AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0243710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243710 MtrunA17_Chr2g0297021 95.946 296 1 1 1 296 1 285 0.0 582
Msa0243710 MtrunA17_Chr3g0120311 79.688 256 37 1 13 268 15 255 8.69e-154 432
Msa0243710 MtrunA17_Chr4g0032051 82.258 186 19 3 111 295 20 192 3.65e-93 274
Msa0243710 MtrunA17_Chr4g0032041 98.630 73 1 0 66 138 1 73 6.27e-47 156
Msa0243710 MtrunA17_Chr4g0032031 83.051 59 9 1 1 59 1 58 3.71e-29 105
Msa0243710 MtrunA17_Chr7g0245591 40.000 145 79 3 11 151 50 190 5.28e-28 112
Msa0243710 MtrunA17_Chr7g0245591 36.957 92 54 2 18 107 258 347 4.89e-12 65.9
Msa0243710 MtrunA17_Chr8g0389111 41.379 145 77 3 16 156 65 205 3.47e-26 106
Msa0243710 MtrunA17_Chr8g0389111 35.484 155 93 4 18 169 256 406 5.51e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243710 AT2G32260.1 75.540 278 52 3 12 288 31 293 8.66e-153 431
Msa0243710 AT2G32260.2 74.194 248 48 3 42 288 12 244 5.19e-131 374
Msa0243710 AT2G38670.1 38.272 162 89 4 14 171 53 207 2.40e-27 110
Msa0243710 AT2G38670.1 32.692 156 100 3 18 170 257 410 3.27e-17 81.6

Find 88 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTATTGGAAAATTTA+AGG 0.163999 2_2:-21028603 Msa0243710:CDS
TCCAACCATATTCCTTCTTT+TGG 0.194800 2_2:-21026833 Msa0243710:three_prime_UTR
TTGATCTAAAAGCTGAAATT+TGG 0.212003 2_2:-21026796 Msa0243710:three_prime_UTR
CTTATACAGGTTAAGGCTAT+TGG 0.232230 2_2:-21028614 Msa0243710:intron
AATGATCCATTGCAAAATTA+AGG 0.263872 2_2:-21026571 Msa0243710:three_prime_UTR
ATTGCAAAATTAAGGAATAT+AGG 0.299296 2_2:-21026563 Msa0243710:three_prime_UTR
TGAATCCAAAAGAAGGAATA+TGG 0.337760 2_2:+21026828 None:intergenic
TATGGTAATGGTTCAGAATC+TGG 0.342345 2_2:+21027102 None:intergenic
GTTCCTATCTGCACATAGTT+TGG 0.355935 2_2:+21027524 None:intergenic
CCAAACACATATCTCCTTGT+TGG 0.358023 2_2:-21031602 Msa0243710:CDS
TTGCAAAATTAAGGAATATA+GGG 0.371150 2_2:-21026562 Msa0243710:three_prime_UTR
TTGATTACCCACGGCACATC+TGG 0.373662 2_2:+21030187 None:intergenic
CCAGTATGTAATGCGTAATC+TGG 0.373754 2_2:-21028516 Msa0243710:CDS
CTTTGCTTGTTCAAGAGAAC+GGG 0.376996 2_2:+21032232 None:intergenic
AATTCAAATTCAAGGAGATA+TGG 0.384692 2_2:-21026902 Msa0243710:three_prime_UTR
CCAGATTACGCATTACATAC+TGG 0.416241 2_2:+21028516 None:intergenic
CCATCAGCATAAACACGAAC+AGG 0.422644 2_2:+21032284 None:intergenic
TGAAGAAGGATGCCACAAAA+TGG 0.436374 2_2:-21027420 Msa0243710:intron
GGAACAGTGAGAAGAATTGC+TGG 0.441857 2_2:-21027506 Msa0243710:CDS
ATTTACGATCTCTTTCACTT+TGG 0.443426 2_2:-21032260 Msa0243710:CDS
ACAATTCATATCACTTTGAC+AGG 0.447299 2_2:+21026978 None:intergenic
AAGCTGAAATTTGGCTGCAT+TGG 0.447683 2_2:-21026787 Msa0243710:three_prime_UTR
AATGCAGATCGATTAGTTGC+TGG 0.449023 2_2:-21027458 Msa0243710:CDS
CAGTTACACAGACATAGTTA+TGG 0.457395 2_2:+21027084 None:intergenic
TTTGGCTGCATTGGCTGTGC+GGG 0.461453 2_2:-21026778 Msa0243710:three_prime_UTR
CCAACAAGGAGATATGTGTT+TGG 0.467300 2_2:+21031602 None:intergenic
CCTGTTCGTGTTTATGCTGA+TGG 0.469877 2_2:-21032284 Msa0243710:CDS
ACATAATTTGTCTTTCTACA+TGG 0.473138 2_2:-21027015 Msa0243710:three_prime_UTR
CACAGACATAGTTATGGTAA+TGG 0.474571 2_2:+21027090 None:intergenic
TATGCAATGCAATGTTGGTT+TGG 0.481284 2_2:-21027038 Msa0243710:three_prime_UTR
ATCTCTTCTTTATGATGAGT+GGG 0.482968 2_2:-21027208 Msa0243710:CDS
TGTGCCGTGGGTAATCAATC+AGG 0.490691 2_2:-21030182 Msa0243710:CDS
GAACAAGATGACTCTGAAGT+TGG 0.491101 2_2:-21032320 Msa0243710:CDS
TTCAATGTTCAGAGTCAAAA+CGG 0.491199 2_2:+21032371 None:intergenic
GCAAGAGACTGTAGGAAAGA+AGG 0.492142 2_2:-21028255 Msa0243710:intron
TTTCTCGAGATGTTTGAAGA+AGG 0.505057 2_2:-21027434 Msa0243710:CDS
AGGTAACAAATTCAAATTCA+AGG 0.506099 2_2:-21026910 Msa0243710:three_prime_UTR
AATCTCTTCTTTATGATGAG+TGG 0.507907 2_2:-21027209 Msa0243710:CDS
TACAATCTGAATCCAAAAGA+AGG 0.510875 2_2:+21026821 None:intergenic
TATGCTGATACAAGTGGAGC+TGG 0.511409 2_2:-21028936 Msa0243710:CDS
AGAGAATCTAGGTTGGAACT+TGG 0.516713 2_2:+21026872 None:intergenic
CTTGTTCAAGAGAACGGGCA+TGG 0.517970 2_2:+21032237 None:intergenic
AAGCCAAACTATGTGCAGAT+AGG 0.520262 2_2:-21027527 Msa0243710:CDS
TCTTTGCTTGTTCAAGAGAA+CGG 0.524315 2_2:+21032231 None:intergenic
TTTATAGTCGTGATCTTCCA+TGG 0.526552 2_2:+21026717 None:intergenic
TGCACCATGCAACCGTTGTA+CGG 0.527175 2_2:+21026937 None:intergenic
CATATAAACTCCAGTATACC+AGG 0.530883 2_2:-21026508 Msa0243710:three_prime_UTR
TGCACTGTTGGAGAGAATCT+AGG 0.532722 2_2:+21026861 None:intergenic
TCCAAAAGAAGGAATATGGT+TGG 0.543366 2_2:+21026832 None:intergenic
ATCTTCCATGGCACAAGACT+AGG 0.556954 2_2:+21026729 None:intergenic
CATAGTTATGCTGATACAAG+TGG 0.557570 2_2:-21028942 Msa0243710:intron
TGAGATCACACACAAGTACA+AGG 0.560848 2_2:-21031567 Msa0243710:CDS
GAAAAGATTGAGAATGAACA+TGG 0.563205 2_2:-21028312 Msa0243710:CDS
GGATCGTGGTTATTCAAGAA+AGG 0.563355 2_2:-21028495 Msa0243710:CDS
GGTTGGACGGACTGCACTGT+TGG 0.568445 2_2:+21026849 None:intergenic
AAGGAAACAAAGAGGACTGA+AGG 0.570979 2_2:-21028584 Msa0243710:CDS
CTGGGATGAACCGTACTGAA+TGG 0.573855 2_2:-21027487 Msa0243710:CDS
TGGGATGAACCGTACTGAAT+GGG 0.582067 2_2:-21027486 Msa0243710:CDS
TATCATAATGAGAATCATCA+AGG 0.585536 2_2:-21028546 Msa0243710:CDS
AAGTTATTCCAGATGTGCCG+TGG 0.587410 2_2:-21030195 Msa0243710:CDS
ACAACCGTACAACGGTTGCA+TGG 0.589259 2_2:-21026941 Msa0243710:three_prime_UTR
AACTCCTGATTGATTACCCA+CGG 0.589451 2_2:+21030178 None:intergenic
AAGAAACAGCAAGAGACTGT+AGG 0.592810 2_2:-21028263 Msa0243710:CDS
TCGTATATGCAATGCAATGT+TGG 0.595454 2_2:-21027043 Msa0243710:three_prime_UTR
AAAATTAAGGAATATAGGGT+AGG 0.597493 2_2:-21026558 Msa0243710:three_prime_UTR
TGATACAAGTGGAGCTGGAA+AGG 0.599993 2_2:-21028931 Msa0243710:CDS
GCTAGGTGTTAGCTATGTCA+AGG 0.608221 2_2:-21028471 Msa0243710:intron
ATTGGCTGTGCGGGTTGTAG+AGG 0.608347 2_2:-21026769 Msa0243710:three_prime_UTR
CAAGCATAAAATTGACTATG+TGG 0.611838 2_2:-21030149 Msa0243710:CDS
TATGACCTAGTCTTGTGCCA+TGG 0.613393 2_2:-21026734 Msa0243710:three_prime_UTR
GAAAATTTAAGGAAACAAAG+AGG 0.614590 2_2:-21028592 Msa0243710:CDS
CAGAATTCAAGAACAGCTGA+AGG 0.615936 2_2:-21027244 Msa0243710:CDS
GAACAGTGAGAAGAATTGCT+GGG 0.618852 2_2:-21027505 Msa0243710:CDS
AAAGAAGGAATATGGTTGGA+CGG 0.619436 2_2:+21026836 None:intergenic
CATCACTGCAGCATCCAACA+AGG 0.622451 2_2:+21031588 None:intergenic
GGTTATTCAAGAAAGGAGCT+AGG 0.624474 2_2:-21028488 Msa0243710:CDS
ATTTGGCTGCATTGGCTGTG+CGG 0.630562 2_2:-21026779 Msa0243710:three_prime_UTR
CTGTTGGAGAGAATCTAGGT+TGG 0.635628 2_2:+21026865 None:intergenic
AAAAGATTGAGAATGAACAT+GGG 0.642829 2_2:-21028311 Msa0243710:CDS
TTTGCAATGGATCATTGATG+TGG 0.652803 2_2:+21026578 None:intergenic
GATTCTCATTATGATATCAG+AGG 0.655348 2_2:+21028553 None:intergenic
ATATGAATTGTGATCTAACG+AGG 0.663011 2_2:-21026966 Msa0243710:three_prime_UTR
AGTTATTCCAGATGTGCCGT+GGG 0.663969 2_2:-21030194 Msa0243710:CDS
ACGGTTGCATGGTGCAACAG+AGG 0.674103 2_2:-21026930 Msa0243710:three_prime_UTR
GTAATGCGTAATCTGGATCG+TGG 0.679784 2_2:-21028509 Msa0243710:CDS
ACGAGGGTACAACCGTACAA+CGG 0.680986 2_2:-21026949 Msa0243710:three_prime_UTR
GAGATCACACACAAGTACAA+GGG 0.705592 2_2:-21031566 Msa0243710:CDS
TATGAATTGTGATCTAACGA+GGG 0.744407 2_2:-21026965 Msa0243710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAACATAAAAAAGA+GGG + chr2_2:21028064-21028083 None:intergenic 10.0%
!! AATAAATAAACATAAAAAAG+AGG + chr2_2:21028065-21028084 None:intergenic 10.0%
!! TTTATATGACTTATTTAAAT+TGG - chr2_2:21028637-21028656 Msa0243710:intron 10.0%
!! AAAAAAAAACAGAAACAAAA+AGG - chr2_2:21026546-21026565 Msa0243710:three_prime_UTR 15.0%
!!! GTTTTTTGTTTTTGTTTTTA+AGG - chr2_2:21026959-21026978 Msa0243710:three_prime_UTR 15.0%
!!! TTTTTTTTGTTGTGTTTTTA+AGG - chr2_2:21026986-21027005 Msa0243710:three_prime_UTR 15.0%
!!! TTTTTGTTTTGTTGTTTTTA+AGG - chr2_2:21027016-21027035 Msa0243710:three_prime_UTR 15.0%
!!! TTGTTTTTAAGGTTTTTTTT+TGG - chr2_2:21027027-21027046 Msa0243710:three_prime_UTR 15.0%
!! ATAATTTAACCAAAGAAAAA+AGG + chr2_2:21027497-21027516 None:intergenic 15.0%
!!! TATTTCATCTAGTTATATTT+TGG - chr2_2:21028536-21028555 Msa0243710:CDS 15.0%
!!! AACAAAAGAAAACAAATTTT+TGG + chr2_2:21028579-21028598 None:intergenic 15.0%
!! ATTTAATTCCAGTAAAAAAA+AGG + chr2_2:21029259-21029278 None:intergenic 15.0%
!!! ATTTTGTTGAAAATGTTATT+TGG - chr2_2:21029506-21029525 Msa0243710:intron 15.0%
!! TCATATACAACTAAATTAAA+AGG + chr2_2:21030098-21030117 None:intergenic 15.0%
!! AAAGTTTAAACAAATAAGAA+AGG + chr2_2:21030215-21030234 None:intergenic 15.0%
!! AAATACATAGTTTAATTGTT+TGG - chr2_2:21030846-21030865 Msa0243710:intron 15.0%
!! AAAATGAAATTGAGAAAGAT+GGG + chr2_2:21026834-21026853 None:intergenic 20.0%
!! AAAAATGAAATTGAGAAAGA+TGG + chr2_2:21026835-21026854 None:intergenic 20.0%
!! GGACTAAATATCATAAAAAA+GGG + chr2_2:21026871-21026890 None:intergenic 20.0%
!! TGGACTAAATATCATAAAAA+AGG + chr2_2:21026872-21026891 None:intergenic 20.0%
!! TAAAAATCCTAATTGCAAAT+GGG + chr2_2:21027109-21027128 None:intergenic 20.0%
!! ATAAAAATCCTAATTGCAAA+TGG + chr2_2:21027110-21027129 None:intergenic 20.0%
!!! ATTTGCAATTAGGATTTTTA+TGG - chr2_2:21027109-21027128 Msa0243710:three_prime_UTR 20.0%
!!! AATTAGGATTTTTATGGTTT+TGG - chr2_2:21027115-21027134 Msa0243710:three_prime_UTR 20.0%
!!! TTTCTTTTTCCTTTTTTCTT+TGG - chr2_2:21027485-21027504 Msa0243710:CDS 20.0%
!!! CTATTATAGGTTTTACATTT+CGG - chr2_2:21027869-21027888 Msa0243710:intron 20.0%
!!! GAAATTTTTCATGTTATAAC+AGG + chr2_2:21028134-21028153 None:intergenic 20.0%
!! TAAGTAAATAGAAAATGAGA+AGG + chr2_2:21028693-21028712 None:intergenic 20.0%
!! ATAAAAAAGAGAATTATAGC+TGG + chr2_2:21028881-21028900 None:intergenic 20.0%
!!! GAAACAAGAAAACTTTTAAA+AGG - chr2_2:21029034-21029053 Msa0243710:intron 20.0%
!!! AATTACTTCCTTTTTTTTAC+TGG - chr2_2:21029248-21029267 Msa0243710:intron 20.0%
!! AAATATATAGTCAATCATGT+AGG + chr2_2:21029440-21029459 None:intergenic 20.0%
!!! ATATTTTTAAGTGAATAGTG+TGG - chr2_2:21029454-21029473 Msa0243710:intron 20.0%
!!! CTTTTTCTTAAATTTACGTA+AGG + chr2_2:21029548-21029567 None:intergenic 20.0%
!! TAATATAGTAGTAGTGATAA+TGG + chr2_2:21029850-21029869 None:intergenic 20.0%
!! AACCTGTATAAGAAATTAAT+AGG + chr2_2:21030345-21030364 None:intergenic 20.0%
!! TTAATTTCTTATACAGGTTA+AGG - chr2_2:21030346-21030365 Msa0243710:intron 20.0%
!! TGAACTATCTTATTATAGAT+CGG - chr2_2:21030750-21030769 Msa0243710:intron 20.0%
!! ATGACCTAAATAGAATTTAT+AGG - chr2_2:21031054-21031073 Msa0243710:intron 20.0%
!! ATGTCCTATAAATTCTATTT+AGG + chr2_2:21031061-21031080 None:intergenic 20.0%
!! TAAATAGAATTTATAGGACA+TGG - chr2_2:21031060-21031079 Msa0243710:intron 20.0%
!! AAATAGAATTTATAGGACAT+GGG - chr2_2:21031061-21031080 Msa0243710:intron 20.0%
!!! CATCTTAAAGCTTATTTTTA+GGG + chr2_2:21031590-21031609 None:intergenic 20.0%
!!! TCATCTTAAAGCTTATTTTT+AGG + chr2_2:21031591-21031610 None:intergenic 20.0%
!! TGTGAAAAAAAATGTTTGAT+TGG - chr2_2:21032274-21032293 Msa0243710:CDS 20.0%
!!! TATATTCCTTAATTTTGCAA+TGG + chr2_2:21032405-21032424 None:intergenic 20.0%
!! ATTGCAAAATTAAGGAATAT+AGG - chr2_2:21032404-21032423 Msa0243710:five_prime_UTR 20.0%
!! TTGCAAAATTAAGGAATATA+GGG - chr2_2:21032405-21032424 Msa0243710:five_prime_UTR 20.0%
! TGAAATGAAGCAAAAGAAAA+AGG + chr2_2:21026786-21026805 None:intergenic 25.0%
! AACCCAAAAGAACAAAAAAT+GGG + chr2_2:21026897-21026916 None:intergenic 25.0%
! AAACCCAAAAGAACAAAAAA+TGG + chr2_2:21026898-21026917 None:intergenic 25.0%
!!! TTTGGTGTTGTTTATGATTT+TGG - chr2_2:21027045-21027064 Msa0243710:three_prime_UTR 25.0%
! AAAAAATTGAAGAGTTTGTG+CGG - chr2_2:21027698-21027717 Msa0243710:intron 25.0%
! TAATAGATTGATGAAGTGAA+CGG - chr2_2:21028279-21028298 Msa0243710:CDS 25.0%
! AAAAGTAAACACGAGATTAT+AGG - chr2_2:21028317-21028336 Msa0243710:CDS 25.0%
! ATTATGTCTGGTCAAAATAT+TGG - chr2_2:21028462-21028481 Msa0243710:intron 25.0%
!!! TATCCTCTTTTAATTGCTTA+CGG - chr2_2:21028491-21028510 Msa0243710:CDS 25.0%
! AACTAGATGAAATAACATGA+CGG + chr2_2:21028530-21028549 None:intergenic 25.0%
!!! TTCATCTAGTTATATTTTGG+AGG - chr2_2:21028539-21028558 Msa0243710:CDS 25.0%
!!! TCATCTAGTTATATTTTGGA+GGG - chr2_2:21028540-21028559 Msa0243710:CDS 25.0%
! TTACTTATTTGCTTTCACTA+TGG - chr2_2:21028706-21028725 Msa0243710:intron 25.0%
!! TTATAAGCGTTCTAAATTTG+TGG - chr2_2:21028902-21028921 Msa0243710:intron 25.0%
! AAAAATATCATGTGAGAAGA+GGG + chr2_2:21029395-21029414 None:intergenic 25.0%
! AAAAAATATCATGTGAGAAG+AGG + chr2_2:21029396-21029415 None:intergenic 25.0%
!!! TCTTCTCACATGATATTTTT+TGG - chr2_2:21029395-21029414 Msa0243710:intron 25.0%
!!! CTTCTCACATGATATTTTTT+GGG - chr2_2:21029396-21029415 Msa0243710:intron 25.0%
! ATCCACAAAGTTCTTATATA+TGG - chr2_2:21029966-21029985 Msa0243710:intron 25.0%
! CTATGGTAACAAAATAACAA+AGG + chr2_2:21030010-21030029 None:intergenic 25.0%
! TAATCAAAGAGACAAATTGT+TGG + chr2_2:21030169-21030188 None:intergenic 25.0%
! TGCCTATTAATTTCTTATAC+AGG - chr2_2:21030340-21030359 Msa0243710:intron 25.0%
! TAAGGCTATTGGAAAATTTA+AGG - chr2_2:21030364-21030383 Msa0243710:intron 25.0%
! GAAAATTTAAGGAAACAAAG+AGG - chr2_2:21030375-21030394 Msa0243710:intron 25.0%
! TATCATAATGAGAATCATCA+AGG - chr2_2:21030421-21030440 Msa0243710:intron 25.0%
!! ATACATGATCTCTTATTTGT+AGG - chr2_2:21030631-21030650 Msa0243710:intron 25.0%
! AAAAGATTGAGAATGAACAT+GGG - chr2_2:21030656-21030675 Msa0243710:intron 25.0%
! GATCTATAATAAGATAGTTC+AGG + chr2_2:21030751-21030770 None:intergenic 25.0%
! TCTATTTAGGTCATATTTCT+AGG + chr2_2:21031048-21031067 None:intergenic 25.0%
!!! GCGTAATCCATATTTTTATA+TGG - chr2_2:21031124-21031143 Msa0243710:intron 25.0%
! TCAGATGCCATATAAAAATA+TGG + chr2_2:21031134-21031153 None:intergenic 25.0%
! CAAATGTGTATCAAAAAACA+TGG + chr2_2:21031253-21031272 None:intergenic 25.0%
! ATCATTTCCTAGTAATTCAT+TGG + chr2_2:21031315-21031334 None:intergenic 25.0%
! AATGAATTACTAGGAAATGA+TGG - chr2_2:21031314-21031333 Msa0243710:intron 25.0%
! ATAGTGTCTTAATAATGCAA+AGG + chr2_2:21031412-21031431 None:intergenic 25.0%
! GAATCTAACAAGAAATTAAC+AGG + chr2_2:21031632-21031651 None:intergenic 25.0%
!! ACATAATTTGTCTTTCTACA+TGG - chr2_2:21031952-21031971 Msa0243710:intron 25.0%
! AGGTAACAAATTCAAATTCA+AGG - chr2_2:21032057-21032076 Msa0243710:intron 25.0%
! AATTCAAATTCAAGGAGATA+TGG - chr2_2:21032065-21032084 Msa0243710:intron 25.0%
!! AAATTTCAGCTTTTAGATCA+AGG + chr2_2:21032172-21032191 None:intergenic 25.0%
! TTGATCTAAAAGCTGAAATT+TGG - chr2_2:21032171-21032190 Msa0243710:intron 25.0%
!!! TTTTTTGCAAGCATTTTGAT+TGG - chr2_2:21032350-21032369 Msa0243710:five_prime_UTR 25.0%
! AATGATCCATTGCAAAATTA+AGG - chr2_2:21032396-21032415 Msa0243710:five_prime_UTR 25.0%
! AAAATTAAGGAATATAGGGT+AGG - chr2_2:21032409-21032428 Msa0243710:five_prime_UTR 25.0%
TTCAATGTTCAGAGTCAAAA+CGG + chr2_2:21026599-21026618 None:intergenic 30.0%
ATTTACGATCTCTTTCACTT+TGG - chr2_2:21026707-21026726 Msa0243710:three_prime_UTR 30.0%
ATGAAGCAAAAGAAAAAGGA+GGG + chr2_2:21026782-21026801 None:intergenic 30.0%
AATGAAGCAAAAGAAAAAGG+AGG + chr2_2:21026783-21026802 None:intergenic 30.0%
AAAAGAACAAAAAATGGGGT+TGG + chr2_2:21026892-21026911 None:intergenic 30.0%
!!! AACCCCATTTTTTGTTCTTT+TGG - chr2_2:21026891-21026910 Msa0243710:three_prime_UTR 30.0%
!!! ACCCCATTTTTTGTTCTTTT+GGG - chr2_2:21026892-21026911 Msa0243710:three_prime_UTR 30.0%
ACCCAAAAGAACAAAAAATG+GGG + chr2_2:21026896-21026915 None:intergenic 30.0%
!!! TTTTGTTCTTTTGGGTTTGT+TGG - chr2_2:21026900-21026919 Msa0243710:three_prime_UTR 30.0%
TTGATTTCCCATTTGCAATT+AGG - chr2_2:21027099-21027118 Msa0243710:three_prime_UTR 30.0%
!! TGATGAAAGTGTCTATGATT+TGG - chr2_2:21027140-21027159 Msa0243710:exon 30.0%
!!! GATTTGGTTTTTGTTCTTGT+TGG - chr2_2:21027156-21027175 Msa0243710:CDS 30.0%
TGTAGAATAGTAGATGTATC+AGG - chr2_2:21027579-21027598 Msa0243710:intron 30.0%
AAAAATTGAAGAGTTTGTGC+GGG - chr2_2:21027699-21027718 Msa0243710:intron 30.0%
! TTATAGGTTTTACATTTCGG+CGG - chr2_2:21027872-21027891 Msa0243710:intron 30.0%
TAAAGAATATGGTCGAGATT+TGG - chr2_2:21027905-21027924 Msa0243710:intron 30.0%
AAAAGAGGGAAAAGAAAATC+TGG + chr2_2:21028050-21028069 None:intergenic 30.0%
AAGTTTGATATCTGATGACA+TGG - chr2_2:21028108-21028127 Msa0243710:intron 30.0%
AAATTTCATCCTAACCAGTA+AGG - chr2_2:21028147-21028166 Msa0243710:intron 30.0%
AATTTCATCCTAACCAGTAA+GGG - chr2_2:21028148-21028167 Msa0243710:intron 30.0%
!! AATAGTCAACAGAAGTATCA+TGG + chr2_2:21028251-21028270 None:intergenic 30.0%
! ATCTTTAAAGATCGTGTTTG+CGG - chr2_2:21028380-21028399 Msa0243710:intron 30.0%
! TTCGTAATGTCAAAGTACTT+TGG - chr2_2:21028429-21028448 Msa0243710:intron 30.0%
ACTAGATGAAATAACATGAC+GGG + chr2_2:21028529-21028548 None:intergenic 30.0%
! ATAACCACTCGTAAGATTTT+AGG + chr2_2:21028606-21028625 None:intergenic 30.0%
AGGTCTAATATACAGTACTA+TGG + chr2_2:21028673-21028692 None:intergenic 30.0%
TATTTGCTTTCACTATGGAT+TGG - chr2_2:21028711-21028730 Msa0243710:intron 30.0%
CAAGCATAAAATTGACTATG+TGG - chr2_2:21028818-21028837 Msa0243710:intron 30.0%
AGGAAATAGGAGACAAAAAA+GGG + chr2_2:21029130-21029149 None:intergenic 30.0%
AAGATCATAACAGAGGAAAT+AGG + chr2_2:21029143-21029162 None:intergenic 30.0%
GAAAACAAAGATCATAACAG+AGG + chr2_2:21029150-21029169 None:intergenic 30.0%
!!! CTGTTATGATCTTTGTTTTC+TGG - chr2_2:21029150-21029169 Msa0243710:intron 30.0%
!!! ATGATCTTTGTTTTCTGGTT+TGG - chr2_2:21029155-21029174 Msa0243710:intron 30.0%
TACTTCAAGAACCTTAAAAC+CGG - chr2_2:21029283-21029302 Msa0243710:intron 30.0%
CTTTAGTAGTCATTCAATTC+CGG + chr2_2:21029305-21029324 None:intergenic 30.0%
AGTTATGTGCAAACTATTCA+TGG - chr2_2:21029566-21029585 Msa0243710:intron 30.0%
TGTTATATTGCCTCAGTAAA+GGG - chr2_2:21029596-21029615 Msa0243710:intron 30.0%
TGTTAAACTCTGTTCTTCAT+AGG - chr2_2:21029634-21029653 Msa0243710:intron 30.0%
TCATAGTAGCTTCTTAAGTT+AGG - chr2_2:21029694-21029713 Msa0243710:intron 30.0%
! GTCATTTGTTGAATGAGTAT+AGG - chr2_2:21029716-21029735 Msa0243710:intron 30.0%
TCATACTTCTATTCAATCTG+TGG - chr2_2:21029904-21029923 Msa0243710:intron 30.0%
CATACTTCTATTCAATCTGT+GGG - chr2_2:21029905-21029924 Msa0243710:intron 30.0%
GACCATATATAAGAACTTTG+TGG + chr2_2:21029971-21029990 None:intergenic 30.0%
CTGTCATTATGTATCAGAAT+AGG - chr2_2:21030268-21030287 Msa0243710:intron 30.0%
! ATGGAAGCTTGAAAATTTTG+AGG + chr2_2:21030309-21030328 None:intergenic 30.0%
AATAGGCATAAGATCATCAA+TGG + chr2_2:21030328-21030347 None:intergenic 30.0%
GATTCTCATTATGATATCAG+AGG + chr2_2:21030417-21030436 None:intergenic 30.0%
CAGAACAATGAAACACATAT+GGG + chr2_2:21030556-21030575 None:intergenic 30.0%
ACAGAACAATGAAACACATA+TGG + chr2_2:21030557-21030576 None:intergenic 30.0%
TGCGAGAAAGTAAACAAATA+CGG + chr2_2:21030590-21030609 None:intergenic 30.0%
GAAAAGATTGAGAATGAACA+TGG - chr2_2:21030655-21030674 Msa0243710:intron 30.0%
TATCTTATTATAGATCGGCA+AGG - chr2_2:21030755-21030774 Msa0243710:intron 30.0%
ATTGAACACAAACTAGTGAT+AGG + chr2_2:21030897-21030916 None:intergenic 30.0%
CAAACTCAGATAATTCTAAC+AGG + chr2_2:21030938-21030957 None:intergenic 30.0%
! TTTGGAGTATGAACAAATGT+GGG + chr2_2:21030981-21031000 None:intergenic 30.0%
! ATTTGGAGTATGAACAAATG+TGG + chr2_2:21030982-21031001 None:intergenic 30.0%
! ATACTCCAAATGTTCAGTTT+TGG - chr2_2:21030991-21031010 Msa0243710:intron 30.0%
! TACTCCAAATGTTCAGTTTT+GGG - chr2_2:21030992-21031011 Msa0243710:intron 30.0%
GAGTCTATCTTATGTTATTC+TGG - chr2_2:21031152-21031171 Msa0243710:intron 30.0%
!!! CTTAAAGCTTATTTTTAGGG+AGG + chr2_2:21031587-21031606 None:intergenic 30.0%
TAACTTCTGATTGACTGAAT+TGG - chr2_2:21031663-21031682 Msa0243710:intron 30.0%
AATCTCTTCTTTATGATGAG+TGG - chr2_2:21031758-21031777 Msa0243710:intron 30.0%
ATCTCTTCTTTATGATGAGT+GGG - chr2_2:21031759-21031778 Msa0243710:intron 30.0%
ACAATTCATATCACTTTGAC+AGG + chr2_2:21031992-21032011 None:intergenic 30.0%
ATATGAATTGTGATCTAACG+AGG - chr2_2:21032001-21032020 Msa0243710:intron 30.0%
TATGAATTGTGATCTAACGA+GGG - chr2_2:21032002-21032021 Msa0243710:intron 30.0%
TGAATCCAAAAGAAGGAATA+TGG + chr2_2:21032142-21032161 None:intergenic 30.0%
TACAATCTGAATCCAAAAGA+AGG + chr2_2:21032149-21032168 None:intergenic 30.0%
TTGCAAAAAAGACCAACAAA+TGG + chr2_2:21032340-21032359 None:intergenic 30.0%
TCTTTGCTTGTTCAAGAGAA+CGG + chr2_2:21026739-21026758 None:intergenic 35.0%
!!! TTTGGGTTTGTTGGTTTTCA+TGG - chr2_2:21026909-21026928 Msa0243710:three_prime_UTR 35.0%
!!! TGTGGGTTAATGGTTTTTTG+CGG - chr2_2:21027751-21027770 Msa0243710:intron 35.0%
!!! AATGGTTTTTTGCGGTTCAA+TGG - chr2_2:21027759-21027778 Msa0243710:intron 35.0%
AGTTCAGATGTGGCTATTAT+AGG - chr2_2:21027856-21027875 Msa0243710:intron 35.0%
GTGTGGGAGAATAAAGAATA+TGG - chr2_2:21027894-21027913 Msa0243710:intron 35.0%
ATTTCATCCTAACCAGTAAG+GGG - chr2_2:21028149-21028168 Msa0243710:intron 35.0%
! GCAAACACGATCTTTAAAGA+TGG + chr2_2:21028381-21028400 None:intergenic 35.0%
AACTCCTAAAATCTTACGAG+TGG - chr2_2:21028599-21028618 Msa0243710:CDS 35.0%
AAGAGAATTATAGCTGGACT+GGG + chr2_2:21028875-21028894 None:intergenic 35.0%
AAAGAGAATTATAGCTGGAC+TGG + chr2_2:21028876-21028895 None:intergenic 35.0%
CAAAAAAGGGGAAACAGAAA+AGG + chr2_2:21029117-21029136 None:intergenic 35.0%
GGAAATAGGAGACAAAAAAG+GGG + chr2_2:21029129-21029148 None:intergenic 35.0%
GAGGAAATAGGAGACAAAAA+AGG + chr2_2:21029131-21029150 None:intergenic 35.0%
! GTCATTCAATTCCGGTTTTA+AGG + chr2_2:21029297-21029316 None:intergenic 35.0%
CTGTTATATTGCCTCAGTAA+AGG - chr2_2:21029595-21029614 Msa0243710:intron 35.0%
GTTATATTGCCTCAGTAAAG+GGG - chr2_2:21029597-21029616 Msa0243710:intron 35.0%
TTATATTGCCTCAGTAAAGG+GGG - chr2_2:21029598-21029617 Msa0243710:intron 35.0%
AGAACAGAGTTTAACACGAA+AGG + chr2_2:21029630-21029649 None:intergenic 35.0%
CACTTGTATCAGCATAACTA+TGG + chr2_2:21030027-21030046 None:intergenic 35.0%
CATAGTTATGCTGATACAAG+TGG - chr2_2:21030025-21030044 Msa0243710:intron 35.0%
TTAAGATGAATGACACCAGA+GGG + chr2_2:21030141-21030160 None:intergenic 35.0%
ATTAAGATGAATGACACCAG+AGG + chr2_2:21030142-21030161 None:intergenic 35.0%
TCCTCAGTATATTTCTTGTC+TGG - chr2_2:21030243-21030262 Msa0243710:intron 35.0%
CTTATACAGGTTAAGGCTAT+TGG - chr2_2:21030353-21030372 Msa0243710:intron 35.0%
AATTGTTTGGATGCGTTTCT+TGG - chr2_2:21030859-21030878 Msa0243710:intron 35.0%
ATTGTTTGGATGCGTTTCTT+GGG - chr2_2:21030860-21030879 Msa0243710:intron 35.0%
CAAATGTGGGTGAAATAACA+GGG + chr2_2:21030968-21030987 None:intergenic 35.0%
ACAAATGTGGGTGAAATAAC+AGG + chr2_2:21030969-21030988 None:intergenic 35.0%
CAAACCCAAAACTGAACATT+TGG + chr2_2:21030999-21031018 None:intergenic 35.0%
!! GTCATATTTCTAGGCAATGT+GGG + chr2_2:21031039-21031058 None:intergenic 35.0%
!!! ATAGCTTTTGGAGTTGAGTT+AGG - chr2_2:21031102-21031121 Msa0243710:intron 35.0%
AAATGTGAGTGCAGTATTAG+AGG + chr2_2:21031183-21031202 None:intergenic 35.0%
TTTCTCGAGATGTTTGAAGA+AGG - chr2_2:21031533-21031552 Msa0243710:CDS 35.0%
TTCTGATTGACTGAATTGGT+TGG - chr2_2:21031667-21031686 Msa0243710:intron 35.0%
! GTTGGTTTACTGATATACCA+GGG - chr2_2:21031685-21031704 Msa0243710:intron 35.0%
!! TATGGTAATGGTTCAGAATC+TGG + chr2_2:21031868-21031887 None:intergenic 35.0%
CACAGACATAGTTATGGTAA+TGG + chr2_2:21031880-21031899 None:intergenic 35.0%
CAGTTACACAGACATAGTTA+TGG + chr2_2:21031886-21031905 None:intergenic 35.0%
TCGTATATGCAATGCAATGT+TGG - chr2_2:21031924-21031943 Msa0243710:intron 35.0%
! TATGCAATGCAATGTTGGTT+TGG - chr2_2:21031929-21031948 Msa0243710:intron 35.0%
AAAGAAGGAATATGGTTGGA+CGG + chr2_2:21032134-21032153 None:intergenic 35.0%
! TCCAACCATATTCCTTCTTT+TGG - chr2_2:21032134-21032153 Msa0243710:intron 35.0%
TCCAAAAGAAGGAATATGGT+TGG + chr2_2:21032138-21032157 None:intergenic 35.0%
TTTATAGTCGTGATCTTCCA+TGG + chr2_2:21032253-21032272 None:intergenic 35.0%
!! CATTTTCAGTTGCCATTTGT+TGG - chr2_2:21032325-21032344 Msa0243710:CDS 35.0%
TTTGCAATGGATCATTGATG+TGG + chr2_2:21032392-21032411 None:intergenic 35.0%
CATATAAACTCCAGTATACC+AGG - chr2_2:21032459-21032478 Msa0243710:five_prime_UTR 35.0%
!! GAACAAGATGACTCTGAAGT+TGG - chr2_2:21026647-21026666 Msa0243710:three_prime_UTR 40.0%
CTTTGCTTGTTCAAGAGAAC+GGG + chr2_2:21026738-21026757 None:intergenic 40.0%
CCAACAAGGAGATATGTGTT+TGG + chr2_2:21027368-21027387 None:intergenic 40.0%
CCAAACACATATCTCCTTGT+TGG - chr2_2:21027365-21027384 Msa0243710:intron 40.0%
TGAGATCACACACAAGTACA+AGG - chr2_2:21027400-21027419 Msa0243710:intron 40.0%
GAGATCACACACAAGTACAA+GGG - chr2_2:21027401-21027420 Msa0243710:intron 40.0%
! TAGTTGATTCCACAAGCTCA+CGG + chr2_2:21027661-21027680 None:intergenic 40.0%
TACTGCCTGCTATCATTACT+TGG + chr2_2:21027726-21027745 None:intergenic 40.0%
! CAGTAGTTTGTGTGGGTTAA+TGG - chr2_2:21027741-21027760 Msa0243710:intron 40.0%
ATTATTGAACCACTGTGCAG+TGG + chr2_2:21027800-21027819 None:intergenic 40.0%
ACTGCACAGTGGTTCAATAA+TGG - chr2_2:21027799-21027818 Msa0243710:intron 40.0%
CTGCACAGTGGTTCAATAAT+GGG - chr2_2:21027800-21027819 Msa0243710:intron 40.0%
! TCTAGCTTCAAGTTCAGATG+TGG - chr2_2:21027846-21027865 Msa0243710:intron 40.0%
GATTGCTTCTAGTGGTGAAT+AGG - chr2_2:21027937-21027956 Msa0243710:intron 40.0%
GGGAAAAGAAAATCTGGCAT+AGG + chr2_2:21028044-21028063 None:intergenic 40.0%
TTTCATCCTAACCAGTAAGG+GGG - chr2_2:21028150-21028169 Msa0243710:intron 40.0%
! ATAAAACCCCCTTACTGGTT+AGG + chr2_2:21028159-21028178 None:intergenic 40.0%
GTGAGTGACGTCTATGATAA+CGG + chr2_2:21028185-21028204 None:intergenic 40.0%
ATAGACGTCACTCACTTTGT+TGG - chr2_2:21028190-21028209 Msa0243710:intron 40.0%
TAGACGTCACTCACTTTGTT+GGG - chr2_2:21028191-21028210 Msa0243710:intron 40.0%
CACTTTGTTGGGTAATCGAA+TGG - chr2_2:21028202-21028221 Msa0243710:intron 40.0%
CAGCCGTAAGCAATTAAAAG+AGG + chr2_2:21028497-21028516 None:intergenic 40.0%
!! CTTTTAATTGCTTACGGCTG+TGG - chr2_2:21028497-21028516 Msa0243710:CDS 40.0%
AACTCCTGATTGATTACCCA+CGG + chr2_2:21028792-21028811 None:intergenic 40.0%
!! ACTGGGATTGGTTGATCTTA+CGG + chr2_2:21028858-21028877 None:intergenic 40.0%
! AATTATAGCTGGACTGGGAT+TGG + chr2_2:21028870-21028889 None:intergenic 40.0%
CACTGTAGTTGTTGTGTCTA+AGG + chr2_2:21028980-21028999 None:intergenic 40.0%
GCCAGACAAGAAATATACTG+AGG + chr2_2:21030247-21030266 None:intergenic 40.0%
AAGGAAACAAAGAGGACTGA+AGG - chr2_2:21030383-21030402 Msa0243710:intron 40.0%
CCAGATTACGCATTACATAC+TGG + chr2_2:21030454-21030473 None:intergenic 40.0%
CCAGTATGTAATGCGTAATC+TGG - chr2_2:21030451-21030470 Msa0243710:intron 40.0%
GGATCGTGGTTATTCAAGAA+AGG - chr2_2:21030472-21030491 Msa0243710:intron 40.0%
GGTTATTCAAGAAAGGAGCT+AGG - chr2_2:21030479-21030498 Msa0243710:intron 40.0%
CATATGGGTAAGCAAAACAG+AGG + chr2_2:21030541-21030560 None:intergenic 40.0%
TTGTTTACTTTCTCGCATGC+TGG - chr2_2:21030593-21030612 Msa0243710:intron 40.0%
TGTTTACTTTCTCGCATGCT+GGG - chr2_2:21030594-21030613 Msa0243710:intron 40.0%
CATGGGACTTAAAAAGTTGC+AGG - chr2_2:21030673-21030692 Msa0243710:intron 40.0%
AAGAAACAGCAAGAGACTGT+AGG - chr2_2:21030704-21030723 Msa0243710:intron 40.0%
!!! TGTTCAGTTTTGGGTTTGAG+AGG - chr2_2:21031001-21031020 Msa0243710:intron 40.0%
!!! GTTCAGTTTTGGGTTTGAGA+GGG - chr2_2:21031002-21031021 Msa0243710:intron 40.0%
!! GGTCATATTTCTAGGCAATG+TGG + chr2_2:21031040-21031059 None:intergenic 40.0%
! TCACCTTGTGAGATAGCTTT+TGG - chr2_2:21031090-21031109 Msa0243710:intron 40.0%
ACTCCAAAAGCTATCTCACA+AGG + chr2_2:21031096-21031115 None:intergenic 40.0%
ACACACCTTAATGCTTACCA+CGG + chr2_2:21031224-21031243 None:intergenic 40.0%
ATACACATTTGCCTACGTTC+CGG - chr2_2:21031262-21031281 Msa0243710:intron 40.0%
ACACTCAAGACTGTAACATC+CGG + chr2_2:21031284-21031303 None:intergenic 40.0%
ATGTTACAGTCTTGAGTGTG+TGG - chr2_2:21031285-21031304 Msa0243710:intron 40.0%
TGGCAGACCAATGAATTACT+AGG - chr2_2:21031305-21031324 Msa0243710:intron 40.0%
AAGCCAAACTATGTGCAGAT+AGG - chr2_2:21031440-21031459 Msa0243710:intron 40.0%
GTTCCTATCTGCACATAGTT+TGG + chr2_2:21031446-21031465 None:intergenic 40.0%
GAACAGTGAGAAGAATTGCT+GGG - chr2_2:21031462-21031481 Msa0243710:intron 40.0%
! AATGCAGATCGATTAGTTGC+TGG - chr2_2:21031509-21031528 Msa0243710:intron 40.0%
TGAAGAAGGATGCCACAAAA+TGG - chr2_2:21031547-21031566 Msa0243710:CDS 40.0%
! AGAGAGATCCAACCATTTTG+TGG + chr2_2:21031562-21031581 None:intergenic 40.0%
!! GGTTGGTTTACTGATATACC+AGG - chr2_2:21031684-21031703 Msa0243710:intron 40.0%
CAGAATTCAAGAACAGCTGA+AGG - chr2_2:21031723-21031742 Msa0243710:intron 40.0%
! AGAGAATCTAGGTTGGAACT+TGG + chr2_2:21032098-21032117 None:intergenic 40.0%
AAGCTGAAATTTGGCTGCAT+TGG - chr2_2:21032180-21032199 Msa0243710:intron 40.0%
CCATCAGCATAAACACGAAC+AGG + chr2_2:21026686-21026705 None:intergenic 45.0%
CCTGTTCGTGTTTATGCTGA+TGG - chr2_2:21026683-21026702 Msa0243710:three_prime_UTR 45.0%
TCTCTTCGTCACTGCAAGTT+CGG - chr2_2:21027458-21027477 Msa0243710:CDS 45.0%
! CTTTTCTTTCCGTGAGCTTG+TGG - chr2_2:21027649-21027668 Msa0243710:intron 45.0%
! ATAGCAGGCAGTAGTTTGTG+TGG - chr2_2:21027733-21027752 Msa0243710:intron 45.0%
! TAGCAGGCAGTAGTTTGTGT+GGG - chr2_2:21027734-21027753 Msa0243710:intron 45.0%
! CACAGTGGTTCAATAATGGG+TGG - chr2_2:21027803-21027822 Msa0243710:intron 45.0%
!! TGGTTCAATAATGGGTGGTG+CGG - chr2_2:21027808-21027827 Msa0243710:intron 45.0%
! GTTTTACATTTCGGCGGTGT+GGG - chr2_2:21027878-21027897 Msa0243710:intron 45.0%
GCTTCAACGATTGCTTCTAG+TGG - chr2_2:21027929-21027948 Msa0243710:intron 45.0%
CTTCTAGTGGTGAATAGGCT+AGG - chr2_2:21027942-21027961 Msa0243710:intron 45.0%
TAGGTGCGATGGCAATGAAA+TGG - chr2_2:21027961-21027980 Msa0243710:intron 45.0%
TCGAGAAGAAGCAAGCTTCA+GGG + chr2_2:21028014-21028033 None:intergenic 45.0%
GGAGAATAAAACCCCCTTAC+TGG + chr2_2:21028164-21028183 None:intergenic 45.0%
GATGAAGTGAACGGTGAGAT+TGG - chr2_2:21028288-21028307 Msa0243710:CDS 45.0%
AGATCGTGTTTGCGGATAAC+TGG - chr2_2:21028388-21028407 Msa0243710:intron 45.0%
GGCGTCTTTCTGATTATGTC+TGG - chr2_2:21028450-21028469 Msa0243710:intron 45.0%
! AGTTCAATTGCACTTGCTGC+AGG - chr2_2:21028739-21028758 Msa0243710:intron 45.0%
AAGTTATTCCAGATGTGCCG+TGG - chr2_2:21028772-21028791 Msa0243710:intron 45.0%
AGTTATTCCAGATGTGCCGT+GGG - chr2_2:21028773-21028792 Msa0243710:intron 45.0%
TGTGCAAACTATTCATGGCG+AGG - chr2_2:21029571-21029590 Msa0243710:intron 45.0%
TATGCTGATACAAGTGGAGC+TGG - chr2_2:21030031-21030050 Msa0243710:intron 45.0%
TGATACAAGTGGAGCTGGAA+AGG - chr2_2:21030036-21030055 Msa0243710:intron 45.0%
!!! TGTTTTTTCTTCCCACCCTC+TGG - chr2_2:21030123-21030142 Msa0243710:intron 45.0%
GTAATGCGTAATCTGGATCG+TGG - chr2_2:21030458-21030477 Msa0243710:intron 45.0%
GCTAGGTGTTAGCTATGTCA+AGG - chr2_2:21030496-21030515 Msa0243710:intron 45.0%
GCAAGAGACTGTAGGAAAGA+AGG - chr2_2:21030712-21030731 Msa0243710:intron 45.0%
ATGTCCCGTGGTAAGCATTA+AGG - chr2_2:21031216-21031235 Msa0243710:intron 45.0%
CACACCTTAATGCTTACCAC+GGG + chr2_2:21031223-21031242 None:intergenic 45.0%
GGAACAGTGAGAAGAATTGC+TGG - chr2_2:21031461-21031480 Msa0243710:intron 45.0%
GAAGGATGCCACAAAATGGT+TGG - chr2_2:21031551-21031570 Msa0243710:CDS 45.0%
CTGTTGGAGAGAATCTAGGT+TGG + chr2_2:21032105-21032124 None:intergenic 45.0%
TGCACTGTTGGAGAGAATCT+AGG + chr2_2:21032109-21032128 None:intergenic 45.0%
!! TATGACCTAGTCTTGTGCCA+TGG - chr2_2:21032233-21032252 Msa0243710:CDS 45.0%
ATCTTCCATGGCACAAGACT+AGG + chr2_2:21032241-21032260 None:intergenic 45.0%
!!! AATATAATAGTATTTTAATT+TGG - chr2_2:21029057-21029076 Msa0243710:intron 5.0%
!! CTATTAATAAAAAATATTAT+TGG + chr2_2:21030791-21030810 None:intergenic 5.0%
CTTGTTCAAGAGAACGGGCA+TGG + chr2_2:21026733-21026752 None:intergenic 50.0%
CATCACTGCAGCATCCAACA+AGG + chr2_2:21027382-21027401 None:intergenic 50.0%
CGGGTCCAAGTAATGATAGC+AGG - chr2_2:21027718-21027737 Msa0243710:intron 50.0%
! GACAGTTTTCCACTGCACAG+TGG - chr2_2:21027788-21027807 Msa0243710:intron 50.0%
!! TTCAATAATGGGTGGTGCGG+TGG - chr2_2:21027811-21027830 Msa0243710:intron 50.0%
! GGTTTTACATTTCGGCGGTG+TGG - chr2_2:21027877-21027896 Msa0243710:intron 50.0%
CTCGAGAAGAAGCAAGCTTC+AGG + chr2_2:21028015-21028034 None:intergenic 50.0%
TCGTGTTTGCGGATAACTGG+CGG - chr2_2:21028391-21028410 Msa0243710:intron 50.0%
ATTGCTTACGGCTGTGGAGT+AGG - chr2_2:21028503-21028522 Msa0243710:CDS 50.0%
! TCAATTGCACTTGCTGCAGG+TGG - chr2_2:21028742-21028761 Msa0243710:intron 50.0%
! CAATTGCACTTGCTGCAGGT+GGG - chr2_2:21028743-21028762 Msa0243710:intron 50.0%
TTGATTACCCACGGCACATC+TGG + chr2_2:21028783-21028802 None:intergenic 50.0%
TGTGCCGTGGGTAATCAATC+AGG - chr2_2:21028785-21028804 Msa0243710:intron 50.0%
TGTGTGTGTATGTGCACGTG+CGG + chr2_2:21029207-21029226 None:intergenic 50.0%
GATGAATGACACCAGAGGGT+GGG + chr2_2:21030137-21030156 None:intergenic 50.0%
AGATGAATGACACCAGAGGG+TGG + chr2_2:21030138-21030157 None:intergenic 50.0%
GGTAAGCAAAACAGAGGAGC+TGG + chr2_2:21030535-21030554 None:intergenic 50.0%
TTACTTTCTCGCATGCTGGG+AGG - chr2_2:21030597-21030616 Msa0243710:intron 50.0%
! TTCATGCTCTAGATGTCCCG+TGG - chr2_2:21031204-21031223 Msa0243710:intron 50.0%
GACTGTAACATCCGGAACGT+AGG + chr2_2:21031276-21031295 None:intergenic 50.0%
! TGTCTCTGATTGCTGTTCCC+TGG + chr2_2:21031705-21031724 None:intergenic 50.0%
! ACGAGGGTACAACCGTACAA+CGG - chr2_2:21032018-21032037 Msa0243710:intron 50.0%
ACAACCGTACAACGGTTGCA+TGG - chr2_2:21032026-21032045 Msa0243710:intron 50.0%
TGCACCATGCAACCGTTGTA+CGG + chr2_2:21032033-21032052 None:intergenic 50.0%
!! ATTTGGCTGCATTGGCTGTG+CGG - chr2_2:21032188-21032207 Msa0243710:intron 50.0%
GGTGAATAGGCTAGGTGCGA+TGG - chr2_2:21027950-21027969 Msa0243710:intron 55.0%
CAGGGCTCTCGAAGACAACA+AGG + chr2_2:21027996-21028015 None:intergenic 55.0%
GGATAACGCCCCCTTTACTG+AGG + chr2_2:21029609-21029628 None:intergenic 55.0%
ACGGTTGCATGGTGCAACAG+AGG - chr2_2:21032037-21032056 Msa0243710:intron 55.0%
!! TTTGGCTGCATTGGCTGTGC+GGG - chr2_2:21032189-21032208 Msa0243710:intron 55.0%
! ATTGGCTGTGCGGGTTGTAG+AGG - chr2_2:21032198-21032217 Msa0243710:intron 55.0%
!! GGTTGGACGGACTGCACTGT+TGG + chr2_2:21032121-21032140 None:intergenic 60.0%
TGGGTGGTGCGGTGGATCTG+TGG - chr2_2:21027819-21027838 Msa0243710:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 21026500 21032489 21026500 ID=Msa0243710;Name=Msa0243710
chr2_2 mRNA 21026500 21032489 21026500 ID=Msa0243710-mRNA-1;Parent=Msa0243710;Name=Msa0243710-mRNA-1;_AED=0.10;_eAED=0.10;_QI=141|0.85|0.87|1|0.85|0.87|8|649|296
chr2_2 exon 21026500 21027283 21026500 ID=Msa0243710-mRNA-1:exon:8419;Parent=Msa0243710-mRNA-1
chr2_2 exon 21027421 21027564 21027421 ID=Msa0243710-mRNA-1:exon:8418;Parent=Msa0243710-mRNA-1
chr2_2 exon 21028256 21028336 21028256 ID=Msa0243710-mRNA-1:exon:8417;Parent=Msa0243710-mRNA-1
chr2_2 exon 21028472 21028627 21028472 ID=Msa0243710-mRNA-1:exon:8416;Parent=Msa0243710-mRNA-1
chr2_2 exon 21028917 21028959 21028917 ID=Msa0243710-mRNA-1:exon:8415;Parent=Msa0243710-mRNA-1
chr2_2 exon 21030133 21030228 21030133 ID=Msa0243710-mRNA-1:exon:8414;Parent=Msa0243710-mRNA-1
chr2_2 exon 21031515 21031628 21031515 ID=Msa0243710-mRNA-1:exon:8413;Parent=Msa0243710-mRNA-1
chr2_2 exon 21032227 21032489 21032227 ID=Msa0243710-mRNA-1:exon:8412;Parent=Msa0243710-mRNA-1
chr2_2 five_prime_UTR 21032349 21032489 21032349 ID=Msa0243710-mRNA-1:five_prime_utr;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21032227 21032348 21032227 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21031515 21031628 21031515 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21030133 21030228 21030133 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21028917 21028959 21028917 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21028472 21028627 21028472 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21028256 21028336 21028256 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21027421 21027564 21027421 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 CDS 21027149 21027283 21027149 ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2 three_prime_UTR 21026500 21027148 21026500 ID=Msa0243710-mRNA-1:three_prime_utr;Parent=Msa0243710-mRNA-1
Gene Sequence

>Msa0243710

ATGAATGAACAAGATGACTCTGAAGTTGGCAAAAACGATAAACCTGTTCGTGTTTATGCTGATGGAATTTACGATCTCTTTCACTTTGGCCATGCCCGTTCTCTTGAACAAGCAAAGAAATCGTTTCCAAACACATATCTCCTTGTTGGATGCTGCAGTGATGAGATCACACACAAGTACAAGGGTAAAACAGTTATGAATGAGCAAGAACGCTATGAGTCTCTTCGTCACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCGTGGGTAATCAATCAGGAGTTCATTGACAAGCATAAAATTGACTATGTGGCACATGATGCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACAAAGAGGACTGAAGGAATTTCTACCTCTGATATCATAATGAGAATCATCAAGGATTACAACCAGTATGTAATGCGTAATCTGGATCGTGGTTATTCAAGAAAGGAGCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTCAAGAAACAGCAAGAGACTGTAGGAAAGAAGACACTATCATATGACAAGCCAAACTATGTGCAGATAGGAACAGTGAGAAGAATTGCTGGGATGAACCGTACTGAATGGGTTGAAAATGCAGATCGATTAGTTGCTGGATTTCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACAGCAATCAGAGACAGAATTCAAGAACAGCTGAAGGCACAACAGCTAAAATCTCTTCTTTATGATGAGTGGGATGATGACGTTGACGACGAATTCTATGAAGATGAATCTGTAGAATACTACAGCGACTAA

Protein sequence

>Msa0243710

MNEQDDSEVGKNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERYESLRHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGKDVYEFVKAIGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKTLSYDKPNYVQIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLKSLLYDEWDDDVDDEFYEDESVEYYSD*