AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1011530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1011530 MtrunA17_Chr7g0221551 97.391 460 12 0 1 460 1 460 0.0 936
Msa1011530 MtrunA17_Chr3g0131731 70.043 464 127 4 9 460 1 464 0.0 683
Msa1011530 MtrunA17_Chr8g0385871 68.330 461 135 3 8 460 8 465 0.0 672
Msa1011530 MtrunA17_Chr3g0094811 64.055 434 153 1 24 457 24 454 0.0 604
Msa1011530 MtrunA17_Chr2g0304931 59.404 436 168 5 25 457 33 462 0.0 531
Msa1011530 MtrunA17_Chr3g0126051 48.165 436 213 6 31 458 34 464 1.15e-146 427
Msa1011530 MtrunA17_Chr1g0204191 48.387 434 194 5 26 458 87 491 2.53e-144 422
Msa1011530 MtrunA17_Chr5g0431301 45.952 457 235 8 11 457 7 461 3.18e-141 413
Msa1011530 MtrunA17_Chr3g0126031 46.774 434 218 7 31 457 29 456 1.57e-140 411
Msa1011530 MtrunA17_Chr7g0219051 43.243 444 226 8 29 458 34 465 4.75e-121 361
Msa1011530 MtrunA17_Chr4g0020241 42.694 438 230 8 24 457 67 487 3.90e-117 352
Msa1011530 MtrunA17_Chr3g0090331 42.396 434 229 8 29 457 73 490 3.22e-116 350
Msa1011530 MtrunA17_Chr3g0118851 43.023 430 221 11 29 453 76 486 1.84e-113 343
Msa1011530 MtrunA17_Chr3g0118841 43.023 430 220 10 29 453 77 486 2.28e-112 340
Msa1011530 MtrunA17_Chr4g0038311 37.263 475 270 10 1 459 3 465 1.21e-110 334
Msa1011530 MtrunA17_Chr1g0199991 39.140 465 252 12 3 457 13 456 2.24e-110 333
Msa1011530 MtrunA17_Chr3g0118881 42.212 443 222 13 29 457 76 498 2.82e-110 335
Msa1011530 MtrunA17_Chr4g0047861 41.761 443 231 9 31 457 54 485 4.58e-109 331
Msa1011530 MtrunA17_Chr1g0199971 40.319 439 239 12 29 457 31 456 2.03e-104 318
Msa1011530 MtrunA17_Chr2g0281621 40.136 441 239 8 31 457 36 465 4.39e-103 315
Msa1011530 MtrunA17_Chr1g0165811 58.848 243 96 2 29 271 29 267 1.61e-101 304
Msa1011530 MtrunA17_Chr3g0118891 42.093 430 192 13 29 453 76 453 3.04e-101 310
Msa1011530 MtrunA17_Chr3g0118861 41.096 438 198 12 29 453 74 464 1.86e-100 308
Msa1011530 MtrunA17_Chr1g0153881 40.596 436 228 12 29 458 88 498 2.28e-100 309
Msa1011530 MtrunA17_Chr2g0309541 38.479 434 245 11 34 457 42 463 6.13e-100 307
Msa1011530 MtrunA17_Chr1g0153941 39.083 458 231 11 29 458 76 513 6.75e-100 308
Msa1011530 MtrunA17_Chr3g0118831 40.553 434 203 9 29 457 76 459 7.94e-100 306
Msa1011530 MtrunA17_Chr2g0309511 36.207 464 275 11 3 457 11 462 1.48e-99 306
Msa1011530 MtrunA17_Chr2g0309521 35.991 464 276 11 3 457 11 462 1.91e-99 306
Msa1011530 MtrunA17_Chr4g0068841 38.950 457 235 11 29 457 37 477 8.51e-98 302
Msa1011530 MtrunA17_Chr2g0318911 36.403 467 259 14 1 453 17 459 2.91e-93 290
Msa1011530 MtrunA17_Chr2g0281641 38.974 390 215 9 82 457 7 387 3.56e-85 266
Msa1011530 MtrunA17_Chr4g0068861 36.029 408 223 13 29 412 83 476 5.82e-78 250
Msa1011530 MtrunA17_Chr1g0165821 62.431 181 66 1 279 459 2 180 1.43e-73 229
Msa1011530 MtrunA17_Chr7g0229651 51.980 202 95 1 206 405 1 202 4.59e-68 216
Msa1011530 MtrunA17_Chr1g0153931 56.284 183 74 3 30 206 75 257 4.51e-65 210
Msa1011530 MtrunA17_Chr7g0234051 32.657 493 250 17 26 456 23 495 3.32e-64 215
Msa1011530 MtrunA17_Chr8g0338461 30.680 515 271 19 3 456 6 495 8.14e-61 206
Msa1011530 MtrunA17_Chr7g0249431 31.008 516 278 21 1 456 1 498 1.91e-57 197
Msa1011530 MtrunA17_Chr1g0171411 29.673 428 257 15 42 453 81 480 7.28e-53 185
Msa1011530 MtrunA17_Chr1g0199171 29.778 450 266 17 25 453 66 486 5.13e-51 180
Msa1011530 MtrunA17_Chr4g0009681 27.331 472 306 14 6 456 12 467 9.04e-50 176
Msa1011530 MtrunA17_Chr4g0009701 27.331 472 304 16 7 456 16 470 1.07e-49 176
Msa1011530 MtrunA17_Chr7g0234041 32.102 433 231 16 31 415 27 444 5.05e-49 174
Msa1011530 MtrunA17_Chr4g0009711 26.427 473 307 17 7 456 16 470 2.87e-48 172
Msa1011530 MtrunA17_Chr4g0009661 27.615 478 295 15 7 456 16 470 5.78e-48 171
Msa1011530 MtrunA17_Chr4g0009651 26.371 474 306 16 7 456 16 470 1.13e-47 170
Msa1011530 MtrunA17_Chr2g0285351 26.709 468 301 14 16 456 17 469 3.00e-47 169
Msa1011530 MtrunA17_Chr2g0285371 27.069 447 288 12 34 456 37 469 5.61e-47 168
Msa1011530 MtrunA17_Chr3g0133011 27.495 491 304 14 3 456 21 496 6.54e-47 169
Msa1011530 MtrunA17_Chr2g0327401 29.561 433 245 20 46 454 102 498 1.30e-46 168
Msa1011530 MtrunA17_Chr2g0285381 28.378 444 279 15 34 456 40 465 6.15e-45 163
Msa1011530 MtrunA17_Chr4g0028271 28.671 429 261 16 41 453 94 493 7.85e-45 163
Msa1011530 MtrunA17_Chr4g0009671 26.697 442 284 14 37 456 12 435 2.44e-44 160
Msa1011530 MtrunA17_Chr4g0028261 29.302 430 271 16 36 454 109 516 2.28e-43 159
Msa1011530 MtrunA17_Chr4g0009641 26.609 466 291 15 7 456 16 446 2.66e-43 158
Msa1011530 MtrunA17_Chr4g0028241 29.011 455 277 18 14 454 68 490 2.32e-42 156
Msa1011530 MtrunA17_Chr4g0028281 28.205 429 255 16 46 454 97 492 9.04e-42 155
Msa1011530 MtrunA17_Chr2g0327381 26.608 451 280 15 46 454 96 537 5.32e-41 154
Msa1011530 MtrunA17_Chr3g0093971 25.270 463 302 14 12 451 8 449 3.94e-40 149
Msa1011530 MtrunA17_Chr2g0327371 27.494 451 261 18 47 454 86 513 4.63e-39 147
Msa1011530 MtrunA17_Chr5g0447441 26.364 440 284 11 21 451 24 432 6.87e-34 132
Msa1011530 MtrunA17_Chr4g0009721 23.941 472 275 17 6 456 11 419 1.71e-33 130
Msa1011530 MtrunA17_Chr7g0229631 61.628 86 32 1 29 114 32 116 2.09e-30 115
Msa1011530 MtrunA17_Chr4g0044051 26.588 425 258 14 46 451 47 436 1.04e-28 117
Msa1011530 MtrunA17_Chr1g0153921 31.646 237 140 7 222 458 3 217 4.59e-28 110
Msa1011530 MtrunA17_Chr7g0229611 55.696 79 34 1 29 107 24 101 1.82e-23 94.4
Msa1011530 MtrunA17_Chr7g0229621 55.696 79 34 1 29 107 24 101 1.26e-22 92.4
Msa1011530 MtrunA17_Chr2g0279371 31.073 177 101 4 31 201 28 189 1.24e-21 92.4
Msa1011530 MtrunA17_Chr4g0027731 26.136 440 270 16 47 452 36 454 2.37e-19 90.1
Msa1011530 MtrunA17_Chr7g0264221 43.333 90 49 2 372 460 13 101 1.31e-17 78.6
Msa1011530 MtrunA17_Chr4g0006541 40.816 98 55 1 183 280 7 101 6.43e-17 76.3
Msa1011530 MtrunA17_Chr2g0320571 26.807 429 268 15 47 440 36 453 8.82e-14 73.2
Msa1011530 MtrunA17_Chr2g0281631 53.846 52 24 0 31 82 46 97 1.35e-13 67.4
Msa1011530 MtrunA17_Chr7g0229641 58.140 43 18 0 156 198 43 85 4.06e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1011530 AT1G28110.1 79.954 434 87 0 27 460 28 461 0.0 742
Msa1011530 AT1G28110.2 79.954 434 87 0 27 460 28 461 0.0 742
Msa1011530 AT2G33530.1 71.398 465 128 2 1 460 1 465 0.0 715
Msa1011530 AT1G43780.1 48.608 467 221 10 9 459 9 472 9.19e-150 435
Msa1011530 AT2G12480.3 45.824 467 233 10 5 459 1 459 1.03e-140 412
Msa1011530 AT5G42240.1 47.297 444 223 7 23 457 23 464 8.09e-140 410
Msa1011530 AT5G42230.1 44.956 456 240 7 13 459 9 462 1.39e-138 406
Msa1011530 AT5G42230.2 44.956 456 240 7 13 459 9 462 1.39e-138 406
Msa1011530 AT2G12480.4 44.731 465 217 10 5 459 1 435 1.59e-133 392
Msa1011530 AT2G12480.1 44.086 465 218 10 5 459 1 433 4.72e-131 386
Msa1011530 AT2G12480.2 43.991 466 218 11 5 459 1 434 2.83e-129 382
Msa1011530 AT2G24010.1 42.237 438 231 9 31 460 31 454 9.36e-117 350
Msa1011530 AT3G63470.1 43.155 431 228 8 31 458 82 498 7.47e-116 349
Msa1011530 AT3G02110.1 40.980 449 234 9 29 458 36 472 1.43e-115 348
Msa1011530 AT4G30610.1 39.955 448 240 10 29 460 31 465 5.42e-114 343
Msa1011530 AT2G24000.1 40.798 451 233 13 29 460 29 464 2.93e-112 339
Msa1011530 AT2G05850.1 40.732 437 235 9 31 458 64 485 1.28e-111 338
Msa1011530 AT2G24010.2 40.618 453 232 10 31 460 31 469 1.50e-111 337
Msa1011530 AT5G08260.1 38.086 491 249 11 4 459 8 478 1.31e-110 335
Msa1011530 AT3G07990.1 40.858 443 231 11 29 457 32 457 4.05e-109 331
Msa1011530 AT2G35780.1 38.789 446 250 10 21 457 20 451 2.74e-108 328
Msa1011530 AT4G30810.1 38.166 469 257 13 6 456 8 461 1.49e-106 325
Msa1011530 AT3G17180.1 40.564 461 240 9 19 457 27 475 3.28e-106 324
Msa1011530 AT2G24010.3 38.494 478 232 11 31 460 2 465 3.68e-106 323
Msa1011530 AT2G35770.1 38.612 461 261 10 4 457 13 458 3.75e-106 323
Msa1011530 AT1G61130.1 40.816 441 235 13 31 457 32 460 2.83e-104 318
Msa1011530 AT3G52010.1 41.230 439 229 13 31 458 65 485 3.00e-104 319
Msa1011530 AT1G11080.1 38.351 485 256 11 5 457 16 489 1.08e-103 318
Msa1011530 AT1G11080.2 38.351 485 256 11 5 457 16 489 1.30e-103 318
Msa1011530 AT4G15100.1 38.596 456 248 10 22 456 36 480 1.88e-102 315
Msa1011530 AT5G23210.1 36.266 466 252 10 23 457 44 495 3.28e-101 311
Msa1011530 AT3G52000.1 40.596 436 232 13 31 458 64 480 1.26e-98 305
Msa1011530 AT3G52020.1 39.080 435 241 11 31 457 80 498 3.12e-96 299
Msa1011530 AT3G17180.2 38.942 416 220 8 19 412 27 430 1.36e-88 277
Msa1011530 AT5G23210.3 35.154 421 229 9 23 412 44 451 1.53e-86 273
Msa1011530 AT5G23210.5 35.122 410 221 10 79 457 5 400 1.17e-79 253
Msa1011530 AT2G24010.4 38.736 364 191 8 31 371 2 356 1.44e-78 249
Msa1011530 AT5G23210.2 34.975 406 219 10 83 457 8 399 2.60e-78 249
Msa1011530 AT3G25420.1 33.663 505 263 17 9 456 5 494 6.23e-70 230
Msa1011530 AT4G12910.1 33.547 468 258 13 31 453 35 494 5.90e-66 220
Msa1011530 AT5G23210.4 33.518 361 196 9 83 412 8 355 7.83e-64 211
Msa1011530 AT1G33540.1 30.088 452 274 14 31 456 29 464 7.10e-58 198
Msa1011530 AT2G22990.1 29.128 436 268 13 34 456 26 433 2.13e-57 196
Msa1011530 AT1G73300.1 29.425 435 266 15 34 456 36 441 5.88e-57 195
Msa1011530 AT1G73300.2 29.425 435 266 15 34 456 36 441 5.88e-57 195
Msa1011530 AT1G73280.1 29.067 461 284 16 8 456 12 441 2.42e-56 193
Msa1011530 AT1G73290.1 30.505 436 258 15 34 456 35 438 2.30e-55 191
Msa1011530 AT1G33540.2 29.724 434 264 13 48 456 4 421 2.65e-55 190
Msa1011530 AT5G36180.1 28.995 438 270 15 31 456 33 441 2.81e-54 187
Msa1011530 AT3G56540.1 57.143 154 63 2 31 182 80 232 6.80e-54 181
Msa1011530 AT3G12230.1 29.399 449 254 15 31 456 27 435 9.14e-54 186
Msa1011530 AT3G12240.1 29.581 453 248 16 31 456 28 436 5.06e-53 184
Msa1011530 AT4G12910.2 32.401 429 237 13 31 414 35 455 2.30e-52 183
Msa1011530 AT3G10450.1 28.929 439 269 15 31 456 29 437 3.44e-52 182
Msa1011530 AT3G12203.3 28.281 442 261 12 34 456 12 416 6.30e-52 181
Msa1011530 AT5G09640.1 28.698 453 282 14 31 456 27 465 9.08e-52 181
Msa1011530 AT3G12203.1 28.315 445 263 12 31 456 30 437 1.04e-51 181
Msa1011530 AT2G22970.1 29.157 439 262 15 34 456 28 433 3.60e-51 179
Msa1011530 AT2G23000.1 28.315 445 268 14 31 456 25 437 4.98e-51 179
Msa1011530 AT2G23000.2 28.315 445 268 14 31 456 25 437 4.98e-51 179
Msa1011530 AT3G10450.2 28.979 421 257 14 48 456 4 394 6.08e-51 177
Msa1011530 AT3G12220.1 28.833 437 272 13 31 456 27 435 6.18e-51 179
Msa1011530 AT2G22990.5 28.211 436 263 14 34 456 26 424 6.57e-51 178
Msa1011530 AT2G22990.4 29.268 410 250 12 34 430 26 408 7.21e-51 178
Msa1011530 AT2G22990.3 29.095 409 254 11 34 431 26 409 7.37e-51 179
Msa1011530 AT2G22920.2 28.700 446 257 16 34 456 28 435 1.49e-50 177
Msa1011530 AT2G23010.1 26.681 461 301 12 8 456 2 437 3.00e-50 177
Msa1011530 AT1G73310.1 29.062 437 265 16 34 456 36 441 4.41e-50 176
Msa1011530 AT2G22980.1 26.835 436 272 14 34 456 29 430 1.30e-49 175
Msa1011530 AT3G12220.2 29.117 419 259 13 48 456 15 405 1.34e-49 174
Msa1011530 AT2G23010.2 26.464 461 302 12 8 456 2 437 2.17e-49 174
Msa1011530 AT1G73270.2 26.941 438 279 13 31 456 33 441 2.29e-49 174
Msa1011530 AT1G73270.1 26.941 438 279 13 31 456 33 441 3.09e-49 174
Msa1011530 AT3G45010.1 28.995 438 262 19 36 454 92 499 2.21e-48 173
Msa1011530 AT3G12203.2 27.885 416 245 11 59 456 1 379 6.30e-48 169
Msa1011530 AT2G24000.2 33.557 298 167 11 179 460 119 401 2.12e-47 168
Msa1011530 AT2G24000.2 52.222 90 40 2 29 115 29 118 3.34e-21 95.9
Msa1011530 AT5G22980.1 28.638 426 266 16 41 454 95 494 5.85e-46 167
Msa1011530 AT2G22970.4 28.986 414 246 14 34 431 28 409 1.61e-44 161
Msa1011530 AT3G10450.4 28.261 414 255 14 31 431 29 413 1.96e-44 160
Msa1011530 AT2G22970.3 29.056 413 245 14 34 430 28 408 4.54e-44 160
Msa1011530 AT3G10410.1 27.955 440 272 16 28 452 84 493 6.80e-44 161
Msa1011530 AT2G22980.2 26.764 411 255 13 34 431 29 406 1.26e-43 158
Msa1011530 AT2G22980.4 26.492 419 262 13 34 439 29 414 1.31e-43 159
Msa1011530 AT1G73290.3 29.873 395 233 14 34 415 35 398 2.93e-43 157
Msa1011530 AT3G10450.3 28.283 396 243 13 48 431 4 370 3.15e-43 156
Msa1011530 AT1G73310.2 28.250 400 243 15 34 419 36 405 7.61e-40 149
Msa1011530 AT2G22920.1 28.395 405 230 15 34 415 28 395 9.01e-40 148
Msa1011530 AT1G73280.4 27.809 356 225 12 105 456 12 339 2.24e-38 142
Msa1011530 AT1G73290.2 35.000 220 131 5 34 243 35 252 9.09e-38 140
Msa1011530 AT2G22990.6 27.405 343 221 9 117 456 2 319 2.58e-37 139
Msa1011530 AT1G73280.2 29.429 350 211 12 8 345 12 337 4.53e-37 140
Msa1011530 AT5G36180.5 27.809 356 225 12 105 456 12 339 8.96e-37 138
Msa1011530 AT5G36180.3 27.809 356 225 12 105 456 12 339 8.96e-37 138
Msa1011530 AT2G22990.2 27.114 343 222 9 117 456 2 319 2.05e-36 137
Msa1011530 AT1G73280.3 27.778 342 215 12 119 456 1 314 2.26e-35 134
Msa1011530 AT3G12220.3 29.121 364 226 12 31 379 27 373 2.67e-34 132
Msa1011530 AT2G22920.4 34.247 219 132 5 34 242 28 244 3.51e-33 128
Msa1011530 AT2G22970.2 34.978 223 124 7 34 242 28 243 1.54e-32 126
Msa1011530 AT2G22980.3 28.213 319 192 11 34 340 29 322 1.56e-31 124
Msa1011530 AT5G36180.2 27.190 331 210 11 105 431 12 315 8.45e-30 119
Msa1011530 AT1G15000.1 26.841 421 267 13 46 456 37 426 5.79e-29 119
Msa1011530 AT5G36180.4 26.752 314 199 11 105 414 12 298 5.70e-24 102
Msa1011530 AT1G73310.3 26.791 321 200 12 105 419 12 303 6.94e-24 102
Msa1011530 AT2G22980.5 23.750 320 207 10 117 431 2 289 3.43e-23 99.8
Msa1011530 AT5G22960.1 33.529 170 90 5 36 202 25 174 3.30e-22 94.4
Msa1011530 AT2G27920.1 25.328 458 301 14 11 440 1 445 7.13e-21 95.5
Msa1011530 AT2G22920.3 25.188 266 158 10 200 456 23 256 5.77e-18 84.0

Find 95 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAATTTGTGATCTTATT+AGG 0.075907 7_1:+15900492 None:intergenic
GAGAAGTTGTTTAATTTAAA+AGG 0.202110 7_1:-15898585 Msa1011530:CDS
GGTGGTTGGACTCAAGTTTA+TGG 0.219463 7_1:-15896135 Msa1011530:CDS
TTTCCAAACCTCTTGTTCTT+TGG 0.225038 7_1:-15900362 Msa1011530:CDS
ATCTAATCTTCTTGCAAAAC+TGG 0.232198 7_1:-15899108 Msa1011530:CDS
TTTCAGAAAATGGGCCATTT+AGG 0.242646 7_1:-15900203 Msa1011530:CDS
GCCTCTCCTTTAGGCCTAAA+TGG 0.253449 7_1:+15900189 None:intergenic
CCATACAGGGTGTGGTTTGC+GGG 0.257051 7_1:-15896359 Msa1011530:CDS
AAGCTTCTGTTTCTGTATTC+AGG 0.258582 7_1:+15899073 None:intergenic
CCTCTTGTTCTTTGGCTCAA+TGG 0.289869 7_1:-15900354 Msa1011530:CDS
ATTCAAGAGCTGAGTTCTTT+TGG 0.300704 7_1:-15898185 Msa1011530:CDS
CTAACCAAAGCCTCTCCTTT+AGG 0.326445 7_1:+15900180 None:intergenic
GTAAATTTGTGATCTTATTA+GGG 0.331087 7_1:+15900493 None:intergenic
GGTGTGGTTTGCGGGGCAAC+AGG 0.333280 7_1:-15896351 Msa1011530:intron
GATCTCTCAGGCTGTGAAAA+TGG 0.335940 7_1:+15896066 None:intergenic
TATGCTCCAATTCAACAAAA+AGG 0.337276 7_1:-15898607 Msa1011530:CDS
AGACTGTCAATTATCTTAAC+AGG 0.354537 7_1:-15897605 Msa1011530:CDS
GGGCCTGGTTGTTCTTCTCT+TGG 0.358083 7_1:-15900237 Msa1011530:CDS
GCTCATTACACTTGAACAAA+TGG 0.365760 7_1:+15898065 None:intergenic
CTATCATTTGCAACAGTTAG+AGG 0.370897 7_1:-15896105 Msa1011530:CDS
CTGTTTAAGTCCTTCTTAGA+AGG 0.373675 7_1:-15896036 Msa1011530:CDS
TCTGTTGCAAATTCTAGAAC+TGG 0.381458 7_1:+15898213 None:intergenic
GGTGTAAATGACAAGATTAC+AGG 0.386172 7_1:-15899492 Msa1011530:intron
CCCGCAAACCACACCCTGTA+TGG 0.391675 7_1:+15896359 None:intergenic
TAGGCCTAAAGGAGAGGCTT+TGG 0.395103 7_1:-15900184 Msa1011530:CDS
CAAGGCAGGAGTTCCAGTTT+TGG 0.395452 7_1:-15897016 Msa1011530:CDS
GCTTTACATGCACATCTGAT+TGG 0.395553 7_1:-15897567 Msa1011530:CDS
CACCTGTGTTCCAGCTGAAC+TGG 0.397389 7_1:+15900154 None:intergenic
AACACTAATCAAAATTCTTC+TGG 0.409071 7_1:+15896003 None:intergenic
TAAGAAAATCCTACTCCAAT+TGG 0.412031 7_1:+15899540 None:intergenic
AGCTTCTGTTTCTGTATTCA+GGG 0.412704 7_1:+15899074 None:intergenic
GCCATACAGGGTGTGGTTTG+CGG 0.416249 7_1:-15896360 Msa1011530:CDS
TAGAACTTTAGTACATCAAT+TGG 0.417903 7_1:-15896411 Msa1011530:CDS
AGGTCATTATGTTCCTCAAT+TGG 0.418352 7_1:-15898637 Msa1011530:CDS
ACATACCTGTAGACCAAAAC+TGG 0.425053 7_1:+15897003 None:intergenic
GAGCCAAAGAACAAGAGGTT+TGG 0.427927 7_1:+15900359 None:intergenic
GGTTGTTCTTCTCTTGGTGT+TGG 0.436843 7_1:-15900231 Msa1011530:CDS
TACTTGTTTCTGTACTAACT+TGG 0.447886 7_1:+15898043 None:intergenic
TGAATACCACTGTGCCATAC+AGG 0.449455 7_1:-15896373 Msa1011530:CDS
TGGTTAGGAACCAGTTCAGC+TGG 0.449673 7_1:-15900164 Msa1011530:CDS
CTCATTACACTTGAACAAAT+GGG 0.461870 7_1:+15898066 None:intergenic
CTTTATGTCAATCAGTGTGT+TGG 0.463466 7_1:-15897094 Msa1011530:intron
TTGCCGACAACCGTGATTGT+TGG 0.469285 7_1:+15897045 None:intergenic
CAAAGAGAATTACCTGCTGC+AGG 0.474248 7_1:+15897527 None:intergenic
GATTCAGTTATTCCATTGAC+TGG 0.474345 7_1:-15896437 Msa1011530:CDS
CACCTGAGTATTGAGGACTT+TGG 0.483689 7_1:+15897960 None:intergenic
AAAGTTCTACTTCCAGTCAA+TGG 0.487618 7_1:+15896425 None:intergenic
CAAGAAGATTAGATTATCCC+TGG 0.488331 7_1:+15899117 None:intergenic
AGAGGCAAATATGTTGTACT+TGG 0.493990 7_1:-15899568 Msa1011530:CDS
CTAAAGGAGAGGCTTTGGTT+AGG 0.494226 7_1:-15900179 Msa1011530:CDS
ACGGATACTTCAACTTATGA+AGG 0.498127 7_1:-15899513 Msa1011530:CDS
AGTACTTGCTGCAACTGTAA+AGG 0.501917 7_1:-15900610 Msa1011530:five_prime_UTR
ACTTGAACAAATGGGAGAAA+CGG 0.502123 7_1:+15898074 None:intergenic
AATCAAAATTCTTCTGGTAG+AGG 0.510276 7_1:+15896009 None:intergenic
CAGAAGATATACAAACATCA+AGG 0.511989 7_1:+15897995 None:intergenic
ATCTGATTGGAGTACATAGA+TGG 0.512377 7_1:-15897554 Msa1011530:CDS
TATCATTTGCAACAGTTAGA+GGG 0.519461 7_1:-15896104 Msa1011530:CDS
ATAGATGGTCTCCCTGCAGC+AGG 0.526560 7_1:-15897539 Msa1011530:intron
TTGTACTTGGAATCACCAAT+TGG 0.528164 7_1:-15899555 Msa1011530:CDS
GGATTATGAGTTGCGTGACT+TGG 0.530856 7_1:-15897073 Msa1011530:CDS
AACCAGTTCAGCTGGAACAC+AGG 0.532001 7_1:-15900156 Msa1011530:intron
ATCGTAGGAGAGAGCTATGC+CGG 0.540126 7_1:-15899046 Msa1011530:intron
AATGGGCCATTTAGGCCTAA+AGG 0.545330 7_1:-15900195 Msa1011530:CDS
ATACCAACAATCACGGTTGT+CGG 0.552329 7_1:-15897048 Msa1011530:CDS
AACAGCACAAGTGATCTCTC+AGG 0.554549 7_1:+15896054 None:intergenic
TAGAGGTCTTCCTTCTAAGA+AGG 0.555538 7_1:+15896026 None:intergenic
TGAGAAGATTTGATTTAACA+AGG 0.559426 7_1:+15895977 None:intergenic
ATAAACTCACCTGAGTATTG+AGG 0.563913 7_1:+15897953 None:intergenic
CTTGTTCTTTGGCTCAATGG+AGG 0.565339 7_1:-15900351 Msa1011530:intron
TTGGAATCACCAATTGGAGT+AGG 0.570704 7_1:-15899549 Msa1011530:CDS
AAATCAACATGTGGTTGACC+AGG 0.571157 7_1:+15900471 None:intergenic
AGCATAAGCTCAGCCAATTG+AGG 0.572712 7_1:+15898624 None:intergenic
GCCATTTAGGCCTAAAGGAG+AGG 0.574984 7_1:-15900190 Msa1011530:CDS
CATACAGGGTGTGGTTTGCG+GGG 0.582054 7_1:-15896358 Msa1011530:CDS
CAAATAGCAAGTGACTGAAA+CGG 0.583402 7_1:-15897649 Msa1011530:intron
CCATTGAGCCAAAGAACAAG+AGG 0.585597 7_1:+15900354 None:intergenic
AAATGTAACATAACAGGGAA+AGG 0.587222 7_1:+15895884 None:intergenic
TATGTGAGAGAATACTATAA+CGG 0.590701 7_1:-15898099 Msa1011530:CDS
GAGAAGATTTGATTTAACAA+GGG 0.595692 7_1:+15895978 None:intergenic
TGCAGCAACACACATTGCAA+TGG 0.598224 7_1:+15900551 None:intergenic
CCACTGTGCCATACAGGGTG+TGG 0.599660 7_1:-15896367 Msa1011530:CDS
ATCATTTGCAACAGTTAGAG+GGG 0.601394 7_1:-15896103 Msa1011530:CDS
ACACCAAGAGAAGAACAACC+AGG 0.602850 7_1:+15900234 None:intergenic
AATAAGATCACAAATTTACC+TGG 0.604906 7_1:-15900489 Msa1011530:CDS
GAATACCACTGTGCCATACA+GGG 0.605985 7_1:-15896372 Msa1011530:CDS
ATTAGGGTGTGAAACTGCAA+AGG 0.615335 7_1:+15900509 None:intergenic
AGAAGATATACAAACATCAA+GGG 0.621855 7_1:+15897996 None:intergenic
AACCAAAGTCCTCAATACTC+AGG 0.621880 7_1:-15897962 Msa1011530:intron
AAAGAGAATTACCTGCTGCA+GGG 0.624612 7_1:+15897528 None:intergenic
GGTTGTCGGCAAGCTAGTCA+AGG 0.630864 7_1:-15897034 Msa1011530:CDS
ACAACAAAGTAGAGAAGACA+TGG 0.637953 7_1:+15900575 None:intergenic
CTTGGAGATACCAACAATCA+CGG 0.653663 7_1:-15897055 Msa1011530:CDS
AACTGATGAAAATCAACATG+TGG 0.670035 7_1:+15900462 None:intergenic
AACAGAAGCTTGTTCATCGT+AGG 0.672452 7_1:-15899061 Msa1011530:CDS
CCACACCCTGTATGGCACAG+TGG 0.730052 7_1:+15896367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAT+TGG - chr7_1:15896698-15896717 Msa1011530:intron 0.0%
!!! GTAAAAAAGTTTTTAAAATA+GGG + chr7_1:15896382-15896401 None:intergenic 10.0%
!! AATAAGAAAAGAATAATAAT+TGG + chr7_1:15897887-15897906 None:intergenic 10.0%
!!! TTTATTTTCATATACAATAT+TGG + chr7_1:15899687-15899706 None:intergenic 10.0%
!! TTGAATAAAAAATAGAATAA+GGG + chr7_1:15900169-15900188 None:intergenic 10.0%
!! TTTGAATAAAAAATAGAATA+AGG + chr7_1:15900170-15900189 None:intergenic 10.0%
!!! TTTTTTATTCAAATCATTAA+CGG - chr7_1:15900177-15900196 Msa1011530:CDS 10.0%
!!! CGTAAAAAAGTTTTTAAAAT+AGG + chr7_1:15896383-15896402 None:intergenic 15.0%
!!! TTAAAAACTTTTTTACGAAA+AGG - chr7_1:15896386-15896405 Msa1011530:CDS 15.0%
!! ATAAAAATGTTTGAATCAAA+TGG + chr7_1:15897026-15897045 None:intergenic 15.0%
!!! TATTTACATTTTACAATTCT+AGG - chr7_1:15897643-15897662 Msa1011530:CDS 15.0%
!!! TATTACTTTGTTTATTTCTT+TGG - chr7_1:15897701-15897720 Msa1011530:intron 15.0%
!! TAAAATACAAACTTCAAATT+TGG + chr7_1:15898579-15898598 None:intergenic 15.0%
!! CAATTAATTATGATTTATGA+AGG + chr7_1:15899935-15899954 None:intergenic 15.0%
!! TAAAAAAATGTAACATAACA+GGG + chr7_1:15900543-15900562 None:intergenic 15.0%
!! ATAAAAAAATGTAACATAAC+AGG + chr7_1:15900544-15900563 None:intergenic 15.0%
!! GTAAATTTGTGATCTTATTA+GGG + chr7_1:15895929-15895948 None:intergenic 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG - chr7_1:15896583-15896602 Msa1011530:intron 20.0%
!!! TTATTCTAAGATCAAATAGA+AGG + chr7_1:15896971-15896990 None:intergenic 20.0%
!! ATTATGTTATGCAAAACTTT+AGG + chr7_1:15897140-15897159 None:intergenic 20.0%
!!! ATGATAAGTTATTGTTTTAC+CGG + chr7_1:15897395-15897414 None:intergenic 20.0%
!!! GTGTTTTGTAATTTATCATT+AGG - chr7_1:15897762-15897781 Msa1011530:intron 20.0%
!!! GAGAAGTTGTTTAATTTAAA+AGG - chr7_1:15897834-15897853 Msa1011530:intron 20.0%
!! ATTGTAAAAACTGAAATTGA+AGG + chr7_1:15898696-15898715 None:intergenic 20.0%
!!! TTTAAAATCATGTTTCTTGT+AGG + chr7_1:15898927-15898946 None:intergenic 20.0%
!!! AGAAACATGATTTTAAATTG+CGG - chr7_1:15898930-15898949 Msa1011530:intron 20.0%
!!! AACATGTTTTATGATAAGAA+AGG + chr7_1:15899258-15899277 None:intergenic 20.0%
!!! TCTTACTTATTACATGTTTT+TGG - chr7_1:15899451-15899470 Msa1011530:intron 20.0%
!!! TTTAGAATAATCTTGTGAAT+AGG - chr7_1:15899604-15899623 Msa1011530:intron 20.0%
!!! GTTTAATGGATTACTTAATT+AGG + chr7_1:15899836-15899855 None:intergenic 20.0%
!! ATTAAGTAATCCATTAAACT+TGG - chr7_1:15899837-15899856 Msa1011530:intron 20.0%
!! TGAAAAGTTAAATTTACATC+TGG + chr7_1:15899871-15899890 None:intergenic 20.0%
!!! CATTTTTTAAGTAAAATGAC+AGG - chr7_1:15900593-15900612 Msa1011530:exon 20.0%
! GGTAAATTTGTGATCTTATT+AGG + chr7_1:15895930-15895949 None:intergenic 25.0%
! AATAAGATCACAAATTTACC+TGG - chr7_1:15895930-15895949 Msa1011530:three_prime_UTR 25.0%
!!! TTTGTTTCATGTTGTTTTGA+AGG - chr7_1:15896161-15896180 Msa1011530:intron 25.0%
!!! TTGTTTCATGTTGTTTTGAA+GGG - chr7_1:15896162-15896181 Msa1011530:intron 25.0%
! ATACAAAATTAGTGTAGACA+AGG + chr7_1:15896310-15896329 None:intergenic 25.0%
!! AAATGTCTGTAAATTTTGTC+TGG - chr7_1:15896349-15896368 Msa1011530:intron 25.0%
! TCTATAAGGACTAAATACTT+GGG + chr7_1:15896628-15896647 None:intergenic 25.0%
! TTCTATAAGGACTAAATACT+TGG + chr7_1:15896629-15896648 None:intergenic 25.0%
! TCATTGAACAAAGTTTATGT+AGG - chr7_1:15896664-15896683 Msa1011530:intron 25.0%
! AAATGAAACCAACACATTAA+TGG + chr7_1:15896781-15896800 None:intergenic 25.0%
!! CTCAATTCTATTCTTTTGAA+TGG - chr7_1:15896993-15897012 Msa1011530:intron 25.0%
! ACATGACAGAATTTAGTAAA+AGG + chr7_1:15897109-15897128 None:intergenic 25.0%
! AAAACCAAGACAAATCTTTA+AGG + chr7_1:15897253-15897272 None:intergenic 25.0%
! TTATCATTGAATAAACACAC+CGG - chr7_1:15897408-15897427 Msa1011530:intron 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr7_1:15897456-15897475 None:intergenic 25.0%
! TATGTGAGAGAATACTATAA+CGG - chr7_1:15898320-15898339 Msa1011530:intron 25.0%
! AGAAGATATACAAACATCAA+GGG + chr7_1:15898426-15898445 None:intergenic 25.0%
! ACAAATTCTACATTGAAATC+TGG - chr7_1:15899175-15899194 Msa1011530:intron 25.0%
!!! AACATAATTGCTTGTTTTAG+TGG - chr7_1:15899511-15899530 Msa1011530:CDS 25.0%
!!! AATAGGTTGAAAACATCTTT+TGG + chr7_1:15899652-15899671 None:intergenic 25.0%
!!! AAAGTCAAAGTATTTTCATG+AGG + chr7_1:15899717-15899736 None:intergenic 25.0%
! TTAAATTTACATCTGGACTA+GGG + chr7_1:15899864-15899883 None:intergenic 25.0%
!!! TTGAAAAATTTGTTTTGCAG+TGG - chr7_1:15899952-15899971 Msa1011530:intron 25.0%
! TAGAACTTTAGTACATCAAT+TGG - chr7_1:15900008-15900027 Msa1011530:intron 25.0%
!!! ATAATCTCGCTTTTATTTTC+AGG - chr7_1:15900259-15900278 Msa1011530:intron 25.0%
! AACACTAATCAAAATTCTTC+TGG + chr7_1:15900419-15900438 None:intergenic 25.0%
!! GAGAAGATTTGATTTAACAA+GGG + chr7_1:15900444-15900463 None:intergenic 25.0%
!! TGAGAAGATTTGATTTAACA+AGG + chr7_1:15900445-15900464 None:intergenic 25.0%
AACTGATGAAAATCAACATG+TGG + chr7_1:15895960-15895979 None:intergenic 30.0%
!! GTTGATTTTCATCAGTTTTC+AGG - chr7_1:15895963-15895982 Msa1011530:three_prime_UTR 30.0%
! TTGGTGCATTTTCAGAAAAT+GGG - chr7_1:15896207-15896226 Msa1011530:intron 30.0%
TAGATAAACTAAACCATGCA+TGG + chr7_1:15896412-15896431 None:intergenic 30.0%
AGACTGTTTGGAAGAATTTA+TGG - chr7_1:15896457-15896476 Msa1011530:intron 30.0%
AACTTTATGGAAACGACTTA+TGG + chr7_1:15896501-15896520 None:intergenic 30.0%
! TGGGCTAATAACACTTATTT+TGG + chr7_1:15896609-15896628 None:intergenic 30.0%
! GTGTCTATTTTGCTTCTATA+AGG + chr7_1:15896642-15896661 None:intergenic 30.0%
TCCAATTTCCATTAATGTGT+TGG - chr7_1:15896770-15896789 Msa1011530:intron 30.0%
ACCAACACATTAATGGAAAT+TGG + chr7_1:15896774-15896793 None:intergenic 30.0%
CAATTCACATTTACACACAA+TGG + chr7_1:15896830-15896849 None:intergenic 30.0%
TAAGAAAATCCTACTCCAAT+TGG + chr7_1:15896882-15896901 None:intergenic 30.0%
! AGTAGGATTTTCTTATTCGA+CGG - chr7_1:15896887-15896906 Msa1011530:intron 30.0%
! ATGCAAAACTTTAGGAGAAA+GGG + chr7_1:15897132-15897151 None:intergenic 30.0%
! TATGCAAAACTTTAGGAGAA+AGG + chr7_1:15897133-15897152 None:intergenic 30.0%
AAAACAACACTATTATGCAG+TGG + chr7_1:15897210-15897229 None:intergenic 30.0%
TGTACCTTAAAGATTTGTCT+TGG - chr7_1:15897246-15897265 Msa1011530:intron 30.0%
ATCTAATCTTCTTGCAAAAC+TGG - chr7_1:15897311-15897330 Msa1011530:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr7_1:15897487-15897506 Msa1011530:intron 30.0%
TATGCTCCAATTCAACAAAA+AGG - chr7_1:15897812-15897831 Msa1011530:intron 30.0%
! ACTTCTCCTTTTTGTTGAAT+TGG + chr7_1:15897821-15897840 None:intergenic 30.0%
! CATCACCTTTTTCTTTATGT+TGG - chr7_1:15897925-15897944 Msa1011530:intron 30.0%
ATAAACCAGAAAGAAAAAGC+TGG + chr7_1:15897953-15897972 None:intergenic 30.0%
CTCATTACACTTGAACAAAT+GGG + chr7_1:15898356-15898375 None:intergenic 30.0%
!! TACTTGTTTCTGTACTAACT+TGG + chr7_1:15898379-15898398 None:intergenic 30.0%
CAGAAGATATACAAACATCA+AGG + chr7_1:15898427-15898446 None:intergenic 30.0%
!! CAATCAAGTTTAAAGTACTG+AGG - chr7_1:15898712-15898731 Msa1011530:intron 30.0%
AGACTGTCAATTATCTTAAC+AGG - chr7_1:15898814-15898833 Msa1011530:intron 30.0%
CAGCAATAAGGTTTAAATTG+AGG + chr7_1:15899030-15899049 None:intergenic 30.0%
!! AAGTAACTTGTGACTTTTAC+TGG - chr7_1:15899550-15899569 Msa1011530:CDS 30.0%
TTTCACAAACTATTCTTCTG+AGG + chr7_1:15899576-15899595 None:intergenic 30.0%
CATAAGCGCTTATCATATAA+GGG + chr7_1:15899776-15899795 None:intergenic 30.0%
ACATAAGCGCTTATCATATA+AGG + chr7_1:15899777-15899796 None:intergenic 30.0%
GTTAAATTTACATCTGGACT+AGG + chr7_1:15899865-15899884 None:intergenic 30.0%
TATATGTAGACAACTAGACA+TGG + chr7_1:15899910-15899929 None:intergenic 30.0%
CAATTTCAACAAAACACAAC+AGG + chr7_1:15900099-15900118 None:intergenic 30.0%
TATCATTTGCAACAGTTAGA+GGG - chr7_1:15900315-15900334 Msa1011530:intron 30.0%
AATCAAAATTCTTCTGGTAG+AGG + chr7_1:15900413-15900432 None:intergenic 30.0%
! TTTTGTAAAGTTCTCAAGCA+AGG - chr7_1:15900482-15900501 Msa1011530:CDS 30.0%
AAATGTAACATAACAGGGAA+AGG + chr7_1:15900538-15900557 None:intergenic 30.0%
ACAACAAAGTAGAGAAGACA+TGG + chr7_1:15895847-15895866 None:intergenic 35.0%
TTTCCAAACCTCTTGTTCTT+TGG - chr7_1:15896057-15896076 Msa1011530:CDS 35.0%
! GTTGGTGCATTTTCAGAAAA+TGG - chr7_1:15896206-15896225 Msa1011530:intron 35.0%
TTTCAGAAAATGGGCCATTT+AGG - chr7_1:15896216-15896235 Msa1011530:intron 35.0%
AGTCGTTTCCATAAAGTTCT+CGG - chr7_1:15896503-15896522 Msa1011530:intron 35.0%
TGTGTAAATGTGAATTGCAG+AGG - chr7_1:15896833-15896852 Msa1011530:intron 35.0%
AGAGGCAAATATGTTGTACT+TGG - chr7_1:15896851-15896870 Msa1011530:intron 35.0%
TTGTACTTGGAATCACCAAT+TGG - chr7_1:15896864-15896883 Msa1011530:intron 35.0%
ACGGATACTTCAACTTATGA+AGG - chr7_1:15896906-15896925 Msa1011530:intron 35.0%
GGTGTAAATGACAAGATTAC+AGG - chr7_1:15896927-15896946 Msa1011530:intron 35.0%
TTGTCTTTCTCTTTATAGCC+AGG - chr7_1:15897284-15897303 Msa1011530:intron 35.0%
TGTCTTTCTCTTTATAGCCA+GGG - chr7_1:15897285-15897304 Msa1011530:intron 35.0%
CAAGAAGATTAGATTATCCC+TGG + chr7_1:15897305-15897324 None:intergenic 35.0%
!! AGCTTCTGTTTCTGTATTCA+GGG + chr7_1:15897348-15897367 None:intergenic 35.0%
!! AAGCTTCTGTTTCTGTATTC+AGG + chr7_1:15897349-15897368 None:intergenic 35.0%
AATGTCGAAGACACGTTTAA+AGG - chr7_1:15897605-15897624 Msa1011530:CDS 35.0%
AGGTCATTATGTTCCTCAAT+TGG - chr7_1:15897782-15897801 Msa1011530:intron 35.0%
TTCTTATTCTTGCTAGTGCT+AGG - chr7_1:15897899-15897918 Msa1011530:intron 35.0%
TGGCACCAACATAAAGAAAA+AGG + chr7_1:15897933-15897952 None:intergenic 35.0%
ATTTAGATCGAAGTCATGTC+CGG - chr7_1:15898008-15898027 Msa1011530:CDS 35.0%
ATATTGACATGTGTGACATG+CGG - chr7_1:15898060-15898079 Msa1011530:CDS 35.0%
!! TCTGTTGCAAATTCTAGAAC+TGG + chr7_1:15898209-15898228 None:intergenic 35.0%
! ATTCAAGAGCTGAGTTCTTT+TGG - chr7_1:15898234-15898253 Msa1011530:intron 35.0%
ACTTGAACAAATGGGAGAAA+CGG + chr7_1:15898348-15898367 None:intergenic 35.0%
GCTCATTACACTTGAACAAA+TGG + chr7_1:15898357-15898376 None:intergenic 35.0%
! ATAAACTCACCTGAGTATTG+AGG + chr7_1:15898469-15898488 None:intergenic 35.0%
TACTCAGGTGAGTTTATCAT+CGG - chr7_1:15898472-15898491 Msa1011530:intron 35.0%
CAAATAGCAAGTGACTGAAA+CGG - chr7_1:15898770-15898789 Msa1011530:intron 35.0%
ATCTGATTGGAGTACATAGA+TGG - chr7_1:15898865-15898884 Msa1011530:intron 35.0%
CAATTCAAATTCAAGAGGCA+AGG + chr7_1:15899055-15899074 None:intergenic 35.0%
CTTTATGTCAATCAGTGTGT+TGG - chr7_1:15899325-15899344 Msa1011530:intron 35.0%
!!! TAATTGCTTGTTTTAGTGGC+TGG - chr7_1:15899515-15899534 Msa1011530:CDS 35.0%
ATTGGAGAGCTCATGAAAAT+AGG + chr7_1:15899669-15899688 None:intergenic 35.0%
GATTCAGTTATTCCATTGAC+TGG - chr7_1:15899982-15900001 Msa1011530:intron 35.0%
AAAGTTCTACTTCCAGTCAA+TGG + chr7_1:15899997-15900016 None:intergenic 35.0%
GGGCATTTAACTATATGTGT+CGG + chr7_1:15900149-15900168 None:intergenic 35.0%
!!! TCTCGCTTTTATTTTCAGGT+TGG - chr7_1:15900263-15900282 Msa1011530:intron 35.0%
!!! TTTATTTTCAGGTTGGTGGT+TGG - chr7_1:15900270-15900289 Msa1011530:intron 35.0%
CTATCATTTGCAACAGTTAG+AGG - chr7_1:15900314-15900333 Msa1011530:intron 35.0%
ATCATTTGCAACAGTTAGAG+GGG - chr7_1:15900316-15900335 Msa1011530:intron 35.0%
CTGTTTAAGTCCTTCTTAGA+AGG - chr7_1:15900383-15900402 Msa1011530:CDS 35.0%
ATTAGGGTGTGAAACTGCAA+AGG + chr7_1:15895913-15895932 None:intergenic 40.0%
AAATCAACATGTGGTTGACC+AGG + chr7_1:15895951-15895970 None:intergenic 40.0%
! TTTTACGAAAAGGCCATGCA+TGG - chr7_1:15896396-15896415 Msa1011530:CDS 40.0%
AGCTATCTCCGAGAACTTTA+TGG + chr7_1:15896514-15896533 None:intergenic 40.0%
TTGGAATCACCAATTGGAGT+AGG - chr7_1:15896870-15896889 Msa1011530:intron 40.0%
! AACAGAAGCTTGTTCATCGT+AGG - chr7_1:15897358-15897377 Msa1011530:intron 40.0%
TCGACATTGTTACCAATGCA+GGG + chr7_1:15897593-15897612 None:intergenic 40.0%
TTCGACATTGTTACCAATGC+AGG + chr7_1:15897594-15897613 None:intergenic 40.0%
CACACATGTCAATATCGTGT+TGG + chr7_1:15898055-15898074 None:intergenic 40.0%
AACCAAAGTCCTCAATACTC+AGG - chr7_1:15898457-15898476 Msa1011530:intron 40.0%
GTTGATCGATCAAGATTGTG+CGG + chr7_1:15898646-15898665 None:intergenic 40.0%
CACCAATGTATCTGAATGCA+CGG - chr7_1:15898666-15898685 Msa1011530:intron 40.0%
ATCCGTGCATTCAGATACAT+TGG + chr7_1:15898671-15898690 None:intergenic 40.0%
GCTTTACATGCACATCTGAT+TGG - chr7_1:15898852-15898871 Msa1011530:intron 40.0%
AAAGAGAATTACCTGCTGCA+GGG + chr7_1:15898894-15898913 None:intergenic 40.0%
GCAGGCAATTCAAATTCAAG+AGG + chr7_1:15899060-15899079 None:intergenic 40.0%
TTGGTTATCGTTGGACTGTT+CGG + chr7_1:15899206-15899225 None:intergenic 40.0%
CTTGGAGATACCAACAATCA+CGG - chr7_1:15899364-15899383 Msa1011530:intron 40.0%
ATACCAACAATCACGGTTGT+CGG - chr7_1:15899371-15899390 Msa1011530:intron 40.0%
ACATACCTGTAGACCAAAAC+TGG + chr7_1:15899419-15899438 None:intergenic 40.0%
!!! TTTGTTTTGCAGTGGTGATC+AGG - chr7_1:15899960-15899979 Msa1011530:intron 40.0%
!!! CGCTTTTATTTTCAGGTTGG+TGG - chr7_1:15900266-15900285 Msa1011530:intron 40.0%
! TAGAGGTCTTCCTTCTAAGA+AGG + chr7_1:15900396-15900415 None:intergenic 40.0%
TGCAGCAACACACATTGCAA+TGG + chr7_1:15895871-15895890 None:intergenic 45.0%
GAGCCAAAGAACAAGAGGTT+TGG + chr7_1:15896063-15896082 None:intergenic 45.0%
CCATTGAGCCAAAGAACAAG+AGG + chr7_1:15896068-15896087 None:intergenic 45.0%
! CCTCTTGTTCTTTGGCTCAA+TGG - chr7_1:15896065-15896084 Msa1011530:CDS 45.0%
! CTTGTTCTTTGGCTCAATGG+AGG - chr7_1:15896068-15896087 Msa1011530:CDS 45.0%
!!! TCATGTTGTTTTGAAGGGCC+TGG - chr7_1:15896167-15896186 Msa1011530:intron 45.0%
ACACCAAGAGAAGAACAACC+AGG + chr7_1:15896188-15896207 None:intergenic 45.0%
! GGTTGTTCTTCTCTTGGTGT+TGG - chr7_1:15896188-15896207 Msa1011530:intron 45.0%
AATGGGCCATTTAGGCCTAA+AGG - chr7_1:15896224-15896243 Msa1011530:intron 45.0%
CTAACCAAAGCCTCTCCTTT+AGG + chr7_1:15896242-15896261 None:intergenic 45.0%
! CTAAAGGAGAGGCTTTGGTT+AGG - chr7_1:15896240-15896259 Msa1011530:intron 45.0%
! GAAGCACTTGTGAGACTGTT+TGG - chr7_1:15896445-15896464 Msa1011530:CDS 45.0%
!! TACAAGTGTCGGTGTCGTAT+CGG - chr7_1:15897498-15897517 Msa1011530:intron 45.0%
CATTGTTACCAATGCAGGGA+CGG + chr7_1:15897589-15897608 None:intergenic 45.0%
AGCATAAGCTCAGCCAATTG+AGG + chr7_1:15897798-15897817 None:intergenic 45.0%
!! TGGTGCCAGCTTTTTCTTTC+TGG - chr7_1:15897945-15897964 Msa1011530:intron 45.0%
CACTGACACATGTTTGACAC+CGG + chr7_1:15898030-15898049 None:intergenic 45.0%
! GAGTTTGCTTTCATGCAGCT+TGG - chr7_1:15898179-15898198 Msa1011530:CDS 45.0%
! GCTGAGTTCTTTTGGTCTCA+TGG - chr7_1:15898242-15898261 Msa1011530:intron 45.0%
!! CACCTGAGTATTGAGGACTT+TGG + chr7_1:15898462-15898481 None:intergenic 45.0%
GGTGAGTTTATCATCGGATC+TGG - chr7_1:15898478-15898497 Msa1011530:intron 45.0%
CGTGCATTCAGATACATTGG+TGG + chr7_1:15898668-15898687 None:intergenic 45.0%
CAAAGAGAATTACCTGCTGC+AGG + chr7_1:15898895-15898914 None:intergenic 45.0%
!! CATGGAATTGTGTTGACTGC+AGG + chr7_1:15899078-15899097 None:intergenic 45.0%
TCCAACGATAACCAATGTGC+CGG - chr7_1:15899211-15899230 Msa1011530:intron 45.0%
GGATTATGAGTTGCGTGACT+TGG - chr7_1:15899346-15899365 Msa1011530:intron 45.0%
!! GAGTTCCAGTTTTGGTCTAC+AGG - chr7_1:15899411-15899430 Msa1011530:intron 45.0%
GGACTAGGGACCAAGTTTAA+TGG + chr7_1:15899850-15899869 None:intergenic 45.0%
TGAATACCACTGTGCCATAC+AGG - chr7_1:15900046-15900065 Msa1011530:intron 45.0%
GAATACCACTGTGCCATACA+GGG - chr7_1:15900047-15900066 Msa1011530:intron 45.0%
!! TATATGTGTCGGTGTCGTGT+AGG + chr7_1:15900138-15900157 None:intergenic 45.0%
GGTGGTTGGACTCAAGTTTA+TGG - chr7_1:15900284-15900303 Msa1011530:intron 45.0%
GATCTCTCAGGCTGTGAAAA+TGG + chr7_1:15900356-15900375 None:intergenic 45.0%
AACAGCACAAGTGATCTCTC+AGG + chr7_1:15900368-15900387 None:intergenic 45.0%
!!! TTAATCTTTTTATTATATTA+TGG - chr7_1:15896744-15896763 Msa1011530:intron 5.0%
GCCATTTAGGCCTAAAGGAG+AGG - chr7_1:15896229-15896248 Msa1011530:intron 50.0%
GCCTCTCCTTTAGGCCTAAA+TGG + chr7_1:15896233-15896252 None:intergenic 50.0%
TAGGCCTAAAGGAGAGGCTT+TGG - chr7_1:15896235-15896254 Msa1011530:intron 50.0%
TGGTTAGGAACCAGTTCAGC+TGG - chr7_1:15896255-15896274 Msa1011530:intron 50.0%
AACCAGTTCAGCTGGAACAC+AGG - chr7_1:15896263-15896282 Msa1011530:intron 50.0%
ATCGTAGGAGAGAGCTATGC+CGG - chr7_1:15897373-15897392 Msa1011530:intron 50.0%
TAAACACACCGGACACGACA+CGG - chr7_1:15897419-15897438 Msa1011530:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr7_1:15897565-15897584 None:intergenic 50.0%
! CGGTGTCAAACATGTGTCAG+TGG - chr7_1:15898028-15898047 Msa1011530:CDS 50.0%
AGAGGCAAGGCACAGCAATA+AGG + chr7_1:15899042-15899061 None:intergenic 50.0%
TTGCCGACAACCGTGATTGT+TGG + chr7_1:15899377-15899396 None:intergenic 50.0%
! CAAGGCAGGAGTTCCAGTTT+TGG - chr7_1:15899403-15899422 Msa1011530:intron 50.0%
GGGCCTGGTTGTTCTTCTCT+TGG - chr7_1:15896182-15896201 Msa1011530:intron 55.0%
CACCTGTGTTCCAGCTGAAC+TGG + chr7_1:15896268-15896287 None:intergenic 55.0%
!! TGTCGGTGTCGTATCGGTGT+CGG - chr7_1:15897504-15897523 Msa1011530:intron 55.0%
CTTCATAGCCGTCCCTGCAT+TGG - chr7_1:15897578-15897597 Msa1011530:CDS 55.0%
TGCCTGACTGCATGCAGTCA+CGG + chr7_1:15898523-15898542 None:intergenic 55.0%
CTGCATGCAGTCAGGCACAT+TGG - chr7_1:15898526-15898545 Msa1011530:intron 55.0%
CATGCAGTCAGGCACATTGG+CGG - chr7_1:15898529-15898548 Msa1011530:intron 55.0%
ATAGATGGTCTCCCTGCAGC+AGG - chr7_1:15898880-15898899 Msa1011530:intron 55.0%
GAGGTGTGCAACTGCGATTC+TGG + chr7_1:15899011-15899030 None:intergenic 55.0%
!! CCACTGATGTGCTGACTGCA+TGG + chr7_1:15899096-15899115 None:intergenic 55.0%
CCATGCAGTCAGCACATCAG+TGG - chr7_1:15899093-15899112 Msa1011530:CDS 55.0%
! GCCGGCACATTGGTTATCGT+TGG + chr7_1:15899215-15899234 None:intergenic 55.0%
CATTCACACAGCCGGCACAT+TGG + chr7_1:15899225-15899244 None:intergenic 55.0%
! TGCCGGCTGTGTGAATGTGT+GGG - chr7_1:15899228-15899247 Msa1011530:intron 55.0%
CTCCCACACATTCACACAGC+CGG + chr7_1:15899233-15899252 None:intergenic 55.0%
GGTTGTCGGCAAGCTAGTCA+AGG - chr7_1:15899385-15899404 Msa1011530:intron 55.0%
GCCATACAGGGTGTGGTTTG+CGG - chr7_1:15900059-15900078 Msa1011530:intron 55.0%
! CCATACAGGGTGTGGTTTGC+GGG - chr7_1:15900060-15900079 Msa1011530:intron 55.0%
! CATACAGGGTGTGGTTTGCG+GGG - chr7_1:15900061-15900080 Msa1011530:intron 55.0%
!! GTCGGTGTCGTGTAGGACAT+TGG + chr7_1:15900131-15900150 None:intergenic 55.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr7_1:15897430-15897449 None:intergenic 60.0%
ACACGACACGTGTCCGACAC+CGG - chr7_1:15897527-15897546 Msa1011530:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG + chr7_1:15897543-15897562 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr7_1:15897549-15897568 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr7_1:15897559-15897578 None:intergenic 60.0%
GCAGGGACGGCTATGAAGCA+CGG + chr7_1:15897576-15897595 None:intergenic 60.0%
TCCCGTGACTGCATGCAGTC+AGG - chr7_1:15898518-15898537 Msa1011530:intron 60.0%
GCCTGACTGCATGCAGTCAC+GGG + chr7_1:15898522-15898541 None:intergenic 60.0%
!! GTGCCGGCTGTGTGAATGTG+TGG - chr7_1:15899227-15899246 Msa1011530:intron 60.0%
GTCGGCAAGCTAGTCAAGGC+AGG - chr7_1:15899389-15899408 Msa1011530:intron 60.0%
CCACACCCTGTATGGCACAG+TGG + chr7_1:15900055-15900074 None:intergenic 60.0%
CCACTGTGCCATACAGGGTG+TGG - chr7_1:15900052-15900071 Msa1011530:intron 60.0%
CCCGCAAACCACACCCTGTA+TGG + chr7_1:15900063-15900082 None:intergenic 60.0%
CACGACACGTGTCCGACACC+GGG - chr7_1:15897528-15897547 Msa1011530:intron 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr7_1:15897545-15897564 Msa1011530:CDS 65.0%
! GGTGTGGTTTGCGGGGCAAC+AGG - chr7_1:15900068-15900087 Msa1011530:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 15895810 15900631 15895810 ID=Msa1011530;Name=Msa1011530
chr7_1 mRNA 15895810 15900631 15895810 ID=Msa1011530-mRNA-1;Parent=Msa1011530;Name=Msa1011530-mRNA-1;_AED=0.16;_eAED=0.16;_QI=36|1|1|1|1|1|10|201|460
chr7_1 exon 15895810 15896160 15895810 ID=Msa1011530-mRNA-1:exon:4124;Parent=Msa1011530-mRNA-1
chr7_1 exon 15896352 15896469 15896352 ID=Msa1011530-mRNA-1:exon:4123;Parent=Msa1011530-mRNA-1
chr7_1 exon 15897009 15897101 15897009 ID=Msa1011530-mRNA-1:exon:4122;Parent=Msa1011530-mRNA-1
chr7_1 exon 15897540 15897664 15897540 ID=Msa1011530-mRNA-1:exon:4121;Parent=Msa1011530-mRNA-1
chr7_1 exon 15897963 15898244 15897963 ID=Msa1011530-mRNA-1:exon:4120;Parent=Msa1011530-mRNA-1
chr7_1 exon 15898578 15898657 15898578 ID=Msa1011530-mRNA-1:exon:4119;Parent=Msa1011530-mRNA-1
chr7_1 exon 15899047 15899139 15899047 ID=Msa1011530-mRNA-1:exon:4118;Parent=Msa1011530-mRNA-1
chr7_1 exon 15899493 15899588 15899493 ID=Msa1011530-mRNA-1:exon:4117;Parent=Msa1011530-mRNA-1
chr7_1 exon 15900157 15900258 15900157 ID=Msa1011530-mRNA-1:exon:4116;Parent=Msa1011530-mRNA-1
chr7_1 exon 15900352 15900631 15900352 ID=Msa1011530-mRNA-1:exon:4115;Parent=Msa1011530-mRNA-1
chr7_1 five_prime_UTR 15900596 15900631 15900596 ID=Msa1011530-mRNA-1:five_prime_utr;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15900352 15900595 15900352 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15900157 15900258 15900157 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15899493 15899588 15899493 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15899047 15899139 15899047 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15898578 15898657 15898578 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15897963 15898244 15897963 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15897540 15897664 15897540 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15897009 15897101 15897009 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15896352 15896469 15896352 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 CDS 15896011 15896160 15896011 ID=Msa1011530-mRNA-1:cds;Parent=Msa1011530-mRNA-1
chr7_1 three_prime_UTR 15895810 15896010 15895810 ID=Msa1011530-mRNA-1:three_prime_utr;Parent=Msa1011530-mRNA-1
Gene Sequence

>Msa1011530

ATGTCTTCTCTACTTTGTTGTTCCATTGCAATGTGTGTTGCTGCAATTGTACTTCAACAATGTTCCTTTGCAGTTTCACACCCTAATAAGATCACAAATTTACCTGGTCAACCACATGTTGATTTTCATCAGTTTTCAGGCTATGTAAATGTTGATGATCAAAACAAAAAAGCACTGTTTTTCTACTTTGTTGAAGCTCAGAATGATGATGTTTCCAAACCTCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCAGAAAATGGGCCATTTAGGCCTAAAGGAGAGGCTTTGGTTAGGAACCAGTTCAGCTGGAACACAGAGGCAAATATGTTGTACTTGGAATCACCAATTGGAGTAGGATTTTCTTATTCGACGGATACTTCAACTTATGAAGGTGTAAATGACAAGATTACAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTGAAGTTCCCTGAATACAGAAACAGAAGCTTGTTCATCGTAGGAGAGAGCTATGCCGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTTAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACAGACTTTAATTCAAGAGCTGAGTTCTTTTGGTCTCATGGATTGATCTCAGACTTAACATTTAAAATGTTCACTTCAGTTTGTAACTATTCAAGATATGTGAGAGAATACTATAACGGTGCCGTTTCTCCCATTTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCTGTGTTTTCACAAACCAAAGTCCTCAATACTCAGCAAGTGACTGAAACGGTTGATGTATGCGTTGAAGACGAGACTGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCTTTACATGCACATCTGATTGGAGTACATAGATGGTCTCCCTGCAGCAGTGTGTTGGATTATGAGTTGCGTGACTTGGAGATACCAACAATCACGGTTGTCGGCAAGCTAGTCAAGGCAGGAGTTCCAGTTTTGGTCTACAGTGGTGATCAGGATTCAGTTATTCCATTGACTGGAAGTAGAACTTTAGTACATCAATTGGCAAAACAGCTGAGAATGAATACCACTGTGCCATACAGGGTGTGGTTTGCGGGGCAACAGGTTGGTGGTTGGACTCAAGTTTATGGTAACATACTATCATTTGCAACAGTTAGAGGGGCATCACATGAAGTACCATTTTCACAGCCTGAGAGATCACTTGTGCTGTTTAAGTCCTTCTTAGAAGGAAGACCTCTACCAGAAGAATTTTGA
Protein sequence

>Msa1011530

MSSLLCCSIAMCVAAIVLQQCSFAVSHPNKITNLPGQPHVDFHQFSGYVNVDDQNKKALFFYFVEAQNDDVSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNTEANMLYLESPIGVGFSYSTDTSTYEGVNDKITARDNLIFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNTQQVTETVDVCVEDETVNYLNRKDVQSALHAHLIGVHRWSPCSSVLDYELRDLEIPTITVVGKLVKAGVPVLVYSGDQDSVIPLTGSRTLVHQLAKQLRMNTTVPYRVWFAGQQVGGWTQVYGNILSFATVRGASHEVPFSQPERSLVLFKSFLEGRPLPEEF*