AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017950 MtrunA17_Chr1g0152161 97.783 451 5 2 1 451 1 446 0.0 926
Msa0017950 MtrunA17_Chr3g0135161 64.119 471 122 17 1 451 1 444 0.0 532
Msa0017950 MtrunA17_Chr4g0054351 52.532 474 175 12 1 451 1 447 1.27e-132 397
Msa0017950 MtrunA17_Chr8g0343851 44.009 459 153 15 18 451 3 382 1.80e-102 317
Msa0017950 MtrunA17_Chr5g0400871 76.163 172 34 2 283 451 219 386 2.33e-87 277
Msa0017950 MtrunA17_Chr4g0072291 64.078 206 59 3 261 451 91 296 2.87e-86 273
Msa0017950 MtrunA17_Chr2g0328971 65.641 195 42 3 258 450 129 300 5.25e-82 262
Msa0017950 MtrunA17_Chr5g0412151 59.459 222 82 4 237 450 139 360 5.71e-82 262
Msa0017950 MtrunA17_Chr4g0032631 65.990 197 46 3 258 451 122 300 6.03e-82 263
Msa0017950 MtrunA17_Chr7g0249621 82.313 147 23 1 308 451 250 396 3.18e-80 262
Msa0017950 MtrunA17_Chr4g0073521 62.987 154 55 1 300 451 28 181 6.22e-62 205
Msa0017950 MtrunA17_Chr7g0216601 62.179 156 55 2 299 451 48 202 1.02e-59 201
Msa0017950 MtrunA17_Chr8g0355191 56.571 175 67 3 284 450 15 188 1.70e-57 195
Msa0017950 MtrunA17_Chr6g0452911 51.832 191 73 2 280 451 15 205 2.50e-54 186
Msa0017950 MtrunA17_Chr8g0355181 64.444 135 48 0 316 450 55 189 8.73e-53 182
Msa0017950 MtrunA17_Chr8g0362541 55.000 180 67 2 285 450 23 202 1.50e-52 182
Msa0017950 MtrunA17_Chr4g0002011 66.187 139 44 1 316 451 35 173 2.75e-52 179
Msa0017950 MtrunA17_Chr8g0367311 75.258 97 24 0 354 450 22 118 5.76e-48 165
Msa0017950 MtrunA17_Chr2g0305821 57.931 145 51 2 284 427 22 157 4.03e-43 149
Msa0017950 MtrunA17_Chr7g0257361 63.077 130 40 2 315 441 55 179 1.05e-39 147
Msa0017950 MtrunA17_Chr7g0263581 45.752 153 75 3 298 450 117 261 1.64e-28 117
Msa0017950 MtrunA17_Chr4g0053181 50.382 131 57 3 320 450 176 298 3.16e-28 117
Msa0017950 MtrunA17_Chr5g0401891 50.382 131 57 3 320 450 152 274 6.81e-28 116
Msa0017950 MtrunA17_Chr4g0030191 43.293 164 85 3 287 450 98 253 1.08e-27 115
Msa0017950 MtrunA17_Chr2g0325911 40.299 201 87 8 274 456 72 257 3.50e-26 110
Msa0017950 MtrunA17_Chr8g0367321 56.962 79 31 2 280 355 115 193 5.07e-21 90.9
Msa0017950 MtrunA17_Chr3g0126151 45.349 86 46 1 365 450 47 131 6.26e-19 83.2
Msa0017950 MtrunA17_Chr1g0170761 39.716 141 77 3 296 436 113 245 1.68e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017950 AT4G37750.1 49.580 476 137 21 12 450 7 416 1.48e-112 343
Msa0017950 AT1G72570.1 70.769 195 52 3 261 451 164 357 1.19e-90 282
Msa0017950 AT1G51190.1 68.844 199 54 4 258 451 129 324 2.45e-85 273
Msa0017950 AT5G57390.2 78.065 155 31 1 300 451 65 219 2.44e-84 266
Msa0017950 AT5G57390.1 78.065 155 31 1 300 451 183 337 1.91e-83 268
Msa0017950 AT3G20840.1 65.482 197 58 2 258 451 126 315 2.99e-82 265
Msa0017950 AT5G65510.3 46.580 307 123 7 187 453 4 309 1.28e-80 253
Msa0017950 AT5G17430.2 82.192 146 23 1 308 450 136 281 4.31e-80 258
Msa0017950 AT5G17430.1 82.192 146 23 1 308 450 198 343 8.01e-80 259
Msa0017950 AT5G65510.2 46.429 308 124 7 183 450 58 364 1.53e-78 253
Msa0017950 AT5G65510.1 46.429 308 124 7 183 450 58 364 1.53e-78 253
Msa0017950 AT5G65510.4 46.711 304 121 7 187 450 4 306 2.48e-78 251
Msa0017950 AT5G10510.2 71.519 158 45 0 293 450 203 360 6.59e-77 250
Msa0017950 AT5G10510.7 70.186 161 45 1 293 450 203 363 7.61e-75 245
Msa0017950 AT5G10510.5 70.186 161 45 1 293 450 203 363 7.61e-75 245
Msa0017950 AT5G10510.1 70.186 161 45 1 293 450 226 386 8.60e-75 245
Msa0017950 AT5G10510.6 70.186 161 45 1 293 450 241 401 1.29e-74 245
Msa0017950 AT5G10510.4 70.186 161 45 1 293 450 241 401 1.29e-74 245
Msa0017950 AT5G10510.3 61.878 181 46 1 293 450 241 421 1.50e-70 235
Msa0017950 AT3G54320.3 57.396 169 64 2 291 451 31 199 2.47e-56 193
Msa0017950 AT3G54320.1 57.396 169 64 2 291 451 31 199 2.73e-56 193
Msa0017950 AT1G79700.2 64.748 139 46 1 316 451 48 186 2.90e-50 174
Msa0017950 AT1G16060.1 52.910 189 69 4 270 451 17 192 1.90e-48 170
Msa0017950 AT1G79700.1 65.354 127 41 1 316 439 48 174 7.62e-45 159
Msa0017950 AT2G41710.1 61.364 132 43 2 313 441 63 189 2.19e-39 147
Msa0017950 AT2G41710.4 61.364 132 43 2 313 441 63 189 2.83e-39 148
Msa0017950 AT3G54320.4 66.327 98 33 0 354 451 36 133 2.09e-38 143
Msa0017950 AT3G54320.5 66.327 98 33 0 354 451 36 133 2.09e-38 143
Msa0017950 AT2G41710.2 59.124 137 43 3 313 441 63 194 6.02e-37 140
Msa0017950 AT2G41710.3 59.504 121 41 2 324 441 109 224 7.10e-33 130
Msa0017950 AT1G79700.4 63.265 98 36 0 354 451 7 104 1.84e-30 118
Msa0017950 AT1G79700.3 63.265 98 36 0 354 451 13 110 1.95e-30 118
Msa0017950 AT4G36920.1 44.910 167 83 4 284 450 96 253 1.95e-28 117
Msa0017950 AT4G36920.2 44.910 167 83 4 284 450 96 253 1.95e-28 117
Msa0017950 AT1G16060.3 58.654 104 43 0 348 451 19 122 1.01e-27 112
Msa0017950 AT2G28550.4 48.092 131 60 3 320 450 153 275 1.22e-27 113
Msa0017950 AT5G67180.3 40.107 187 94 4 264 450 50 218 1.88e-27 111
Msa0017950 AT5G67180.2 40.107 187 94 4 264 450 50 218 2.04e-27 111
Msa0017950 AT5G67180.4 40.107 187 94 4 264 450 50 218 2.43e-27 110
Msa0017950 AT5G67180.1 40.107 187 94 4 264 450 50 218 6.72e-27 111
Msa0017950 AT2G28550.3 48.092 131 60 3 320 450 153 275 2.17e-26 111
Msa0017950 AT2G28550.2 47.581 124 57 3 320 443 153 268 8.28e-25 103
Msa0017950 AT2G28550.6 47.581 124 57 3 320 443 153 268 8.28e-25 103
Msa0017950 AT2G28550.1 47.581 124 57 3 320 443 153 268 1.84e-23 102
Msa0017950 AT2G39250.2 42.202 109 56 2 321 429 109 210 3.61e-22 95.5
Msa0017950 AT2G39250.1 42.202 109 56 2 321 429 109 210 1.05e-21 96.3
Msa0017950 AT1G16060.2 63.793 58 21 0 394 451 1 58 8.16e-20 88.2
Msa0017950 AT1G16060.4 63.793 58 21 0 394 451 1 58 8.16e-20 88.2
Msa0017950 AT1G16060.6 63.793 58 21 0 394 451 1 58 8.16e-20 88.2
Msa0017950 AT1G16060.5 63.793 58 21 0 394 451 1 58 8.16e-20 88.2
Msa0017950 AT5G60120.6 46.032 126 60 3 317 442 157 274 1.95e-19 91.3
Msa0017950 AT5G60120.1 46.032 126 60 3 317 442 157 274 2.35e-19 90.9
Msa0017950 AT5G60120.4 46.032 126 60 3 317 442 157 274 2.40e-19 90.5
Msa0017950 AT5G60120.3 46.032 126 60 3 317 442 157 274 2.40e-19 90.5
Msa0017950 AT5G60120.5 46.032 126 60 3 317 442 157 274 2.40e-19 90.5
Msa0017950 AT5G60120.2 46.032 126 60 3 317 442 157 274 2.43e-19 90.9
Msa0017950 AT3G54320.2 65.517 58 20 0 394 451 1 58 3.48e-19 88.2
Msa0017950 AT3G54990.2 45.714 105 50 2 320 424 122 219 3.89e-18 84.3
Msa0017950 AT3G54990.1 45.714 105 50 2 320 424 122 219 1.32e-17 84.3
Msa0017950 AT2G28550.5 47.778 90 46 1 354 443 14 102 2.52e-15 76.6

Find 152 sgRNAs with CRISPR-Local

Find 760 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTCTTGCTTCTTAAAA+AGG 0.138631 1_1:+30008247 None:intergenic
TGTTCTTCTTCTTCCATTAA+TGG 0.183802 1_1:+30007420 None:intergenic
GTATGTTAGTGAAGGAATTT+TGG 0.188891 1_1:-29996920 Msa0017950:three_prime_UTR
TTTGACCCTGTTGGAGGTTT+TGG 0.217540 1_1:+29997204 None:intergenic
AACATTGTTGTTACACTCTT+TGG 0.220426 1_1:+29997539 None:intergenic
GTAGATATGAAGCACATTTA+TGG 0.231221 1_1:-30006439 Msa0017950:CDS
CTTCCTTGGTGGTGCAACTA+TGG 0.232966 1_1:-30007613 Msa0017950:CDS
AGTGATGCTTAGTGCATATT+TGG 0.233603 1_1:-29997090 Msa0017950:three_prime_UTR
CCAAATCAGATTTCAGCTTC+TGG 0.236049 1_1:-30007195 Msa0017950:CDS
ATCTTGCTGCTCTCAAATAT+TGG 0.242252 1_1:-30005926 Msa0017950:CDS
TGACCAACAATGAAAATAAT+TGG 0.248259 1_1:-29997476 Msa0017950:three_prime_UTR
CCAAGGAAGTCTTCTAGTTT+TGG 0.258754 1_1:+30007627 None:intergenic
TATGAAGGGAAAGTGTTATT+AGG 0.280264 1_1:-29996781 Msa0017950:three_prime_UTR
TAGGCAGAGTTGCAGGAAAT+AGG 0.281271 1_1:-30005057 Msa0017950:CDS
CCAGAAGCTGAAATCTGATT+TGG 0.290373 1_1:+30007195 None:intergenic
CTCACCCTACCACATGAAAA+TGG 0.295821 1_1:-30008156 Msa0017950:CDS
GGTTCTGTGGGAACAGTTAA+TGG 0.296492 1_1:-30007285 Msa0017950:CDS
CGAAGTTTGTGACCGCATTT+AGG 0.314036 1_1:+29997670 None:intergenic
CAAATTTGTGCTCAAGCAAT+AGG 0.319506 1_1:-29997024 Msa0017950:three_prime_UTR
AAAAGCATGGAATAGTTGTT+AGG 0.320614 1_1:-29996985 Msa0017950:three_prime_UTR
AACACTTCTTCATTATGTTA+TGG 0.325148 1_1:-30007984 Msa0017950:CDS
TCTTGCTGCTCTCAAATATT+GGG 0.326373 1_1:-30005925 Msa0017950:CDS
TATATAGAACAAACAAAGTT+TGG 0.327149 1_1:-30008425 Msa0017950:five_prime_UTR
TCTTCATTATGTTATGGTCT+TGG 0.331906 1_1:-30007978 Msa0017950:CDS
GATAGTAGTGATGATGATTT+TGG 0.340932 1_1:+30008087 None:intergenic
AGGAAAACTATTAGCACATT+TGG 0.344575 1_1:-30007102 Msa0017950:CDS
GGCTCCTAGAGATTATTCTT+TGG 0.352393 1_1:-30007358 Msa0017950:CDS
AACAATGGCTTTATTAAGCT+TGG 0.358555 1_1:-30007553 Msa0017950:CDS
TGTTGTCTATCAGGCATAGA+TGG 0.363633 1_1:-30006466 Msa0017950:intron
AAGAAGTGTTGTTCATGTTT+AGG 0.365644 1_1:+30007997 None:intergenic
ATGAGTCCTTATCATCTTGT+TGG 0.365906 1_1:+29997317 None:intergenic
AAGAGAAGAATGTTCTCTAT+TGG 0.375080 1_1:+30007494 None:intergenic
TGATGGATCACTTTGCATAA+TGG 0.375080 1_1:-30007904 Msa0017950:CDS
ACTACTTGACTATGTATGAT+TGG 0.378303 1_1:+29997507 None:intergenic
AAGAAATGAATAACATGAAT+AGG 0.381297 1_1:-30005654 Msa0017950:CDS
AATGTATCAAAATCCATTAA+TGG 0.381901 1_1:-30007433 Msa0017950:CDS
GCAAGGATAGGCAGAGTTGC+AGG 0.383894 1_1:-30005064 Msa0017950:CDS
GGATTAGTTAATTGGGGTGT+AGG 0.388738 1_1:-29996898 Msa0017950:three_prime_UTR
TACTAAAGGTGGTTATGATA+TGG 0.390901 1_1:-30005973 Msa0017950:intron
GGAAATAGGGACCTTTATCT+TGG 0.391409 1_1:-30005043 Msa0017950:CDS
TAGATATGAAGCACATTTAT+GGG 0.394942 1_1:-30006438 Msa0017950:CDS
GCTATAAATACTTTCTTCCT+TGG 0.397257 1_1:+30007395 None:intergenic
TACTAAATGTTCCAAGATAA+AGG 0.401696 1_1:+30005032 None:intergenic
TTGCTACTAATGCTGGATCT+TGG 0.403005 1_1:-29997167 Msa0017950:three_prime_UTR
TCAGATTTAAGTGGCATCAT+AGG 0.407236 1_1:+30007924 None:intergenic
TCTAGCAACACCTTGCTTGC+TGG 0.407556 1_1:-29997615 Msa0017950:three_prime_UTR
AATAATAGTGTTGGTAGTAT+TGG 0.414510 1_1:-30007315 Msa0017950:CDS
ATGATGGAAACAATCATAAC+TGG 0.417826 1_1:-30008193 Msa0017950:CDS
AGTCCTATTGCTACTAATGC+TGG 0.421274 1_1:-29997174 Msa0017950:three_prime_UTR
AGGCAGAGTTGCAGGAAATA+GGG 0.422847 1_1:-30005056 Msa0017950:CDS
GGAAAGACAAGTCAATGATT+AGG 0.424295 1_1:+30008295 None:intergenic
GGAAACAATCATAACTGGTT+AGG 0.431973 1_1:-30008188 Msa0017950:CDS
CAATCCCAATGATATCTTGT+AGG 0.432211 1_1:+29997382 None:intergenic
ATGTCCCTACAAGATATCAT+TGG 0.434292 1_1:-29997387 Msa0017950:three_prime_UTR
CAAGCCGCGAAAACCGGAAA+AGG 0.436298 1_1:+29997114 None:intergenic
TCACTCCAAGCCGCGAAAAC+CGG 0.445495 1_1:+29997108 None:intergenic
GAGAAGTTTATATGCGTTGA+AGG 0.446560 1_1:+30005900 None:intergenic
TTCAACGCATATAAACTTCT+CGG 0.459903 1_1:-30005898 Msa0017950:intron
ATTCTTCCAACAAGATGATA+AGG 0.467507 1_1:-29997323 Msa0017950:three_prime_UTR
GATAGTAACATTAGTGATGA+TGG 0.467678 1_1:-30008209 Msa0017950:CDS
GGCACCACCAGCATGGTAGA+TGG 0.470143 1_1:-30005090 Msa0017950:CDS
GTTAGGGTGGGAAGAAAAGA+TGG 0.476655 1_1:-29996968 Msa0017950:three_prime_UTR
GATCCAGCATTAGTAGCAAT+AGG 0.477963 1_1:+29997171 None:intergenic
GTGGGAACAGTTAATGGTTG+TGG 0.486228 1_1:-30007279 Msa0017950:CDS
TGTCCCTACAAGATATCATT+GGG 0.488842 1_1:-29997386 Msa0017950:three_prime_UTR
AGGAGGATCTAGCCAAGTTA+TGG 0.491829 1_1:-29997352 Msa0017950:three_prime_UTR
ATGTATTTGACTCTTGTTGT+GGG 0.492523 1_1:+29997445 None:intergenic
CTAAGCCTTTCTATGAGTCC+TGG 0.494679 1_1:-30007243 Msa0017950:CDS
AAAGCATGGAATAGTTGTTA+GGG 0.498430 1_1:-29996984 Msa0017950:three_prime_UTR
GTTGGTAGTATTGGAGATGA+TGG 0.498430 1_1:-30007306 Msa0017950:CDS
AGGAAAAGAAAAGAAAAGCA+TGG 0.500097 1_1:-29996998 Msa0017950:three_prime_UTR
AGGGGTGCTTCAATGTATAG+AGG 0.507777 1_1:-30005208 Msa0017950:CDS
AATCCCAATGATATCTTGTA+GGG 0.509915 1_1:+29997383 None:intergenic
AATGAATAACATGAATAGGC+AGG 0.510516 1_1:-30005650 Msa0017950:CDS
AATTTGAACTTTGTTACTGA+AGG 0.512391 1_1:+30008274 None:intergenic
TTGCTTGCCATCTACCATGC+TGG 0.513656 1_1:+30005083 None:intergenic
GATGGAAAATATGCTTATGA+AGG 0.514039 1_1:-29996796 Msa0017950:three_prime_UTR
CATGTATTTGACTCTTGTTG+TGG 0.518880 1_1:+29997444 None:intergenic
CAAAGAACTTCTCAGTATAG+AGG 0.520883 1_1:-30007078 Msa0017950:CDS
AAGAGAGGACATGCTAAGGT+TGG 0.521241 1_1:-30007144 Msa0017950:CDS
AATGTTACTATCATTCATCA+TGG 0.522034 1_1:+30008220 None:intergenic
GACATCAAGTAAAAGTTTGA+AGG 0.522129 1_1:+30008029 None:intergenic
TTCCTTGGTGGTGCAACTAT+GGG 0.523268 1_1:-30007612 Msa0017950:CDS
CTCAGTATAGAGGAGTTACA+AGG 0.524809 1_1:-30007068 Msa0017950:intron
TTGGCTCTTTAATTTGTGGA+TGG 0.526271 1_1:-29996814 Msa0017950:three_prime_UTR
AAGGAAGGGCAAACAAGGAA+AGG 0.527415 1_1:-30006401 Msa0017950:CDS
TGACTAGTTTAAGTAGCTCA+AGG 0.531594 1_1:-29997272 Msa0017950:three_prime_UTR
GAAGGGAAAGTGTTATTAGG+AGG 0.531810 1_1:-29996778 Msa0017950:three_prime_UTR
ACTCATAATCATGAATATGA+AGG 0.532843 1_1:-30007588 Msa0017950:CDS
CCAAAACTAGAAGACTTCCT+TGG 0.533305 1_1:-30007627 Msa0017950:CDS
ATGATGCCACTTAAATCTGA+TGG 0.537511 1_1:-30007921 Msa0017950:CDS
AGCTTGTTCACCAGCAAGCA+AGG 0.538209 1_1:+29997605 None:intergenic
TTCAGGCACTCAAGAGGAAG+CGG 0.542228 1_1:-30004740 Msa0017950:intron
TATTGGAGATGATGGTTCTG+TGG 0.544033 1_1:-30007298 Msa0017950:CDS
ACACAGCTTGATTGAGAACC+AGG 0.546355 1_1:+30007225 None:intergenic
GCAAGAAGGAAGGGCAAACA+AGG 0.547287 1_1:-30006406 Msa0017950:CDS
ATGGGATAACAGTTGCAAGA+AGG 0.549719 1_1:-30006420 Msa0017950:CDS
ATTGGGATTGATTCAGTAGG+AGG 0.550416 1_1:-29997369 Msa0017950:three_prime_UTR
AGTGATCCATCAGATTTAAG+TGG 0.553050 1_1:+30007915 None:intergenic
AAGAATCATCTACCATAACT+TGG 0.553088 1_1:+29997340 None:intergenic
TTGTTCATGTTTAGGTGTGA+AGG 0.554526 1_1:+30008005 None:intergenic
GATAATATGTATGTTAGTGA+AGG 0.555129 1_1:-29996928 Msa0017950:three_prime_UTR
TTTGTTGTGCTCACAAGTGA+AGG 0.559343 1_1:-30008456 Msa0017950:five_prime_UTR
TGTATTTGACTCTTGTTGTG+GGG 0.559834 1_1:+29997446 None:intergenic
GACAGAAGCAACCTGCTCAT+AGG 0.560917 1_1:-30007122 Msa0017950:CDS
TAAATGTGCTTCATATCTAC+CGG 0.561083 1_1:+30006442 None:intergenic
AGCCCTGACAACAAAAGTAC+TGG 0.562924 1_1:-29997243 Msa0017950:three_prime_UTR
GAGAACCAGGACTCATAGAA+AGG 0.563571 1_1:+30007238 None:intergenic
GGGGTGCTTCAATGTATAGA+GGG 0.563963 1_1:-30005207 Msa0017950:CDS
TTGTGACCGCATTTAGGCCA+CGG 0.569031 1_1:+29997676 None:intergenic
CATAGGTAAAGAAGAATGAA+AGG 0.572850 1_1:+30007941 None:intergenic
GGTAGATGGCAAGCAAGGAT+AGG 0.573158 1_1:-30005076 Msa0017950:CDS
TCTATCAGGCATAGATGGAC+CGG 0.575721 1_1:-30006461 Msa0017950:intron
TTAGGGTGGGAAGAAAAGAT+GGG 0.579516 1_1:-29996967 Msa0017950:three_prime_UTR
CATCAAGTGAATAATAGTGT+TGG 0.579792 1_1:-30007324 Msa0017950:CDS
AAACTAGAAGACTTCCTTGG+TGG 0.581740 1_1:-30007624 Msa0017950:CDS
CAATGTATAGAGGGGTGACA+AGG 0.582211 1_1:-30005198 Msa0017950:intron
GATAACAGTTGCAAGAAGGA+AGG 0.582613 1_1:-30006416 Msa0017950:CDS
AATATGTTGCTCATTTGAGA+AGG 0.582799 1_1:-30005627 Msa0017950:intron
AGCATGGTAGATGGCAAGCA+AGG 0.586051 1_1:-30005081 Msa0017950:CDS
ATGGAAAATATGCTTATGAA+GGG 0.588795 1_1:-29996795 Msa0017950:three_prime_UTR
CTAGGATGATGATGTTGAGA+AGG 0.590125 1_1:+30008116 None:intergenic
GCATGGAATAGTTGTTAGGG+TGG 0.592091 1_1:-29996981 Msa0017950:three_prime_UTR
TGCTCCAAAGAATAATCTCT+AGG 0.594090 1_1:+30007354 None:intergenic
GACTAGTTTAAGTAGCTCAA+GGG 0.598107 1_1:-29997271 Msa0017950:three_prime_UTR
TTGTGCTCACAAGTGAAGGA+AGG 0.598421 1_1:-30008452 Msa0017950:five_prime_UTR
TGTGCTCAAGCAATAGGAGA+AGG 0.599256 1_1:-29997018 Msa0017950:three_prime_UTR
ATTAAATTCAGGCACTCAAG+AGG 0.602172 1_1:-30004746 Msa0017950:intron
GTTTGAAGGAACAACAGAAG+AGG 0.602261 1_1:+30008043 None:intergenic
TTGGTTTGCAGAAAGAGTAG+TGG 0.602923 1_1:-30005238 Msa0017950:intron
CATTGAGATAGCACTAGCTG+AGG 0.605417 1_1:+29997140 None:intergenic
CTCACTAGATCACAATCTCA+AGG 0.609323 1_1:-30007873 Msa0017950:intron
AGGACATGAAAGAGAAACAA+TGG 0.613993 1_1:-30007568 Msa0017950:CDS
CATGGAATAGTTGTTAGGGT+GGG 0.614104 1_1:-29996980 Msa0017950:three_prime_UTR
CTTGCTGCTCTCAAATATTG+GGG 0.621666 1_1:-30005924 Msa0017950:CDS
GAAGGAACAACAGAAGAGGA+AGG 0.622143 1_1:+30008047 None:intergenic
ATAACAGTTGCAAGAAGGAA+GGG 0.625126 1_1:-30006415 Msa0017950:CDS
GTCATCTTAATGTATGCTAG+TGG 0.628401 1_1:-29996863 Msa0017950:three_prime_UTR
CTTGCCATCTACCATGCTGG+TGG 0.630256 1_1:+30005086 None:intergenic
ATATGGAAGAGAAAGCTGCA+AGG 0.633701 1_1:-30005956 Msa0017950:CDS
ATTGGAGATGATGGTTCTGT+GGG 0.634214 1_1:-30007297 Msa0017950:CDS
TGCTCACAAGTGAAGGAAGG+AGG 0.638349 1_1:-30008449 Msa0017950:five_prime_UTR
TATGGAAGAGAAAGCTGCAA+GGG 0.638891 1_1:-30005955 Msa0017950:CDS
TTCCCATAGTTGCACCACCA+AGG 0.640866 1_1:+30007610 None:intergenic
ATCATTGGGATTGATTCAGT+AGG 0.645337 1_1:-29997372 Msa0017950:three_prime_UTR
CAAACAAGGAAAGGAAGACA+AGG 0.651967 1_1:-30006392 Msa0017950:intron
GACGAGTATGAACAAAATCA+CGG 0.654457 1_1:-29997064 Msa0017950:three_prime_UTR
GGAAGAAGAAGAACAAACCA+AGG 0.657484 1_1:-30007412 Msa0017950:CDS
TTATGCAGGCACCACCAGCA+TGG 0.670111 1_1:-30005097 Msa0017950:intron
ATTGAGATAGCACTAGCTGA+GGG 0.680349 1_1:+29997141 None:intergenic
TAGGATGATGATGTTGAGAA+GGG 0.683404 1_1:+30008117 None:intergenic
GGGTGCTTCAATGTATAGAG+GGG 0.696881 1_1:-30005206 Msa0017950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAAAAAATAAT+CGG + chr1_1:29999415-29999434 Msa0017960:intron 0.0%
!!! GTAAAATATTTAAGAATTTT+TGG + chr1_1:29998822-29998841 Msa0017960:intron 10.0%
!!! CATTTTTAAATAATCTATAA+AGG + chr1_1:30000037-30000056 Msa0017960:intron 10.0%
!!! TAATAAGTTTAATTTTTTTG+AGG - chr1_1:30001042-30001061 Msa0017950:intron 10.0%
!!! ATTTAATAGTTTTATGTTAT+GGG + chr1_1:30001829-30001848 None:intergenic 10.0%
!!! TATTTAATAGTTTTATGTTA+TGG + chr1_1:30001830-30001849 None:intergenic 10.0%
!! TAAGGATAAATTAAAATATA+AGG + chr1_1:30002024-30002043 None:intergenic 10.0%
!!! TATTTTAATTTATCCTTAAT+TGG - chr1_1:30002026-30002045 Msa0017950:intron 10.0%
!!! ATTTTAATTTATCCTTAATT+GGG - chr1_1:30002027-30002046 Msa0017950:intron 10.0%
!! ACAACTTAAAACTAAAAAAA+TGG + chr1_1:29997399-29997418 None:intergenic 15.0%
!!! TTTTATTTATTAACATGTGT+GGG + chr1_1:29998474-29998493 Msa0017960:CDS 15.0%
!!! TTTTTATTTATTAACATGTG+TGG + chr1_1:29998475-29998494 Msa0017960:CDS 15.0%
!! AAAAAATAGATCTATGAAAA+AGG + chr1_1:29999126-29999145 Msa0017960:CDS 15.0%
!! ATAAATGTAATTAAATGTGT+CGG + chr1_1:30000330-30000349 Msa0017960:intron 15.0%
!! TTTAATTCGAAAAAATTACT+AGG + chr1_1:30000421-30000440 Msa0017960:intron 15.0%
!!! AATTTTTTCGAATTAAATTC+AGG - chr1_1:30000424-30000443 Msa0017950:intron 15.0%
!! ATTTACTCTAAATAAAACTA+TGG + chr1_1:30000838-30000857 Msa0017960:intron 15.0%
!!! AATTATATATTGCATTTTGA+AGG - chr1_1:30001147-30001166 Msa0017950:intron 15.0%
!! AAGGAAAAATTTGATTATAT+AGG - chr1_1:30001166-30001185 Msa0017950:intron 15.0%
!!! TTATAATTTTTTTATGTCGA+AGG - chr1_1:30001620-30001639 Msa0017950:intron 15.0%
!! ATTTCTCTAATTTAAATGAA+GGG - chr1_1:30002194-30002213 Msa0017950:intron 15.0%
!!! ATTTTATCATTTGAAAATCA+TGG + chr1_1:30002296-30002315 None:intergenic 15.0%
!!! TGATTTTCAAATGATAAAAT+TGG - chr1_1:30002296-30002315 Msa0017950:intron 15.0%
!!! GATTTTCAAATGATAAAATT+GGG - chr1_1:30002297-30002316 Msa0017950:intron 15.0%
!! AACATCATAATGTAAAAAAA+TGG + chr1_1:30003429-30003448 None:intergenic 15.0%
!! TGATCAATTATTGTAAAAAT+AGG - chr1_1:30003460-30003479 Msa0017950:intron 15.0%
!! TTCATGAATAAATTAATCAA+TGG - chr1_1:30003506-30003525 Msa0017950:intron 15.0%
!! AATAATATATGTATGTACTT+AGG + chr1_1:30003835-30003854 None:intergenic 15.0%
!!! TACATAATTTAGAATTTGAA+GGG + chr1_1:30004326-30004345 None:intergenic 15.0%
!!! ATTACTTTCCTTTATTTTTA+AGG - chr1_1:30004735-30004754 Msa0017950:CDS 15.0%
!!! ATTATCTTAAGTTTCATTTT+GGG + chr1_1:30005091-30005110 None:intergenic 15.0%
!!! TATTATCTTAAGTTTCATTT+TGG + chr1_1:30005092-30005111 None:intergenic 15.0%
!!! TAAAGAATTTTCTATTTTCT+AGG - chr1_1:30005395-30005414 Msa0017950:intron 15.0%
!! ATTAAAATTCTAAACAATCA+AGG - chr1_1:30006423-30006442 Msa0017950:CDS 15.0%
!!! CAGAATTTCTAATTAATTTT+TGG + chr1_1:30007766-30007785 None:intergenic 15.0%
!! TATATAGAACAAACAAAGTT+TGG - chr1_1:29996756-29996775 Msa0017950:three_prime_UTR 20.0%
!! AAAGAAAGAAAATAAACACA+TGG + chr1_1:29997346-29997365 None:intergenic 20.0%
!!! GCTTATTTTCATAAACTATT+AGG + chr1_1:29997435-29997454 None:intergenic 20.0%
!! CTATAACAATCAATTCAAAA+TGG + chr1_1:29997514-29997533 None:intergenic 20.0%
!! AATGTATCAAAATCCATTAA+TGG - chr1_1:29997748-29997767 Msa0017950:intron 20.0%
!!! AATAAGCTCTAATTATTAGT+GGG + chr1_1:29998175-29998194 Msa0017960:CDS 20.0%
!!! AAATAAGCTCTAATTATTAG+TGG + chr1_1:29998176-29998195 Msa0017960:CDS 20.0%
!! TTTATTTATTAACATGTGTG+GGG + chr1_1:29998473-29998492 Msa0017960:CDS 20.0%
!!! TAATATATTGACTTGTTTTG+AGG - chr1_1:29998523-29998542 Msa0017950:intron 20.0%
!! GATGACAAATAATTGAAATA+AGG + chr1_1:29998567-29998586 Msa0017960:intron 20.0%
!!! CTTTTTACATCTGAAAATAT+TGG - chr1_1:29998996-29999015 Msa0017950:intron 20.0%
!!! GTTTGTTAAAATGTTACTAA+AGG - chr1_1:29999194-29999213 Msa0017950:intron 20.0%
!! AAGAAATGAATAACATGAAT+AGG - chr1_1:29999527-29999546 Msa0017950:intron 20.0%
!! TTAGTCTCTTAGAATAATAA+AGG - chr1_1:29999652-29999671 Msa0017950:intron 20.0%
!!! AATGATTTTGTACTAACTTT+AGG - chr1_1:30000053-30000072 Msa0017950:intron 20.0%
!!! TACATGTAAATGCTATTTAT+TGG + chr1_1:30000182-30000201 Msa0017960:intron 20.0%
!! CTAAAAAAGTCCATTATTTA+TGG + chr1_1:30000218-30000237 Msa0017960:intron 20.0%
!!! CATAAATAATGGACTTTTTT+AGG - chr1_1:30000216-30000235 Msa0017950:intron 20.0%
!! NNNNNNNNNNGTGATAACAC+CGG - chr1_1:30000576-30000595 Msa0017950:intron 20.0%
!! AGACAAAAATATTCATCATA+AGG - chr1_1:30000657-30000676 Msa0017950:intron 20.0%
!! GTATATCTTACAAATTATGA+AGG + chr1_1:30000969-30000988 Msa0017960:intron 20.0%
!!! GGAAAAATTCTAAAATTATG+AGG + chr1_1:30001409-30001428 Msa0017960:three_prime_UTR 20.0%
!!! AAAAATTGGCATTTTTTTAG+TGG - chr1_1:30001647-30001666 Msa0017950:intron 20.0%
!! TCAATATATAACACTTATTG+TGG - chr1_1:30001672-30001691 Msa0017950:intron 20.0%
!! GTGTTTATAATATTATTGAC+AGG - chr1_1:30001851-30001870 Msa0017950:intron 20.0%
!! CATTTCTCTAATTTAAATGA+AGG - chr1_1:30002193-30002212 Msa0017950:intron 20.0%
!! ATGCAAAATTCATATTAACA+GGG - chr1_1:30002692-30002711 Msa0017950:intron 20.0%
!! TACACACATGAATATATATA+AGG + chr1_1:30003560-30003579 None:intergenic 20.0%
!!! TTCTTTATGCTTTTTGATTA+AGG + chr1_1:30004064-30004083 None:intergenic 20.0%
!! TGTAAGTTATGCAAATTTAA+TGG - chr1_1:30004093-30004112 Msa0017950:intron 20.0%
!! ATAGTAATTTAGTAAACTTG+AGG - chr1_1:30004131-30004150 Msa0017950:intron 20.0%
!!! CTACATAATTTAGAATTTGA+AGG + chr1_1:30004327-30004346 None:intergenic 20.0%
!! TATGATGAAGTAAAAAAAAG+TGG - chr1_1:30004835-30004854 Msa0017950:intron 20.0%
!! AAGATAATATATGTGTATGT+AGG - chr1_1:30005103-30005122 Msa0017950:intron 20.0%
!!! TCTTTATATGACATTGATTT+CGG - chr1_1:30005674-30005693 Msa0017950:CDS 20.0%
!!! TTTTTTCATCTGCTAAATAA+AGG + chr1_1:30005724-30005743 None:intergenic 20.0%
!!! TTTAGAATTTTAATATGCTC+TGG + chr1_1:30006417-30006436 None:intergenic 20.0%
!!! CTTTATTTAATAAGCAAGAT+CGG + chr1_1:30007300-30007319 None:intergenic 20.0%
!!! TGAGTTTGTTTTTTTGTATT+TGG + chr1_1:30007359-30007378 None:intergenic 20.0%
!! NNNNNNNNAATCAAATTCCG+TGG - chr1_1:30007488-30007507 Msa0017950:CDS 20.0%
!!! ATTCCAATTATTTTCATTGT+TGG + chr1_1:30007711-30007730 None:intergenic 20.0%
!!! AATTTTGGGATTAGTTAATT+GGG - chr1_1:30008276-30008295 Msa0017950:five_prime_UTR 20.0%
! AAAAACACAAATGTTCAACT+TGG + chr1_1:29996842-29996861 None:intergenic 25.0%
! AATTTGAACTTTGTTACTGA+AGG + chr1_1:29996910-29996929 None:intergenic 25.0%
! AATGTTACTATCATTCATCA+TGG + chr1_1:29996964-29996983 None:intergenic 25.0%
! AACACTTCTTCATTATGTTA+TGG - chr1_1:29997197-29997216 Msa0017950:three_prime_UTR 25.0%
! ACTCATAATCATGAATATGA+AGG - chr1_1:29997593-29997612 Msa0017950:three_prime_UTR 25.0%
! AACCTGAAAAATATGAAGAA+TGG + chr1_1:29997715-29997734 None:intergenic 25.0%
! TTATAGCTTCAAAAACTTTG+TGG - chr1_1:29997802-29997821 Msa0017950:intron 25.0%
!!! AATAATAGTGTTGGTAGTAT+TGG - chr1_1:29997866-29997885 Msa0017950:intron 25.0%
! TGGTTTATAGAACAAAATAG+AGG + chr1_1:29998220-29998239 Msa0017960:CDS 25.0%
!!! TCTATAAACCAAAGTTGATA+TGG - chr1_1:29998229-29998248 Msa0017950:intron 25.0%
! TTCAACCTTAGTGTTTATAT+CGG - chr1_1:29998303-29998322 Msa0017950:intron 25.0%
! TTATTTATTAACATGTGTGG+GGG + chr1_1:29998472-29998491 Msa0017960:CDS 25.0%
! TGATGAGAAAGTTTCAAAAA+TGG - chr1_1:29998618-29998637 Msa0017950:intron 25.0%
! TAGATATGAAGCACATTTAT+GGG - chr1_1:29998743-29998762 Msa0017950:intron 25.0%
! TTCACACAGATATGTATAAA+TGG + chr1_1:29998964-29998983 Msa0017960:intron 25.0%
! ATTGTACATCACAGTTTATT+TGG - chr1_1:29999087-29999106 Msa0017950:intron 25.0%
! TTGTACATCACAGTTTATTT+GGG - chr1_1:29999088-29999107 Msa0017950:intron 25.0%
! CCATATATATCAGATATAGT+GGG + chr1_1:29999165-29999184 Msa0017960:CDS 25.0%
! ACCATATATATCAGATATAG+TGG + chr1_1:29999166-29999185 Msa0017960:CDS 25.0%
! TGTTAAAATGTTACTAAAGG+TGG - chr1_1:29999197-29999216 Msa0017950:intron 25.0%
! TTTAAAAAAATAATCGGGCA+AGG + chr1_1:29999409-29999428 Msa0017960:intron 25.0%
! CTAATTGCCTTTATTATCTT+TGG - chr1_1:29999476-29999495 Msa0017950:intron 25.0%
!!! ACTTACTAACTTGCTATTAT+TGG - chr1_1:29999584-29999603 Msa0017950:intron 25.0%
! AACAAAGTAATTAGAGTGAA+GGG + chr1_1:29999867-29999886 Msa0017960:intron 25.0%
!! ATATGATGATACTAAGCTTT+TGG - chr1_1:29999920-29999939 Msa0017950:intron 25.0%
! CTATAAAGGAAAATAGACAT+AGG + chr1_1:30000023-30000042 Msa0017960:intron 25.0%
!! TTTAGGTTTAAATGTTATGC+AGG - chr1_1:30000070-30000089 Msa0017950:intron 25.0%
! TACTAAATGTTCCAAGATAA+AGG + chr1_1:30000152-30000171 Msa0017960:intron 25.0%
!! TGTAAATGCTATTTATTGGA+CGG + chr1_1:30000178-30000197 Msa0017960:intron 25.0%
!!! GACTTTTTTAGGTAATAACT+TGG - chr1_1:30000227-30000246 Msa0017950:intron 25.0%
!! AAAAAATTACTAGGCGTTTT+AGG + chr1_1:30000412-30000431 Msa0017960:intron 25.0%
! ATAAGGATGTAAAGTACAAA+GGG - chr1_1:30000674-30000693 Msa0017950:intron 25.0%
! CAATGCAGTTAGAAATAATT+GGG - chr1_1:30000750-30000769 Msa0017950:intron 25.0%
! AATGCAGTTAGAAATAATTG+GGG - chr1_1:30000751-30000770 Msa0017950:intron 25.0%
! TGATTATTTACCAATCAACT+TGG - chr1_1:30000867-30000886 Msa0017950:intron 25.0%
!!! TAAGATAAAACCAAGTTGAT+TGG + chr1_1:30000880-30000899 Msa0017960:intron 25.0%
! TTTATCTTATTGTTTGCAGA+TGG - chr1_1:30000891-30000910 Msa0017950:intron 25.0%
! ATCTTACAAATTATGAAGGA+TGG + chr1_1:30000965-30000984 Msa0017960:intron 25.0%
!!! TATGATGATGGCAAATTATA+TGG + chr1_1:30001430-30001449 Msa0017960:three_prime_UTR 25.0%
! TTAGAATGTGAATATGATGA+TGG + chr1_1:30001442-30001461 Msa0017960:three_prime_UTR 25.0%
!!! TATTTTTCCTTTCAAGTTGA+TGG - chr1_1:30001547-30001566 Msa0017950:intron 25.0%
! ATGTCGAAGGAAAAAAAAAT+TGG - chr1_1:30001633-30001652 Msa0017950:intron 25.0%
! TATAAACTAAACATGTCACA+CGG + chr1_1:30001965-30001984 None:intergenic 25.0%
! AAAATATAAGGTCAAATGAG+AGG + chr1_1:30002012-30002031 None:intergenic 25.0%
! AATGTTAAAGAATGTCCTTA+GGG + chr1_1:30002177-30002196 None:intergenic 25.0%
! AAATGTTAAAGAATGTCCTT+AGG + chr1_1:30002178-30002197 None:intergenic 25.0%
! ATCATTTGAAAATCATGGAA+GGG + chr1_1:30002291-30002310 None:intergenic 25.0%
! TATCATTTGAAAATCATGGA+AGG + chr1_1:30002292-30002311 None:intergenic 25.0%
! AATGATAAAATTGGGATATC+TGG - chr1_1:30002305-30002324 Msa0017950:intron 25.0%
! CTTCTTTCATCAATTTCTTT+AGG + chr1_1:30002607-30002626 None:intergenic 25.0%
! AGAAATGTTGAAGGAAAATA+AGG - chr1_1:30002669-30002688 Msa0017950:intron 25.0%
! GATGCAAAATTCATATTAAC+AGG - chr1_1:30002691-30002710 Msa0017950:intron 25.0%
!!! TTAGAAGGTGTTTATACATT+TGG - chr1_1:30002793-30002812 Msa0017950:intron 25.0%
!!! TAGAAGGTGTTTATACATTT+GGG - chr1_1:30002794-30002813 Msa0017950:intron 25.0%
! ATATGTTTACTCCAATGATA+TGG - chr1_1:30002894-30002913 Msa0017950:intron 25.0%
! TTTACTTTACTTGTCTAGAA+AGG - chr1_1:30003049-30003068 Msa0017950:intron 25.0%
! AAAGAGAAATAGTTCTTGTT+TGG + chr1_1:30003129-30003148 None:intergenic 25.0%
! TACTCTTTACCTATAACAAA+TGG + chr1_1:30003213-30003232 None:intergenic 25.0%
!! GTAAAGAGTATAAACAGAAT+TGG - chr1_1:30003223-30003242 Msa0017950:intron 25.0%
! TGAATATATATAAGGATCAC+TGG + chr1_1:30003552-30003571 None:intergenic 25.0%
! TGAATATCATCTATAGTAGA+AGG + chr1_1:30003735-30003754 None:intergenic 25.0%
! TTACTATGTTGACACTAAAT+TGG + chr1_1:30003956-30003975 None:intergenic 25.0%
!! AAAAAGCATAAAGAAGAACA+AGG - chr1_1:30004069-30004088 Msa0017950:intron 25.0%
! TTACACATAACCTAAAACTA+TGG - chr1_1:30004279-30004298 Msa0017950:intron 25.0%
! ATTGTATGCTAATATATTCG+TGG + chr1_1:30004393-30004412 None:intergenic 25.0%
! TTTGTTCATAATCTTATCCA+TGG - chr1_1:30004643-30004662 Msa0017950:intron 25.0%
!!! TCCTTTATTTTTAAGGAGAA+AGG - chr1_1:30004742-30004761 Msa0017950:intron 25.0%
!!! CCTTTATTTTTAAGGAGAAA+GGG - chr1_1:30004743-30004762 Msa0017950:intron 25.0%
!!! ATTGACTTGCTTTTACTATT+GGG + chr1_1:30004981-30005000 None:intergenic 25.0%
!!! TATTGACTTGCTTTTACTAT+TGG + chr1_1:30004982-30005001 None:intergenic 25.0%
!!! AAAACTCATATTACTGACTT+AGG + chr1_1:30005342-30005361 None:intergenic 25.0%
!!! TTTTCTAGGTTGAATTGAAT+AGG - chr1_1:30005409-30005428 Msa0017950:intron 25.0%
! TTATTACCACCTTTCAAATA+TGG + chr1_1:30005449-30005468 None:intergenic 25.0%
!!! CACTAAATTTGCTATGTTAT+TGG + chr1_1:30005525-30005544 None:intergenic 25.0%
!!! TTTCTCTAAAATGGATATCA+GGG + chr1_1:30005944-30005963 None:intergenic 25.0%
!!! TTTTCTTTTCTTTTTCACGT+TGG + chr1_1:30006158-30006177 None:intergenic 25.0%
!!! TATGTTTTGAATCTGATTTG+CGG + chr1_1:30006317-30006336 None:intergenic 25.0%
! ATTCATTAAATCAGAGTCTT+TGG + chr1_1:30006370-30006389 None:intergenic 25.0%
! TGACCAACAATGAAAATAAT+TGG - chr1_1:30007705-30007724 Msa0017950:intron 25.0%
! GATAATATGTATGTTAGTGA+AGG - chr1_1:30008253-30008272 Msa0017950:five_prime_UTR 25.0%
!! TATGTTAGTGAAGGAATTTT+GGG - chr1_1:30008262-30008281 Msa0017950:five_prime_UTR 25.0%
!!! GAATTTTGGGATTAGTTAAT+TGG - chr1_1:30008275-30008294 Msa0017950:five_prime_UTR 25.0%
!!! ATTTTGGGATTAGTTAATTG+GGG - chr1_1:30008277-30008296 Msa0017950:five_prime_UTR 25.0%
! ATGGAAAATATGCTTATGAA+GGG - chr1_1:30008386-30008405 Msa0017950:five_prime_UTR 25.0%
CATCTTCTTGCTTCTTAAAA+AGG + chr1_1:29996937-29996956 None:intergenic 30.0%
GATAGTAACATTAGTGATGA+TGG - chr1_1:29996972-29996991 Msa0017950:three_prime_UTR 30.0%
! ATGATGGAAACAATCATAAC+TGG - chr1_1:29996988-29997007 Msa0017950:three_prime_UTR 30.0%
!! GATAGTAGTGATGATGATTT+TGG + chr1_1:29997097-29997116 None:intergenic 30.0%
GACATCAAGTAAAAGTTTGA+AGG + chr1_1:29997155-29997174 None:intergenic 30.0%
!! AAGAAGTGTTGTTCATGTTT+AGG + chr1_1:29997187-29997206 None:intergenic 30.0%
TCTTCATTATGTTATGGTCT+TGG - chr1_1:29997203-29997222 Msa0017950:three_prime_UTR 30.0%
CATAGGTAAAGAAGAATGAA+AGG + chr1_1:29997243-29997262 None:intergenic 30.0%
!! AACAATGGCTTTATTAAGCT+TGG - chr1_1:29997628-29997647 Msa0017950:three_prime_UTR 30.0%
AAGAGAAGAATGTTCTCTAT+TGG + chr1_1:29997690-29997709 None:intergenic 30.0%
! GACCATTCTTCATATTTTTC+AGG - chr1_1:29997710-29997729 Msa0017950:intron 30.0%
!!! TTTTCAGGTTTTTCTTGTCA+TGG - chr1_1:29997725-29997744 Msa0017950:intron 30.0%
TGTTCTTCTTCTTCCATTAA+TGG + chr1_1:29997764-29997783 None:intergenic 30.0%
GCTATAAATACTTTCTTCCT+TGG + chr1_1:29997789-29997808 None:intergenic 30.0%
CATCAAGTGAATAATAGTGT+TGG - chr1_1:29997857-29997876 Msa0017950:intron 30.0%
AGGAAAACTATTAGCACATT+TGG - chr1_1:29998079-29998098 Msa0017950:intron 30.0%
TCAACCTTAGTGTTTATATC+GGG - chr1_1:29998304-29998323 Msa0017950:intron 30.0%
TACTTGTGTGACATTAAATC+TGG - chr1_1:29998347-29998366 Msa0017950:intron 30.0%
ATTAAATCTGGATCACACAT+TGG - chr1_1:29998359-29998378 Msa0017950:intron 30.0%
TTAAATCTGGATCACACATT+GGG - chr1_1:29998360-29998379 Msa0017950:intron 30.0%
TATTTATTAACATGTGTGGG+GGG + chr1_1:29998471-29998490 Msa0017960:CDS 30.0%
GAATTCGAATGGTTTAACTA+TGG + chr1_1:29998598-29998617 Msa0017960:intron 30.0%
!!! GGTTTTAATTTTATGAGCCT+TGG - chr1_1:29998639-29998658 Msa0017950:intron 30.0%
AACAACTAAAACAATTGCCA+AGG + chr1_1:29998659-29998678 Msa0017960:intron 30.0%
!! TTGTTTGTTTGTTGTCTATC+AGG - chr1_1:29998706-29998725 Msa0017950:intron 30.0%
TAAATGTGCTTCATATCTAC+CGG + chr1_1:29998742-29998761 Msa0017960:intron 30.0%
GTAGATATGAAGCACATTTA+TGG - chr1_1:29998742-29998761 Msa0017950:intron 30.0%
GTTGACAAAGTTCAGAATAA+TGG + chr1_1:29999023-29999042 Msa0017960:intron 30.0%
! TATCAGATATAGTGGGAATA+GGG + chr1_1:29999158-29999177 Msa0017960:CDS 30.0%
! ATATCAGATATAGTGGGAAT+AGG + chr1_1:29999159-29999178 Msa0017960:CDS 30.0%
CCCACTATATCTGATATATA+TGG - chr1_1:29999162-29999181 Msa0017950:intron 30.0%
TACTAAAGGTGGTTATGATA+TGG - chr1_1:29999208-29999227 Msa0017950:intron 30.0%
TTCAACGCATATAAACTTCT+CGG - chr1_1:29999283-29999302 Msa0017950:intron 30.0%
! AAATCGAGCGAAATTTTTAC+TGG - chr1_1:29999435-29999454 Msa0017950:intron 30.0%
ATAAAGGCAATTAGACTCTA+AGG + chr1_1:29999470-29999489 Msa0017960:intron 30.0%
CAATCTGCCAAAGATAATAA+AGG + chr1_1:29999486-29999505 Msa0017960:intron 30.0%
AATGAATAACATGAATAGGC+AGG - chr1_1:29999531-29999550 Msa0017950:intron 30.0%
AATATGTTGCTCATTTGAGA+AGG - chr1_1:29999554-29999573 Msa0017950:intron 30.0%
!!! AGATGATGCATTTTTTCTCA+AGG + chr1_1:29999629-29999648 Msa0017960:intron 30.0%
AAGTAAAGACTAAGTTGTCT+CGG - chr1_1:29999755-29999774 Msa0017950:intron 30.0%
!!! TTGTGTTAGCCATTTTTTCT+TGG - chr1_1:29999829-29999848 Msa0017950:intron 30.0%
!!! TGTGTTAGCCATTTTTTCTT+GGG - chr1_1:29999830-29999849 Msa0017950:intron 30.0%
TTGTGATACCCAAGAAAAAA+TGG + chr1_1:29999841-29999860 Msa0017960:intron 30.0%
CAACAAAGTAATTAGAGTGA+AGG + chr1_1:29999868-29999887 Msa0017960:intron 30.0%
!! AAAGAGTAGTGGTTTTTCAA+GGG - chr1_1:29999954-29999973 Msa0017950:intron 30.0%
CATTACACAGCCATAAATAA+TGG - chr1_1:30000205-30000224 Msa0017950:intron 30.0%
!!! CAAAGTCTCATCAACTTTTT+TGG - chr1_1:30000286-30000305 Msa0017950:intron 30.0%
CATAAGGATGTAAAGTACAA+AGG - chr1_1:30000673-30000692 Msa0017950:intron 30.0%
GCAATGCAGTTAGAAATAAT+TGG - chr1_1:30000749-30000768 Msa0017950:intron 30.0%
! TTGTTTGCAGATGGAATTTT+TGG - chr1_1:30000900-30000919 Msa0017950:intron 30.0%
! TGTTTGCAGATGGAATTTTT+GGG - chr1_1:30000901-30000920 Msa0017950:intron 30.0%
GATATACGAACGTAGAAATT+TGG - chr1_1:30000982-30001001 Msa0017950:intron 30.0%
ATGTTCTCAAAAGTCAACTT+AGG + chr1_1:30001079-30001098 Msa0017960:intron 30.0%
GAAAATAATGCAATGCTACT+AGG - chr1_1:30001233-30001252 Msa0017950:intron 30.0%
TTTATAACAGCATTGTTTCG+TGG - chr1_1:30001264-30001283 Msa0017950:intron 30.0%
AATGTACGTAAATGTTAGGT+GGG + chr1_1:30001312-30001331 Msa0017960:three_prime_UTR 30.0%
CATCAATGTACGTAAATGTT+AGG + chr1_1:30001316-30001335 Msa0017960:three_prime_UTR 30.0%
CTAACATTTACGTACATTGA+TGG - chr1_1:30001314-30001333 Msa0017950:intron 30.0%
! GTCATTCTCAACATCAATTT+TGG + chr1_1:30001484-30001503 Msa0017960:three_prime_UTR 30.0%
TGAGAAAGTCAAATATGTGT+AGG + chr1_1:30001886-30001905 None:intergenic 30.0%
ATGTCACATGTATAGAGATA+TGG + chr1_1:30001921-30001940 None:intergenic 30.0%
TTGTTAGCATAACCCAATTA+AGG + chr1_1:30002042-30002061 None:intergenic 30.0%
!! CTTTTGTAGACTCCATTTTT+TGG + chr1_1:30002399-30002418 None:intergenic 30.0%
ATATTAACAGGGCATAGTTT+GGG - chr1_1:30002703-30002722 Msa0017950:intron 30.0%
ATGTATTGAAATCCAGATTC+TGG - chr1_1:30003095-30003114 Msa0017950:intron 30.0%
! AGAACTATTTCTCTTTGTTC+TGG - chr1_1:30003133-30003152 Msa0017950:intron 30.0%
! GAACTATTTCTCTTTGTTCT+GGG - chr1_1:30003134-30003153 Msa0017950:intron 30.0%
AAAGATCTTAAACGCAGTTT+GGG - chr1_1:30003164-30003183 Msa0017950:intron 30.0%
!! TTCCTTCTACCATTTGTTAT+AGG - chr1_1:30003201-30003220 Msa0017950:intron 30.0%
TACCTATAACAAATGGTAGA+AGG + chr1_1:30003206-30003225 None:intergenic 30.0%
! GTATAAACAGAATTGGTTCA+TGG - chr1_1:30003230-30003249 Msa0017950:intron 30.0%
! TGCTTCAATGATACAACTTT+TGG + chr1_1:30003590-30003609 None:intergenic 30.0%
AAGCAAAATCAGTATGTGAT+AGG - chr1_1:30003605-30003624 Msa0017950:intron 30.0%
AGCAAAATCAGTATGTGATA+GGG - chr1_1:30003606-30003625 Msa0017950:intron 30.0%
TTGAACAGAAACTATCAAGT+AGG - chr1_1:30003771-30003790 Msa0017950:intron 30.0%
! AGGAAAAAGAGTACAAAAAG+AGG - chr1_1:30003791-30003810 Msa0017950:intron 30.0%
!! AGAGGCTTATTTCTAAAGTT+TGG - chr1_1:30003809-30003828 Msa0017950:intron 30.0%
ATGCAAATTTAATGGCAAGT+AGG - chr1_1:30004101-30004120 Msa0017950:intron 30.0%
AATTTAATGGCAAGTAGGTA+AGG - chr1_1:30004106-30004125 Msa0017950:intron 30.0%
ATTTAATGGCAAGTAGGTAA+GGG - chr1_1:30004107-30004126 Msa0017950:intron 30.0%
TAGGTTATGTGTAAGTGTAA+AGG + chr1_1:30004273-30004292 None:intergenic 30.0%
! GTCAATTGTACCATAGTTTT+AGG + chr1_1:30004292-30004311 None:intergenic 30.0%
AGCATACAATTCATCTTACT+AGG - chr1_1:30004403-30004422 Msa0017950:intron 30.0%
!! TTTGCTATTTCAGATGAAGT+TGG + chr1_1:30004687-30004706 None:intergenic 30.0%
CCCTTTCTCCTTAAAAATAA+AGG + chr1_1:30004746-30004765 None:intergenic 30.0%
TCTTTCCCTAAGTTCAATTT+CGG + chr1_1:30005024-30005043 None:intergenic 30.0%
AAATTGAACTTAGGGAAAGA+GGG - chr1_1:30005024-30005043 Msa0017950:intron 30.0%
ACCCTGAAATAAAGAAAACA+AGG - chr1_1:30005059-30005078 Msa0017950:CDS 30.0%
!!! CCCTTGTTTTCTTTATTTCA+GGG + chr1_1:30005063-30005082 None:intergenic 30.0%
CCCTGAAATAAAGAAAACAA+GGG - chr1_1:30005060-30005079 Msa0017950:CDS 30.0%
!!! TCCCTTGTTTTCTTTATTTC+AGG + chr1_1:30005064-30005083 None:intergenic 30.0%
TACATAAAAATCCCTTCAAG+TGG - chr1_1:30005169-30005188 Msa0017950:intron 30.0%
TAAACAAAGAACCACTTGAA+GGG + chr1_1:30005183-30005202 None:intergenic 30.0%
!! AGTAAATTTTGTTTGTCCCA+GGG + chr1_1:30005287-30005306 None:intergenic 30.0%
CAATCAGTACCATATTTGAA+AGG - chr1_1:30005437-30005456 Msa0017950:intron 30.0%
ACTCCAACCATATAATTTCA+AGG - chr1_1:30005569-30005588 Msa0017950:intron 30.0%
CTACCTTGAAATTATATGGT+TGG + chr1_1:30005575-30005594 None:intergenic 30.0%
TGAGCTACCTTGAAATTATA+TGG + chr1_1:30005579-30005598 None:intergenic 30.0%
TATAATTTCAAGGTAGCTCA+TGG - chr1_1:30005579-30005598 Msa0017950:intron 30.0%
!! CTTTCTCTAAAATGGATATC+AGG + chr1_1:30005945-30005964 None:intergenic 30.0%
! GAGTATCTCTTTCTCTAAAA+TGG + chr1_1:30005953-30005972 None:intergenic 30.0%
CACATAATACTAACATGACA+TGG - chr1_1:30006213-30006232 Msa0017950:intron 30.0%
! GCATAATAGTTTTCATAACG+TGG - chr1_1:30006265-30006284 Msa0017950:intron 30.0%
AGAGTCTTTGGATGAAAATT+GGG + chr1_1:30006358-30006377 None:intergenic 30.0%
CTGTATTAACTATTGTGATG+TGG + chr1_1:30006488-30006507 None:intergenic 30.0%
TCACAACTCAAAACTAGATA+AGG - chr1_1:30006569-30006588 Msa0017950:intron 30.0%
TAAGATTAGCATAACAACCT+CGG - chr1_1:30006618-30006637 Msa0017950:intron 30.0%
TGGATTAAGAATGTCAAGAT+CGG + chr1_1:30007339-30007358 None:intergenic 30.0%
AGACAGTAATGAAAAAACTG+AGG - chr1_1:30007619-30007638 Msa0017950:CDS 30.0%
! AACATTGTTGTTACACTCTT+TGG + chr1_1:30007645-30007664 None:intergenic 30.0%
ACTACTTGACTATGTATGAT+TGG + chr1_1:30007677-30007696 None:intergenic 30.0%
! ATGTATTTGACTCTTGTTGT+GGG + chr1_1:30007739-30007758 None:intergenic 30.0%
AATCCCAATGATATCTTGTA+GGG + chr1_1:30007801-30007820 None:intergenic 30.0%
AAGAATCATCTACCATAACT+TGG + chr1_1:30007844-30007863 None:intergenic 30.0%
ATTCTTCCAACAAGATGATA+AGG - chr1_1:30007858-30007877 Msa0017950:intron 30.0%
!!! GTTTTGGAAAAAGCATTGTA+GGG + chr1_1:30007964-30007983 None:intergenic 30.0%
AGGAAAAGAAAAGAAAAGCA+TGG - chr1_1:30008183-30008202 Msa0017950:CDS 30.0%
! AAAAGCATGGAATAGTTGTT+AGG - chr1_1:30008196-30008215 Msa0017950:CDS 30.0%
AAAGCATGGAATAGTTGTTA+GGG - chr1_1:30008197-30008216 Msa0017950:CDS 30.0%
! GTATGTTAGTGAAGGAATTT+TGG - chr1_1:30008261-30008280 Msa0017950:five_prime_UTR 30.0%
!!! CTTTTTGGCTCTTTAATTTG+TGG - chr1_1:30008363-30008382 Msa0017950:five_prime_UTR 30.0%
GATGGAAAATATGCTTATGA+AGG - chr1_1:30008385-30008404 Msa0017950:five_prime_UTR 30.0%
!! TATGAAGGGAAAGTGTTATT+AGG - chr1_1:30008400-30008419 Msa0017950:five_prime_UTR 30.0%
GGAAAGACAAGTCAATGATT+AGG + chr1_1:29996889-29996908 None:intergenic 35.0%
GGAAACAATCATAACTGGTT+AGG - chr1_1:29996993-29997012 Msa0017950:three_prime_UTR 35.0%
! AAGTAAGCTCCATTTTCATG+TGG + chr1_1:29997037-29997056 None:intergenic 35.0%
! TAGGATGATGATGTTGAGAA+GGG + chr1_1:29997067-29997086 None:intergenic 35.0%
!!! TGATGATTTTGGTGATGACT+AGG + chr1_1:29997086-29997105 None:intergenic 35.0%
TTGTTCATGTTTAGGTGTGA+AGG + chr1_1:29997179-29997198 None:intergenic 35.0%
TCAGATTTAAGTGGCATCAT+AGG + chr1_1:29997260-29997279 None:intergenic 35.0%
! ATGATGCCACTTAAATCTGA+TGG - chr1_1:29997260-29997279 Msa0017950:three_prime_UTR 35.0%
AGTGATCCATCAGATTTAAG+TGG + chr1_1:29997269-29997288 None:intergenic 35.0%
! TGATGGATCACTTTGCATAA+TGG - chr1_1:29997277-29997296 Msa0017950:three_prime_UTR 35.0%
!!! TCTAGTTTTGGAGATGAAGT+TGG + chr1_1:29997545-29997564 None:intergenic 35.0%
AGGACATGAAAGAGAAACAA+TGG - chr1_1:29997613-29997632 Msa0017950:three_prime_UTR 35.0%
TGCTCCAAAGAATAATCTCT+AGG + chr1_1:29997830-29997849 None:intergenic 35.0%
GTTGTTGAAGCTAAAAAGAG+AGG - chr1_1:29998022-29998041 Msa0017950:intron 35.0%
TAAAAAGAGAGGACATGCTA+AGG - chr1_1:29998033-29998052 Msa0017950:intron 35.0%
! CTAATAGTTTTCCTATGAGC+AGG + chr1_1:29998073-29998092 Msa0017960:CDS 35.0%
CAAAGAACTTCTCAGTATAG+AGG - chr1_1:29998103-29998122 Msa0017950:intron 35.0%
TTTAGCAACGAGATCAAACT+AGG - chr1_1:29998270-29998289 Msa0017950:intron 35.0%
TTAGCAACGAGATCAAACTA+GGG - chr1_1:29998271-29998290 Msa0017950:intron 35.0%
AGATCAAACTAGGGTTGAAA+CGG - chr1_1:29998280-29998299 Msa0017950:intron 35.0%
TTGTCATTGTCATTGCATCT+GGG + chr1_1:29998408-29998427 Msa0017960:CDS 35.0%
ATTGTCATTGTCATTGCATC+TGG + chr1_1:29998409-29998428 Msa0017960:CDS 35.0%
TGGTTTAACTATGGTCGAAT+CGG + chr1_1:29998589-29998608 Msa0017960:intron 35.0%
CTTTCTCATCAGAATTCGAA+TGG + chr1_1:29998609-29998628 Msa0017960:intron 35.0%
ATAACAGTTGCAAGAAGGAA+GGG - chr1_1:29998766-29998785 Msa0017950:intron 35.0%
ATCTTGCTGCTCTCAAATAT+TGG - chr1_1:29999255-29999274 Msa0017950:intron 35.0%
TCTTGCTGCTCTCAAATATT+GGG - chr1_1:29999256-29999275 Msa0017950:intron 35.0%
GAGAAGTTTATATGCGTTGA+AGG + chr1_1:29999284-29999303 Msa0017960:CDS 35.0%
!! TCTTTGAGACAGTTGCAAAA+TGG - chr1_1:29999349-29999368 Msa0017950:intron 35.0%
GACAGTTGCAAAATGGTTAT+CGG - chr1_1:29999356-29999375 Msa0017950:intron 35.0%
!! AACTTGCTATTATTGGAGTG+AGG - chr1_1:29999591-29999610 Msa0017950:intron 35.0%
TCCCTAGAGACAAATAAGTT+GGG - chr1_1:29999686-29999705 Msa0017950:intron 35.0%
TCCCAACTTATTTGTCTCTA+GGG + chr1_1:29999690-29999709 Msa0017960:intron 35.0%
!! GTCTCGGTTTATTTTTCTCA+AGG - chr1_1:29999771-29999790 Msa0017950:intron 35.0%
! GATGATACTAAGCTTTTGGT+TGG - chr1_1:29999924-29999943 Msa0017950:intron 35.0%
! GAAAGAGTAGTGGTTTTTCA+AGG - chr1_1:29999953-29999972 Msa0017950:intron 35.0%
!!! AAGAGTAGTGGTTTTTCAAG+GGG - chr1_1:29999955-29999974 Msa0017950:intron 35.0%
TTAAGAAGATCCTTAGCACT+TGG - chr1_1:30000252-30000271 Msa0017950:intron 35.0%
ATTTGAATGACCAAGTGCTA+AGG + chr1_1:30000265-30000284 Msa0017960:intron 35.0%
ATTAAATTCAGGCACTCAAG+AGG - chr1_1:30000435-30000454 Msa0017950:intron 35.0%
CTAAATCAACTCTTGTGTCA+AGG + chr1_1:30000639-30000658 Msa0017960:CDS 35.0%
CAAAGGGTTACTATCTATCA+TGG - chr1_1:30000690-30000709 Msa0017950:intron 35.0%
! GTTTGCAGATGGAATTTTTG+GGG - chr1_1:30000902-30000921 Msa0017950:intron 35.0%
ACAACGTAAGCACATGTATT+TGG - chr1_1:30001113-30001132 Msa0017950:intron 35.0%
CAACGTAAGCACATGTATTT+GGG - chr1_1:30001114-30001133 Msa0017950:intron 35.0%
AACGTAAGCACATGTATTTG+GGG - chr1_1:30001115-30001134 Msa0017950:intron 35.0%
CAATGTACGTAAATGTTAGG+TGG + chr1_1:30001313-30001332 Msa0017960:three_prime_UTR 35.0%
TTAACGACCATCAACTTGAA+AGG + chr1_1:30001557-30001576 None:intergenic 35.0%
AGTCAAATATGTGTAGGACT+AGG + chr1_1:30001880-30001899 None:intergenic 35.0%
AAAGAATGTCCTTAGGGTAT+TGG + chr1_1:30002171-30002190 None:intergenic 35.0%
!!! CCATTTTTTGGTAATCTGCA+TGG + chr1_1:30002387-30002406 None:intergenic 35.0%
CCATGCAGATTACCAAAAAA+TGG - chr1_1:30002384-30002403 Msa0017950:intron 35.0%
AATGCAACCACAATCAAGTT+TGG + chr1_1:30002451-30002470 None:intergenic 35.0%
TTGATTGTGGTTGCATTTAG+AGG - chr1_1:30002454-30002473 Msa0017950:intron 35.0%
CATATTAACAGGGCATAGTT+TGG - chr1_1:30002702-30002721 Msa0017950:intron 35.0%
CCTTCTAACTGATCTAACAA+CGG + chr1_1:30002781-30002800 None:intergenic 35.0%
AGAGGGATTTGTCATCATAA+GGG + chr1_1:30002930-30002949 None:intergenic 35.0%
AAGAGGGATTTGTCATCATA+AGG + chr1_1:30002931-30002950 None:intergenic 35.0%
! ACTGAAGTGCTTAAAGAAGA+GGG + chr1_1:30002947-30002966 None:intergenic 35.0%
AAGCTGTTGAAAAACAGACA+AGG + chr1_1:30002970-30002989 None:intergenic 35.0%
!! TTTTTCAACAGCTTGTACCA+AGG - chr1_1:30002976-30002995 Msa0017950:intron 35.0%
! TTTTCAACAGCTTGTACCAA+GGG - chr1_1:30002977-30002996 Msa0017950:intron 35.0%
TATTGAAATCCAGATTCTGG+AGG - chr1_1:30003098-30003117 Msa0017950:intron 35.0%
! CAAACTGCGTTTAAGATCTT+TGG + chr1_1:30003165-30003184 None:intergenic 35.0%
CAAAGATCTTAAACGCAGTT+TGG - chr1_1:30003163-30003182 Msa0017950:intron 35.0%
! CTTGTTGGATTGATAATTCC+AGG - chr1_1:30003264-30003283 Msa0017950:intron 35.0%
GCAAAATCAGTATGTGATAG+GGG - chr1_1:30003607-30003626 Msa0017950:intron 35.0%
CAAAACCCATGGATAAGATT+CGG - chr1_1:30004158-30004177 Msa0017950:intron 35.0%
TACATCCGAATCTTATCCAT+GGG + chr1_1:30004166-30004185 None:intergenic 35.0%
TTACATCCGAATCTTATCCA+TGG + chr1_1:30004167-30004186 None:intergenic 35.0%
TAAGATTCGGATGTAAGAGA+AGG - chr1_1:30004171-30004190 Msa0017950:intron 35.0%
CAATTCATCTTACTAGGACA+AGG - chr1_1:30004409-30004428 Msa0017950:intron 35.0%
GAATGCTGTAGAAGCTTAAA+AGG - chr1_1:30004472-30004491 Msa0017950:intron 35.0%
! CTCACAAGGTTATGTCATTT+CGG + chr1_1:30004544-30004563 None:intergenic 35.0%
ACTGAAATTCGCTCAGAAAA+AGG + chr1_1:30004624-30004643 None:intergenic 35.0%
AAAGGGATTCTTAATGCATG+CGG - chr1_1:30004760-30004779 Msa0017950:intron 35.0%
TGGACTAATGTCATTACTGT+GGG + chr1_1:30004892-30004911 None:intergenic 35.0%
! ATGGACTAATGTCATTACTG+TGG + chr1_1:30004893-30004912 None:intergenic 35.0%
!! TAGTCCATAACTAGTCTTGT+CGG - chr1_1:30004905-30004924 Msa0017950:intron 35.0%
! TAAACCGACAAGACTAGTTA+TGG + chr1_1:30004912-30004931 None:intergenic 35.0%
!! GTCTTGTCGGTTTAAGATAA+TGG - chr1_1:30004918-30004937 Msa0017950:intron 35.0%
AGATGACCGAAATTGAACTT+AGG - chr1_1:30005015-30005034 Msa0017950:intron 35.0%
GATGACCGAAATTGAACTTA+GGG - chr1_1:30005016-30005035 Msa0017950:intron 35.0%
GAAATTGAACTTAGGGAAAG+AGG - chr1_1:30005023-30005042 Msa0017950:intron 35.0%
ATGTAGGAGCAATAATTGCT+TGG - chr1_1:30005119-30005138 Msa0017950:intron 35.0%
GTAAACAAAGAACCACTTGA+AGG + chr1_1:30005184-30005203 None:intergenic 35.0%
! CTTTTGCAAATTTTCCCATG+CGG - chr1_1:30005237-30005256 Msa0017950:intron 35.0%
!! CAGTAAATTTTGTTTGTCCC+AGG + chr1_1:30005288-30005307 None:intergenic 35.0%
CTGGGACAAACAAAATTTAC+TGG - chr1_1:30005286-30005305 Msa0017950:intron 35.0%
! CTAGGTTGAATTGAATAGGA+TGG - chr1_1:30005413-30005432 Msa0017950:intron 35.0%
TCAGTACCATATTTGAAAGG+TGG - chr1_1:30005440-30005459 Msa0017950:intron 35.0%
GGGAAAACTTCACTTCTTAT+TGG - chr1_1:30005646-30005665 Msa0017950:CDS 35.0%
AGAGAAAGAAGTCCTCATAT+TGG - chr1_1:30006011-30006030 Msa0017950:intron 35.0%
GAGAAAGAAGTCCTCATATT+GGG - chr1_1:30006012-30006031 Msa0017950:intron 35.0%
CAAACTTCTCCTCTGTAAAT+TGG - chr1_1:30006130-30006149 Msa0017950:intron 35.0%
ATATCATGTACGCAGAAGTA+TGG - chr1_1:30006181-30006200 Msa0017950:intron 35.0%
CAGAGTCTTTGGATGAAAAT+TGG + chr1_1:30006359-30006378 None:intergenic 35.0%
AAGATTAGCATAACAACCTC+GGG - chr1_1:30006619-30006638 Msa0017950:intron 35.0%
! GATGGGTTTACAAATAGTTC+TGG + chr1_1:30006749-30006768 None:intergenic 35.0%
CTGCGTTGTGTTTAAGTAAT+GGG + chr1_1:30007015-30007034 None:intergenic 35.0%
ACTGCGTTGTGTTTAAGTAA+TGG + chr1_1:30007016-30007035 None:intergenic 35.0%
AATTATCGTCATTGTCAAGG+TGG + chr1_1:30007112-30007131 None:intergenic 35.0%
CCTTGACAATGACGATAATT+CGG - chr1_1:30007112-30007131 Msa0017950:CDS 35.0%
TATGGTTCAGACTAGGAAAT+CGG + chr1_1:30007185-30007204 None:intergenic 35.0%
AATGCTAATGCAACTGGAAT+TGG + chr1_1:30007250-30007269 None:intergenic 35.0%
! TGTATTTGACTCTTGTTGTG+GGG + chr1_1:30007738-30007757 None:intergenic 35.0%
CATGTATTTGACTCTTGTTG+TGG + chr1_1:30007740-30007759 None:intergenic 35.0%
ATGTCCCTACAAGATATCAT+TGG - chr1_1:30007794-30007813 Msa0017950:intron 35.0%
TGTCCCTACAAGATATCATT+GGG - chr1_1:30007795-30007814 Msa0017950:intron 35.0%
CAATCCCAATGATATCTTGT+AGG + chr1_1:30007802-30007821 None:intergenic 35.0%
! ATCATTGGGATTGATTCAGT+AGG - chr1_1:30007809-30007828 Msa0017950:intron 35.0%
ATGAGTCCTTATCATCTTGT+TGG + chr1_1:30007867-30007886 None:intergenic 35.0%
!! TGACTAGTTTAAGTAGCTCA+AGG - chr1_1:30007909-30007928 Msa0017950:CDS 35.0%
!! GACTAGTTTAAGTAGCTCAA+GGG - chr1_1:30007910-30007929 Msa0017950:CDS 35.0%
!!! GGTTTTGGAAAAAGCATTGT+AGG + chr1_1:30007965-30007984 None:intergenic 35.0%
! TTTTTCCAAAACCTCCAACA+GGG - chr1_1:30007972-30007991 Msa0017950:CDS 35.0%
! TATCTCAATGTCTCCTTTTC+CGG - chr1_1:30008054-30008073 Msa0017950:CDS 35.0%
AGTGATGCTTAGTGCATATT+TGG - chr1_1:30008091-30008110 Msa0017950:CDS 35.0%
GACGAGTATGAACAAAATCA+CGG - chr1_1:30008117-30008136 Msa0017950:CDS 35.0%
CAAATTTGTGCTCAAGCAAT+AGG - chr1_1:30008157-30008176 Msa0017950:CDS 35.0%
GTCATCTTAATGTATGCTAG+TGG - chr1_1:30008318-30008337 Msa0017950:five_prime_UTR 35.0%
CCAAAAAGCTATGATTGGAA+AGG + chr1_1:30008351-30008370 None:intergenic 35.0%
! CCTTTCCAATCATAGCTTTT+TGG - chr1_1:30008348-30008367 Msa0017950:five_prime_UTR 35.0%
AAGAGCCAAAAAGCTATGAT+TGG + chr1_1:30008356-30008375 None:intergenic 35.0%
!! TTGGCTCTTTAATTTGTGGA+TGG - chr1_1:30008367-30008386 Msa0017950:five_prime_UTR 35.0%
! AGCTCCATTTTCATGTGGTA+GGG + chr1_1:29997032-29997051 None:intergenic 40.0%
! AAGCTCCATTTTCATGTGGT+AGG + chr1_1:29997033-29997052 None:intergenic 40.0%
! CTAGGATGATGATGTTGAGA+AGG + chr1_1:29997068-29997087 None:intergenic 40.0%
GTTTGAAGGAACAACAGAAG+AGG + chr1_1:29997141-29997160 None:intergenic 40.0%
CTCACTAGATCACAATCTCA+AGG - chr1_1:29997308-29997327 Msa0017950:three_prime_UTR 40.0%
!!! CCAAGGAAGTCTTCTAGTTT+TGG + chr1_1:29997557-29997576 None:intergenic 40.0%
CCAAAACTAGAAGACTTCCT+TGG - chr1_1:29997554-29997573 Msa0017950:three_prime_UTR 40.0%
AAACTAGAAGACTTCCTTGG+TGG - chr1_1:29997557-29997576 Msa0017950:three_prime_UTR 40.0%
GGAAGAAGAAGAACAAACCA+AGG - chr1_1:29997769-29997788 Msa0017950:intron 40.0%
GGCTCCTAGAGATTATTCTT+TGG - chr1_1:29997823-29997842 Msa0017950:intron 40.0%
!! GTTGGTAGTATTGGAGATGA+TGG - chr1_1:29997875-29997894 Msa0017950:intron 40.0%
! TATTGGAGATGATGGTTCTG+TGG - chr1_1:29997883-29997902 Msa0017950:intron 40.0%
! ATTGGAGATGATGGTTCTGT+GGG - chr1_1:29997884-29997903 Msa0017950:intron 40.0%
CCAGAAGCTGAAATCTGATT+TGG + chr1_1:29997989-29998008 Msa0017960:CDS 40.0%
CCAAATCAGATTTCAGCTTC+TGG - chr1_1:29997986-29998005 Msa0017950:intron 40.0%
CTCAGTATAGAGGAGTTACA+AGG - chr1_1:29998113-29998132 Msa0017950:intron 40.0%
TCAGCTAGCCATATCAACTT+TGG + chr1_1:29998240-29998259 Msa0017960:CDS 40.0%
! AGTTGATATGGCTAGCTGAT+TGG - chr1_1:29998241-29998260 Msa0017950:intron 40.0%
AAGGCCCGATATAAACACTA+AGG + chr1_1:29998311-29998330 Msa0017960:CDS 40.0%
GTGACATTAGATGTGTTGTG+TGG - chr1_1:29998382-29998401 Msa0017950:intron 40.0%
GCAATGACAATGACAATGTG+TGG - chr1_1:29998412-29998431 Msa0017950:intron 40.0%
ATGGCACGGTGACATTAATA+AGG - chr1_1:29998445-29998464 Msa0017950:intron 40.0%
TGTTGTCTATCAGGCATAGA+TGG - chr1_1:29998715-29998734 Msa0017950:intron 40.0%
ATGGGATAACAGTTGCAAGA+AGG - chr1_1:29998761-29998780 Msa0017950:intron 40.0%
GATAACAGTTGCAAGAAGGA+AGG - chr1_1:29998765-29998784 Msa0017950:intron 40.0%
CAAACAAGGAAAGGAAGACA+AGG - chr1_1:29998789-29998808 Msa0017950:intron 40.0%
CATGTCACATGTTCACATTG+TGG - chr1_1:29999046-29999065 Msa0017950:intron 40.0%
ATATGGAAGAGAAAGCTGCA+AGG - chr1_1:29999225-29999244 Msa0017950:intron 40.0%
TATGGAAGAGAAAGCTGCAA+GGG - chr1_1:29999226-29999245 Msa0017950:intron 40.0%
CTTGCTGCTCTCAAATATTG+GGG - chr1_1:29999257-29999276 Msa0017950:intron 40.0%
! TTTTTCTCAAGGACCACAGT+GGG + chr1_1:29999618-29999637 Msa0017960:intron 40.0%
!!! TTTTTTCTCAAGGACCACAG+TGG + chr1_1:29999619-29999638 Msa0017960:intron 40.0%
GTCCCTAGAGACAAATAAGT+TGG - chr1_1:29999685-29999704 Msa0017950:intron 40.0%
GTCCCAACTTATTTGTCTCT+AGG + chr1_1:29999691-29999710 Msa0017960:intron 40.0%
!! TTGGTTTGCAGAAAGAGTAG+TGG - chr1_1:29999943-29999962 Msa0017950:intron 40.0%
GGAAATAGGGACCTTTATCT+TGG - chr1_1:30000138-30000157 Msa0017950:intron 40.0%
!!! TTTTGGGGCTATACAGCTTT+TGG - chr1_1:30000917-30000936 Msa0017950:intron 40.0%
AGGTGGGAAACCAATTGTTA+GGG + chr1_1:30001296-30001315 Msa0017960:three_prime_UTR 40.0%
TAGGTGGGAAACCAATTGTT+AGG + chr1_1:30001297-30001316 Msa0017960:three_prime_UTR 40.0%
TCCTCTTTACCAATACCCTA+AGG - chr1_1:30002159-30002178 Msa0017950:intron 40.0%
!! TCCTTAGGGTATTGGTAAAG+AGG + chr1_1:30002163-30002182 None:intergenic 40.0%
! AATCAAGTTTGGCTCAGACT+TGG + chr1_1:30002440-30002459 None:intergenic 40.0%
AAACAGACGTTGATATCTCC+TGG - chr1_1:30002506-30002525 Msa0017950:intron 40.0%
!! GCTTTGGGACTATTAGAGAA+CGG - chr1_1:30002574-30002593 Msa0017950:intron 40.0%
CGTAGTAAGCATATTGATGC+TGG + chr1_1:30002630-30002649 None:intergenic 40.0%
GCAACTGAGAGAAATGTTGA+AGG - chr1_1:30002660-30002679 Msa0017950:intron 40.0%
CCGTTGTTAGATCAGTTAGA+AGG - chr1_1:30002778-30002797 Msa0017950:intron 40.0%
ACTCCAATGATATGGTTCCT+AGG - chr1_1:30002902-30002921 Msa0017950:intron 40.0%
GATCCTAGGAACCATATCAT+TGG + chr1_1:30002908-30002927 None:intergenic 40.0%
TTGTCATCATAAGGGATCCT+AGG + chr1_1:30002922-30002941 None:intergenic 40.0%
! GACTGAAGTGCTTAAAGAAG+AGG + chr1_1:30002948-30002967 None:intergenic 40.0%
! ATTGGTTCATGGCATTGTTC+AGG - chr1_1:30003241-30003260 Msa0017950:intron 40.0%
TAATCTGCAGTGAAATGAGC+TGG + chr1_1:30003294-30003313 None:intergenic 40.0%
TTTGTCTAAGAATCCCAGTC+GGG + chr1_1:30003328-30003347 None:intergenic 40.0%
GTTTGTCTAAGAATCCCAGT+CGG + chr1_1:30003329-30003348 None:intergenic 40.0%
CCTTGGAAATTAGAAGCTCT+AGG + chr1_1:30003353-30003372 None:intergenic 40.0%
CCTAGAGCTTCTAATTTCCA+AGG - chr1_1:30003350-30003369 Msa0017950:intron 40.0%
GCATAGACATTAGTCATCCT+TGG + chr1_1:30003370-30003389 None:intergenic 40.0%
!! AAATGTGTCGATTCGGTTGA+AGG + chr1_1:30003401-30003420 None:intergenic 40.0%
!! GGAACAGAAATGTGTCGATT+CGG + chr1_1:30003408-30003427 None:intergenic 40.0%
ATATAAGGATCACTGGCACT+GGG + chr1_1:30003545-30003564 None:intergenic 40.0%
TATATAAGGATCACTGGCAC+TGG + chr1_1:30003546-30003565 None:intergenic 40.0%
! AAGCATGCGTAACTTTGAGA+TGG - chr1_1:30003675-30003694 Msa0017950:intron 40.0%
!! TGCGTAACTTTGAGATGGAA+AGG - chr1_1:30003680-30003699 Msa0017950:intron 40.0%
TCTTTGAATACGAACTCCCA+AGG - chr1_1:30003857-30003876 Msa0017950:intron 40.0%
! ACAAGGCACTTAGATTCTAC+CGG - chr1_1:30003888-30003907 Msa0017950:intron 40.0%
TGAAGTACAAGCACTTTAGC+CGG + chr1_1:30003910-30003929 None:intergenic 40.0%
!! TCCTTCTGATTTCTGAAACC+TGG - chr1_1:30004023-30004042 Msa0017950:intron 40.0%
ACCAGGTTTCAGAAATCAGA+AGG + chr1_1:30004027-30004046 None:intergenic 40.0%
! TAAGAGAAGGAATCTGAAGC+AGG - chr1_1:30004184-30004203 Msa0017950:intron 40.0%
! AAGGAATCTGAAGCAGGAAA+TGG - chr1_1:30004190-30004209 Msa0017950:intron 40.0%
! AGGAATCTGAAGCAGGAAAT+GGG - chr1_1:30004191-30004210 Msa0017950:intron 40.0%
CTTTCTGTTCAAGTGAAGCT+AGG + chr1_1:30004452-30004471 None:intergenic 40.0%
CTAGCTTCACTTGAACAGAA+AGG - chr1_1:30004450-30004469 Msa0017950:intron 40.0%
! AGAAGCTTAAAAGGCATGAC+AGG - chr1_1:30004481-30004500 Msa0017950:intron 40.0%
CATAACCTTGTGAGAAGTTC+TGG - chr1_1:30004550-30004569 Msa0017950:intron 40.0%
AGAAAAAGGCTCAGGAAATG+AGG + chr1_1:30004610-30004629 None:intergenic 40.0%
! ATTACTGTGGGCTGTCTAAT+AGG + chr1_1:30004880-30004899 None:intergenic 40.0%
GATGATCACTTGAGCTAGTA+GGG - chr1_1:30005141-30005160 Msa0017950:intron 40.0%
AGCAGCAATACAGAAACTAG+AGG + chr1_1:30005206-30005225 None:intergenic 40.0%
CGCATGGGAAAATTTGCAAA+AGG + chr1_1:30005239-30005258 None:intergenic 40.0%
! ATTTTCCCATGCGGTGATTT+TGG - chr1_1:30005246-30005265 Msa0017950:intron 40.0%
GTTCAGAAAATGTTGACAGC+TGG + chr1_1:30005849-30005868 None:intergenic 40.0%
TGAACCTCTACCAGTGAATA+GGG - chr1_1:30005864-30005883 Msa0017950:intron 40.0%
ATGAACGTGTAACCATGACA+AGG + chr1_1:30005909-30005928 None:intergenic 40.0%
GATACTCTGCAAATCTGTGA+CGG - chr1_1:30005966-30005985 Msa0017950:CDS 40.0%
ATACTCTGCAAATCTGTGAC+GGG - chr1_1:30005967-30005986 Msa0017950:CDS 40.0%
TTTGATGCTTTCAAGGATGC+GGG + chr1_1:30006114-30006133 None:intergenic 40.0%
GTTTGATGCTTTCAAGGATG+CGG + chr1_1:30006115-30006134 None:intergenic 40.0%
GGAGAAGTTTGATGCTTTCA+AGG + chr1_1:30006121-30006140 None:intergenic 40.0%
! TGTGATGTGGATTGAACTCT+TGG + chr1_1:30006475-30006494 None:intergenic 40.0%
!! ACAAATAGTTCTGGTGGCAA+TGG + chr1_1:30006740-30006759 None:intergenic 40.0%
!! GGGTTTACAAATAGTTCTGG+TGG + chr1_1:30006746-30006765 None:intergenic 40.0%
ATTTGTAAACCCATCAGCTG+AGG - chr1_1:30006754-30006773 Msa0017950:intron 40.0%
GCATTAACAGCAGCAGAAAA+AGG - chr1_1:30006776-30006795 Msa0017950:intron 40.0%
AACGAATAATACGCAACACC+AGG - chr1_1:30006854-30006873 Msa0017950:intron 40.0%
!! TGGATTTTGAGTCCTGTTTC+GGG + chr1_1:30006956-30006975 None:intergenic 40.0%
!! GTGGATTTTGAGTCCTGTTT+CGG + chr1_1:30006957-30006976 None:intergenic 40.0%
GTGTTGCAATGCAAAAAGGT+TGG + chr1_1:30007090-30007109 None:intergenic 40.0%
CCGAATTATCGTCATTGTCA+AGG + chr1_1:30007115-30007134 None:intergenic 40.0%
ATGGTTCAGACTAGGAAATC+GGG + chr1_1:30007184-30007203 None:intergenic 40.0%
! AGAAGAGTATGGTTCAGACT+AGG + chr1_1:30007192-30007211 None:intergenic 40.0%
TGGAGCTATGAAGAAGAGTA+TGG + chr1_1:30007203-30007222 None:intergenic 40.0%
TTCATAGCTCCAACTAATCG+AGG - chr1_1:30007211-30007230 Msa0017950:CDS 40.0%
TCATAGCTCCAACTAATCGA+GGG - chr1_1:30007212-30007231 Msa0017950:CDS 40.0%
AATGCAACTGGAATTGGAAC+TGG + chr1_1:30007244-30007263 None:intergenic 40.0%
CTGAACAATGCTAATGCAAC+TGG + chr1_1:30007256-30007275 None:intergenic 40.0%
TTGTTCAGATCTAACGAAGC+AGG - chr1_1:30007268-30007287 Msa0017950:CDS 40.0%
! ATTGGGATTGATTCAGTAGG+AGG - chr1_1:30007812-30007831 Msa0017950:intron 40.0%
! CTTTTTCCAAAACCTCCAAC+AGG - chr1_1:30007971-30007990 Msa0017950:CDS 40.0%
! AAAGTTTTTGACCCTGTTGG+AGG + chr1_1:30007986-30008005 None:intergenic 40.0%
! CTCAAAGTTTTTGACCCTGT+TGG + chr1_1:30007989-30008008 None:intergenic 40.0%
AGTCCTATTGCTACTAATGC+TGG - chr1_1:30008007-30008026 Msa0017950:CDS 40.0%
GATCCAGCATTAGTAGCAAT+AGG + chr1_1:30008013-30008032 None:intergenic 40.0%
TTGCTACTAATGCTGGATCT+TGG - chr1_1:30008014-30008033 Msa0017950:CDS 40.0%
ATTGAGATAGCACTAGCTGA+GGG + chr1_1:30008043-30008062 None:intergenic 40.0%
CATGGAATAGTTGTTAGGGT+GGG - chr1_1:30008201-30008220 Msa0017950:CDS 40.0%
TTAGGGTGGGAAGAAAAGAT+GGG - chr1_1:30008214-30008233 Msa0017950:CDS 40.0%
!! GGATTAGTTAATTGGGGTGT+AGG - chr1_1:30008283-30008302 Msa0017950:five_prime_UTR 40.0%
!! GAAGGGAAAGTGTTATTAGG+AGG - chr1_1:30008403-30008422 Msa0017950:five_prime_UTR 40.0%
TTGTGCTCACAAGTGAAGGA+AGG - chr1_1:29996729-29996748 Msa0017950:three_prime_UTR 45.0%
CTCACCCTACCACATGAAAA+TGG - chr1_1:29997025-29997044 Msa0017950:three_prime_UTR 45.0%
GAAGGAACAACAGAAGAGGA+AGG + chr1_1:29997137-29997156 None:intergenic 45.0%
!! TTCCTTGGTGGTGCAACTAT+GGG - chr1_1:29997569-29997588 Msa0017950:three_prime_UTR 45.0%
GGTTCTGTGGGAACAGTTAA+TGG - chr1_1:29997896-29997915 Msa0017950:intron 45.0%
GTGGGAACAGTTAATGGTTG+TGG - chr1_1:29997902-29997921 Msa0017950:intron 45.0%
CTAAGCCTTTCTATGAGTCC+TGG - chr1_1:29997938-29997957 Msa0017950:intron 45.0%
GAGAACCAGGACTCATAGAA+AGG + chr1_1:29997946-29997965 Msa0017960:five_prime_UTR 45.0%
ACACAGCTTGATTGAGAACC+AGG + chr1_1:29997959-29997978 Msa0017960:five_prime_UTR 45.0%
AAGAGAGGACATGCTAAGGT+TGG - chr1_1:29998037-29998056 Msa0017950:intron 45.0%
TGTTTATATCGGGCCTTACC+TGG - chr1_1:29998314-29998333 Msa0017950:intron 45.0%
TCTATCAGGCATAGATGGAC+CGG - chr1_1:29998720-29998739 Msa0017950:intron 45.0%
AAGGAAGGGCAAACAAGGAA+AGG - chr1_1:29998780-29998799 Msa0017950:intron 45.0%
CGGTATGTTTCACGACATAG+TGG - chr1_1:29999303-29999322 Msa0017950:intron 45.0%
!! AGGGGTGCTTCAATGTATAG+AGG - chr1_1:29999973-29999992 Msa0017950:intron 45.0%
! GGGGTGCTTCAATGTATAGA+GGG - chr1_1:29999974-29999993 Msa0017950:intron 45.0%
GGGTGCTTCAATGTATAGAG+GGG - chr1_1:29999975-29999994 Msa0017950:intron 45.0%
CAATGTATAGAGGGGTGACA+AGG - chr1_1:29999983-30000002 Msa0017950:intron 45.0%
TAGGCAGAGTTGCAGGAAAT+AGG - chr1_1:30000124-30000143 Msa0017950:intron 45.0%
AGGCAGAGTTGCAGGAAATA+GGG - chr1_1:30000125-30000144 Msa0017950:intron 45.0%
! TGTTCGTGTCTGTCTCGTTT+TGG - chr1_1:30000366-30000385 Msa0017950:intron 45.0%
GATAACACCGGAAAAGTCGT+CGG - chr1_1:30000588-30000607 Msa0017950:intron 45.0%
!! GGGCTATACAGCTTTTGGAA+CGG - chr1_1:30000922-30000941 Msa0017950:intron 45.0%
GTGGAATCTGCCCTAACAAT+TGG - chr1_1:30001283-30001302 Msa0017950:intron 45.0%
GTCTGAGCCAAACTTGATTG+TGG - chr1_1:30002441-30002460 Msa0017950:intron 45.0%
TTCCATTGCACAGCGTCAAA+TGG + chr1_1:30002487-30002506 None:intergenic 45.0%
TGGTATGACCTACCAAACGT+GGG - chr1_1:30002526-30002545 Msa0017950:intron 45.0%
!! TGGTGGGTTCATGAAAGCTT+TGG - chr1_1:30002558-30002577 Msa0017950:intron 45.0%
! GGTGGGTTCATGAAAGCTTT+GGG - chr1_1:30002559-30002578 Msa0017950:intron 45.0%
TTGGGACTATTAGAGAACGG+TGG - chr1_1:30002577-30002596 Msa0017950:intron 45.0%
GACTATTAGAGAACGGTGGA+TGG - chr1_1:30002581-30002600 Msa0017950:intron 45.0%
TTAACAGGGCATAGTTTGGG+TGG - chr1_1:30002706-30002725 Msa0017950:intron 45.0%
ACATTTGGGCAACCAAGAGT+TGG - chr1_1:30002808-30002827 Msa0017950:intron 45.0%
AACTTCTCGTCTCCAACTCT+TGG + chr1_1:30002823-30002842 None:intergenic 45.0%
AGAGTTGGAGACGAGAAGTT+TGG - chr1_1:30002823-30002842 Msa0017950:intron 45.0%
GTAGATTTCATACCTGCCCT+TGG + chr1_1:30002996-30003015 None:intergenic 45.0%
! TGAAATCCAGATTCTGGAGG+AGG - chr1_1:30003101-30003120 Msa0017950:intron 45.0%
GATCTTAAACGCAGTTTGGG+AGG - chr1_1:30003167-30003186 Msa0017950:intron 45.0%
ATGGCATTGTTCAGGCTTGT+TGG - chr1_1:30003249-30003268 Msa0017950:intron 45.0%
TTATGTCAATGCTACCCGAC+TGG - chr1_1:30003311-30003330 Msa0017950:intron 45.0%
TATGTCAATGCTACCCGACT+GGG - chr1_1:30003312-30003331 Msa0017950:intron 45.0%
AATACGAACTCCCAAGGATG+AGG - chr1_1:30003863-30003882 Msa0017950:intron 45.0%
CTTGAGGCTATCAAAACCCA+TGG - chr1_1:30004147-30004166 Msa0017950:intron 45.0%
! GGAATCTGAAGCAGGAAATG+GGG - chr1_1:30004192-30004211 Msa0017950:intron 45.0%
AACCACTCAAAGAACCCATC+TGG - chr1_1:30004510-30004529 Msa0017950:intron 45.0%
! GTTATGTCATTTCGGAGAGC+CGG + chr1_1:30004536-30004555 None:intergenic 45.0%
AGTTGCCAGAACTTCTCACA+AGG + chr1_1:30004558-30004577 None:intergenic 45.0%
ATTCGCTCAGAAAAAGGCTC+AGG + chr1_1:30004618-30004637 None:intergenic 45.0%
AAAGAAGCGAGCATCTTCCA+TGG + chr1_1:30004663-30004682 None:intergenic 45.0%
GGATGATCACTTGAGCTAGT+AGG - chr1_1:30005140-30005159 Msa0017950:intron 45.0%
TGTTTGTCCCAGGGCTAAAA+GGG + chr1_1:30005278-30005297 None:intergenic 45.0%
TTGTTTGTCCCAGGGCTAAA+AGG + chr1_1:30005279-30005298 None:intergenic 45.0%
TCAAGGTAGCTCATGGCATT+TGG - chr1_1:30005586-30005605 Msa0017950:intron 45.0%
CAGCACTCGATCTTCATCTT+GGG + chr1_1:30005812-30005831 None:intergenic 45.0%
CTGAACCTCTACCAGTGAAT+AGG - chr1_1:30005863-30005882 Msa0017950:intron 45.0%
AAACACAAGGCCCTATTCAC+TGG + chr1_1:30005877-30005896 None:intergenic 45.0%
! GAATAGGGCCTTGTGTTTCT+TGG - chr1_1:30005879-30005898 Msa0017950:intron 45.0%
AAGGTGGTCCAAGAAACACA+AGG + chr1_1:30005890-30005909 None:intergenic 45.0%
TTTCTTGGACCACCTTGTCA+TGG - chr1_1:30005894-30005913 Msa0017950:intron 45.0%
AACGTGTAACCATGACAAGG+TGG + chr1_1:30005906-30005925 None:intergenic 45.0%
AATGGATATCAGGGATGTGC+AGG + chr1_1:30005935-30005954 None:intergenic 45.0%
AGAAGTCCTCATATTGGGAG+AGG - chr1_1:30006017-30006036 Msa0017950:intron 45.0%
!! TGCTGTTTCAAGAAGGGACA+TGG + chr1_1:30006076-30006095 None:intergenic 45.0%
ATGTCCCTTCTTGAAACAGC+AGG - chr1_1:30006075-30006094 Msa0017950:intron 45.0%
TGTCCCTTCTTGAAACAGCA+GGG - chr1_1:30006076-30006095 Msa0017950:intron 45.0%
!! ATCCCCTGCTGTTTCAAGAA+GGG + chr1_1:30006082-30006101 None:intergenic 45.0%
!! TATCCCCTGCTGTTTCAAGA+AGG + chr1_1:30006083-30006102 None:intergenic 45.0%
TGAAACAGCAGGGGATACAT+TGG - chr1_1:30006086-30006105 Msa0017950:intron 45.0%
!! ACGTTGGCTCCAATTTACAG+AGG + chr1_1:30006142-30006161 None:intergenic 45.0%
TTAGCATAACAACCTCGGGA+AGG - chr1_1:30006623-30006642 Msa0017950:intron 45.0%
!! AATAGTTCTGGTGGCAATGG+TGG + chr1_1:30006737-30006756 None:intergenic 45.0%
CTGTTAATGCCTCAGCTGAT+GGG + chr1_1:30006766-30006785 None:intergenic 45.0%
!!! GCAGGTCACTTTTTTGATGG+AGG + chr1_1:30006824-30006843 None:intergenic 45.0%
!!! CCTGCAGGTCACTTTTTTGA+TGG + chr1_1:30006827-30006846 None:intergenic 45.0%
CCATCAAAAAAGTGACCTGC+AGG - chr1_1:30006824-30006843 Msa0017950:intron 45.0%
TATTCGTTGTATTCGCCTGC+AGG + chr1_1:30006842-30006861 None:intergenic 45.0%
GAATAATACGCAACACCAGG+TGG - chr1_1:30006857-30006876 Msa0017950:intron 45.0%
!! ATTTTGAGTCCTGTTTCGGG+GGG + chr1_1:30006953-30006972 None:intergenic 45.0%
!! GATTTTGAGTCCTGTTTCGG+GGG + chr1_1:30006954-30006973 None:intergenic 45.0%
!! GGATTTTGAGTCCTGTTTCG+GGG + chr1_1:30006955-30006974 None:intergenic 45.0%
TCCGCATCTTCCCATTTAGA+CGG - chr1_1:30006980-30006999 Msa0017950:intron 45.0%
GAGAACGTTGCCGTCTAAAT+GGG + chr1_1:30006993-30007012 None:intergenic 45.0%
! CACCATTACCAACTTGCTTC+CGG - chr1_1:30007038-30007057 Msa0017950:intron 45.0%
TTCTGAGCGAGTTGTAAGTG+GGG + chr1_1:30007065-30007084 None:intergenic 45.0%
! GTTCTGAGCGAGTTGTAAGT+GGG + chr1_1:30007066-30007085 None:intergenic 45.0%
!! AGTTCTGAGCGAGTTGTAAG+TGG + chr1_1:30007067-30007086 None:intergenic 45.0%
!! GGTGGTGTTGCAATGCAAAA+AGG + chr1_1:30007094-30007113 None:intergenic 45.0%
TGACGATAATTCGGAGTTCC+AGG - chr1_1:30007121-30007140 Msa0017950:CDS 45.0%
TAATTCGGAGTTCCAGGACT+CGG - chr1_1:30007127-30007146 Msa0017950:CDS 45.0%
TCAGACTAGGAAATCGGGAA+CGG + chr1_1:30007179-30007198 None:intergenic 45.0%
CATAGCTCCAACTAATCGAG+GGG - chr1_1:30007213-30007232 Msa0017950:CDS 45.0%
CAAATTCCGTGGCCTAAATG+CGG - chr1_1:30007499-30007518 Msa0017950:CDS 45.0%
CGAAGTTTGTGACCGCATTT+AGG + chr1_1:30007514-30007533 None:intergenic 45.0%
AGGAGGATCTAGCCAAGTTA+TGG - chr1_1:30007829-30007848 Msa0017950:intron 45.0%
! AGCCCTGACAACAAAAGTAC+TGG - chr1_1:30007938-30007957 Msa0017950:CDS 45.0%
!! GGCCAGTACTTTTGTTGTCA+GGG + chr1_1:30007943-30007962 None:intergenic 45.0%
! TTTGACCCTGTTGGAGGTTT+TGG + chr1_1:30007980-30007999 None:intergenic 45.0%
CATTGAGATAGCACTAGCTG+AGG + chr1_1:30008044-30008063 None:intergenic 45.0%
TGTGCTCAAGCAATAGGAGA+AGG - chr1_1:30008163-30008182 Msa0017950:CDS 45.0%
GCATGGAATAGTTGTTAGGG+TGG - chr1_1:30008200-30008219 Msa0017950:CDS 45.0%
GTTAGGGTGGGAAGAAAAGA+TGG - chr1_1:30008213-30008232 Msa0017950:CDS 45.0%
!!! TTTTTTTTAAAAAAATAATC+GGG + chr1_1:29999414-29999433 Msa0017960:intron 5.0%
!! TTTAATTACATTTATTATAA+TGG - chr1_1:30000335-30000354 Msa0017950:intron 5.0%
!! AAAAAAATTAAACTTATTAT+AGG + chr1_1:30001041-30001060 Msa0017960:intron 5.0%
TGCTCACAAGTGAAGGAAGG+AGG - chr1_1:29996732-29996751 Msa0017950:three_prime_UTR 50.0%
!! CTTCCTTGGTGGTGCAACTA+TGG - chr1_1:29997568-29997587 Msa0017950:three_prime_UTR 50.0%
TTCCCATAGTTGCACCACCA+AGG + chr1_1:29997574-29997593 None:intergenic 50.0%
GACAGAAGCAACCTGCTCAT+AGG - chr1_1:29998059-29998078 Msa0017950:intron 50.0%
GTATTTCCCTTCGCCAGGTA+AGG + chr1_1:29998330-29998349 Msa0017960:CDS 50.0%
CACAAGTATTTCCCTTCGCC+AGG + chr1_1:29998335-29998354 Msa0017960:CDS 50.0%
AATGTGTGGCCCAGATGCAA+TGG - chr1_1:29998426-29998445 Msa0017950:intron 50.0%
GCAAGAAGGAAGGGCAAACA+AGG - chr1_1:29998775-29998794 Msa0017950:intron 50.0%
TTGCTTGCCATCTACCATGC+TGG + chr1_1:30000101-30000120 Msa0017960:intron 50.0%
AGCATGGTAGATGGCAAGCA+AGG - chr1_1:30000100-30000119 Msa0017950:intron 50.0%
GGTAGATGGCAAGCAAGGAT+AGG - chr1_1:30000105-30000124 Msa0017950:intron 50.0%
TTCAGGCACTCAAGAGGAAG+CGG - chr1_1:30000441-30000460 Msa0017950:intron 50.0%
CTCCATTTGACGCTGTGCAA+TGG - chr1_1:30002482-30002501 Msa0017950:intron 50.0%
CACGTTTGGTAGGTCATACC+AGG + chr1_1:30002527-30002546 None:intergenic 50.0%
CTGGTATGACCTACCAAACG+TGG - chr1_1:30002525-30002544 Msa0017950:intron 50.0%
GCATCTTACCCACGTTTGGT+AGG + chr1_1:30002537-30002556 None:intergenic 50.0%
CCATGCATCTTACCCACGTT+TGG + chr1_1:30002541-30002560 None:intergenic 50.0%
CCAAACGTGGGTAAGATGCA+TGG - chr1_1:30002538-30002557 Msa0017950:intron 50.0%
AACGTGGGTAAGATGCATGG+TGG - chr1_1:30002541-30002560 Msa0017950:intron 50.0%
ACGTGGGTAAGATGCATGGT+GGG - chr1_1:30002542-30002561 Msa0017950:intron 50.0%
GCATAGTTTGGGTGGAGCAT+TGG - chr1_1:30002714-30002733 Msa0017950:intron 50.0%
GCAGTTTGGGAGGTGATTAG+AGG - chr1_1:30003177-30003196 Msa0017950:intron 50.0%
GTGAAATGAGCTGGTAGTCC+TGG + chr1_1:30003285-30003304 None:intergenic 50.0%
TGCCTTGTAGCCTCATCCTT+GGG + chr1_1:30003876-30003895 None:intergenic 50.0%
ACTCAAAGAACCCATCTGGC+CGG - chr1_1:30004514-30004533 Msa0017950:intron 50.0%
TTCTGGCAACTTGATGAGCC+TGG - chr1_1:30004567-30004586 Msa0017950:intron 50.0%
GAGTTCAGTTTCAGTCGACC+AGG + chr1_1:30004588-30004607 None:intergenic 50.0%
GGAAGCCAAAATCACCGCAT+GGG + chr1_1:30005254-30005273 None:intergenic 50.0%
AGGAAGCCAAAATCACCGCA+TGG + chr1_1:30005255-30005274 None:intergenic 50.0%
TGGTTAAGAGCAGAGCGAGA+AGG - chr1_1:30005606-30005625 Msa0017950:intron 50.0%
GGTTAAGAGCAGAGCGAGAA+GGG - chr1_1:30005607-30005626 Msa0017950:intron 50.0%
GTTAAGAGCAGAGCGAGAAG+GGG - chr1_1:30005608-30005627 Msa0017950:intron 50.0%
TTAAGAGCAGAGCGAGAAGG+GGG - chr1_1:30005609-30005628 Msa0017950:intron 50.0%
! AAGGGGGGAGTTGACTTCAA+CGG - chr1_1:30005625-30005644 Msa0017950:intron 50.0%
CCAGCACTCGATCTTCATCT+TGG + chr1_1:30005813-30005832 None:intergenic 50.0%
CCAAGATGAAGATCGAGTGC+TGG - chr1_1:30005810-30005829 Msa0017950:intron 50.0%
AAGGCCCTATTCACTGGTAG+AGG + chr1_1:30005871-30005890 None:intergenic 50.0%
CATGCTCCTCTCCCAATATG+AGG + chr1_1:30006026-30006045 None:intergenic 50.0%
GTCCCTTCTTGAAACAGCAG+GGG - chr1_1:30006077-30006096 Msa0017950:intron 50.0%
CATGGATGCTCTCAGATGCA+GGG + chr1_1:30006662-30006681 None:intergenic 50.0%
ACATGGATGCTCTCAGATGC+AGG + chr1_1:30006663-30006682 None:intergenic 50.0%
GCTCGCTCAGTTAGTGTACA+TGG + chr1_1:30006680-30006699 None:intergenic 50.0%
ATGCAAGGATCCGTTCGTGT+GGG - chr1_1:30006701-30006720 Msa0017950:intron 50.0%
GCTGTTAATGCCTCAGCTGA+TGG + chr1_1:30006767-30006786 None:intergenic 50.0%
AGGAGACCTAAGTCGAAGAG+TGG + chr1_1:30006893-30006912 None:intergenic 50.0%
TTCGACTTAGGTCTCCTCAG+TGG - chr1_1:30006896-30006915 Msa0017950:intron 50.0%
TTTCAGTTCCACAGCCACTG+AGG + chr1_1:30006913-30006932 None:intergenic 50.0%
CTAAATGGGAAGATGCGGAG+AGG + chr1_1:30006979-30006998 None:intergenic 50.0%
GCCGTCTAAATGGGAAGATG+CGG + chr1_1:30006984-30007003 None:intergenic 50.0%
GGAGAACGTTGCCGTCTAAA+TGG + chr1_1:30006994-30007013 None:intergenic 50.0%
TCTGAGCGAGTTGTAAGTGG+GGG + chr1_1:30007064-30007083 None:intergenic 50.0%
ACTGGTACATTTCCGAGTCC+TGG + chr1_1:30007142-30007161 None:intergenic 50.0%
CAGACTAGGAAATCGGGAAC+GGG + chr1_1:30007178-30007197 None:intergenic 50.0%
GGTTCTTCCCCTCGATTAGT+TGG + chr1_1:30007223-30007242 None:intergenic 50.0%
TTGTGACCGCATTTAGGCCA+CGG + chr1_1:30007508-30007527 None:intergenic 50.0%
TCTAGCAACACCTTGCTTGC+TGG - chr1_1:30007566-30007585 Msa0017950:CDS 50.0%
! AGCTTGTTCACCAGCAAGCA+AGG + chr1_1:30007579-30007598 None:intergenic 50.0%
!! GGGCCAGTACTTTTGTTGTC+AGG + chr1_1:30007944-30007963 None:intergenic 50.0%
! GTCTCCTTTTCCGGTTTTCG+CGG - chr1_1:30008063-30008082 Msa0017950:CDS 50.0%
! GTCACCGTGCCATTGCATCT+GGG + chr1_1:29998438-29998457 Msa0017960:CDS 55.0%
! TGTCACCGTGCCATTGCATC+TGG + chr1_1:29998439-29998458 Msa0017960:CDS 55.0%
ATTGGAGTGAGGACCCACTG+TGG - chr1_1:29999602-29999621 Msa0017950:intron 55.0%
TTATGCAGGCACCACCAGCA+TGG - chr1_1:30000084-30000103 Msa0017950:intron 55.0%
CTTGCCATCTACCATGCTGG+TGG + chr1_1:30000098-30000117 Msa0017960:intron 55.0%
GCAAGGATAGGCAGAGTTGC+AGG - chr1_1:30000117-30000136 Msa0017950:intron 55.0%
AACACCGGAAAAGTCGTCGG+CGG - chr1_1:30000591-30000610 Msa0017950:intron 55.0%
! AACTCCGCCGACGACTTTTC+CGG + chr1_1:30000598-30000617 Msa0017960:CDS 55.0%
GTCGTCGGCGGAGTTCTTAT+CGG - chr1_1:30000603-30000622 Msa0017950:intron 55.0%
GCGGAGTTCTTATCGGTGGT+TGG - chr1_1:30000610-30000629 Msa0017950:intron 55.0%
CAACAGCTTGTACCAAGGGC+AGG - chr1_1:30002981-30003000 Msa0017950:intron 55.0%
TTGGCTCCTCCTCCAGAATC+TGG + chr1_1:30003110-30003129 None:intergenic 55.0%
! GGATCACTGGCACTGGGAAA+TGG + chr1_1:30003539-30003558 None:intergenic 55.0%
CTCCCAAGGATGAGGCTACA+AGG - chr1_1:30003871-30003890 Msa0017950:intron 55.0%
GTGCCTTGTAGCCTCATCCT+TGG + chr1_1:30003877-30003896 None:intergenic 55.0%
AGGCTGTTGCATGCTTGACC+AGG + chr1_1:30004044-30004063 None:intergenic 55.0%
! GGCCAGATGGGTTCTTTGAG+TGG + chr1_1:30004515-30004534 None:intergenic 55.0%
! GCTTCCTCCCTTTTAGCCCT+GGG - chr1_1:30005268-30005287 Msa0017950:intron 55.0%
TTGTCCCAGGGCTAAAAGGG+AGG + chr1_1:30005275-30005294 None:intergenic 55.0%
TAAGAGCAGAGCGAGAAGGG+GGG - chr1_1:30005610-30005629 Msa0017950:intron 55.0%
! AGGGGGGAGTTGACTTCAAC+GGG - chr1_1:30005626-30005645 Msa0017950:intron 55.0%
GGATATCAGGGATGTGCAGG+TGG + chr1_1:30005932-30005951 None:intergenic 55.0%
!! TCTGCAAATCTGTGACGGGC+AGG - chr1_1:30005971-30005990 Msa0017950:intron 55.0%
!! CTGCAAATCTGTGACGGGCA+GGG - chr1_1:30005972-30005991 Msa0017950:intron 55.0%
!! AAATCTGTGACGGGCAGGGA+AGG - chr1_1:30005976-30005995 Msa0017950:intron 55.0%
! AGGAGCATGAGCTACCCTCT+GGG - chr1_1:30006037-30006056 Msa0017950:intron 55.0%
!! CAATCGTCGATTCCTTCCCG+AGG + chr1_1:30006638-30006657 None:intergenic 55.0%
CTAACTGAGCGAGCCATGCA+AGG - chr1_1:30006686-30006705 Msa0017950:intron 55.0%
CACACGAACGGATCCTTGCA+TGG + chr1_1:30006702-30006721 None:intergenic 55.0%
CATGCAAGGATCCGTTCGTG+TGG - chr1_1:30006700-30006719 Msa0017950:intron 55.0%
! AGTTCTGGTGGCAATGGTGG+TGG + chr1_1:30006734-30006753 None:intergenic 55.0%
AAGTCGAAGAGTGGTCCGCT+TGG + chr1_1:30006884-30006903 None:intergenic 55.0%
AGCGGACCACTCTTCGACTT+AGG - chr1_1:30006884-30006903 Msa0017950:intron 55.0%
TTAGGTCTCCTCAGTGGCTG+TGG - chr1_1:30006902-30006921 Msa0017950:intron 55.0%
AATGGGAAGATGCGGAGAGG+TGG + chr1_1:30006976-30006995 None:intergenic 55.0%
!! GGCCGGAAGCAAGTTGGTAA+TGG + chr1_1:30007043-30007062 None:intergenic 55.0%
ATCGGGAACGGGTACAGTGA+CGG + chr1_1:30007167-30007186 None:intergenic 55.0%
CAAGCCGCGAAAACCGGAAA+AGG + chr1_1:30008070-30008089 None:intergenic 55.0%
! CTTTTCCGGTTTTCGCGGCT+TGG - chr1_1:30008068-30008087 Msa0017950:CDS 55.0%
TCACTCCAAGCCGCGAAAAC+CGG + chr1_1:30008076-30008095 None:intergenic 55.0%
TATCGGGCCTTACCTGGCGA+AGG - chr1_1:29998320-29998339 Msa0017950:intron 60.0%
ATCGGGCCTTACCTGGCGAA+GGG - chr1_1:29998321-29998340 Msa0017950:intron 60.0%
GTGGCCCAGATGCAATGGCA+CGG - chr1_1:29998431-29998450 Msa0017950:intron 60.0%
GGCACCACCAGCATGGTAGA+TGG - chr1_1:30000091-30000110 Msa0017950:intron 60.0%
GTCGGCGGAGTTCTTATCGG+TGG - chr1_1:30000606-30000625 Msa0017950:intron 60.0%
TTTCGGAGAGCCGGCCAGAT+GGG + chr1_1:30004527-30004546 None:intergenic 60.0%
ATTTCGGAGAGCCGGCCAGA+TGG + chr1_1:30004528-30004547 None:intergenic 60.0%
! GGCTTCCTCCCTTTTAGCCC+TGG - chr1_1:30005267-30005286 Msa0017950:intron 60.0%
! GAGGAGCATGAGCTACCCTC+TGG - chr1_1:30006036-30006055 Msa0017950:intron 60.0%
AGCTACCCTCTGGGCTCATC+TGG - chr1_1:30006046-30006065 Msa0017950:intron 60.0%
GCTACCCTCTGGGCTCATCT+GGG - chr1_1:30006047-30006066 Msa0017950:intron 60.0%
GCAACCCAGATGAGCCCAGA+GGG + chr1_1:30006054-30006073 None:intergenic 60.0%
!! TCTGGTGGCAATGGTGGTGG+AGG + chr1_1:30006731-30006750 None:intergenic 60.0%
GCAACACCAGGTGGACCAAG+CGG - chr1_1:30006866-30006885 Msa0017950:intron 60.0%
!! GGGGGGTGATGGAACTGGAA+GGG + chr1_1:30006936-30006955 None:intergenic 60.0%
!! GTTTCGGGGGGTGATGGAAC+TGG + chr1_1:30006941-30006960 None:intergenic 60.0%
GTTCCATCACCCCCCGAAAC+AGG - chr1_1:30006941-30006960 Msa0017950:intron 60.0%
AGTCCTGTTTCGGGGGGTGA+TGG + chr1_1:30006947-30006966 None:intergenic 60.0%
AGCGAGTTGTAAGTGGGGGC+CGG + chr1_1:30007060-30007079 None:intergenic 60.0%
TCGGGAACGGGTACAGTGAC+GGG + chr1_1:30007166-30007185 None:intergenic 60.0%
!! TCTGTGACGGGCAGGGAAGG+TGG - chr1_1:30005979-30005998 Msa0017950:intron 65.0%
GGCAACCCAGATGAGCCCAG+AGG + chr1_1:30006055-30006074 None:intergenic 65.0%
AGTGGTCCGCTTGGTCCACC+TGG + chr1_1:30006875-30006894 None:intergenic 65.0%
!! CGGGGGGTGATGGAACTGGA+AGG + chr1_1:30006937-30006956 None:intergenic 65.0%
AGTGGGGGCCGGAAGCAAGT+TGG + chr1_1:30007049-30007068 None:intergenic 65.0%
! ACGGGTACAGTGACGGGGAC+TGG + chr1_1:30007160-30007179 None:intergenic 65.0%
CGGGAACGGGTACAGTGACG+GGG + chr1_1:30007165-30007184 None:intergenic 65.0%
GACGGGCAGGGAAGGTGGAG+TGG - chr1_1:30005984-30006003 Msa0017950:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29996728 30008475 29996728 ID=Msa0017950;Name=Msa0017950
chr1_1 mRNA 29996728 30008475 29996728 ID=Msa0017950-mRNA-1;Parent=Msa0017950;Name=Msa0017950-mRNA-1;_AED=0.21;_eAED=0.21;_QI=226|0.75|0.77|1|0.87|0.77|9|984|464
chr1_1 exon 29996728 29997707 29996728 ID=Msa0017950-mRNA-1:exon:10040;Parent=Msa0017950-mRNA-1
chr1_1 exon 30004718 30004757 30004718 ID=Msa0017950-mRNA-1:exon:10039;Parent=Msa0017950-mRNA-1
chr1_1 exon 30005027 30005111 30005027 ID=Msa0017950-mRNA-1:exon:10038;Parent=Msa0017950-mRNA-1
chr1_1 exon 30005199 30005249 30005199 ID=Msa0017950-mRNA-1:exon:10037;Parent=Msa0017950-mRNA-1
chr1_1 exon 30005628 30005701 30005628 ID=Msa0017950-mRNA-1:exon:10036;Parent=Msa0017950-mRNA-1
chr1_1 exon 30005899 30005987 30005899 ID=Msa0017950-mRNA-1:exon:10035;Parent=Msa0017950-mRNA-1
chr1_1 exon 30006393 30006475 30006393 ID=Msa0017950-mRNA-1:exon:10034;Parent=Msa0017950-mRNA-1
chr1_1 exon 30007069 30007669 30007069 ID=Msa0017950-mRNA-1:exon:10033;Parent=Msa0017950-mRNA-1
chr1_1 exon 30007874 30008475 30007874 ID=Msa0017950-mRNA-1:exon:10032;Parent=Msa0017950-mRNA-1
chr1_1 five_prime_UTR 30008250 30008475 30008250 ID=Msa0017950-mRNA-1:five_prime_utr;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30007874 30008249 30007874 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30007069 30007669 30007069 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30006393 30006475 30006393 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30005899 30005987 30005899 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30005628 30005701 30005628 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30005199 30005249 30005199 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30005027 30005111 30005027 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 CDS 30004722 30004757 30004722 ID=Msa0017950-mRNA-1:cds;Parent=Msa0017950-mRNA-1
chr1_1 three_prime_UTR 30004718 30004721 30004718 ID=Msa0017950-mRNA-1:three_prime_utr;Parent=Msa0017950-mRNA-1
chr1_1 three_prime_UTR 29996728 29997707 29996728 ID=Msa0017950-mRNA-1:three_prime_utr;Parent=Msa0017950-mRNA-1
Gene Sequence

>Msa0017950

ATGAAGTCCATGATGAATGATAGTAACATTAGTGATGATGGAAACAATCATAACTGGTTAGGATTCTCTCTCTCACCCTACCACATGAAAATGGAGCTTACTTCTTCTGACCCTTCTCAACATCATCATCCTAGTCATCACCAAAATCATCATCACTACTATCATCATCATGACAATCAACCTTCCTCTTCTGTTGTTCCTTCAAACTTTTACTTGATGTCACCTTCACACCTAAACATGAACAACACTTCTTCATTATGTTATGGTCTTGGAGAAAACAACAATTCCTTTCATTCTTCTTTACCTATGATGCCACTTAAATCTGATGGATCACTTTGCATAATGGAAGAAGCTCTCACTAGATCACAATCTCAAGTGATGATGCCAACTTCATCTCCAAAACTAGAAGACTTCCTTGGTGGTGCAACTATGGGAACTCATAATCATGAATATGAAGGACATGAAAGAGAAACAATGGCTTTATTAAGCTTGGACAGCATCTACTATAACAACAATGCAGAACATGAAACCAATAGAGAACATTCTTCTCTTGACCATTCTTCATATTTTTCAGGTTTTTCTTGTCATGGAATGTATCAAAATCCATTAATGGAAGAAGAAGAACAAACCAAGGAAGAAAGTATTTATAGCTTCAAAAACTTTGTGGCTCCTAGAGATTATTCTTTGGAGCAACATCATCATCAAGTGAATAATAGTGTTGGTAGTATTGGAGATGATGGTTCTGTGGGAACAGTTAATGGTTGTGGAGAGTTACAAACTCTAAGCCTTTCTATGAGTCCTGGTTCTCAATCAAGCTGTGTTACTGTTCCAAATCAGATTTCAGCTTCTGGAACTGATTCAGTAGTTGTTGAAGCTAAAAAGAGAGGACATGCTAAGGTTGGACAGAAGCAACCTGCTCATAGGAAAACTATTAGCACATTTGGTCAAAGAACTTCTCAGTATAGAGGAGTTACAAGGCATAGATGGACCGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCTTCAACGCATATAAACTTCTCGATTGAAATTTACAAAAATGAACTCGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCATTTGAGAAGAAAGAGTAGTGGTTTTTCAAGGGGTGCTTCAATGTATAGAGGGGTGACAAGGCACCACCAGCATGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAGGGACCTTTATCTTGGAACATTTAGTAAGTCCGCACTCAAGAGGAAGCGGCTGAAGCATATGATGTAG
Protein sequence

>Msa0017950

MKSMMNDSNISDDGNNHNWLGFSLSPYHMKMELTSSDPSQHHHPSHHQNHHHYYHHHDNQPSSSVVPSNFYLMSPSHLNMNNTSSLCYGLGENNNSFHSSLPMMPLKSDGSLCIMEEALTRSQSQVMMPTSSPKLEDFLGGATMGTHNHEYEGHERETMALLSLDSIYYNNNAEHETNREHSSLDHSSYFSGFSCHGMYQNPLMEEEEQTKEESIYSFKNFVAPRDYSLEQHHHQVNNSVGSIGDDGSVGTVNGCGELQTLSLSMSPGSQSSCVTVPNQISASGTDSVVVEAKKRGHAKVGQKQPAHRKTISTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFSIEIYKNELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSKSALKRKRLKHMM*