AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096850 MtrunA17_Chr7g0221551 92.531 482 14 1 1 482 1 460 0.0 921
Msa1096850 MtrunA17_Chr3g0131731 66.667 486 128 5 9 482 1 464 0.0 669
Msa1096850 MtrunA17_Chr8g0385871 65.217 483 135 4 8 482 8 465 0.0 660
Msa1096850 MtrunA17_Chr3g0094811 60.965 456 153 2 24 479 24 454 0.0 590
Msa1096850 MtrunA17_Chr2g0304931 56.427 459 169 6 24 479 32 462 0.0 519
Msa1096850 MtrunA17_Chr1g0204191 46.491 456 192 6 26 480 87 491 6.79e-142 416
Msa1096850 MtrunA17_Chr3g0126051 45.633 458 214 7 31 480 34 464 1.12e-140 412
Msa1096850 MtrunA17_Chr5g0431301 44.518 456 222 7 31 479 30 461 5.16e-135 398
Msa1096850 MtrunA17_Chr3g0126031 44.298 456 219 8 31 479 29 456 1.15e-134 397
Msa1096850 MtrunA17_Chr7g0219051 40.987 466 227 9 29 480 34 465 3.08e-115 347
Msa1096850 MtrunA17_Chr4g0020241 40.879 455 226 9 29 479 72 487 2.28e-111 338
Msa1096850 MtrunA17_Chr3g0090331 40.132 456 230 9 29 479 73 490 2.70e-110 335
Msa1096850 MtrunA17_Chr3g0118851 40.929 452 221 12 29 475 76 486 6.99e-108 329
Msa1096850 MtrunA17_Chr3g0118841 40.929 452 220 11 29 475 77 486 6.09e-107 327
Msa1096850 MtrunA17_Chr3g0118881 40.215 465 222 14 29 479 76 498 9.30e-105 321
Msa1096850 MtrunA17_Chr4g0047861 40.000 465 230 10 31 479 54 485 1.11e-104 321
Msa1096850 MtrunA17_Chr1g0199991 37.166 487 253 13 3 479 13 456 1.21e-104 320
Msa1096850 MtrunA17_Chr4g0038311 35.412 497 271 11 1 481 3 465 1.81e-104 319
Msa1096850 MtrunA17_Chr2g0281621 38.661 463 237 9 31 479 36 465 3.41e-99 306
Msa1096850 MtrunA17_Chr1g0199971 38.178 461 240 13 29 479 31 456 1.34e-98 304
Msa1096850 MtrunA17_Chr1g0165811 53.962 265 96 3 29 293 29 267 2.31e-96 291
Msa1096850 MtrunA17_Chr3g0118891 40.044 452 192 14 29 475 76 453 5.71e-96 297
Msa1096850 MtrunA17_Chr3g0118861 39.130 460 198 13 29 475 74 464 3.77e-95 296
Msa1096850 MtrunA17_Chr1g0153941 37.292 480 231 12 29 480 76 513 9.55e-95 296
Msa1096850 MtrunA17_Chr1g0153881 38.428 458 229 13 29 480 88 498 1.30e-94 295
Msa1096850 MtrunA17_Chr4g0068841 37.996 479 231 13 29 479 37 477 1.50e-94 294
Msa1096850 MtrunA17_Chr3g0118831 38.596 456 203 10 29 479 76 459 2.01e-94 293
Msa1096850 MtrunA17_Chr2g0309541 36.404 456 246 12 34 479 42 463 5.44e-94 293
Msa1096850 MtrunA17_Chr2g0309521 34.156 486 277 12 3 479 11 462 1.78e-93 291
Msa1096850 MtrunA17_Chr2g0309511 34.362 486 276 12 3 479 11 462 3.05e-93 291
Msa1096850 MtrunA17_Chr2g0318911 34.350 492 257 15 1 475 17 459 1.79e-87 276
Msa1096850 MtrunA17_Chr2g0281641 37.136 412 214 10 82 479 7 387 7.81e-81 256
Msa1096850 MtrunA17_Chr4g0068861 34.651 430 221 14 29 434 83 476 9.37e-75 243
Msa1096850 MtrunA17_Chr1g0165821 62.431 181 66 1 301 481 2 180 3.72e-73 229
Msa1096850 MtrunA17_Chr7g0229651 51.485 202 96 1 228 427 1 202 2.37e-67 214
Msa1096850 MtrunA17_Chr1g0153931 50.244 205 74 4 30 228 75 257 6.53e-60 197
Msa1096850 MtrunA17_Chr7g0234051 31.068 515 251 17 26 478 23 495 3.10e-59 202
Msa1096850 MtrunA17_Chr8g0338461 29.533 535 273 19 3 478 6 495 3.22e-57 197
Msa1096850 MtrunA17_Chr7g0249431 30.112 538 276 22 1 478 1 498 1.02e-53 188
Msa1096850 MtrunA17_Chr1g0171411 28.000 450 258 16 42 475 81 480 2.66e-48 173
Msa1096850 MtrunA17_Chr1g0199171 28.178 472 267 17 25 475 66 486 4.03e-47 170
Msa1096850 MtrunA17_Chr4g0009701 26.695 472 285 16 29 478 38 470 1.75e-46 167
Msa1096850 MtrunA17_Chr4g0009681 26.721 494 303 16 6 478 12 467 4.47e-46 166
Msa1096850 MtrunA17_Chr4g0009711 24.848 495 309 15 7 478 16 470 6.82e-45 163
Msa1096850 MtrunA17_Chr3g0133011 26.901 513 301 15 3 478 21 496 6.87e-45 164
Msa1096850 MtrunA17_Chr7g0234041 31.209 455 228 18 31 437 27 444 1.11e-44 163
Msa1096850 MtrunA17_Chr4g0009651 26.050 476 289 17 26 478 35 470 3.84e-44 161
Msa1096850 MtrunA17_Chr4g0009661 26.819 481 279 16 26 478 35 470 4.21e-44 161
Msa1096850 MtrunA17_Chr2g0327401 27.912 455 246 20 46 476 102 498 7.14e-43 159
Msa1096850 MtrunA17_Chr4g0028271 28.256 453 254 17 41 475 94 493 9.16e-43 158
Msa1096850 MtrunA17_Chr2g0285351 25.510 490 301 15 16 478 17 469 1.02e-42 157
Msa1096850 MtrunA17_Chr2g0285371 25.800 469 288 13 34 478 37 469 1.87e-42 157
Msa1096850 MtrunA17_Chr4g0009671 25.376 465 283 14 37 478 12 435 2.55e-41 153
Msa1096850 MtrunA17_Chr4g0028261 28.381 451 270 16 36 476 109 516 2.02e-40 152
Msa1096850 MtrunA17_Chr2g0285381 26.850 473 271 16 34 478 40 465 3.37e-40 150
Msa1096850 MtrunA17_Chr4g0009641 25.410 488 291 16 7 478 16 446 3.22e-39 147
Msa1096850 MtrunA17_Chr4g0028241 27.869 488 262 20 14 476 68 490 1.07e-38 147
Msa1096850 MtrunA17_Chr4g0028281 26.889 450 256 16 46 476 97 492 1.49e-38 146
Msa1096850 MtrunA17_Chr3g0093971 24.742 485 299 15 12 473 8 449 5.12e-38 144
Msa1096850 MtrunA17_Chr2g0327381 25.581 473 279 17 46 476 96 537 6.08e-37 142
Msa1096850 MtrunA17_Chr2g0327371 25.786 477 258 19 47 476 86 513 9.48e-36 139
Msa1096850 MtrunA17_Chr5g0447441 25.758 462 281 13 21 473 24 432 3.93e-31 125
Msa1096850 MtrunA17_Chr7g0229631 61.628 86 32 1 29 114 32 116 2.82e-30 115
Msa1096850 MtrunA17_Chr1g0153921 31.224 237 141 7 244 480 3 217 1.54e-27 109
Msa1096850 MtrunA17_Chr4g0044051 25.727 447 256 16 46 473 47 436 8.57e-26 109
Msa1096850 MtrunA17_Chr7g0229611 55.696 79 34 1 29 107 24 101 1.94e-23 94.7
Msa1096850 MtrunA17_Chr7g0229621 55.696 79 34 1 29 107 24 101 1.22e-22 92.4
Msa1096850 MtrunA17_Chr4g0009721 25.000 296 193 12 195 478 141 419 8.92e-18 85.5
Msa1096850 MtrunA17_Chr4g0009721 29.861 144 91 4 6 140 11 153 3.54e-14 74.3
Msa1096850 MtrunA17_Chr4g0027731 25.000 456 277 16 47 474 36 454 1.25e-17 85.1
Msa1096850 MtrunA17_Chr7g0264221 43.333 90 49 2 394 482 13 101 1.78e-17 78.2
Msa1096850 MtrunA17_Chr2g0279371 27.638 199 101 5 31 223 28 189 3.39e-17 79.7
Msa1096850 MtrunA17_Chr4g0006541 40.816 98 55 1 205 302 7 101 1.19e-16 75.5
Msa1096850 MtrunA17_Chr2g0281631 53.846 52 24 0 31 82 46 97 1.43e-13 67.4
Msa1096850 MtrunA17_Chr7g0229641 58.140 43 18 0 178 220 43 85 4.27e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096850 AT1G28110.1 75.877 456 88 1 27 482 28 461 0.0 728
Msa1096850 AT1G28110.2 75.877 456 88 1 27 482 28 461 0.0 728
Msa1096850 AT2G33530.1 67.967 487 129 3 1 482 1 465 0.0 701
Msa1096850 AT1G43780.1 47.609 460 207 8 31 481 38 472 8.49e-144 421
Msa1096850 AT2G12480.3 43.354 489 235 11 5 481 1 459 4.51e-134 395
Msa1096850 AT5G42240.1 44.635 466 225 8 23 479 23 464 2.76e-133 394
Msa1096850 AT5G42230.1 42.469 478 242 8 13 481 9 462 5.28e-132 390
Msa1096850 AT5G42230.2 42.469 478 242 8 13 481 9 462 5.28e-132 390
Msa1096850 AT2G12480.4 42.300 487 219 11 5 481 1 435 3.08e-127 377
Msa1096850 AT2G12480.1 41.684 487 220 11 5 481 1 433 1.44e-124 370
Msa1096850 AT2G12480.2 41.598 488 220 12 5 481 1 434 5.87e-123 366
Msa1096850 AT2G24010.1 40.435 460 230 10 31 482 31 454 2.75e-112 339
Msa1096850 AT3G63470.1 40.839 453 229 9 31 480 82 498 7.17e-110 335
Msa1096850 AT3G02110.1 38.854 471 235 10 29 480 36 472 1.31e-109 333
Msa1096850 AT4G30610.1 37.872 470 241 11 29 482 31 465 3.29e-108 329
Msa1096850 AT2G05850.1 38.511 470 249 10 17 480 50 485 1.22e-107 328
Msa1096850 AT2G24010.2 38.947 475 231 11 31 482 31 469 4.64e-107 327
Msa1096850 AT2G24000.1 38.689 473 234 14 29 482 29 464 2.66e-106 324
Msa1096850 AT5G08260.1 36.257 513 250 12 4 481 8 478 6.51e-105 321
Msa1096850 AT3G07990.1 38.710 465 232 12 29 479 32 457 2.91e-103 317
Msa1096850 AT3G17180.1 39.130 483 238 10 19 479 27 475 4.42e-103 317
Msa1096850 AT2G35780.1 36.752 468 251 11 21 479 20 451 1.87e-102 314
Msa1096850 AT2G24010.3 37.000 500 231 12 31 482 2 465 1.07e-101 313
Msa1096850 AT2G35770.1 36.853 483 261 11 4 479 13 458 2.45e-101 311
Msa1096850 AT4G30810.1 36.049 491 259 13 6 478 8 461 3.96e-101 311
Msa1096850 AT3G52010.1 39.606 457 231 14 31 479 65 484 4.26e-100 309
Msa1096850 AT1G61130.1 39.093 463 234 14 31 479 32 460 8.80e-100 308
Msa1096850 AT1G11080.1 36.884 507 255 12 5 479 16 489 1.83e-99 308
Msa1096850 AT1G11080.2 36.884 507 255 12 5 479 16 489 2.72e-99 307
Msa1096850 AT4G15100.1 37.238 478 246 11 22 478 36 480 2.17e-98 305
Msa1096850 AT5G23210.1 34.221 488 254 11 23 479 44 495 5.69e-95 296
Msa1096850 AT3G52000.1 39.301 458 229 15 31 480 64 480 9.03e-95 295
Msa1096850 AT3G52020.1 37.418 457 240 12 31 479 80 498 5.04e-92 289
Msa1096850 AT3G17180.2 37.671 438 217 10 19 434 27 430 2.23e-85 270
Msa1096850 AT5G23210.3 32.957 443 231 10 23 434 44 451 2.29e-80 257
Msa1096850 AT2G24010.4 36.788 386 190 9 31 393 2 356 5.87e-74 237
Msa1096850 AT5G23210.5 33.102 432 222 11 79 479 5 400 9.26e-74 238
Msa1096850 AT5G23210.2 32.944 428 220 11 83 479 8 399 1.52e-72 235
Msa1096850 AT3G25420.1 31.879 527 265 17 9 478 5 494 1.62e-64 217
Msa1096850 AT4G12910.1 32.041 490 258 14 31 475 35 494 6.08e-62 210
Msa1096850 AT5G23210.4 31.332 383 197 10 83 434 8 355 4.65e-58 196
Msa1096850 AT2G22990.1 28.166 458 266 13 34 478 26 433 4.96e-55 190
Msa1096850 AT1G33540.1 28.692 474 274 16 31 478 29 464 7.71e-55 190
Msa1096850 AT1G73300.1 28.009 457 266 16 34 478 36 441 3.04e-53 186
Msa1096850 AT1G73300.2 28.009 457 266 16 34 478 36 441 3.04e-53 186
Msa1096850 AT1G73280.1 27.743 483 284 17 8 478 12 441 8.41e-53 184
Msa1096850 AT1G33540.2 28.289 456 264 15 48 478 4 421 2.56e-52 182
Msa1096850 AT1G73290.1 29.039 458 258 16 34 478 35 438 1.94e-51 181
Msa1096850 AT3G12230.1 27.778 468 259 14 31 478 27 435 1.59e-50 178
Msa1096850 AT5G36180.1 27.609 460 270 16 31 478 33 441 2.49e-50 177
Msa1096850 AT3G12240.1 28.211 475 248 16 31 478 28 436 1.00e-49 176
Msa1096850 AT5G09640.1 28.000 475 279 15 31 478 27 465 1.56e-49 176
Msa1096850 AT3G12203.3 27.193 456 270 11 34 478 12 416 1.82e-49 175
Msa1096850 AT3G12203.1 27.193 456 270 11 34 478 33 437 2.36e-49 175
Msa1096850 AT3G56540.1 50.000 176 63 3 31 204 80 232 7.46e-49 169
Msa1096850 AT2G22990.5 27.293 458 261 14 34 478 26 424 8.41e-49 173
Msa1096850 AT2G22990.4 28.140 430 251 11 34 452 26 408 1.69e-48 172
Msa1096850 AT2G22990.3 28.074 431 252 11 34 453 26 409 1.95e-48 173
Msa1096850 AT4G12910.2 30.820 451 237 14 31 436 35 455 2.07e-48 173
Msa1096850 AT2G22970.1 27.983 461 261 15 34 478 28 433 2.48e-48 172
Msa1096850 AT2G23000.1 27.195 467 267 14 31 478 25 437 2.58e-48 172
Msa1096850 AT2G23000.2 27.195 467 267 14 31 478 25 437 2.58e-48 172
Msa1096850 AT3G10450.1 27.549 461 269 16 31 478 29 437 3.24e-48 172
Msa1096850 AT3G12220.1 27.451 459 272 13 31 478 27 435 1.90e-47 170
Msa1096850 AT3G10450.2 27.540 443 257 15 48 478 4 394 6.15e-47 167
Msa1096850 AT2G22920.2 27.350 468 257 17 34 478 28 435 8.63e-47 168
Msa1096850 AT2G24000.2 33.221 298 168 11 201 482 119 401 1.24e-46 167
Msa1096850 AT2G24000.2 52.222 90 40 2 29 115 29 118 3.99e-21 95.9
Msa1096850 AT2G23010.1 25.306 490 293 13 8 478 2 437 1.92e-46 167
Msa1096850 AT2G22980.1 25.983 458 270 15 34 478 29 430 2.02e-46 167
Msa1096850 AT1G73310.1 27.669 459 265 17 34 478 36 441 3.37e-46 167
Msa1096850 AT3G12220.2 27.664 441 259 13 48 478 15 405 4.52e-46 165
Msa1096850 AT2G23010.2 25.102 490 294 13 8 478 2 437 6.71e-46 166
Msa1096850 AT3G12203.2 26.744 430 254 10 59 478 1 379 1.04e-45 164
Msa1096850 AT1G73270.2 25.652 460 279 14 31 478 33 441 1.43e-45 165
Msa1096850 AT1G73270.1 25.652 460 279 14 31 478 33 441 1.73e-45 165
Msa1096850 AT3G45010.1 27.391 460 263 19 36 476 92 499 1.59e-44 164
Msa1096850 AT5G22980.1 27.009 448 267 16 41 476 95 494 4.36e-42 157
Msa1096850 AT2G22970.4 27.752 436 245 14 34 453 28 409 8.41e-42 154
Msa1096850 AT2G22970.3 27.816 435 244 14 34 452 28 408 2.83e-41 153
Msa1096850 AT3G10410.1 26.681 461 273 16 28 474 84 493 1.05e-40 153
Msa1096850 AT3G10450.4 26.835 436 255 15 31 453 29 413 1.10e-40 151
Msa1096850 AT2G22980.2 25.866 433 253 14 34 453 29 406 1.80e-40 150
Msa1096850 AT2G22980.4 25.624 441 260 14 34 461 29 414 2.08e-40 150
Msa1096850 AT3G10450.3 26.794 418 243 14 48 453 4 370 2.25e-39 146
Msa1096850 AT1G73290.3 28.297 417 233 15 34 437 35 398 2.69e-39 147
Msa1096850 AT1G73310.2 26.777 422 243 16 34 441 36 405 3.21e-36 139
Msa1096850 AT2G22920.1 26.932 427 230 16 34 437 28 395 3.62e-36 139
Msa1096850 AT2G22990.6 26.301 365 219 9 117 478 2 319 6.00e-35 133
Msa1096850 AT1G73280.4 26.190 378 225 13 105 478 12 339 6.37e-35 134
Msa1096850 AT2G22990.2 26.027 365 220 9 117 478 2 319 2.90e-34 131
Msa1096850 AT1G73290.2 31.818 242 131 6 34 265 35 252 5.90e-34 130
Msa1096850 AT1G73280.2 27.688 372 211 13 8 367 12 337 1.24e-33 131
Msa1096850 AT5G36180.5 26.190 378 225 13 105 478 12 339 4.26e-33 128
Msa1096850 AT5G36180.3 26.190 378 225 13 105 478 12 339 4.26e-33 128
Msa1096850 AT1G73280.3 26.099 364 215 13 119 478 1 314 7.52e-32 124
Msa1096850 AT3G12220.3 27.390 387 225 11 31 401 27 373 2.63e-31 124
Msa1096850 AT2G22920.4 31.837 245 125 7 34 264 28 244 6.64e-30 119
Msa1096850 AT2G22970.2 31.837 245 124 7 34 264 28 243 2.74e-29 117
Msa1096850 AT2G22980.3 26.471 340 193 11 34 362 29 322 1.54e-28 116
Msa1096850 AT1G15000.1 25.959 443 265 16 46 478 37 426 9.64e-27 112
Msa1096850 AT5G36180.2 25.496 353 210 12 105 453 12 315 2.90e-26 109
Msa1096850 AT1G73310.3 25.073 343 200 13 105 441 12 303 1.41e-20 92.8
Msa1096850 AT5G36180.4 25.000 336 199 12 105 436 12 298 1.44e-20 93.2
Msa1096850 AT2G22980.5 22.807 342 205 11 117 453 2 289 1.81e-20 92.0
Msa1096850 AT5G22960.1 29.688 192 90 5 36 224 25 174 3.28e-19 85.9
Msa1096850 AT2G27920.1 23.701 481 299 17 9 462 6 445 5.42e-18 86.7
Msa1096850 AT2G22920.3 25.188 266 158 10 222 478 23 256 1.24e-17 83.2
Msa1096850 AT2G22960.1 26.950 141 96 3 338 478 51 184 2.48e-13 68.9

Find 96 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAATTTGTGATCTTATT+AGG 0.075907 7_3:-21922243 None:intergenic
GAGAAGTTGTTTAATTTAAA+AGG 0.202110 7_3:+21924068 Msa1096850:CDS
GGTGGTTGGACTCAAGTTTA+TGG 0.215056 7_3:+21926510 Msa1096850:CDS
TTTCCAAACCTCTTGTTCTT+TGG 0.225038 7_3:+21922373 Msa1096850:CDS
ATCTAATCTTCTTGCAAAAC+TGG 0.232198 7_3:+21923629 Msa1096850:CDS
AAAACCAAGACAAATCTTTA+AGG 0.238128 7_3:-21923570 None:intergenic
TTTCAGAAAATGGGCCATTT+AGG 0.242646 7_3:+21922532 Msa1096850:CDS
GCCTCTCCTTTAGGCCTAAA+TGG 0.253449 7_3:-21922546 None:intergenic
AAGCTTCTGTTTCTGTATTC+AGG 0.258582 7_3:-21923664 None:intergenic
CCTTACAGGGTGTGGTTTGC+AGG 0.266155 7_3:+21926293 Msa1096850:CDS
CCTCTTGTTCTTTGGCTCAA+TGG 0.289869 7_3:+21922381 Msa1096850:CDS
TGAATACCACTGTGCCTTAC+AGG 0.289888 7_3:+21926279 Msa1096850:CDS
ATTCAAGAGCTGAGTTCTTT+TGG 0.300704 7_3:+21924468 Msa1096850:CDS
CTAACCAAAGCCTCTCCTTT+AGG 0.326445 7_3:-21922555 None:intergenic
GTAAATTTGTGATCTTATTA+GGG 0.331087 7_3:-21922242 None:intergenic
TATGCTCCAATTCAACAAAA+AGG 0.337276 7_3:+21924046 Msa1096850:CDS
AGACTGTCAATTATCTTAAC+AGG 0.354537 7_3:+21925048 Msa1096850:CDS
GGGCCTGGTTGTTCTTCTCT+TGG 0.358083 7_3:+21922498 Msa1096850:intron
GCTCATTACACTTGAACAAA+TGG 0.365760 7_3:-21924588 None:intergenic
TCTGTTGCAAATTCTAGAAC+TGG 0.381458 7_3:-21924440 None:intergenic
CAAAGAGAATTACCTGTTGC+AGG 0.384871 7_3:-21925126 None:intergenic
GGTGTAAATGACAAGATTAC+AGG 0.386172 7_3:+21923247 Msa1096850:CDS
CTGTTTAAGTCGTTCTTAGA+AGG 0.387828 7_3:+21926609 Msa1096850:CDS
TAGGCCTAAAGGAGAGGCTT+TGG 0.395103 7_3:+21922551 Msa1096850:CDS
CAAGGCAGGAGTTCCAGTTT+TGG 0.395452 7_3:+21925636 Msa1096850:CDS
GCTTTACATGCACATCTGAT+TGG 0.395553 7_3:+21925086 Msa1096850:CDS
CACCTGTGTTCCAGCTGAAC+TGG 0.397389 7_3:-21922581 None:intergenic
TACTATCATTTGCAACAGTT+AGG 0.406670 7_3:+21926538 Msa1096850:CDS
AACACTAATCAAAATTCTTC+TGG 0.409071 7_3:-21926642 None:intergenic
TAAGAAAATCCTACTCCAAT+TGG 0.412031 7_3:-21923199 None:intergenic
AGCTTCTGTTTCTGTATTCA+GGG 0.412704 7_3:-21923663 None:intergenic
TAGAACTTTAGTACATCAAT+TGG 0.417903 7_3:+21926241 Msa1096850:CDS
AGGTCATTATGTTCCTCAAT+TGG 0.418352 7_3:+21924016 Msa1096850:intron
ACTATCATTTGCAACAGTTA+GGG 0.420978 7_3:+21926539 Msa1096850:CDS
ACATACCTGTAGACCAAAAC+TGG 0.425053 7_3:-21925649 None:intergenic
TTGTCTTTCTCTTTATAGCC+AGG 0.426433 7_3:+21923602 Msa1096850:CDS
GAGCCAAAGAACAAGAGGTT+TGG 0.427927 7_3:-21922376 None:intergenic
GGTGTGGTTTGCAGGCCAAC+AGG 0.436379 7_3:+21926301 Msa1096850:CDS
GGTTGTTCTTCTCTTGGTGT+TGG 0.436843 7_3:+21922504 Msa1096850:CDS
TACTTGTTTCTGTACTAACT+TGG 0.447886 7_3:-21924610 None:intergenic
TGGTTAGGAACCAGTTCAGC+TGG 0.449673 7_3:+21922571 Msa1096850:CDS
CCTGCAAACCACACCCTGTA+AGG 0.452020 7_3:-21926293 None:intergenic
CGATCTCTCAGGCTGTGAAA+AGG 0.457438 7_3:-21926580 None:intergenic
ATAGATGGTCTCCCTGCAAC+AGG 0.460659 7_3:+21925114 Msa1096850:CDS
CTCATTACACTTGAACAAAT+GGG 0.461870 7_3:-21924587 None:intergenic
CTTTATGTCAATCAGTGTGT+TGG 0.463466 7_3:+21925558 Msa1096850:intron
TTGCCGACAACCGTGATTGT+TGG 0.469285 7_3:-21925607 None:intergenic
GATTCAGTTATTCCATTGAC+TGG 0.474345 7_3:+21926215 Msa1096850:CDS
ACCGATACTTCAACTTATGA+AGG 0.478298 7_3:+21923226 Msa1096850:CDS
CACCTGAGTATTGAGGACTT+TGG 0.483689 7_3:-21924693 None:intergenic
AAAGTTCTACTTCCAGTCAA+TGG 0.487618 7_3:-21926227 None:intergenic
CAAGAAGATTAGATTATCCC+TGG 0.488331 7_3:-21923620 None:intergenic
TGTACCTTAAAGATTTGTCT+TGG 0.488551 7_3:+21923566 Msa1096850:CDS
AGAGGCAAATATGTTGTACT+TGG 0.493990 7_3:+21923171 Msa1096850:intron
CTAAAGGAGAGGCTTTGGTT+AGG 0.494226 7_3:+21922556 Msa1096850:CDS
ACTTGAACAAATGGGAGAAA+CGG 0.502123 7_3:-21924579 None:intergenic
ATTAGGGTGTGAAACTGAAA+AGG 0.507864 7_3:-21922226 None:intergenic
AATCAAAATTCTTCTGGTAG+AGG 0.510276 7_3:-21926636 None:intergenic
CAGAAGATATACAAACATCA+AGG 0.511989 7_3:-21924658 None:intergenic
ATCTGATTGGAGTACATAGA+TGG 0.512377 7_3:+21925099 Msa1096850:CDS
AACAGCACAAGCGATCTCTC+AGG 0.518018 7_3:-21926591 None:intergenic
GATCTCTCAGGCTGTGAAAA+GGG 0.519136 7_3:-21926579 None:intergenic
TTGTACTTGGAATCACCAAT+TGG 0.528164 7_3:+21923184 Msa1096850:CDS
ACCTTCATAAGTTGAAGTAT+CGG 0.530666 7_3:-21923227 None:intergenic
GGATTATGAGTTGCGTGACT+TGG 0.530856 7_3:+21925579 Msa1096850:CDS
AACCAGTTCAGCTGGAACAC+AGG 0.532001 7_3:+21922579 Msa1096850:CDS
ATCGTAGGAGAGAGCTATGC+CGG 0.540126 7_3:+21923691 Msa1096850:CDS
AATGGGCCATTTAGGCCTAA+AGG 0.545330 7_3:+21922540 Msa1096850:CDS
CCACTGTGCCTTACAGGGTG+TGG 0.547254 7_3:+21926285 Msa1096850:CDS
ATACCAACAATCACGGTTGT+CGG 0.552329 7_3:+21925604 Msa1096850:CDS
TGTCTTTCTCTTTATAGCCA+GGG 0.554123 7_3:+21923603 Msa1096850:CDS
TGAGAAGATTTGATTTAACA+AGG 0.559426 7_3:-21926668 None:intergenic
AAATGTAACATGACAGGGAA+AGG 0.562297 7_3:-21926761 None:intergenic
ATAAACTCACCTGAGTATTG+AGG 0.563913 7_3:-21924700 None:intergenic
CTTGTTCTTTGGCTCAATGG+AGG 0.565339 7_3:+21922384 Msa1096850:CDS
TTGGAATCACCAATTGGAGT+AGG 0.570704 7_3:+21923190 Msa1096850:CDS
AAATCAACATGTGGTTGACC+AGG 0.571157 7_3:-21922264 None:intergenic
AGCATAAGCTCAGCCAATTG+AGG 0.572712 7_3:-21924029 None:intergenic
GCCATTTAGGCCTAAAGGAG+AGG 0.574984 7_3:+21922545 Msa1096850:CDS
CAAATAGCAAGTGACTGAAA+CGG 0.583402 7_3:+21925004 Msa1096850:intron
CCATTGAGCCAAAGAACAAG+AGG 0.585597 7_3:-21922381 None:intergenic
GAATACCACTGTGCCTTACA+GGG 0.587962 7_3:+21926280 Msa1096850:CDS
GAGAAGATTTGATTTAACAA+GGG 0.595692 7_3:-21926667 None:intergenic
TGCAGCAACACACATTGCAA+TGG 0.598224 7_3:-21922184 None:intergenic
CTATCATTTGCAACAGTTAG+GGG 0.601913 7_3:+21926540 Msa1096850:CDS
ACACCAAGAGAAGAACAACC+AGG 0.602850 7_3:-21922501 None:intergenic
AATAAGATCACAAATTTACC+TGG 0.604906 7_3:+21922246 Msa1096850:CDS
AAAGAGAATTACCTGTTGCA+GGG 0.615032 7_3:-21925125 None:intergenic
AGAAGATATACAAACATCAA+GGG 0.621855 7_3:-21924657 None:intergenic
AACCAAAGTCCTCAATACTC+AGG 0.621880 7_3:+21924691 Msa1096850:CDS
GGTTGTCGGCAAGCTAGTCA+AGG 0.630864 7_3:+21925618 Msa1096850:CDS
ACAACAAAGTAGTGAAGACA+TGG 0.635514 7_3:-21922160 None:intergenic
CTTGGAGATACCAACAATCA+CGG 0.653663 7_3:+21925597 Msa1096850:CDS
AACTGATGAAAATCAACATG+TGG 0.670035 7_3:-21922273 None:intergenic
AACAGAAGCTTGTTCATCGT+AGG 0.672452 7_3:+21923676 Msa1096850:CDS
TATGTGAGAGAATACTACAA+CGG 0.740626 7_3:+21924554 Msa1096850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAAAAAGTTTTTAAAATA+GGG - chr7_3:21922698-21922717 None:intergenic 10.0%
!! ACTTCAAAAAAAAAAAAAAT+TGG + chr7_3:21923018-21923037 Msa1096850:intron 10.0%
!!! TTTATTTTCATATACAATAT+TGG - chr7_3:21925920-21925939 None:intergenic 10.0%
!! TTGAACAAAAAATATAATAA+GGG - chr7_3:21926402-21926421 None:intergenic 10.0%
!! TTTGAACAAAAAATATAATA+AGG - chr7_3:21926403-21926422 None:intergenic 10.0%
!!! TTTTTTGTTCAAAATATTAA+TGG + chr7_3:21926410-21926429 Msa1096850:intron 10.0%
!!! TAATCATATTTTAAGTAAAA+TGG + chr7_3:21926815-21926834 Msa1096850:three_prime_UTR 10.0%
!!! CGTAAAAAAGTTTTTAAAAT+AGG - chr7_3:21922699-21922718 None:intergenic 15.0%
!! ATAAAAATGTTTGAATCAAA+TGG - chr7_3:21923346-21923365 None:intergenic 15.0%
!! TTAGAATATTCATAACATAA+GGG - chr7_3:21923767-21923786 None:intergenic 15.0%
!!! TTTAGAATATTCATAACATA+AGG - chr7_3:21923768-21923787 None:intergenic 15.0%
!!! TATTTACATTTTTCAATTCT+AGG + chr7_3:21923877-21923896 Msa1096850:intron 15.0%
!!! TATTACTTTGTTTATTTCTT+TGG + chr7_3:21923935-21923954 Msa1096850:intron 15.0%
!! AATAAGAAAAGAAGAATAAT+TGG - chr7_3:21924121-21924140 None:intergenic 15.0%
!! TAAAATACAAACTTCAAATT+TGG - chr7_3:21924813-21924832 None:intergenic 15.0%
!! CAATTAATTATGATTTATGA+AGG - chr7_3:21926168-21926187 None:intergenic 15.0%
!! GTAAATTTGTGATCTTATTA+GGG - chr7_3:21922245-21922264 None:intergenic 20.0%
!! TCATATAAATGTTCATGTAT+AGG - chr7_3:21922879-21922898 None:intergenic 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG + chr7_3:21922909-21922928 Msa1096850:intron 20.0%
!! TCATTGAACAAAATTTATGT+AGG + chr7_3:21922990-21923009 Msa1096850:intron 20.0%
!!! TTATTCTAAGATCAAATAGA+AGG - chr7_3:21923291-21923310 None:intergenic 20.0%
!! ATTATGTTATGCAAAACTTT+AGG - chr7_3:21923460-21923479 None:intergenic 20.0%
!!! ATGATAAGTTATTGTTTTAC+CGG - chr7_3:21923713-21923732 None:intergenic 20.0%
!!! GTGTTTTGTAATTTATCATT+AGG + chr7_3:21923996-21924015 Msa1096850:intron 20.0%
!!! GAGAAGTTGTTTAATTTAAA+AGG + chr7_3:21924068-21924087 Msa1096850:CDS 20.0%
!! ATTGTAAAAACTGAAATTGA+AGG - chr7_3:21924930-21924949 None:intergenic 20.0%
!!! TTTAAAATCATGTTTCTTGT+AGG - chr7_3:21925161-21925180 None:intergenic 20.0%
!!! AGAAACATGATTTTAAATTG+CGG + chr7_3:21925164-21925183 Msa1096850:intron 20.0%
!! AAAAATTCTACATTGAAATC+TGG + chr7_3:21925408-21925427 Msa1096850:intron 20.0%
!!! AACATGTTTTATGATAAGAA+AGG - chr7_3:21925491-21925510 None:intergenic 20.0%
!!! TTTAGAATAATCTTGTGAAT+AGG + chr7_3:21925837-21925856 Msa1096850:intron 20.0%
!!! GTTTAATGGATTACTTAATT+AGG - chr7_3:21926069-21926088 None:intergenic 20.0%
!! ATTAAGTAATCCATTAAACT+TGG + chr7_3:21926070-21926089 Msa1096850:intron 20.0%
!! TGAAAAGTTAAATTTACATC+TGG - chr7_3:21926104-21926123 None:intergenic 20.0%
!! TAAAAAAATGTAACATGACA+GGG - chr7_3:21926769-21926788 None:intergenic 20.0%
!! ATAAAAAAATGTAACATGAC+AGG - chr7_3:21926770-21926789 None:intergenic 20.0%
! GGTAAATTTGTGATCTTATT+AGG - chr7_3:21922246-21922265 None:intergenic 25.0%
! AATAAGATCACAAATTTACC+TGG + chr7_3:21922246-21922265 Msa1096850:CDS 25.0%
!!! TTTGTTTCATGTTGTTTTGA+AGG + chr7_3:21922477-21922496 Msa1096850:intron 25.0%
!!! TTGTTTCATGTTGTTTTGAA+GGG + chr7_3:21922478-21922497 Msa1096850:intron 25.0%
! ATACAAAATTAGTGTAGACA+AGG - chr7_3:21922626-21922645 None:intergenic 25.0%
! TCTATAAGGACTAAATACAT+GGG - chr7_3:21922954-21922973 None:intergenic 25.0%
! TTCTATAAGGACTAAATACA+TGG - chr7_3:21922955-21922974 None:intergenic 25.0%
! AAATGAAACCAACACATTAA+TGG - chr7_3:21923101-21923120 None:intergenic 25.0%
!! CTCAATTCTATTCTTTTGAA+TGG + chr7_3:21923313-21923332 Msa1096850:intron 25.0%
! ACATGACAGAATTTAGTAAA+AGG - chr7_3:21923429-21923448 None:intergenic 25.0%
! AAAACCAAGACAAATCTTTA+AGG - chr7_3:21923573-21923592 None:intergenic 25.0%
! AGAAGATATACAAACATCAA+GGG - chr7_3:21924660-21924679 None:intergenic 25.0%
!!! AACATAATTGCTTGTTTTAG+TGG + chr7_3:21925744-21925763 Msa1096850:intron 25.0%
!!! AATAGGTTGAAAACATCTTT+TGG - chr7_3:21925885-21925904 None:intergenic 25.0%
!!! AAAGTCAAAGTATTTTCATG+AGG - chr7_3:21925950-21925969 None:intergenic 25.0%
! TTAAATTTACATCTGGACTA+AGG - chr7_3:21926097-21926116 None:intergenic 25.0%
!!! TTGAAAAATTTGTTTTGCAG+TGG + chr7_3:21926185-21926204 Msa1096850:intron 25.0%
! TAGAACTTTAGTACATCAAT+TGG + chr7_3:21926241-21926260 Msa1096850:CDS 25.0%
! AACACTAATCAAAATTCTTC+TGG - chr7_3:21926645-21926664 None:intergenic 25.0%
!! GAGAAGATTTGATTTAACAA+GGG - chr7_3:21926670-21926689 None:intergenic 25.0%
!! TGAGAAGATTTGATTTAACA+AGG - chr7_3:21926671-21926690 None:intergenic 25.0%
!!! CATATTTTAAGTAAAATGGC+AGG + chr7_3:21926819-21926838 Msa1096850:three_prime_UTR 25.0%
AACTGATGAAAATCAACATG+TGG - chr7_3:21922276-21922295 None:intergenic 30.0%
!! GTTGATTTTCATCAGTTTTC+AGG + chr7_3:21922279-21922298 Msa1096850:CDS 30.0%
! TTGGTGCATTTTCAGAAAAT+GGG + chr7_3:21922523-21922542 Msa1096850:CDS 30.0%
! AAGTGTCTGTAAATTTTGTC+TGG + chr7_3:21922665-21922684 Msa1096850:intron 30.0%
AGACTGTTTGGAAGAATTTA+TGG + chr7_3:21922732-21922751 Msa1096850:intron 30.0%
AACTTTATGGAAACGACTTA+TGG - chr7_3:21922776-21922795 None:intergenic 30.0%
! TGGGCTAATAACACTTATTT+TGG - chr7_3:21922935-21922954 None:intergenic 30.0%
! GTGTCTATTTTGCTTCTATA+AGG - chr7_3:21922968-21922987 None:intergenic 30.0%
TCCAATTTCCATTAATGTGT+TGG + chr7_3:21923090-21923109 Msa1096850:intron 30.0%
ACCAACACATTAATGGAAAT+TGG - chr7_3:21923094-21923113 None:intergenic 30.0%
CAATTCACATTTACACACAA+TGG - chr7_3:21923150-21923169 None:intergenic 30.0%
TAAGAAAATCCTACTCCAAT+TGG - chr7_3:21923202-21923221 None:intergenic 30.0%
! ACCTTCATAAGTTGAAGTAT+CGG - chr7_3:21923230-21923249 None:intergenic 30.0%
! ATGCAAAACTTTAGGAGAAA+GGG - chr7_3:21923452-21923471 None:intergenic 30.0%
! TATGCAAAACTTTAGGAGAA+AGG - chr7_3:21923453-21923472 None:intergenic 30.0%
AAAACAAGACTATTATGCAG+TGG - chr7_3:21923530-21923549 None:intergenic 30.0%
TGTACCTTAAAGATTTGTCT+TGG + chr7_3:21923566-21923585 Msa1096850:CDS 30.0%
ATCTAATCTTCTTGCAAAAC+TGG + chr7_3:21923629-21923648 Msa1096850:CDS 30.0%
TATGCTCCAATTCAACAAAA+AGG + chr7_3:21924046-21924065 Msa1096850:CDS 30.0%
! ACTTCTCCTTTTTGTTGAAT+TGG - chr7_3:21924055-21924074 None:intergenic 30.0%
! TTCTTATTCTTTCTAGTGCT+AGG + chr7_3:21924133-21924152 Msa1096850:intron 30.0%
! CATCACCTTTTTCTTTATGT+TGG + chr7_3:21924159-21924178 Msa1096850:intron 30.0%
ATAAACCAGAAAGAAAAAGC+TGG - chr7_3:21924187-21924206 None:intergenic 30.0%
TATGTGAGAGAATACTACAA+CGG + chr7_3:21924554-21924573 Msa1096850:CDS 30.0%
CTCATTACACTTGAACAAAT+GGG - chr7_3:21924590-21924609 None:intergenic 30.0%
!! TACTTGTTTCTGTACTAACT+TGG - chr7_3:21924613-21924632 None:intergenic 30.0%
CAGAAGATATACAAACATCA+AGG - chr7_3:21924661-21924680 None:intergenic 30.0%
!! CAATCAAGTTTAAAGTACTG+AGG + chr7_3:21924946-21924965 Msa1096850:intron 30.0%
AGACTGTCAATTATCTTAAC+AGG + chr7_3:21925048-21925067 Msa1096850:CDS 30.0%
CAGCAATAAGGTTTAAATTG+AGG - chr7_3:21925264-21925283 None:intergenic 30.0%
!! AAGTAACTTGTGACTTTTAC+TGG + chr7_3:21925783-21925802 Msa1096850:intron 30.0%
TTTCACAAACTATTCTTCTG+AGG - chr7_3:21925809-21925828 None:intergenic 30.0%
CATAAGCGCTTATCATATAA+GGG - chr7_3:21926009-21926028 None:intergenic 30.0%
ACATAAGCGCTTATCATATA+AGG - chr7_3:21926010-21926029 None:intergenic 30.0%
TATATGTAGACAACTAGACA+TGG - chr7_3:21926143-21926162 None:intergenic 30.0%
!!! ATAATCTCGCTCTTATTTTC+AGG + chr7_3:21926485-21926504 Msa1096850:intron 30.0%
TACTATCATTTGCAACAGTT+AGG + chr7_3:21926538-21926557 Msa1096850:CDS 30.0%
ACTATCATTTGCAACAGTTA+GGG + chr7_3:21926539-21926558 Msa1096850:CDS 30.0%
AATCAAAATTCTTCTGGTAG+AGG - chr7_3:21926639-21926658 None:intergenic 30.0%
! TTTTGTAAAGTTCTCAAGCA+AGG + chr7_3:21926708-21926727 Msa1096850:three_prime_UTR 30.0%
ACAACAAAGTAGTGAAGACA+TGG - chr7_3:21922163-21922182 None:intergenic 35.0%
ATTAGGGTGTGAAACTGAAA+AGG - chr7_3:21922229-21922248 None:intergenic 35.0%
TTTCCAAACCTCTTGTTCTT+TGG + chr7_3:21922373-21922392 Msa1096850:CDS 35.0%
! GTTGGTGCATTTTCAGAAAA+TGG + chr7_3:21922522-21922541 Msa1096850:CDS 35.0%
TTTCAGAAAATGGGCCATTT+AGG + chr7_3:21922532-21922551 Msa1096850:CDS 35.0%
AGTCGTTTCCATAAAGTTCT+CGG + chr7_3:21922778-21922797 Msa1096850:intron 35.0%
TGTGTAAATGTGAATTGCAG+AGG + chr7_3:21923153-21923172 Msa1096850:intron 35.0%
AGAGGCAAATATGTTGTACT+TGG + chr7_3:21923171-21923190 Msa1096850:intron 35.0%
TTGTACTTGGAATCACCAAT+TGG + chr7_3:21923184-21923203 Msa1096850:CDS 35.0%
ACCGATACTTCAACTTATGA+AGG + chr7_3:21923226-21923245 Msa1096850:CDS 35.0%
GGTGTAAATGACAAGATTAC+AGG + chr7_3:21923247-21923266 Msa1096850:CDS 35.0%
TTGTCTTTCTCTTTATAGCC+AGG + chr7_3:21923602-21923621 Msa1096850:CDS 35.0%
TGTCTTTCTCTTTATAGCCA+GGG + chr7_3:21923603-21923622 Msa1096850:CDS 35.0%
CAAGAAGATTAGATTATCCC+TGG - chr7_3:21923623-21923642 None:intergenic 35.0%
!! AGCTTCTGTTTCTGTATTCA+GGG - chr7_3:21923666-21923685 None:intergenic 35.0%
!! AAGCTTCTGTTTCTGTATTC+AGG - chr7_3:21923667-21923686 None:intergenic 35.0%
GGGACTAAATTGATGCAAAT+TGG - chr7_3:21923747-21923766 None:intergenic 35.0%
AATGTCGAAGACACGTTTAA+AGG + chr7_3:21923839-21923858 Msa1096850:intron 35.0%
AGGTCATTATGTTCCTCAAT+TGG + chr7_3:21924016-21924035 Msa1096850:intron 35.0%
TGGCACCAACATAAAGAAAA+AGG - chr7_3:21924167-21924186 None:intergenic 35.0%
ATTTAGATCGAAGTCATGTC+CGG + chr7_3:21924242-21924261 Msa1096850:intron 35.0%
ATATTGACATGTGTGACATG+CGG + chr7_3:21924294-21924313 Msa1096850:intron 35.0%
!! TCTGTTGCAAATTCTAGAAC+TGG - chr7_3:21924443-21924462 None:intergenic 35.0%
! ATTCAAGAGCTGAGTTCTTT+TGG + chr7_3:21924468-21924487 Msa1096850:CDS 35.0%
ACTTGAACAAATGGGAGAAA+CGG - chr7_3:21924582-21924601 None:intergenic 35.0%
GCTCATTACACTTGAACAAA+TGG - chr7_3:21924591-21924610 None:intergenic 35.0%
! ATAAACTCACCTGAGTATTG+AGG - chr7_3:21924703-21924722 None:intergenic 35.0%
TACTCAGGTGAGTTTATCAT+CGG + chr7_3:21924706-21924725 Msa1096850:intron 35.0%
CAAATAGCAAGTGACTGAAA+CGG + chr7_3:21925004-21925023 Msa1096850:intron 35.0%
ATCTGATTGGAGTACATAGA+TGG + chr7_3:21925099-21925118 Msa1096850:CDS 35.0%
AAAGAGAATTACCTGTTGCA+GGG - chr7_3:21925128-21925147 None:intergenic 35.0%
CAATTCAAATTCAAGAGGCA+AGG - chr7_3:21925289-21925308 None:intergenic 35.0%
CTTTATGTCAATCAGTGTGT+TGG + chr7_3:21925558-21925577 Msa1096850:intron 35.0%
!!! TAATTGCTTGTTTTAGTGGC+TGG + chr7_3:21925748-21925767 Msa1096850:intron 35.0%
ATTGGAGAGCTCATGAAAAT+AGG - chr7_3:21925902-21925921 None:intergenic 35.0%
GATTCAGTTATTCCATTGAC+TGG + chr7_3:21926215-21926234 Msa1096850:CDS 35.0%
AAAGTTCTACTTCCAGTCAA+TGG - chr7_3:21926230-21926249 None:intergenic 35.0%
CAATATCAACAAAGCACGAT+AGG - chr7_3:21926332-21926351 None:intergenic 35.0%
GGGCATTTAACTATATGTGT+CGG - chr7_3:21926382-21926401 None:intergenic 35.0%
CTATCATTTGCAACAGTTAG+GGG + chr7_3:21926540-21926559 Msa1096850:CDS 35.0%
CTGTTTAAGTCGTTCTTAGA+AGG + chr7_3:21926609-21926628 Msa1096850:CDS 35.0%
AAATGTAACATGACAGGGAA+AGG - chr7_3:21926764-21926783 None:intergenic 35.0%
AAATCAACATGTGGTTGACC+AGG - chr7_3:21922267-21922286 None:intergenic 40.0%
AGCTATCTCCGAGAACTTTA+TGG - chr7_3:21922789-21922808 None:intergenic 40.0%
TTGGAATCACCAATTGGAGT+AGG + chr7_3:21923190-21923209 Msa1096850:CDS 40.0%
! AACAGAAGCTTGTTCATCGT+AGG + chr7_3:21923676-21923695 Msa1096850:CDS 40.0%
TCGACATTGTTACCAATGCA+GGG - chr7_3:21923827-21923846 None:intergenic 40.0%
TTCGACATTGTTACCAATGC+AGG - chr7_3:21923828-21923847 None:intergenic 40.0%
CACACATGTCAATATCGTGT+TGG - chr7_3:21924289-21924308 None:intergenic 40.0%
AACCAAAGTCCTCAATACTC+AGG + chr7_3:21924691-21924710 Msa1096850:CDS 40.0%
GTTGATCGATCAAGATTGTG+CGG - chr7_3:21924880-21924899 None:intergenic 40.0%
CACCAATGTATCTGAATGCA+CGG + chr7_3:21924900-21924919 Msa1096850:intron 40.0%
ATCCGTGCATTCAGATACAT+TGG - chr7_3:21924905-21924924 None:intergenic 40.0%
GCTTTACATGCACATCTGAT+TGG + chr7_3:21925086-21925105 Msa1096850:CDS 40.0%
CAAAGAGAATTACCTGTTGC+AGG - chr7_3:21925129-21925148 None:intergenic 40.0%
GCAGGCAATTCAAATTCAAG+AGG - chr7_3:21925294-21925313 None:intergenic 40.0%
TTGGTTATCGTTGGACTGTT+CGG - chr7_3:21925439-21925458 None:intergenic 40.0%
CTTGGAGATACCAACAATCA+CGG + chr7_3:21925597-21925616 Msa1096850:CDS 40.0%
ATACCAACAATCACGGTTGT+CGG + chr7_3:21925604-21925623 Msa1096850:CDS 40.0%
ACATACCTGTAGACCAAAAC+TGG - chr7_3:21925652-21925671 None:intergenic 40.0%
GGACTAAGGACCAAGTTTAA+TGG - chr7_3:21926083-21926102 None:intergenic 40.0%
!!! TTTGTTTTGCAGTGGTGATC+AGG + chr7_3:21926193-21926212 Msa1096850:intron 40.0%
!!! TCTCGCTCTTATTTTCAGGT+TGG + chr7_3:21926489-21926508 Msa1096850:intron 40.0%
!!! CTTATTTTCAGGTTGGTGGT+TGG + chr7_3:21926496-21926515 Msa1096850:intron 40.0%
TGCAGCAACACACATTGCAA+TGG - chr7_3:21922187-21922206 None:intergenic 45.0%
GAGCCAAAGAACAAGAGGTT+TGG - chr7_3:21922379-21922398 None:intergenic 45.0%
CCATTGAGCCAAAGAACAAG+AGG - chr7_3:21922384-21922403 None:intergenic 45.0%
! CCTCTTGTTCTTTGGCTCAA+TGG + chr7_3:21922381-21922400 Msa1096850:CDS 45.0%
! CTTGTTCTTTGGCTCAATGG+AGG + chr7_3:21922384-21922403 Msa1096850:CDS 45.0%
!!! TCATGTTGTTTTGAAGGGCC+TGG + chr7_3:21922483-21922502 Msa1096850:intron 45.0%
ACACCAAGAGAAGAACAACC+AGG - chr7_3:21922504-21922523 None:intergenic 45.0%
! GGTTGTTCTTCTCTTGGTGT+TGG + chr7_3:21922504-21922523 Msa1096850:CDS 45.0%
AATGGGCCATTTAGGCCTAA+AGG + chr7_3:21922540-21922559 Msa1096850:CDS 45.0%
CTAACCAAAGCCTCTCCTTT+AGG - chr7_3:21922558-21922577 None:intergenic 45.0%
! CTAAAGGAGAGGCTTTGGTT+AGG + chr7_3:21922556-21922575 Msa1096850:CDS 45.0%
CATTGTTACCAATGCAGGGA+CGG - chr7_3:21923823-21923842 None:intergenic 45.0%
AGCATAAGCTCAGCCAATTG+AGG - chr7_3:21924032-21924051 None:intergenic 45.0%
!! TGGTGCCAGCTTTTTCTTTC+TGG + chr7_3:21924179-21924198 Msa1096850:intron 45.0%
CACTGACACATGTTTGACAC+CGG - chr7_3:21924264-21924283 None:intergenic 45.0%
! GAGTTTGCTTTCATGCAGCT+TGG + chr7_3:21924413-21924432 Msa1096850:intron 45.0%
! GCTGAGTTCTTTTGGTCTCA+TGG + chr7_3:21924476-21924495 Msa1096850:CDS 45.0%
!! CACCTGAGTATTGAGGACTT+TGG - chr7_3:21924696-21924715 None:intergenic 45.0%
GGTGAGTTTATCATCGGATC+TGG + chr7_3:21924712-21924731 Msa1096850:intron 45.0%
CGTGCATTCAGATACATTGG+TGG - chr7_3:21924902-21924921 None:intergenic 45.0%
!! CATGGAATTGTGTTGACTGC+AGG - chr7_3:21925312-21925331 None:intergenic 45.0%
CACATCAGTGGTCGTTAGAT+TGG + chr7_3:21925339-21925358 Msa1096850:intron 45.0%
TCCAACGATAACCAATGTGC+CGG + chr7_3:21925444-21925463 Msa1096850:intron 45.0%
GGATTATGAGTTGCGTGACT+TGG + chr7_3:21925579-21925598 Msa1096850:CDS 45.0%
!! GAGTTCCAGTTTTGGTCTAC+AGG + chr7_3:21925644-21925663 Msa1096850:CDS 45.0%
TGAATACCACTGTGCCTTAC+AGG + chr7_3:21926279-21926298 Msa1096850:CDS 45.0%
GAATACCACTGTGCCTTACA+GGG + chr7_3:21926280-21926299 Msa1096850:CDS 45.0%
!! TATATGTGTCGGTGTCGTGT+AGG - chr7_3:21926371-21926390 None:intergenic 45.0%
!!! CGCTCTTATTTTCAGGTTGG+TGG + chr7_3:21926492-21926511 Msa1096850:intron 45.0%
GGTGGTTGGACTCAAGTTTA+TGG + chr7_3:21926510-21926529 Msa1096850:CDS 45.0%
GATCTCTCAGGCTGTGAAAA+GGG - chr7_3:21926582-21926601 None:intergenic 45.0%
!!! TTAATCTTTTTATTATATTA+TGG + chr7_3:21923064-21923083 Msa1096850:intron 5.0%
GCCATTTAGGCCTAAAGGAG+AGG + chr7_3:21922545-21922564 Msa1096850:CDS 50.0%
GCCTCTCCTTTAGGCCTAAA+TGG - chr7_3:21922549-21922568 None:intergenic 50.0%
TAGGCCTAAAGGAGAGGCTT+TGG + chr7_3:21922551-21922570 Msa1096850:CDS 50.0%
TGGTTAGGAACCAGTTCAGC+TGG + chr7_3:21922571-21922590 Msa1096850:CDS 50.0%
AACCAGTTCAGCTGGAACAC+AGG + chr7_3:21922579-21922598 Msa1096850:CDS 50.0%
! GAAGCGCTTGTGAGACTGTT+TGG + chr7_3:21922720-21922739 Msa1096850:intron 50.0%
ATCGTAGGAGAGAGCTATGC+CGG + chr7_3:21923691-21923710 Msa1096850:CDS 50.0%
! AATGCAGGGACGGACTTGAT+TGG - chr7_3:21923813-21923832 None:intergenic 50.0%
AATCAAGTCCGTCCCTGCAT+TGG + chr7_3:21923812-21923831 Msa1096850:intron 50.0%
! CGGTGTCAAACATGTGTCAG+TGG + chr7_3:21924262-21924281 Msa1096850:intron 50.0%
ATAGATGGTCTCCCTGCAAC+AGG + chr7_3:21925114-21925133 Msa1096850:CDS 50.0%
AGAGGCAAGGCACAGCAATA+AGG - chr7_3:21925276-21925295 None:intergenic 50.0%
TTGCCGACAACCGTGATTGT+TGG - chr7_3:21925610-21925629 None:intergenic 50.0%
! CAAGGCAGGAGTTCCAGTTT+TGG + chr7_3:21925636-21925655 Msa1096850:CDS 50.0%
GCACGATAGGATTCACCTGT+TGG - chr7_3:21926319-21926338 None:intergenic 50.0%
CGATCTCTCAGGCTGTGAAA+AGG - chr7_3:21926583-21926602 None:intergenic 50.0%
AACAGCACAAGCGATCTCTC+AGG - chr7_3:21926594-21926613 None:intergenic 50.0%
GGGCCTGGTTGTTCTTCTCT+TGG + chr7_3:21922498-21922517 Msa1096850:intron 55.0%
CACCTGTGTTCCAGCTGAAC+TGG - chr7_3:21922584-21922603 None:intergenic 55.0%
TGCCTGACTGCATGCAGTCA+CGG - chr7_3:21924757-21924776 None:intergenic 55.0%
CTGCATGCAGTCAGGCACAT+TGG + chr7_3:21924760-21924779 Msa1096850:intron 55.0%
CATGCAGTCAGGCACATTGG+CGG + chr7_3:21924763-21924782 Msa1096850:intron 55.0%
GAGGTGTGCAACTGCGATTC+TGG - chr7_3:21925245-21925264 None:intergenic 55.0%
!! CCACTGATGTGCTGACTGCA+TGG - chr7_3:21925330-21925349 None:intergenic 55.0%
CCATGCAGTCAGCACATCAG+TGG + chr7_3:21925327-21925346 Msa1096850:intron 55.0%
! GCCGGCACATTGGTTATCGT+TGG - chr7_3:21925448-21925467 None:intergenic 55.0%
CATTCACACAGCCGGCACAT+TGG - chr7_3:21925458-21925477 None:intergenic 55.0%
! TGCCGGCTGTGTGAATGTGT+GGG + chr7_3:21925461-21925480 Msa1096850:intron 55.0%
CTCCCACACATTCACACAGC+CGG - chr7_3:21925466-21925485 None:intergenic 55.0%
GGTTGTCGGCAAGCTAGTCA+AGG + chr7_3:21925618-21925637 Msa1096850:CDS 55.0%
CCTGCAAACCACACCCTGTA+AGG - chr7_3:21926296-21926315 None:intergenic 55.0%
! CCTTACAGGGTGTGGTTTGC+AGG + chr7_3:21926293-21926312 Msa1096850:CDS 55.0%
!! GTCGGTGTCGTGTAGGACAT+TGG - chr7_3:21926364-21926383 None:intergenic 55.0%
TCCCGTGACTGCATGCAGTC+AGG + chr7_3:21924752-21924771 Msa1096850:intron 60.0%
GCCTGACTGCATGCAGTCAC+GGG - chr7_3:21924756-21924775 None:intergenic 60.0%
!! GTGCCGGCTGTGTGAATGTG+TGG + chr7_3:21925460-21925479 Msa1096850:intron 60.0%
GTCGGCAAGCTAGTCAAGGC+AGG + chr7_3:21925622-21925641 Msa1096850:CDS 60.0%
CCACACCCTGTAAGGCACAG+TGG - chr7_3:21926288-21926307 None:intergenic 60.0%
CCACTGTGCCTTACAGGGTG+TGG + chr7_3:21926285-21926304 Msa1096850:CDS 60.0%
! GGTGTGGTTTGCAGGCCAAC+AGG + chr7_3:21926301-21926320 Msa1096850:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 21922126 21926857 21922126 ID=Msa1096850;Name=Msa1096850
chr7_3 mRNA 21922126 21926857 21922126 ID=Msa1096850-mRNA-1;Parent=Msa1096850;Name=Msa1096850-mRNA-1;_AED=0.24;_eAED=0.24;_QI=36|0.88|0.8|1|1|1|10|201|482
chr7_3 exon 21922126 21922405 21922126 ID=Msa1096850-mRNA-1:exon:4784;Parent=Msa1096850-mRNA-1
chr7_3 exon 21922499 21922600 21922499 ID=Msa1096850-mRNA-1:exon:4785;Parent=Msa1096850-mRNA-1
chr7_3 exon 21923173 21923272 21923173 ID=Msa1096850-mRNA-1:exon:4786;Parent=Msa1096850-mRNA-1
chr7_3 exon 21923558 21923712 21923558 ID=Msa1096850-mRNA-1:exon:4787;Parent=Msa1096850-mRNA-1
chr7_3 exon 21924018 21924097 21924018 ID=Msa1096850-mRNA-1:exon:4788;Parent=Msa1096850-mRNA-1
chr7_3 exon 21924431 21924712 21924431 ID=Msa1096850-mRNA-1:exon:4789;Parent=Msa1096850-mRNA-1
chr7_3 exon 21925011 21925135 21925011 ID=Msa1096850-mRNA-1:exon:4790;Parent=Msa1096850-mRNA-1
chr7_3 exon 21925573 21925665 21925573 ID=Msa1096850-mRNA-1:exon:4791;Parent=Msa1096850-mRNA-1
chr7_3 exon 21926205 21926322 21926205 ID=Msa1096850-mRNA-1:exon:4792;Parent=Msa1096850-mRNA-1
chr7_3 exon 21926507 21926857 21926507 ID=Msa1096850-mRNA-1:exon:4793;Parent=Msa1096850-mRNA-1
chr7_3 five_prime_UTR 21922126 21922161 21922126 ID=Msa1096850-mRNA-1:five_prime_utr;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21922162 21922405 21922162 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21922499 21922600 21922499 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21923173 21923272 21923173 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21923558 21923712 21923558 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21924018 21924097 21924018 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21924431 21924712 21924431 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21925011 21925135 21925011 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21925573 21925665 21925573 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21926205 21926322 21926205 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 CDS 21926507 21926656 21926507 ID=Msa1096850-mRNA-1:cds;Parent=Msa1096850-mRNA-1
chr7_3 three_prime_UTR 21926657 21926857 21926657 ID=Msa1096850-mRNA-1:three_prime_utr;Parent=Msa1096850-mRNA-1
Gene Sequence

>Msa1096850

ATGTCTTCACTACTTTGTTGTTCCATTGCAATGTGTGTTGCTGCAATTGTACTTCAACAATGTTCCTTTTCAGTTTCACACCCTAATAAGATCACAAATTTACCTGGTCAACCACATGTTGATTTTCATCAGTTTTCAGGCTATGTAAATGTTGATGATCAAAACAAAAAAGCACTCTTTTTCTACTTTGTTGAAGCTCAGAATGATGATGTTTCCAAACCTCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCAGAAAATGGGCCATTTAGGCCTAAAGGAGAGGCTTTGGTTAGGAACCAGTTCAGCTGGAACACAGAGGCAAATATGTTGTACTTGGAATCACCAATTGGAGTAGGATTTTCTTATTCGACCGATACTTCAACTTATGAAGGTGTAAATGACAAGATTACAGGCAAACATGTCATGTACCTTAAAGATTTGTCTTGGTTTTCTGAAATTATTGTCTTTCTCTTTATAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTGAAGTTCCCTGAATACAGAAACAGAAGCTTGTTCATCGTAGGAGAGAGCTATGCCGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTTAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACAGACTTTAATTCAAGAGCTGAGTTCTTTTGGTCTCATGGATTGATCTCAGACTTAACATTTAAAATGTTCACTTCAGTTTGTAACTATTCAAGATATGTGAGAGAATACTACAACGGTGCCGTTTCTCCCATTTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCTGTGTTTTCACAAACCAAAGTCCTCAATACTCAGCAAGTGACTGAAACGGTTGATGTATGCGTTGAAGACGAGACTGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCTTTACATGCACATCTGATTGGAGTACATAGATGGTCTCCCTGCAACAGTGTGTTGGATTATGAGTTGCGTGACTTGGAGATACCAACAATCACGGTTGTCGGCAAGCTAGTCAAGGCAGGAGTTCCAGTTTTGGTCTACAGTGGTGATCAGGATTCAGTTATTCCATTGACTGGAAGTAGAACTTTAGTACATCAATTGGCAAAACAGCTGAGAATGAATACCACTGTGCCTTACAGGGTGTGGTTTGCAGGCCAACAGGTTGGTGGTTGGACTCAAGTTTATGGCAACATACTATCATTTGCAACAGTTAGGGGAGCATCACATGAAGTACCCTTTTCACAGCCTGAGAGATCGCTTGTGCTGTTTAAGTCGTTCTTAGAAGGAAGACCTCTACCAGAAGAATTTTGA
Protein sequence

>Msa1096850

MSSLLCCSIAMCVAAIVLQQCSFSVSHPNKITNLPGQPHVDFHQFSGYVNVDDQNKKALFFYFVEAQNDDVSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNTEANMLYLESPIGVGFSYSTDTSTYEGVNDKITGKHVMYLKDLSWFSEIIVFLFIARDNLIFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNTQQVTETVDVCVEDETVNYLNRKDVQSALHAHLIGVHRWSPCNSVLDYELRDLEIPTITVVGKLVKAGVPVLVYSGDQDSVIPLTGSRTLVHQLAKQLRMNTTVPYRVWFAGQQVGGWTQVYGNILSFATVRGASHEVPFSQPERSLVLFKSFLEGRPLPEEF*