AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756630 MtrunA17_Chr5g0401781 94.787 211 8 2 1 211 1 208 1.54e-145 403
Msa0756630 MtrunA17_Chr4g0053351 75.132 189 45 2 20 208 3 189 4.07e-101 290
Msa0756630 MtrunA17_Chr4g0035151 62.842 183 62 1 13 195 5 181 5.47e-79 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756630 AT4G39220.2 66.292 178 60 0 28 205 13 190 2.89e-88 258
Msa0756630 AT4G39220.1 66.292 178 60 0 28 205 13 190 2.89e-88 258
Msa0756630 AT2G21600.1 60.000 195 76 2 17 211 3 195 4.99e-83 245
Msa0756630 AT2G23310.1 64.088 181 63 2 25 205 33 211 6.64e-79 235
Msa0756630 AT2G23310.2 64.088 181 62 3 25 205 33 210 6.61e-77 230
Msa0756630 AT2G18240.1 53.409 176 81 1 17 192 6 180 7.73e-63 195
Msa0756630 AT2G18240.2 53.409 176 81 1 17 192 6 180 8.00e-63 195

Find 112 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATCTGCAAATAATAAA+AGG 0.169181 5_2:+11013328 None:intergenic
ATTACTTGTGGGATCTTATA+AGG 0.171933 5_2:+11015553 None:intergenic
TTCCCTATTGGGCAACTATT+TGG 0.179428 5_2:-11013522 Msa0756630:three_prime_UTR
AATCCAAAATTAAATAAAAT+TGG 0.212256 5_2:+11013071 None:intergenic
TAAAATCATCATATATTAAA+AGG 0.263537 5_2:+11013265 None:intergenic
CTGGATGTTCAATTCCCTAT+TGG 0.268696 5_2:-11013534 Msa0756630:three_prime_UTR
GATGCCTTCGATGGCGGCTT+TGG 0.278485 5_2:-11013500 Msa0756630:three_prime_UTR
TAATGTGAAGCTACATGTTT+GGG 0.279412 5_2:+11013634 None:intergenic
GGCCTATACTCCTCTTCTAC+TGG 0.286487 5_2:-11013966 Msa0756630:CDS
AATCTCTTCGGTGGCGGTTC+CGG 0.307108 5_2:+11015426 None:intergenic
CGGCTCCATCACGCGCAAAT+TGG 0.307389 5_2:+11015486 None:intergenic
CGTTTGATATTCCAGTCTTC+TGG 0.311008 5_2:-11013987 Msa0756630:CDS
CATCCAAATAGTTGCCCAAT+AGG 0.316865 5_2:+11013519 None:intergenic
TGAATTCAGCAATAAGAGTT+TGG 0.333284 5_2:+11013392 None:intergenic
ATTTAAAAGTCTCAGATGAT+TGG 0.346254 5_2:+11013136 None:intergenic
TGGATGTTCAATTCCCTATT+GGG 0.350059 5_2:-11013533 Msa0756630:three_prime_UTR
TGTAGTATTGCGGTTTCCGC+TGG 0.355795 5_2:+11015400 None:intergenic
AGATATGTACCGTTCAATTT+CGG 0.357992 5_2:-11013889 Msa0756630:CDS
ATAATGTGAAGCTACATGTT+TGG 0.362106 5_2:+11013633 None:intergenic
TACAATTGAAACAAGCGATA+TGG 0.364821 5_2:-11015381 Msa0756630:CDS
ATGCCTTCGATGGCGGCTTT+GGG 0.380608 5_2:-11013499 Msa0756630:three_prime_UTR
GGCGGTTCCGGTGCCGGTGC+CGG 0.385511 5_2:+11015438 None:intergenic
TTCGGTGGCGGTTCCGGTGC+CGG 0.385777 5_2:+11015432 None:intergenic
ACCGTTCAATTTCGGAAAAC+AGG 0.388365 5_2:-11013881 Msa0756630:intron
CTAGCGTATATGTGAACATC+TGG 0.408780 5_2:-11013553 Msa0756630:three_prime_UTR
TTACTTGTGGGATCTTATAA+GGG 0.410208 5_2:+11015554 None:intergenic
TAAAATTGGCACAGTACAAC+TGG 0.419750 5_2:+11013085 None:intergenic
GCCTTCCTATATAGAAAGAA+AGG 0.419829 5_2:+11013420 None:intergenic
CTCCGCGTCTACTTCTTAGA+AGG 0.426734 5_2:-11015271 Msa0756630:CDS
AACTCATCGGAAGCTCTAAT+AGG 0.427663 5_2:+11015136 None:intergenic
GGCGGCTTTGGGAAGATGTT+GGG 0.434631 5_2:-11013488 Msa0756630:three_prime_UTR
TTCCGCTGGGGAAATCTCTT+CGG 0.439901 5_2:+11015414 None:intergenic
CCGGCGTCGACGACGACTGC+TGG 0.442121 5_2:+11015457 None:intergenic
ATCCAAATAGTTGCCCAATA+GGG 0.450449 5_2:+11013520 None:intergenic
GCCTCCCTGAGTTCAAGTTC+TGG 0.451201 5_2:-11015096 Msa0756630:intron
TACGTCGTTACGTACGGTCT+TGG 0.457317 5_2:-11015244 Msa0756630:CDS
CCCATCTGCAAATAATAAAA+GGG 0.463408 5_2:+11013329 None:intergenic
ATCCATCGCGGTAGCACGTA+CGG 0.464069 5_2:+11015325 None:intergenic
AATAAAAGGGACTGCTGCAC+AGG 0.465889 5_2:+11013342 None:intergenic
CCATCACGCGCAAATTGGAT+TGG 0.473804 5_2:+11015491 None:intergenic
CAGAAATTTGAAATTACTTG+TGG 0.474213 5_2:+11015541 None:intergenic
TCAGAGGCGTCGGCGATGGC+GGG 0.474347 5_2:+11015172 None:intergenic
CAATTTGCGCGTGATGGAGC+CGG 0.476023 5_2:-11015485 Msa0756630:exon
AGGAGTATAGGCCAGAAGAC+TGG 0.477362 5_2:+11013976 None:intergenic
GTCGACGCCGGCACCGGCAC+CGG 0.482106 5_2:-11015445 Msa0756630:CDS
GCCTATACTCCTCTTCTACT+GGG 0.482573 5_2:-11013965 Msa0756630:CDS
AACTATTTGGATGCCTTCGA+TGG 0.485046 5_2:-11013509 Msa0756630:three_prime_UTR
GTCAGAGGCGTCGGCGATGG+CGG 0.486654 5_2:+11015171 None:intergenic
TGGCGGCTTTGGGAAGATGT+TGG 0.490480 5_2:-11013489 Msa0756630:three_prime_UTR
CCCTTTCTTTCTATATAGGA+AGG 0.492829 5_2:-11013421 Msa0756630:three_prime_UTR
TCCATCGCGGTAGCACGTAC+GGG 0.502160 5_2:+11015326 None:intergenic
CGATGGCGGGATCAACTTGA+GGG 0.503574 5_2:+11015185 None:intergenic
CCAATCCAATTTGCGCGTGA+TGG 0.504986 5_2:-11015491 Msa0756630:exon
AACTGAAAATTTCAGTCCAC+AGG 0.507776 5_2:+11013685 None:intergenic
GACTGATTAAGATTGCTTTG+AGG 0.509371 5_2:-11013577 Msa0756630:three_prime_UTR
AGAAATTTGAAATTACTTGT+GGG 0.510624 5_2:+11015542 None:intergenic
ACCCAGTAGAAGAGGAGTAT+AGG 0.512859 5_2:+11013964 None:intergenic
GGCTTCTACGTCGTTACGTA+CGG 0.512972 5_2:-11015250 Msa0756630:CDS
CGGGATCAACTTGAGGGGAG+AGG 0.513275 5_2:+11015191 None:intergenic
ACCGTCAGAGGCGTCGGCGA+TGG 0.514055 5_2:+11015168 None:intergenic
TACATCCTCAATCTTCTCAT+CGG 0.515635 5_2:-11015217 Msa0756630:CDS
TATTACCAGAACTTGAACTC+AGG 0.516687 5_2:+11015091 None:intergenic
ACGACGACTGCTGGTGCTGC+CGG 0.516904 5_2:+11015466 None:intergenic
TCAGGGAGGCGGCGAACGAA+AGG 0.517684 5_2:+11015109 None:intergenic
GTAGTATTGCGGTTTCCGCT+GGG 0.520236 5_2:+11015401 None:intergenic
GTCGTCGTCGACGCCGGCAC+CGG 0.524903 5_2:-11015451 Msa0756630:CDS
CCTTCCTATATAGAAAGAAA+GGG 0.525365 5_2:+11013421 None:intergenic
TGGGGAAATCTCTTCGGTGG+CGG 0.525533 5_2:+11015420 None:intergenic
ACAAGACCACCCAGTAGAAG+AGG 0.526419 5_2:+11013956 None:intergenic
TTGTTTCAATTGTAGTATTG+CGG 0.528509 5_2:+11015390 None:intergenic
TACGTGCTACCGCGATGGAT+AGG 0.536752 5_2:-11015322 Msa0756630:CDS
ACGTGCTACCGCGATGGATA+GGG 0.540998 5_2:-11015321 Msa0756630:CDS
CGCTGGGGAAATCTCTTCGG+TGG 0.542688 5_2:+11015417 None:intergenic
GCGATGGCGGGATCAACTTG+AGG 0.546409 5_2:+11015184 None:intergenic
AGTAGGACCGTCAGAGGCGT+CGG 0.550171 5_2:+11015162 None:intergenic
GCCATCGCCGACGCCTCTGA+CGG 0.553406 5_2:-11015169 Msa0756630:CDS
CCCCGTACGTGCTACCGCGA+TGG 0.554113 5_2:-11015327 Msa0756630:CDS
TCTTGTTCTCACTTACTATG+AGG 0.557944 5_2:-11013939 Msa0756630:CDS
CTTCCCAAAGCCGCCATCGA+AGG 0.572881 5_2:+11013496 None:intergenic
TATTTGGATGCCTTCGATGG+CGG 0.573269 5_2:-11013506 Msa0756630:three_prime_UTR
TCATCATATATTAAAAGGAA+AGG 0.574411 5_2:+11013270 None:intergenic
ATTGGCACAGTACAACTGGT+TGG 0.579263 5_2:+11013089 None:intergenic
GGAAACCGATGAGAAGATTG+AGG 0.580080 5_2:+11015212 None:intergenic
AGGAAGAGTAGGACCGTCAG+AGG 0.580884 5_2:+11015156 None:intergenic
TTGGATCGGATGTAACGTGC+TGG 0.585151 5_2:+11015510 None:intergenic
GGAGGCGGCGAACGAAAGGA+CGG 0.592422 5_2:+11015113 None:intergenic
TGTTCTCACTTACTATGAGG+AGG 0.595668 5_2:-11013936 Msa0756630:CDS
ATTACCAGAACTTGAACTCA+GGG 0.599316 5_2:+11015092 None:intergenic
AGTGAAAATAACTTAAGAGA+GGG 0.600585 5_2:+11013237 None:intergenic
ATACAACCGAGGGGTAACCT+TGG 0.605572 5_2:-11013030 None:intergenic
CCAGCAGTCGTCGTCGACGC+CGG 0.606494 5_2:-11015457 Msa0756630:CDS
GTTGCGCCAAGGTTACCCCT+CGG 0.606505 5_2:+11013024 None:intergenic
GAAGCTCTAATAGGAAGAGT+AGG 0.606900 5_2:+11015145 None:intergenic
ACGCGCAAATTGGATTGGAT+CGG 0.613606 5_2:+11015496 None:intergenic
TAGTATTGCGGTTTCCGCTG+GGG 0.617844 5_2:+11015402 None:intergenic
AAGTGAAAATAACTTAAGAG+AGG 0.622794 5_2:+11013236 None:intergenic
AGAAAGCACAAGTCTTCCTG+TGG 0.635231 5_2:-11013701 Msa0756630:CDS
AGAACTTGAACTCAGGGAGG+CGG 0.636334 5_2:+11015098 None:intergenic
AACGAAAGGACGGAACTCAT+CGG 0.637257 5_2:+11015123 None:intergenic
CGATCACTTGATACAACCGA+GGG 0.658454 5_2:-11013040 Msa0756630:three_prime_UTR
TATACTCCTCTTCTACTGGG+TGG 0.667420 5_2:-11013962 Msa0756630:CDS
GATGGCGGGATCAACTTGAG+GGG 0.681913 5_2:+11015186 None:intergenic
AGCCTTCTAAGAAGTAGACG+CGG 0.688638 5_2:+11015269 None:intergenic
CCATCGCGGTAGCACGTACG+GGG 0.693992 5_2:+11015327 None:intergenic
CACCGAAGAGATTTCCCCAG+CGG 0.694340 5_2:-11015416 Msa0756630:CDS
CTTCTAAGAAGTAGACGCGG+AGG 0.701782 5_2:+11015272 None:intergenic
ACGATCACTTGATACAACCG+AGG 0.704838 5_2:-11013041 Msa0756630:three_prime_UTR
AATGTGAAGCTACATGTTTG+GGG 0.712062 5_2:+11013635 None:intergenic
ACCAGAACTTGAACTCAGGG+AGG 0.720457 5_2:+11015095 None:intergenic
ACCGAAAACCCTATCCATCG+CGG 0.766599 5_2:+11015313 None:intergenic
GGGCAGGTACTCGATCACAG+TGG 0.793101 5_2:-11014046 Msa0756630:intron
GATCACTTGATACAACCGAG+GGG 0.833564 5_2:-11013039 Msa0756630:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAGTATTTTACAAAA+GGG + chr5_2:11015147-11015166 None:intergenic 10.0%
!!! AAAAAAAAGTATTTTACAAA+AGG + chr5_2:11015148-11015167 None:intergenic 10.0%
!!! TTTTGTAATTTTTTTGTTAT+TGG + chr5_2:11015229-11015248 None:intergenic 10.0%
!! TAAAATCATCATATATTAAA+AGG + chr5_2:11015329-11015348 None:intergenic 10.0%
!!! TTTTAATATATGATGATTTT+AGG - chr5_2:11015328-11015347 Msa0756630:CDS 10.0%
!!! TTTTTCTGATATAAATTTTA+TGG - chr5_2:11015416-11015435 Msa0756630:CDS 10.0%
!! AATCCAAAATTAAATAAAAT+TGG + chr5_2:11015523-11015542 None:intergenic 10.0%
!!! AGAAATTTGAAATTACTTGT+GGG + chr5_2:11013052-11013071 None:intergenic 20.0%
!!! ATCGTTTAATTGATTGATTT+TGG - chr5_2:11013543-11013562 Msa0756630:three_prime_UTR 20.0%
!!! TAATTGATTGATTTTGGTAT+AGG - chr5_2:11013549-11013568 Msa0756630:three_prime_UTR 20.0%
!! TGCATAATTATTGTTAAATG+TGG - chr5_2:11013707-11013726 Msa0756630:CDS 20.0%
!!! TTCTCATCAAAATTTCTTTT+TGG + chr5_2:11013818-11013837 None:intergenic 20.0%
!! TCATCATATATTAAAAGGAA+AGG + chr5_2:11015324-11015343 None:intergenic 20.0%
!!! TTTTCTTATCTGTTATTTCA+TGG - chr5_2:11015383-11015402 Msa0756630:CDS 20.0%
!!! GTGCCAATTTTATTTAATTT+TGG - chr5_2:11015517-11015536 Msa0756630:five_prime_UTR 20.0%
!! CAGAAATTTGAAATTACTTG+TGG + chr5_2:11013053-11013072 None:intergenic 25.0%
! TTGTTTCAATTGTAGTATTG+CGG + chr5_2:11013204-11013223 None:intergenic 25.0%
! AATTATGCACAATATCATCA+AGG + chr5_2:11013696-11013715 None:intergenic 25.0%
! TTTGTTAGATAGTTGTTAGT+TGG - chr5_2:11013949-11013968 Msa0756630:CDS 25.0%
! TATGGAAACAACTTATGATA+AGG - chr5_2:11014169-11014188 Msa0756630:intron 25.0%
!!! GTTGTTTTCATAAAGTATAC+TGG + chr5_2:11014230-11014249 None:intergenic 25.0%
! ATTAAGTTCTTTATCCAAAG+AGG - chr5_2:11014351-11014370 Msa0756630:intron 25.0%
!!! AGTTTCTTTTTCACTTAGTA+AGG - chr5_2:11014477-11014496 Msa0756630:intron 25.0%
!!! TTGTGTTGATTGTTGTTATA+AGG - chr5_2:11014787-11014806 Msa0756630:intron 25.0%
!! TTTTCCCTTTCTTTCTATAT+AGG - chr5_2:11015166-11015185 Msa0756630:CDS 25.0%
! AGTGAAAATAACTTAAGAGA+GGG + chr5_2:11015357-11015376 None:intergenic 25.0%
! AAGTGAAAATAACTTAAGAG+AGG + chr5_2:11015358-11015377 None:intergenic 25.0%
!!! TCTCTTAAGTTATTTTCACT+TGG - chr5_2:11015357-11015376 Msa0756630:CDS 25.0%
!!! TTTATATCAGAAAAAGTGCT+AGG + chr5_2:11015411-11015430 None:intergenic 25.0%
! ATTTAAAAGTCTCAGATGAT+TGG + chr5_2:11015458-11015477 None:intergenic 25.0%
TTACTTGTGGGATCTTATAA+GGG + chr5_2:11013040-11013059 None:intergenic 30.0%
ATTACTTGTGGGATCTTATA+AGG + chr5_2:11013041-11013060 None:intergenic 30.0%
TACAATTGAAACAAGCGATA+TGG - chr5_2:11013210-11013229 Msa0756630:three_prime_UTR 30.0%
TAACTACCATTGTATGTCAA+CGG - chr5_2:11013989-11014008 Msa0756630:CDS 30.0%
AAAGTATACTGGATAGCTTA+TGG + chr5_2:11014219-11014238 None:intergenic 30.0%
CCTAAAACAACATATCAATG+TGG + chr5_2:11014394-11014413 None:intergenic 30.0%
!!! CCACATTGATATGTTGTTTT+AGG - chr5_2:11014391-11014410 Msa0756630:intron 30.0%
AGATATGTACCGTTCAATTT+CGG - chr5_2:11014702-11014721 Msa0756630:intron 30.0%
TAATGTGAAGCTACATGTTT+GGG + chr5_2:11014960-11014979 None:intergenic 30.0%
ATAATGTGAAGCTACATGTT+TGG + chr5_2:11014961-11014980 None:intergenic 30.0%
CCTTCCTATATAGAAAGAAA+GGG + chr5_2:11015173-11015192 None:intergenic 30.0%
TGAATTCAGCAATAAGAGTT+TGG + chr5_2:11015202-11015221 None:intergenic 30.0%
! TCCCTTTTATTATTTGCAGA+TGG - chr5_2:11015261-11015280 Msa0756630:CDS 30.0%
CCCATCTGCAAATAATAAAA+GGG + chr5_2:11015265-11015284 None:intergenic 30.0%
! CCCTTTTATTATTTGCAGAT+GGG - chr5_2:11015262-11015281 Msa0756630:CDS 30.0%
! CCTTTTATTATTTGCAGATG+GGG - chr5_2:11015263-11015282 Msa0756630:CDS 30.0%
AGGAAAGGAAAAAAATGCAA+TGG + chr5_2:11015309-11015328 None:intergenic 30.0%
TACATCCTCAATCTTCTCAT+CGG - chr5_2:11013374-11013393 Msa0756630:three_prime_UTR 35.0%
ATTACCAGAACTTGAACTCA+GGG + chr5_2:11013502-11013521 None:intergenic 35.0%
TATTACCAGAACTTGAACTC+AGG + chr5_2:11013503-11013522 None:intergenic 35.0%
TGACGGTAATGAATGATTGA+CGG + chr5_2:11013622-11013641 None:intergenic 35.0%
ACGAAGTGTGTATAAACTGA+CGG + chr5_2:11013639-11013658 None:intergenic 35.0%
! CAATCTAGCTTGCAATATCA+AGG + chr5_2:11013751-11013770 None:intergenic 35.0%
TTACATCCGTTGACATACAA+TGG + chr5_2:11013998-11014017 None:intergenic 35.0%
! TTCTCTTCCTTTTCTTCACA+GGG - chr5_2:11014078-11014097 Msa0756630:intron 35.0%
TCAAATAAACCAACCCAAAC+AGG + chr5_2:11014104-11014123 None:intergenic 35.0%
GTATGTGATGAGAGTTTACT+GGG - chr5_2:11014324-11014343 Msa0756630:intron 35.0%
CTAGATGATGTTGTCTACTT+CGG - chr5_2:11014431-11014450 Msa0756630:intron 35.0%
TCTTGTTCTCACTTACTATG+AGG - chr5_2:11014652-11014671 Msa0756630:intron 35.0%
! ACCTGTTTTCCGAAATTGAA+CGG + chr5_2:11014714-11014733 None:intergenic 35.0%
! TTGTTGTTGTGATTGTTGTG+TGG - chr5_2:11014749-11014768 Msa0756630:intron 35.0%
AACTGAAAATTTCAGTCCAC+AGG + chr5_2:11014909-11014928 None:intergenic 35.0%
AATGTGAAGCTACATGTTTG+GGG + chr5_2:11014959-11014978 None:intergenic 35.0%
GACTGATTAAGATTGCTTTG+AGG - chr5_2:11015014-11015033 Msa0756630:intron 35.0%
TGGATGTTCAATTCCCTATT+GGG - chr5_2:11015058-11015077 Msa0756630:intron 35.0%
ATCCAAATAGTTGCCCAATA+GGG + chr5_2:11015074-11015093 None:intergenic 35.0%
CCCTTTCTTTCTATATAGGA+AGG - chr5_2:11015170-11015189 Msa0756630:CDS 35.0%
GCCTTCCTATATAGAAAGAA+AGG + chr5_2:11015174-11015193 None:intergenic 35.0%
CCCCATCTGCAAATAATAAA+AGG + chr5_2:11015266-11015285 None:intergenic 35.0%
TAAAATTGGCACAGTACAAC+TGG + chr5_2:11015509-11015528 None:intergenic 35.0%
! GAAGCTCTAATAGGAAGAGT+AGG + chr5_2:11013449-11013468 None:intergenic 40.0%
! AACTCATCGGAAGCTCTAAT+AGG + chr5_2:11013458-11013477 None:intergenic 40.0%
ACTTCGTTCTCGTGTGATTA+AGG - chr5_2:11013652-11013671 Msa0756630:three_prime_UTR 40.0%
AGAACCATAGAATGTGGTTG+AGG + chr5_2:11014062-11014081 None:intergenic 40.0%
AGGAAGAGAACCATAGAATG+TGG + chr5_2:11014068-11014087 None:intergenic 40.0%
! GTTCTCTTCCTTTTCTTCAC+AGG - chr5_2:11014077-11014096 Msa0756630:intron 40.0%
AGACTGTTTCAGAGAGCTTA+TGG - chr5_2:11014151-11014170 Msa0756630:intron 40.0%
CGTATGTGATGAGAGTTTAC+TGG - chr5_2:11014323-11014342 Msa0756630:intron 40.0%
ATCCAAAGAGGACCATAGTT+TGG - chr5_2:11014363-11014382 Msa0756630:intron 40.0%
TCCAAAGAGGACCATAGTTT+GGG - chr5_2:11014364-11014383 Msa0756630:intron 40.0%
AATGTGGAAGACCCAAACTA+TGG + chr5_2:11014378-11014397 None:intergenic 40.0%
GTAGACAACATCATCTAGGT+AGG + chr5_2:11014429-11014448 None:intergenic 40.0%
CGAAGTAGACAACATCATCT+AGG + chr5_2:11014433-11014452 None:intergenic 40.0%
! GATGTTGTCTACTTCGGTTT+TGG - chr5_2:11014437-11014456 Msa0756630:intron 40.0%
! AGCTGCTCAATTTTCCTTTG+TGG - chr5_2:11014524-11014543 Msa0756630:intron 40.0%
! GCTGCTCAATTTTCCTTTGT+GGG - chr5_2:11014525-11014544 Msa0756630:intron 40.0%
CGTTTGATATTCCAGTCTTC+TGG - chr5_2:11014604-11014623 Msa0756630:intron 40.0%
TGTTCTCACTTACTATGAGG+AGG - chr5_2:11014655-11014674 Msa0756630:intron 40.0%
ACCGTTCAATTTCGGAAAAC+AGG - chr5_2:11014710-11014729 Msa0756630:intron 40.0%
CTAGCGTATATGTGAACATC+TGG - chr5_2:11015038-11015057 Msa0756630:intron 40.0%
CTGGATGTTCAATTCCCTAT+TGG - chr5_2:11015057-11015076 Msa0756630:intron 40.0%
TTCCCTATTGGGCAACTATT+TGG - chr5_2:11015069-11015088 Msa0756630:intron 40.0%
CATCCAAATAGTTGCCCAAT+AGG + chr5_2:11015075-11015094 None:intergenic 40.0%
AACTATTTGGATGCCTTCGA+TGG - chr5_2:11015082-11015101 Msa0756630:intron 40.0%
! ACGCGCAAATTGGATTGGAT+CGG + chr5_2:11013098-11013117 None:intergenic 45.0%
! AGCCTTCTAAGAAGTAGACG+CGG + chr5_2:11013325-11013344 None:intergenic 45.0%
GGAAACCGATGAGAAGATTG+AGG + chr5_2:11013382-11013401 None:intergenic 45.0%
AACGAAAGGACGGAACTCAT+CGG + chr5_2:11013471-11013490 None:intergenic 45.0%
TGCAAGCTAGATTGTGCATG+CGG - chr5_2:11013757-11013776 Msa0756630:intron 45.0%
GAGTCCTCAACCACATTCTA+TGG - chr5_2:11014055-11014074 Msa0756630:intron 45.0%
AAACAGGCCCTGTGAAGAAA+AGG + chr5_2:11014088-11014107 None:intergenic 45.0%
! TTTTCTTCACAGGGCCTGTT+TGG - chr5_2:11014087-11014106 Msa0756630:intron 45.0%
TTTCTTCACAGGGCCTGTTT+GGG - chr5_2:11014088-11014107 Msa0756630:intron 45.0%
ACCCAAACTATGGTCCTCTT+TGG + chr5_2:11014368-11014387 None:intergenic 45.0%
CACTTAGTAAGGTCTGCAGA+AGG - chr5_2:11014488-11014507 Msa0756630:intron 45.0%
! CTCAATTTTCCTTTGTGGGC+AGG - chr5_2:11014529-11014548 Msa0756630:intron 45.0%
GCCTATACTCCTCTTCTACT+GGG - chr5_2:11014626-11014645 Msa0756630:intron 45.0%
! ACCCAGTAGAAGAGGAGTAT+AGG + chr5_2:11014630-11014649 None:intergenic 45.0%
TATACTCCTCTTCTACTGGG+TGG - chr5_2:11014629-11014648 Msa0756630:intron 45.0%
! AGAAAGCACAAGTCTTCCTG+TGG - chr5_2:11014890-11014909 Msa0756630:intron 45.0%
TATTTGGATGCCTTCGATGG+CGG - chr5_2:11015085-11015104 Msa0756630:intron 45.0%
AATAAAAGGGACTGCTGCAC+AGG + chr5_2:11015252-11015271 None:intergenic 45.0%
ATTGGCACAGTACAACTGGT+TGG + chr5_2:11015505-11015524 None:intergenic 45.0%
ACGATCACTTGATACAACCG+AGG - chr5_2:11015550-11015569 Msa0756630:five_prime_UTR 45.0%
CGATCACTTGATACAACCGA+GGG - chr5_2:11015551-11015570 Msa0756630:five_prime_UTR 45.0%
GATCACTTGATACAACCGAG+GGG - chr5_2:11015552-11015571 Msa0756630:five_prime_UTR 45.0%
TTGGATCGGATGTAACGTGC+TGG + chr5_2:11013084-11013103 None:intergenic 50.0%
CCATCACGCGCAAATTGGAT+TGG + chr5_2:11013103-11013122 None:intergenic 50.0%
CCAATCCAATTTGCGCGTGA+TGG - chr5_2:11013100-11013119 Msa0756630:three_prime_UTR 50.0%
TTCCGCTGGGGAAATCTCTT+CGG + chr5_2:11013180-11013199 None:intergenic 50.0%
TAGTATTGCGGTTTCCGCTG+GGG + chr5_2:11013192-11013211 None:intergenic 50.0%
GTAGTATTGCGGTTTCCGCT+GGG + chr5_2:11013193-11013212 None:intergenic 50.0%
TGTAGTATTGCGGTTTCCGC+TGG + chr5_2:11013194-11013213 None:intergenic 50.0%
! ACCGCGATGGATAGGGTTTT+CGG - chr5_2:11013277-11013296 Msa0756630:three_prime_UTR 50.0%
ACCGAAAACCCTATCCATCG+CGG + chr5_2:11013281-11013300 None:intergenic 50.0%
! CTTCTAAGAAGTAGACGCGG+AGG + chr5_2:11013322-11013341 None:intergenic 50.0%
CTCCGCGTCTACTTCTTAGA+AGG - chr5_2:11013320-11013339 Msa0756630:three_prime_UTR 50.0%
GGCTTCTACGTCGTTACGTA+CGG - chr5_2:11013341-11013360 Msa0756630:three_prime_UTR 50.0%
TACGTCGTTACGTACGGTCT+TGG - chr5_2:11013347-11013366 Msa0756630:three_prime_UTR 50.0%
AGAACTTGAACTCAGGGAGG+CGG + chr5_2:11013496-11013515 None:intergenic 50.0%
ACCAGAACTTGAACTCAGGG+AGG + chr5_2:11013499-11013518 None:intergenic 50.0%
! AGGAGTATAGGCCAGAAGAC+TGG + chr5_2:11014618-11014637 None:intergenic 50.0%
GGCCTATACTCCTCTTCTAC+TGG - chr5_2:11014625-11014644 Msa0756630:intron 50.0%
ACAAGACCACCCAGTAGAAG+AGG + chr5_2:11014638-11014657 None:intergenic 50.0%
! CAATTTGCGCGTGATGGAGC+CGG - chr5_2:11013106-11013125 Msa0756630:three_prime_UTR 55.0%
! AATCTCTTCGGTGGCGGTTC+CGG + chr5_2:11013168-11013187 None:intergenic 55.0%
TGGGGAAATCTCTTCGGTGG+CGG + chr5_2:11013174-11013193 None:intergenic 55.0%
CACCGAAGAGATTTCCCCAG+CGG - chr5_2:11013175-11013194 Msa0756630:three_prime_UTR 55.0%
ATCCATCGCGGTAGCACGTA+CGG + chr5_2:11013269-11013288 None:intergenic 55.0%
TACGTGCTACCGCGATGGAT+AGG - chr5_2:11013269-11013288 Msa0756630:three_prime_UTR 55.0%
ACGTGCTACCGCGATGGATA+GGG - chr5_2:11013270-11013289 Msa0756630:three_prime_UTR 55.0%
!! GATGGCGGGATCAACTTGAG+GGG + chr5_2:11013408-11013427 None:intergenic 55.0%
!! CGATGGCGGGATCAACTTGA+GGG + chr5_2:11013409-11013428 None:intergenic 55.0%
AGGAAGAGTAGGACCGTCAG+AGG + chr5_2:11013438-11013457 None:intergenic 55.0%
! GCCTCCCTGAGTTCAAGTTC+TGG - chr5_2:11013495-11013514 Msa0756630:three_prime_UTR 55.0%
TTCACAGGGCCTGTTTGGGT+TGG - chr5_2:11014092-11014111 Msa0756630:intron 55.0%
GATCGAGTACCTGCCCACAA+AGG + chr5_2:11014541-11014560 None:intergenic 55.0%
! ATGCCTTCGATGGCGGCTTT+GGG - chr5_2:11015092-11015111 Msa0756630:intron 55.0%
!! TGGCGGCTTTGGGAAGATGT+TGG - chr5_2:11015102-11015121 Msa0756630:CDS 55.0%
!! GGCGGCTTTGGGAAGATGTT+GGG - chr5_2:11015103-11015122 Msa0756630:CDS 55.0%
CGGCTCCATCACGCGCAAAT+TGG + chr5_2:11013108-11013127 None:intergenic 60.0%
CGCTGGGGAAATCTCTTCGG+TGG + chr5_2:11013177-11013196 None:intergenic 60.0%
TCCATCGCGGTAGCACGTAC+GGG + chr5_2:11013268-11013287 None:intergenic 60.0%
CGGGATCAACTTGAGGGGAG+AGG + chr5_2:11013403-11013422 None:intergenic 60.0%
!! GCGATGGCGGGATCAACTTG+AGG + chr5_2:11013410-11013429 None:intergenic 60.0%
! AGTAGGACCGTCAGAGGCGT+CGG + chr5_2:11013432-11013451 None:intergenic 60.0%
GGGCAGGTACTCGATCACAG+TGG - chr5_2:11014545-11014564 Msa0756630:intron 60.0%
! GATGCCTTCGATGGCGGCTT+TGG - chr5_2:11015091-11015110 Msa0756630:intron 60.0%
CTTCCCAAAGCCGCCATCGA+AGG + chr5_2:11015098-11015117 None:intergenic 60.0%
!! ACGACGACTGCTGGTGCTGC+CGG + chr5_2:11013128-11013147 None:intergenic 65.0%
CCATCGCGGTAGCACGTACG+GGG + chr5_2:11013267-11013286 None:intergenic 65.0%
GGAGGCGGCGAACGAAAGGA+CGG + chr5_2:11013481-11013500 None:intergenic 65.0%
TCAGGGAGGCGGCGAACGAA+AGG + chr5_2:11013485-11013504 None:intergenic 65.0%
CCAGCAGTCGTCGTCGACGC+CGG - chr5_2:11013134-11013153 Msa0756630:three_prime_UTR 70.0%
! TTCGGTGGCGGTTCCGGTGC+CGG + chr5_2:11013162-11013181 None:intergenic 70.0%
CCCCGTACGTGCTACCGCGA+TGG - chr5_2:11013264-11013283 Msa0756630:three_prime_UTR 70.0%
!! TCAGAGGCGTCGGCGATGGC+GGG + chr5_2:11013422-11013441 None:intergenic 70.0%
!! GTCAGAGGCGTCGGCGATGG+CGG + chr5_2:11013423-11013442 None:intergenic 70.0%
GCCATCGCCGACGCCTCTGA+CGG - chr5_2:11013422-11013441 Msa0756630:three_prime_UTR 70.0%
!! ACCGTCAGAGGCGTCGGCGA+TGG + chr5_2:11013426-11013445 None:intergenic 70.0%
!! CCGGCGTCGACGACGACTGC+TGG + chr5_2:11013137-11013156 None:intergenic 75.0%
GTCGTCGTCGACGCCGGCAC+CGG - chr5_2:11013140-11013159 Msa0756630:three_prime_UTR 75.0%
!!! GTCGACGCCGGCACCGGCAC+CGG - chr5_2:11013146-11013165 Msa0756630:three_prime_UTR 80.0%
!!! GGCGGTTCCGGTGCCGGTGC+CGG + chr5_2:11013156-11013175 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 11013032 11015581 11013032 ID=Msa0756630;Name=Msa0756630
chr5_2 mRNA 11013032 11015581 11013032 ID=Msa0756630-mRNA-1;Parent=Msa0756630;Name=Msa0756630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|1|1|3|664|211
chr5_2 exon 11013032 11013752 11013032 ID=Msa0756630-mRNA-1:exon:4978;Parent=Msa0756630-mRNA-1
chr5_2 exon 11013882 11014062 11013882 ID=Msa0756630-mRNA-1:exon:4977;Parent=Msa0756630-mRNA-1
chr5_2 exon 11015097 11015581 11015097 ID=Msa0756630-mRNA-1:exon:4976;Parent=Msa0756630-mRNA-1
chr5_2 five_prime_UTR 11015495 11015581 11015495 ID=Msa0756630-mRNA-1:five_prime_utr;Parent=Msa0756630-mRNA-1
chr5_2 CDS 11015097 11015494 11015097 ID=Msa0756630-mRNA-1:cds;Parent=Msa0756630-mRNA-1
chr5_2 CDS 11013882 11014062 11013882 ID=Msa0756630-mRNA-1:cds;Parent=Msa0756630-mRNA-1
chr5_2 CDS 11013696 11013752 11013696 ID=Msa0756630-mRNA-1:cds;Parent=Msa0756630-mRNA-1
chr5_2 three_prime_UTR 11013032 11013695 11013032 ID=Msa0756630-mRNA-1:three_prime_utr;Parent=Msa0756630-mRNA-1
Gene Sequence

>Msa0756630

ATGGAGCCGGCAGCACCAGCAGTCGTCGTCGACGCCGGCACCGGCACCGGAACCGCCACCGAAGAGATTTCCCCAGCGGAAACCGCAATACTACAATTGAAACAAGCGATATGGCAACAATATCAACACGTGCTAGACAAAACAACCCCGTACGTGCTACCGCGATGGATAGGGTTTTCGGTCGTCGCTTTCATCTACATCCTCCGCGTCTACTTCTTAGAAGGCTTCTACGTCGTTACGTACGGTCTTGGCATTTACATCCTCAATCTTCTCATCGGTTTCCTCTCCCCTCAAGTTGATCCCGCCATCGCCGACGCCTCTGACGGTCCTACTCTTCCTATTAGAGCTTCCGATGAGTTCCGTCCTTTCGTTCGCCGCCTCCCTGAGTTCAAGTTCTGGTACTCGATCACAGTGGCATTTTGCATTGCAATTGTGATGACTTTCTTTAGTGCGTTTGATATTCCAGTCTTCTGGCCTATACTCCTCTTCTACTGGGTGGTCTTGTTCTCACTTACTATGAGGAGGCAGATATCACATATGATCAAATACAGATATGTACCGTTCAATTTCGGAAAACAGCACTATCAGAGAAAGAGAGCATCAGAAGAAGAAAGCACAAGTCTTCCTGTGGACTGA

Protein sequence

>Msa0756630

MEPAAPAVVVDAGTGTGTATEEISPAETAILQLKQAIWQQYQHVLDKTTPYVLPRWIGFSVVAFIYILRVYFLEGFYVVTYGLGIYILNLLIGFLSPQVDPAIADASDGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFCIAIVMTFFSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGKQHYQRKRASEEESTSLPVD*