AlfalfaGEDB | Msa0243710

M. sativa cultivar zhongmu-4 / Msa0243710

KEGG: K00968
GO: -
PFAM: PF01467.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243710	XP_003594885.1	95.946	296	1	1	1	296	1	285	0.0	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243710	sp\|Q9ZV56\|CCT1_ARATH	75.540	278	52	3	12	288	31	293	8.52e-152	431

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243710	G7INF3	95.946	296	1	1	1	296	1	285	0.0	582

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0243710	-0.861491	9.882666e-64	-8.615850e-47
Msa0001780	Msa0243710	0.827103	1.881966e-54	-8.615850e-47
Msa0001790	Msa0243710	0.820583	6.354111e-53	-8.615850e-47
Msa0004880	Msa0243710	0.826527	2.583864e-54	-8.615850e-47
Msa0006110	Msa0243710	0.834235	3.369583e-56	-8.615850e-47
Msa0006390	Msa0243710	0.802030	6.807602e-49	-8.615850e-47
Msa0007080	Msa0243710	0.820162	7.935983e-53	-8.615850e-47
Msa0008340	Msa0243710	0.808476	3.039734e-50	-8.615850e-47
Msa0011170	Msa0243710	0.850662	1.469011e-60	-8.615850e-47
Msa0011720	Msa0243710	0.805172	1.517685e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243710	MtrunA17_Chr2g0297021	95.946	296	1	1	1	296	1	285	0.0	582
Msa0243710	MtrunA17_Chr3g0120311	79.688	256	37	1	13	268	15	255	8.69e-154	432
Msa0243710	MtrunA17_Chr4g0032051	82.258	186	19	3	111	295	20	192	3.65e-93	274
Msa0243710	MtrunA17_Chr4g0032041	98.630	73	1	0	66	138	1	73	6.27e-47	156
Msa0243710	MtrunA17_Chr4g0032031	83.051	59	9	1	1	59	1	58	3.71e-29	105
Msa0243710	MtrunA17_Chr7g0245591	40.000	145	79	3	11	151	50	190	5.28e-28	112
Msa0243710	MtrunA17_Chr7g0245591	36.957	92	54	2	18	107	258	347	4.89e-12	65.9
Msa0243710	MtrunA17_Chr8g0389111	41.379	145	77	3	16	156	65	205	3.47e-26	106
Msa0243710	MtrunA17_Chr8g0389111	35.484	155	93	4	18	169	256	406	5.51e-19	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243710	AT2G32260.1	75.540	278	52	3	12	288	31	293	8.66e-153	431
Msa0243710	AT2G32260.2	74.194	248	48	3	42	288	12	244	5.19e-131	374
Msa0243710	AT2G38670.1	38.272	162	89	4	14	171	53	207	2.40e-27	110
Msa0243710	AT2G38670.1	32.692	156	100	3	18	170	257	410	3.27e-17	81.6

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Find 88 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTGAGAATGAACAT+GGG	0.642829	2_2:-21028311	Msa0243710:CDS
AAAATTAAGGAATATAGGGT+AGG	0.597493	2_2:-21026558	Msa0243710:three_prime_UTR
AAAGAAGGAATATGGTTGGA+CGG	0.619436	2_2:+21026836	None:intergenic
AACTCCTGATTGATTACCCA+CGG	0.589451	2_2:+21030178	None:intergenic
AAGAAACAGCAAGAGACTGT+AGG	0.592810	2_2:-21028263	Msa0243710:CDS
AAGCCAAACTATGTGCAGAT+AGG	0.520262	2_2:-21027527	Msa0243710:CDS
AAGCTGAAATTTGGCTGCAT+TGG	0.447683	2_2:-21026787	Msa0243710:three_prime_UTR
AAGGAAACAAAGAGGACTGA+AGG	0.570979	2_2:-21028584	Msa0243710:CDS
AAGTTATTCCAGATGTGCCG+TGG	0.587410	2_2:-21030195	Msa0243710:CDS
AATCTCTTCTTTATGATGAG+TGG	0.507907	2_2:-21027209	Msa0243710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATGTTCAGAGTCAAAA+CGG	+	chr2_2:21026599-21026618	None:intergenic	30.0%
ATTTACGATCTCTTTCACTT+TGG	-	chr2_2:21026707-21026726	Msa0243710:three_prime_UTR	30.0%
ATGAAGCAAAAGAAAAAGGA+GGG	+	chr2_2:21026782-21026801	None:intergenic	30.0%
AATGAAGCAAAAGAAAAAGG+AGG	+	chr2_2:21026783-21026802	None:intergenic	30.0%
AAAAGAACAAAAAATGGGGT+TGG	+	chr2_2:21026892-21026911	None:intergenic	30.0%
ACCCAAAAGAACAAAAAATG+GGG	+	chr2_2:21026896-21026915	None:intergenic	30.0%
TTGATTTCCCATTTGCAATT+AGG	-	chr2_2:21027099-21027118	Msa0243710:three_prime_UTR	30.0%
TGTAGAATAGTAGATGTATC+AGG	-	chr2_2:21027579-21027598	Msa0243710:intron	30.0%
AAAAATTGAAGAGTTTGTGC+GGG	-	chr2_2:21027699-21027718	Msa0243710:intron	30.0%
TAAAGAATATGGTCGAGATT+TGG	-	chr2_2:21027905-21027924	Msa0243710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	21026500	21032489	21026500	ID=Msa0243710;Name=Msa0243710
chr2_2	mRNA	21026500	21032489	21026500	ID=Msa0243710-mRNA-1;Parent=Msa0243710;Name=Msa0243710-mRNA-1;_AED=0.10;_eAED=0.10;_QI=141\|0.85\|0.87\|1\|0.85\|0.87\|8\|649\|296
chr2_2	exon	21026500	21027283	21026500	ID=Msa0243710-mRNA-1:exon:8419;Parent=Msa0243710-mRNA-1
chr2_2	exon	21027421	21027564	21027421	ID=Msa0243710-mRNA-1:exon:8418;Parent=Msa0243710-mRNA-1
chr2_2	exon	21028256	21028336	21028256	ID=Msa0243710-mRNA-1:exon:8417;Parent=Msa0243710-mRNA-1
chr2_2	exon	21028472	21028627	21028472	ID=Msa0243710-mRNA-1:exon:8416;Parent=Msa0243710-mRNA-1
chr2_2	exon	21028917	21028959	21028917	ID=Msa0243710-mRNA-1:exon:8415;Parent=Msa0243710-mRNA-1
chr2_2	exon	21030133	21030228	21030133	ID=Msa0243710-mRNA-1:exon:8414;Parent=Msa0243710-mRNA-1
chr2_2	exon	21031515	21031628	21031515	ID=Msa0243710-mRNA-1:exon:8413;Parent=Msa0243710-mRNA-1
chr2_2	exon	21032227	21032489	21032227	ID=Msa0243710-mRNA-1:exon:8412;Parent=Msa0243710-mRNA-1
chr2_2	five_prime_UTR	21032349	21032489	21032349	ID=Msa0243710-mRNA-1:five_prime_utr;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21032227	21032348	21032227	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21031515	21031628	21031515	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21030133	21030228	21030133	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21028917	21028959	21028917	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21028472	21028627	21028472	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21028256	21028336	21028256	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21027421	21027564	21027421	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	CDS	21027149	21027283	21027149	ID=Msa0243710-mRNA-1:cds;Parent=Msa0243710-mRNA-1
chr2_2	three_prime_UTR	21026500	21027148	21026500	ID=Msa0243710-mRNA-1:three_prime_utr;Parent=Msa0243710-mRNA-1

Gene Sequence

>Msa0243710

ATGAATGAACAAGATGACTCTGAAGTTGGCAAAAACGATAAACCTGTTCGTGTTTATGCTGATGGAATTTACGATCTCTTTCACTTTGGCCATGCCCGTTCTCTTGAACAAGCAAAGAAATCGTTTCCAAACACATATCTCCTTGTTGGATGCTGCAGTGATGAGATCACACACAAGTACAAGGGTAAAACAGTTATGAATGAGCAAGAACGCTATGAGTCTCTTCGTCACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCGTGGGTAATCAATCAGGAGTTCATTGACAAGCATAAAATTGACTATGTGGCACATGATGCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACAAAGAGGACTGAAGGAATTTCTACCTCTGATATCATAATGAGAATCATCAAGGATTACAACCAGTATGTAATGCGTAATCTGGATCGTGGTTATTCAAGAAAGGAGCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTCAAGAAACAGCAAGAGACTGTAGGAAAGAAGACACTATCATATGACAAGCCAAACTATGTGCAGATAGGAACAGTGAGAAGAATTGCTGGGATGAACCGTACTGAATGGGTTGAAAATGCAGATCGATTAGTTGCTGGATTTCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACAGCAATCAGAGACAGAATTCAAGAACAGCTGAAGGCACAACAGCTAAAATCTCTTCTTTATGATGAGTGGGATGATGACGTTGACGACGAATTCTATGAAGATGAATCTGTAGAATACTACAGCGACTAA

Protein sequence

>Msa0243710

MNEQDDSEVGKNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERYESLRHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGKDVYEFVKAIGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKTLSYDKPNYVQIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLKSLLYDEWDDDVDDEFYEDESVEYYSD*