chr7_4:995176-995195 | Msa1134480:intron | 30.0% | |
| ! | TGACCCTAATTTTCTCTTAA+GGG | + | chr7_4:995182-995201 | None:intergenic | 30.0% |
| ! | TTGACCCTAATTTTCTCTTA+AGG | + | chr7_4:995183-995202 | None:intergenic | 30.0% |
| GGAATGGTTTATTCTATAAG+TGG | + | chr7_4:995211-995230 | None:intergenic | 30.0% | |
| !!! | TCAAATTGAAGTTTTTGGCT+AGG | + | chr7_4:995242-995261 | None:intergenic | 30.0% |
| !! | TATTTTCATTTCAAGGGTGT+TGG | + | chr7_4:995402-995421 | None:intergenic | 30.0% |
| !! | GTTTAATTTGTATGGAGGTA+AGG | + | chr7_4:995465-995484 | None:intergenic | 30.0% |
| ! | GATTAAAGCCTTTTCTTTCT+AGG | - | chr7_4:995533-995552 | Msa1134480:intron | 30.0% |
| TCAAAAACCCTAGAAAGAAA+AGG | + | chr7_4:995544-995563 | None:intergenic | 30.0% | |
| ! | GTTATAGTCTTACATAAGCA+TGG | + | chr7_4:995729-995748 | None:intergenic | 30.0% |
| TAATCCAAAATCCTTAAGTC+CGG | - | chr7_4:995901-995920 | Msa1134480:intron | 30.0% | |
| ! | ATGCTTAATTTTGTGTCAAC+TGG | - | chr7_4:996274-996293 | Msa1134480:intron | 30.0% |
| AGACAGTGAGAATAAAGTAT+GGG | + | chr7_4:996350-996369 | None:intergenic | 30.0% | |
| TAGACAGTGAGAATAAAGTA+TGG | + | chr7_4:996351-996370 | None:intergenic | 30.0% | |
| GTGTATACATATGTGTGATT+TGG | - | chr7_4:996450-996469 | Msa1134480:intron | 30.0% | |
| !! | GTGATTTGGAAACTTTTGTT+TGG | - | chr7_4:996464-996483 | Msa1134480:intron | 30.0% |
| CAATGAAGGAAGGAAAAAAA+AGG | + | chr7_4:996511-996530 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTCCTTCCTTCAT+TGG | - | chr7_4:996509-996528 | Msa1134480:intron | 30.0% |
| ATTGGTTACCATCCTAATTA+AGG | + | chr7_4:996537-996556 | None:intergenic | 30.0% | |
| GGCCGTTTATCATTAAAATT+GGG | + | chr7_4:996658-996677 | None:intergenic | 30.0% | |
| TCGGAACTATTATTACAACA+AGG | + | chr7_4:996690-996709 | None:intergenic | 30.0% | |
| !!! | GCTTACATTTTTTTTACGGA+TGG | - | chr7_4:996797-996816 | Msa1134480:intron | 30.0% |
| !!! | ATTTTTTTGACTGATGTGGA+TGG | - | chr7_4:996877-996896 | Msa1134480:intron | 30.0% |
| !!! | ATTTTTTTGACTGATGAGGA+TGG | - | chr7_4:996950-996969 | Msa1134480:intron | 30.0% |
| TTTGCAGAAGTTTACAATCT+TGG | - | chr7_4:997343-997362 | Msa1134480:CDS | 30.0% | |
| TTCAATTGTCAACGAGAAAA+TGG | - | chr7_4:997388-997407 | Msa1134480:CDS | 30.0% | |
| ! | TGGTGTAATTGGAGATGTTT+TGG | - | chr7_4:994893-994912 | Msa1134480:exon | 35.0% |
| CAAAGACACTGAATTTGCAA+AGG | + | chr7_4:994922-994941 | None:intergenic | 35.0% | |
| TTGCAAATTCAGTGTCTTTG+AGG | - | chr7_4:994922-994941 | Msa1134480:CDS | 35.0% | |
| TGCAAATTCAGTGTCTTTGA+GGG | - | chr7_4:994923-994942 | Msa1134480:CDS | 35.0% | |
| AACAAAGAAGTCATCAACAG+TGG | - | chr7_4:994960-994979 | Msa1134480:CDS | 35.0% | |
| TTCGGGGATCCATTTATATA+TGG | + | chr7_4:995143-995162 | None:intergenic | 35.0% | |
| GTAGCTTTCTTATATCTTCG+GGG | + | chr7_4:995159-995178 | None:intergenic | 35.0% | |
| GGTAGCTTTCTTATATCTTC+GGG | + | chr7_4:995160-995179 | None:intergenic | 35.0% | |
| GGGTAGCTTTCTTATATCTT+CGG | + | chr7_4:995161-995180 | None:intergenic | 35.0% | |
| CTACCCCTTAAGAGAAAATT+AGG | - | chr7_4:995175-995194 | Msa1134480:intron | 35.0% | |
| ! | GACCCTAATTTTCTCTTAAG+GGG | + | chr7_4:995181-995200 | None:intergenic | 35.0% |
| !!! | TTCTAGGGTTTTTGAGTTTG+TGG | - | chr7_4:995549-995568 | Msa1134480:intron | 35.0% |
| ! | AGTTTGTGGCACTAATTTTC+AGG | - | chr7_4:995563-995582 | Msa1134480:intron | 35.0% |
| !!! | TGGCACTAATTTTCAGGTAA+TGG | - | chr7_4:995569-995588 | Msa1134480:intron | 35.0% |
| ! | GAATACCTGTATTGGTAAGT+GGG | - | chr7_4:995633-995652 | Msa1134480:intron | 35.0% |
| AGTAGTAAACTTGAGAACCT+AGG | + | chr7_4:995808-995827 | None:intergenic | 35.0% | |
| ATTAAGGATCCAATGAAGGA+AGG | + | chr7_4:996521-996540 | None:intergenic | 35.0% | |
| CCTAATTAAGGATCCAATGA+AGG | + | chr7_4:996525-996544 | None:intergenic | 35.0% | |
| CCTTCATTGGATCCTTAATT+AGG | - | chr7_4:996522-996541 | Msa1134480:intron | 35.0% | |
| CATTGGATCCTTAATTAGGA+TGG | - | chr7_4:996526-996545 | Msa1134480:intron | 35.0% | |
| AACCAATATTCCAGCTACTA+CGG | - | chr7_4:996550-996569 | Msa1134480:intron | 35.0% | |
| GGGCCGTTTATCATTAAAAT+TGG | + | chr7_4:996659-996678 | None:intergenic | 35.0% | |
| GCTAATATATTGTGCCTACA+AGG | + | chr7_4:997289-997308 | None:intergenic | 35.0% | |
| ACAATATATTAGCTCCAGGA+TGG | - | chr7_4:997296-997315 | Msa1134480:CDS | 35.0% | |
| TTGAAGGACAAGGATATGTT+TGG | + | chr7_4:997473-997492 | None:intergenic | 35.0% | |
| ATGAATCCTCTTGTGGTTTG+TGG | - | chr7_4:994873-994892 | Msa1134480:intron | 40.0% | |
| ATTACACCACAAACCACAAG+AGG | + | chr7_4:994882-994901 | None:intergenic | 40.0% | |
| ! | CTTGTGGTTTGTGGTGTAAT+TGG | - | chr7_4:994882-994901 | Msa1134480:intron | 40.0% |
| TTTCCACCAACTTGAACTCT+TGG | + | chr7_4:995017-995036 | None:intergenic | 40.0% | |
| !!! | GTTTTTGGCTAGGACAAAGA+AGG | + | chr7_4:995232-995251 | None:intergenic | 40.0% |
| !! | TTTCATTTCAAGGGTGTTGG+AGG | + | chr7_4:995399-995418 | None:intergenic | 40.0% |
| TACAGGTATTCCCTCATAGT+CGG | + | chr7_4:995624-995643 | None:intergenic | 40.0% | |
| CTATGAGGGAATACCTGTAT+TGG | - | chr7_4:995625-995644 | Msa1134480:intron | 40.0% | |
| ! | GGAATACCTGTATTGGTAAG+TGG | - | chr7_4:995632-995651 | Msa1134480:intron | 40.0% |
| TAGTTCCCACTTACCAATAC+AGG | + | chr7_4:995641-995660 | None:intergenic | 40.0% | |
| TAAGTGGGAACTACCCATAT+GGG | - | chr7_4:995648-995667 | Msa1134480:intron | 40.0% | |
| CTTACATAAGCATGGTGTCT+TGG | + | chr7_4:995721-995740 | None:intergenic | 40.0% | |
| ! | AATGGCATACGCTATTTCCT+AGG | - | chr7_4:995788-995807 | Msa1134480:intron | 40.0% |
| ! | ACTACCGGACTTAAGGATTT+TGG | + | chr7_4:995908-995927 | None:intergenic | 40.0% |
| TAGGATCATCCACTAACTAC+CGG | + | chr7_4:995923-995942 | None:intergenic | 40.0% | |
| CTTAACTAGTCACATGTGCT+TGG | + | chr7_4:996004-996023 | None:intergenic | 40.0% | |
| ACCAATATTCCAGCTACTAC+GGG | - | chr7_4:996551-996570 | Msa1134480:intron | 40.0% | |
| GGTACGTGCAAAATTCTCTT+GGG | - | chr7_4:996584-996603 | Msa1134480:intron | 40.0% | |
| AAAGTCCAAGACCAACATCA+GGG | - | chr7_4:997230-997249 | Msa1134480:intron | 40.0% | |
| ! | TGTTGTTTAGGCAACCTTGT+AGG | - | chr7_4:997272-997291 | Msa1134480:intron | 40.0% |
| AGGCACAATATATTAGCTCC+AGG | - | chr7_4:997292-997311 | Msa1134480:CDS | 40.0% | |
| ! | TTGAAATTTTGTCGCCATCC+TGG | + | chr7_4:997313-997332 | None:intergenic | 40.0% |
| TTGAAATAGAGAGCAGCAAC+AGG | + | chr7_4:997373-997392 | None:intergenic | 40.0% | |
| TGTCAACGAGAAAATGGTTC+TGG | - | chr7_4:997394-997413 | Msa1134480:CDS | 40.0% | |
| !! | GGTGGGTTGACTATTTGAGA+GGG | + | chr7_4:994996-995015 | None:intergenic | 45.0% |
| !! | TGGTGGGTTGACTATTTGAG+AGG | + | chr7_4:994997-995016 | None:intergenic | 45.0% |
| AACCCACCAAGAGTTCAAGT+TGG | - | chr7_4:995008-995027 | Msa1134480:CDS | 45.0% | |
| CACCAACTTGAACTCTTGGT+GGG | + | chr7_4:995013-995032 | None:intergenic | 45.0% | |
| !! | AAGTTGGTGGAAATGACCTC+AGG | - | chr7_4:995024-995043 | Msa1134480:CDS | 45.0% |
| AGGACTCTATACACTCTGGT+TGG | - | chr7_4:995044-995063 | Msa1134480:CDS | 45.0% | |
| TGGCTAGGACAAAGAAGGAA+TGG | + | chr7_4:995227-995246 | None:intergenic | 45.0% | |
| ACAGGTATTCCCTCATAGTC+GGG | + | chr7_4:995623-995642 | None:intergenic | 45.0% | |
| GTAAGTGGGAACTACCCATA+TGG | - | chr7_4:995647-995666 | Msa1134480:intron | 45.0% | |
| TCCTTAAGTCCGGTAGTTAG+TGG | - | chr7_4:995911-995930 | Msa1134480:intron | 45.0% | |
| TCCACTAACTACCGGACTTA+AGG | + | chr7_4:995915-995934 | None:intergenic | 45.0% | |
| CCAATATTCCAGCTACTACG+GGG | - | chr7_4:996552-996571 | Msa1134480:intron | 45.0% | |
| CGGTACGTGCAAAATTCTCT+TGG | - | chr7_4:996583-996602 | Msa1134480:intron | 45.0% | |
| GAAAGTCCAAGACCAACATC+AGG | - | chr7_4:997229-997248 | Msa1134480:intron | 45.0% | |
| ! | TGAATCCCTGATGTTGGTCT+TGG | + | chr7_4:997238-997257 | None:intergenic | 45.0% |
| ACACGTTGAATCCCTGATGT+TGG | + | chr7_4:997244-997263 | None:intergenic | 45.0% | |
| !! | CAACGAGAAAATGGTTCTGG+TGG | - | chr7_4:997397-997416 | Msa1134480:CDS | 45.0% |
| !! | GAGAAAATGGTTCTGGTGGA+AGG | - | chr7_4:997401-997420 | Msa1134480:CDS | 45.0% |
| !! | AAAATGGTTCTGGTGGAAGG+AGG | - | chr7_4:997404-997423 | Msa1134480:CDS | 45.0% |
| !! | TAAAAAAAATATATATTACT+AGG | + | chr7_4:995942-995961 | None:intergenic | 5.0% |
| CCACCAACTTGAACTCTTGG+TGG | + | chr7_4:995014-995033 | None:intergenic | 50.0% | |
| !! | CCACCAAGAGTTCAAGTTGG+TGG | - | chr7_4:995011-995030 | Msa1134480:CDS | 50.0% |
| CCAGAGTGTATAGAGTCCTG+AGG | + | chr7_4:995043-995062 | None:intergenic | 50.0% | |
| CCTCAGGACTCTATACACTC+TGG | - | chr7_4:995040-995059 | Msa1134480:CDS | 50.0% | |
| !! | CATTTCAAGGGTGTTGGAGG+TGG | + | chr7_4:995396-995415 | None:intergenic | 50.0% |
| !! | TTACTAGGGCTTGGTGCATC+AGG | + | chr7_4:995600-995619 | None:intergenic | 50.0% |
| ATAGTCGGGTTACTAGGGCT+TGG | + | chr7_4:995609-995628 | None:intergenic | 50.0% | |
| CCCTCATAGTCGGGTTACTA+GGG | + | chr7_4:995614-995633 | None:intergenic | 50.0% | |
| CCCTAGTAACCCGACTATGA+GGG | - | chr7_4:995611-995630 | Msa1134480:intron | 50.0% | |
| TCCCTCATAGTCGGGTTACT+AGG | + | chr7_4:995615-995634 | None:intergenic | 50.0% | |
| CCCCGTAGTAGCTGGAATAT+TGG | + | chr7_4:996555-996574 | None:intergenic | 50.0% | |
| GCCCTAGTAACCCGACTATG+AGG | - | chr7_4:995610-995629 | Msa1134480:intron | 55.0% | |
| AACGTTGTCCCCGTAGTAGC+TGG | + | chr7_4:996563-996582 | None:intergenic | 55.0% | |
| GCTACTACGGGGACAACGTT+CGG | - | chr7_4:996563-996582 | Msa1134480:intron | 55.0% | |
| !! | TGGTTCTGGTGGAAGGAGGA+TGG | - | chr7_4:997408-997427 | Msa1134480:CDS | 55.0% |
| !! | TCAAGGGTGTTGGAGGTGGC+TGG | + | chr7_4:995392-995411 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 994822 | 997516 | 994822 | ID=Msa1134480;Name=Msa1134480 |
| chr7_4 | mRNA | 994822 | 997516 | 994822 | ID=Msa1134480-mRNA-1;Parent=Msa1134480;Name=Msa1134480-mRNA-1;_AED=0.26;_eAED=0.26;_QI=3|1|1|1|0.75|0.6|5|57|189 |
| chr7_4 | exon | 994822 | 994871 | 994822 | ID=Msa1134480-mRNA-1:exon:378;Parent=Msa1134480-mRNA-1 |
| chr7_4 | exon | 994893 | 995129 | 994893 | ID=Msa1134480-mRNA-1:exon:377;Parent=Msa1134480-mRNA-1 |
| chr7_4 | exon | 995754 | 995794 | 995754 | ID=Msa1134480-mRNA-1:exon:376;Parent=Msa1134480-mRNA-1 |
| chr7_4 | exon | 996692 | 996753 | 996692 | ID=Msa1134480-mRNA-1:exon:375;Parent=Msa1134480-mRNA-1 |
| chr7_4 | exon | 997277 | 997516 | 997277 | ID=Msa1134480-mRNA-1:exon:374;Parent=Msa1134480-mRNA-1 |
| chr7_4 | five_prime_UTR | 997514 | 997516 | 997514 | ID=Msa1134480-mRNA-1:five_prime_utr;Parent=Msa1134480-mRNA-1 |
| chr7_4 | CDS | 997277 | 997513 | 997277 | ID=Msa1134480-mRNA-1:cds;Parent=Msa1134480-mRNA-1 |
| chr7_4 | CDS | 996692 | 996753 | 996692 | ID=Msa1134480-mRNA-1:cds;Parent=Msa1134480-mRNA-1 |
| chr7_4 | CDS | 995754 | 995794 | 995754 | ID=Msa1134480-mRNA-1:cds;Parent=Msa1134480-mRNA-1 |
| chr7_4 | CDS | 994900 | 995129 | 994900 | ID=Msa1134480-mRNA-1:cds;Parent=Msa1134480-mRNA-1 |
| chr7_4 | three_prime_UTR | 994893 | 994899 | 994893 | ID=Msa1134480-mRNA-1:three_prime_utr;Parent=Msa1134480-mRNA-1 |
| chr7_4 | three_prime_UTR | 994822 | 994871 | 994822 | ID=Msa1134480-mRNA-1:three_prime_utr;Parent=Msa1134480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
