AlfalfaGEDB | Msa1097360

M. sativa cultivar zhongmu-4 / Msa1097360

KEGG: K08596|K13459
GO: GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
PFAM: PF00931.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097360	XP_039684124.1	78.581	775	158	3	1	767	213	987	0.0	1199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097360	sp\|O81825\|DRL28_ARATH	28.951	791	499	22	1	764	142	896	8.34e-65	236

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097360	A0A396GWK9	79.270	767	148	4	1	766	235	991	0.0	1181

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014710	Msa1097360	0.807733	4.375165e-50	-8.615850e-47
Msa0243710	Msa1097360	0.802524	5.385758e-49	-8.615850e-47
Msa0473240	Msa1097360	0.824606	7.369761e-54	-8.615850e-47
Msa0484780	Msa1097360	0.807046	6.121103e-50	-8.615850e-47
Msa0756630	Msa1097360	-0.814107	1.822802e-51	-8.615850e-47
Msa1082500	Msa1097360	0.809178	2.151562e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097360	MtrunA17_Chr7g0221171	79.270	767	148	4	1	766	235	991	0.0	1181
Msa1097360	MtrunA17_Chr7g0221141	76.197	773	169	4	1	766	1	765	0.0	1139
Msa1097360	MtrunA17_Chr7g0221111	65.365	768	227	13	20	766	11	760	0.0	912
Msa1097360	MtrunA17_Chr7g0221021	77.352	574	123	2	1	567	213	786	0.0	872
Msa1097360	MtrunA17_Chr7g0221061	81.339	493	87	4	1	489	283	774	0.0	791
Msa1097360	MtrunA17_Chr7g0221131	68.761	557	148	7	1	543	247	791	0.0	729
Msa1097360	MtrunA17_Chr7g0221071	71.765	510	120	6	1	494	102	603	0.0	704
Msa1097360	MtrunA17_Chr7g0220981	65.110	364	117	3	1	362	61	416	1.20e-151	449
Msa1097360	MtrunA17_Chr7g0221051	69.597	273	76	3	500	765	1	273	1.61e-114	348
Msa1097360	MtrunA17_Chr7g0220991	52.713	387	146	4	414	766	112	495	2.20e-111	348

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097360	AT4G27220.1	28.951	791	499	22	1	764	142	896	8.48e-66	236
Msa1097360	AT4G27220.2	28.951	791	499	22	1	764	150	904	1.24e-65	235
Msa1097360	AT4G10780.2	32.752	516	284	18	1	498	181	651	1.56e-56	209
Msa1097360	AT4G10780.1	32.752	516	284	18	1	498	181	651	1.79e-56	208
Msa1097360	AT1G61180.1	32.777	479	268	18	1	466	180	617	9.05e-55	203
Msa1097360	AT1G61180.2	32.777	479	268	18	1	466	180	617	1.16e-54	203
Msa1097360	AT1G12220.3	31.740	523	295	19	1	506	63	540	3.81e-53	197
Msa1097360	AT1G12220.1	31.740	523	295	19	1	506	184	661	5.17e-53	198
Msa1097360	AT1G12220.2	31.740	523	295	19	1	506	184	661	5.17e-53	198
Msa1097360	AT1G12210.3	32.025	484	299	14	1	471	142	608	4.88e-51	192

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Find 128 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTCTCCATTTGT+TGG	0.421078	7_3:+22670803	None:intergenic
AAAATTGGAAATGGGACAAA+TGG	0.486925	7_3:-22672048	Msa1097360:CDS
AACTTCAAGGTTGAGAATCT+TGG	0.355651	7_3:+22670753	None:intergenic
AACTTTACTTGCAACTCTCG+TGG	0.535968	7_3:-22672615	Msa1097360:CDS
AAGGTCTTTAGGCAGTATGT+GGG	0.667230	7_3:+22670927	None:intergenic
AAGGTTAAGTCGGTCAACTT+AGG	0.506879	7_3:+22670466	None:intergenic
AATATGTTGGAATGTTTACG+AGG	0.705628	7_3:-22671132	Msa1097360:CDS
AATGCTTGTAGCTCTCCCAA+TGG	0.686838	7_3:+22671360	None:intergenic
AATTAGGTGACATGCCCTCT+GGG	0.555581	7_3:+22671583	None:intergenic
AATTCTTGATTGCCAACAAA+TGG	0.390123	7_3:-22670815	Msa1097360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTAATGCCATTCACATT+TGG	+	chr7_3:22670630-22670649	None:intergenic	30.0%
GAAACATGTATGTCATCAAA+TGG	-	chr7_3:22670668-22670687	Msa1097360:CDS	30.0%
TCTAAACACATGTGAATGTT+GGG	-	chr7_3:22670725-22670744	Msa1097360:CDS	30.0%
GAGTTGTTTATGCTAAAACT+CGG	-	chr7_3:22670747-22670766	Msa1097360:CDS	30.0%
GGATTAATGACATTCATCAA+TGG	-	chr7_3:22670886-22670905	Msa1097360:CDS	30.0%
AAAATTGGAAATGGGACAAA+TGG	-	chr7_3:22670932-22670951	Msa1097360:CDS	30.0%
TCCATCAAATTATCATAGCT+AGG	+	chr7_3:22670987-22671006	None:intergenic	30.0%
TGATGATTATGATTGGGATA+GGG	-	chr7_3:22671052-22671071	Msa1097360:CDS	30.0%
GGATTCAAGCTTATTCAATA+TGG	+	chr7_3:22671180-22671199	None:intergenic	30.0%
GAAATATGGCATGTTATATC+TGG	-	chr7_3:22671252-22671271	Msa1097360:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	22670348	22672654	22670348	ID=Msa1097360;Name=Msa1097360
chr7_3	mRNA	22670348	22672654	22670348	ID=Msa1097360-mRNA-1;Parent=Msa1097360;Name=Msa1097360-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|768
chr7_3	exon	22670348	22672654	22670348	ID=Msa1097360-mRNA-1:exon:5010;Parent=Msa1097360-mRNA-1
chr7_3	CDS	22670348	22672654	22670348	ID=Msa1097360-mRNA-1:cds;Parent=Msa1097360-mRNA-1

Gene Sequence

>Msa1097360

ATGGGAGGAGTAGGAAAAACTTTACTTGCAACTCTCGTGGAGAATGAAGTAAGAAGGAAAGCACCTTTTAAGCATGTGTTTTGGGTCACTGTTTCTCACAGTTATAGCATCTCAAAACTTCAACATGATATTGCAAAAAGAATAGGCTTGAAGCTTGATGAAGAAGATGAAAAAGTTAAAGCTGACAACTTGTCTTTGGCATTGGAGAAAAAGGAAAAATCAATTCTTATTTTGGATGATGTTTGGAAATATATTGATTTGCAGAAGGTGGGAATTCTTCCAAATGTGAATGGCATTAAAGTGATTCTAACAACTCGTTTGAAACATGTATGTCATCAAATGGATTGTCAGCCATATGCTATATTACAAATCTATCCTCTAAACACATGTGAATGTTGGGAGTTGTTTATGCTAAAACTCGGATATGATGGAACACCTAAGATACTTCCAAATGAAATAGAAAAGATTGCAAAATGTATTGTAGAGAGATTTAAGGGTTTACCACTTGCAATCAATGTGATGGCTAGAACTATGAAAGGGATTAATGACATTCATCAATGGAAACATGCACTCAACAAACTTGAAAAATTGGAAATGGGACAAATGGTGGAAGAAGAAGTCTTCAAAGTATTAAAGCCTAGCTATGATAATTTGATGGAAAAGAACTTGCAAAACTGTTTTTTGTATTGTGCATTATTATCTATTGATGATTATGATTGGGATAGGGATTGGGATGAGTTTGAAAAATATGAGTTGATCATGAAGCTAGTTGATCATGGGCAGATAAATGGGAGTATGTGTTTGGAAGAAATATTTGTTGAAGGTAAAACCATATTGAATAAGCTTGAATCCCATTCTTTGATTAGTTTTGATGATTATTTCGTAGTCACACATCCCTTCTTGAGAAATATGGCATGTTATATCTGGAAAGAGAGTAAGAGGAATGCTATAGTGAAATCGGGTAAAGGATTGACCAAGATACCTCTCTCACATGGATGGGCAACTGATTTAGAGTTGGTTCATATGCGGGATTGTGATATAAAACAAATCCCAGAGGGCATGTCACCTAATTGTCCAAAGTTGTCCACCTTGATTATAAATAAAGTGTCCATTAGTTATGTTCCTGAGAGTTTTTTCCAATATATGAATATTCTGTCAATATTGGATCTATCCTACAATAAAAATTTAGAATCATTGCCAAACTCTGTGAGTGAATTCAGGTCTCTTATTTCTTTAGTGCTCAATAGATGTTATTCATTGAAACATGTGCCACCATTGGGAGAGCTACAAGCATTGTCAAGATTGGTCATTTCAAAAACTTCCATTGAGAAAGCACCACAAGGCTTAGAAAAACTAATCAATTTGAAAAGGCTTGATCTATCTAGTAATGAGAGTTTGAATATGGATTTTGGATCCTTTTCATACAATTTGACTAAACTACAATACCTCGATCTCCATGATACCAATGCTTTGATTAAAGTTGAAGATATTCAAAGGATGAATATGTTGGAATGTTTACGAGGCAGCTTGGACTGCAAAGATCACAACCAATACATACAAAAAAATCTTGACATGAGTTTTTGGCCCAAAAGATATATTCTCACAATTGCAAGTGTTTGCCGGGAAGATTATGTTAATTTGTTAAGCTTTGATTCTTATGATCCTGAAAGTAAGACTATGCAATTTGGAGATTGCGATCATTTCTCCCACATACTGCCTAAAGACCTTACATGTCTGCTTATATATATAAATAATCTTTGGGATTGCTTATGTGATGCTTTTTCATATAACTCTTCTTCTTCTTTGAGGAAAATTGAAATTCTTGATTGCCAACAAATGGAGAGCTTGTTTTGTTTATCTGGTTCTTGTTCCTTTTGCACCAAGATTCTCAACCTTGAAGTTTTGGAACTTCGAAGTTTGGAAAGTTTAACCGTTGTCTGTAAAGAAGTTTTTGATGTTAGACAATCCTTGACACCATTTGGCATATTCTCTTGTCTAAAAGAATTTAATATTTCTTATTGCCATTTGATAGAGAAGTTGTTTACACCACAATTAGTTCTGCAACTTCAAAATCTGGAGACAATATCTGTAATAAGCTGTGATTCAATGAAAGAGATATTTGCAGTGAGCAACAGTGATGACAATGACCGATCCATCATTTCACTTCCTAAGTTGACCGACTTAACCTTGAGCTTTTTACCAGAATTGAAGATCGTGTGCAAAGGCAGCATAAGGTGTGGATCTTCACTAACATGGGACATCTACGAATGTCCAAGTTTAGAGAGGCAGCCGACATTTTATTTCTGA

Protein sequence

>Msa1097360

MGGVGKTLLATLVENEVRRKAPFKHVFWVTVSHSYSISKLQHDIAKRIGLKLDEEDEKVKADNLSLALEKKEKSILILDDVWKYIDLQKVGILPNVNGIKVILTTRLKHVCHQMDCQPYAILQIYPLNTCECWELFMLKLGYDGTPKILPNEIEKIAKCIVERFKGLPLAINVMARTMKGINDIHQWKHALNKLEKLEMGQMVEEEVFKVLKPSYDNLMEKNLQNCFLYCALLSIDDYDWDRDWDEFEKYELIMKLVDHGQINGSMCLEEIFVEGKTILNKLESHSLISFDDYFVVTHPFLRNMACYIWKESKRNAIVKSGKGLTKIPLSHGWATDLELVHMRDCDIKQIPEGMSPNCPKLSTLIINKVSISYVPESFFQYMNILSILDLSYNKNLESLPNSVSEFRSLISLVLNRCYSLKHVPPLGELQALSRLVISKTSIEKAPQGLEKLINLKRLDLSSNESLNMDFGSFSYNLTKLQYLDLHDTNALIKVEDIQRMNMLECLRGSLDCKDHNQYIQKNLDMSFWPKRYILTIASVCREDYVNLLSFDSYDPESKTMQFGDCDHFSHILPKDLTCLLIYINNLWDCLCDAFSYNSSSSLRKIEILDCQQMESLFCLSGSCSFCTKILNLEVLELRSLESLTVVCKEVFDVRQSLTPFGIFSCLKEFNISYCHLIEKLFTPQLVLQLQNLETISVISCDSMKEIFAVSNSDDNDRSIISLPKLTDLTLSFLPELKIVCKGSIRCGSSLTWDIYECPSLERQPTFYF*