Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107430 | XP_013443248.1 | 84.365 | 307 | 28 | 8 | 1 | 300 | 1 | 294 | 1.14e-154 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107430 | A0A072TK54 | 84.365 | 307 | 28 | 8 | 1 | 300 | 1 | 294 | 5.46e-155 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216340 | Msa1107430 | 0.807786 | 4.263007e-50 | -8.615850e-47 |
| Msa1023210 | Msa1107430 | 0.844606 | 6.813315e-59 | -8.615850e-47 |
| Msa1061930 | Msa1107430 | 0.852010 | 6.108678e-61 | -8.615850e-47 |
| Msa1107430 | Msa1150960 | 0.813445 | 2.550550e-51 | -8.615850e-47 |
| Msa1107430 | Msa1365820 | 0.804362 | 2.240484e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107430 | MtrunA17_Chr7g0240771 | 84.365 | 307 | 28 | 8 | 1 | 300 | 1 | 294 | 1.05e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107430 | AT3G54000.3 | 29.126 | 309 | 159 | 15 | 5 | 300 | 8 | 269 | 8.59e-12 | 65.1 |
| Msa1107430 | AT3G54000.2 | 30.189 | 318 | 144 | 16 | 5 | 300 | 8 | 269 | 9.54e-12 | 65.1 |
| Msa1107430 | AT3G54000.1 | 29.126 | 309 | 159 | 15 | 5 | 300 | 8 | 269 | 1.31e-11 | 64.7 |
Find 64 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATGTGAAGGGATTT+TGG | 0.181897 | 7_3:-48975826 | None:intergenic |
| TTTAATAGAGGAAAAGAAAA+AGG | 0.220430 | 7_3:-48975787 | None:intergenic |
| CAATCAACCCTATGTGCTTT+TGG | 0.244653 | 7_3:+48976332 | Msa1107430:CDS |
| CTGAAAGACTGAACACAATA+AGG | 0.284676 | 7_3:+48976721 | Msa1107430:CDS |
| TGATGAACCTTTGCGGCATT+TGG | 0.294703 | 7_3:-48976363 | None:intergenic |
| GCGGGTATGCAGAAGCAAAA+TGG | 0.310089 | 7_3:+48976744 | Msa1107430:CDS |
| AACAACAACGTTGCTGGTTT+AGG | 0.336273 | 7_3:+48976831 | Msa1107430:CDS |
| GCATTCTCACAAACACCATT+AGG | 0.337817 | 7_3:-48976398 | None:intergenic |
| ATGGTTGTGGAGTTTGAATT+TGG | 0.348346 | 7_3:-48976899 | None:intergenic |
| ATTTGGATGACGGTGAGTTC+TGG | 0.349881 | 7_3:+48975916 | Msa1107430:CDS |
| GGAAATTGAAGTGAAAGAAA+AGG | 0.359094 | 7_3:-48975851 | None:intergenic |
| AAACACCATTAGGGCTTCCT+TGG | 0.367277 | 7_3:-48976388 | None:intergenic |
| CGGGTATGCAGAAGCAAAAT+GGG | 0.371790 | 7_3:+48976745 | Msa1107430:CDS |
| GTTATGATTCTCAGAGGCTT+TGG | 0.379710 | 7_3:-48976186 | None:intergenic |
| TTGTTCATCATCGTCACTTT+CGG | 0.392470 | 7_3:-48976111 | None:intergenic |
| GTTTCGCATTTCAGTAATCA+TGG | 0.394148 | 7_3:+48975748 | Msa1107430:five_prime_UTR |
| CATTCTCACAAACACCATTA+GGG | 0.402675 | 7_3:-48976397 | None:intergenic |
| AGCGAAAGCGAAGAAGGTTT+CGG | 0.413750 | 7_3:-48975993 | None:intergenic |
| GAAATTGAAGTGAAAGAAAA+GGG | 0.418507 | 7_3:-48975850 | None:intergenic |
| AATGGTTATGGTAGCAGTAC+TGG | 0.435118 | 7_3:+48976945 | Msa1107430:CDS |
| TCAATCCAAGGAAGCCCTAA+TGG | 0.437674 | 7_3:+48976383 | Msa1107430:CDS |
| CTTGGATTGATGAACCTTTG+CGG | 0.438687 | 7_3:-48976370 | None:intergenic |
| GGGGAAGAAGAATTTCTTTG+AGG | 0.452557 | 7_3:-48976500 | None:intergenic |
| AGGAAAACAGCTCTCATGTA+TGG | 0.476383 | 7_3:-48976918 | None:intergenic |
| TTGAAAAGCGAAAGCGAAGA+AGG | 0.482963 | 7_3:-48975999 | None:intergenic |
| GGAGGAAGAAATGTTGTTGA+TGG | 0.488016 | 7_3:+48976795 | Msa1107430:CDS |
| TGTTGAGCATGTTGTAGTGT+TGG | 0.499882 | 7_3:-48976873 | None:intergenic |
| GTCATTTCCAAAAGCACATA+GGG | 0.503258 | 7_3:-48976339 | None:intergenic |
| GAATTCAGTTGCAGAGGATG+AGG | 0.508628 | 7_3:+48976685 | Msa1107430:intron |
| TTTCAGCAAAGACAAACAAA+TGG | 0.515645 | 7_3:+48976774 | Msa1107430:CDS |
| TAGGTTTGTCATCATCTGCA+TGG | 0.523719 | 7_3:+48976850 | Msa1107430:CDS |
| GATTACTGAAATGCGAAACA+TGG | 0.526151 | 7_3:-48975744 | None:intergenic |
| ACAGCTCTCATGTATGGTTG+TGG | 0.530451 | 7_3:-48976912 | None:intergenic |
| GTCATCCAAATTCTCAGCCA+TGG | 0.531206 | 7_3:-48975904 | None:intergenic |
| TCAGAGCCAGCGAATCCATA+AGG | 0.533526 | 7_3:-48976047 | None:intergenic |
| GAATCATAACAACAATAACT+TGG | 0.540471 | 7_3:+48976199 | Msa1107430:CDS |
| TGAAAGACTGAACACAATAA+GGG | 0.546206 | 7_3:+48976722 | Msa1107430:CDS |
| TTTCGCATTTCAGTAATCAT+GGG | 0.551757 | 7_3:+48975749 | Msa1107430:five_prime_UTR |
| AGTCATTTCCAAAAGCACAT+AGG | 0.552956 | 7_3:-48976340 | None:intergenic |
| TGCTACCATAACCATTTCCA+AGG | 0.565265 | 7_3:-48976938 | None:intergenic |
| AAAAGGGAGAGAAAATGTGA+AGG | 0.566760 | 7_3:-48975834 | None:intergenic |
| AAAGGGAGAGAAAATGTGAA+GGG | 0.576120 | 7_3:-48975833 | None:intergenic |
| TGTGTCATCACCGTCGTCGT+CGG | 0.577857 | 7_3:-48975958 | None:intergenic |
| CGCAAAGGTTCATCAATCCA+AGG | 0.581073 | 7_3:+48976371 | Msa1107430:CDS |
| TGATAATGAGAAAGTGATTG+TGG | 0.597158 | 7_3:-48976572 | None:intergenic |
| CAGAGGCTTTGGAATCAACA+AGG | 0.597475 | 7_3:-48976175 | None:intergenic |
| TATGGTAGCAGTACTGGCAC+TGG | 0.599660 | 7_3:+48976951 | Msa1107430:CDS |
| AATGACTCCAAATGCCGCAA+AGG | 0.600691 | 7_3:+48976356 | Msa1107430:CDS |
| ATTACTGAAATGCGAAACAT+GGG | 0.608473 | 7_3:-48975743 | None:intergenic |
| CAGCAAAGACAAACAAATGG+AGG | 0.610080 | 7_3:+48976777 | Msa1107430:CDS |
| GTTGGTGAATTCAGTTGCAG+AGG | 0.615988 | 7_3:+48976679 | Msa1107430:intron |
| TTTGGATGGTAAAGTAACAG+GGG | 0.623580 | 7_3:-48976519 | None:intergenic |
| ATTGTTGTTATGATTCTCAG+AGG | 0.625609 | 7_3:-48976192 | None:intergenic |
| TTTGGAATCAACAAGGAGAG+AGG | 0.627829 | 7_3:-48976168 | None:intergenic |
| AGACTGAACACAATAAGGGC+GGG | 0.631505 | 7_3:+48976726 | Msa1107430:CDS |
| GAAGCAGCAAGAGAATCGAT+TGG | 0.636063 | 7_3:-48976080 | None:intergenic |
| GGGTATGCAGAAGCAAAATG+GGG | 0.639834 | 7_3:+48976746 | Msa1107430:CDS |
| CAGTTTCTCTCCGACGACGA+CGG | 0.644936 | 7_3:+48975948 | Msa1107430:CDS |
| AAAGCACATAGGGTTGATTG+TGG | 0.656361 | 7_3:-48976329 | None:intergenic |
| ATGGCTGAGAATTTGGATGA+CGG | 0.669713 | 7_3:+48975906 | Msa1107430:CDS |
| GGTATGCAGAAGCAAAATGG+GGG | 0.674755 | 7_3:+48976747 | Msa1107430:CDS |
| AAGACTGAACACAATAAGGG+CGG | 0.676287 | 7_3:+48976725 | Msa1107430:CDS |
| TCGTCGGAGAGAAACTGCGG+CGG | 0.707718 | 7_3:-48975942 | None:intergenic |
| TCGTCGTCGGAGAGAAACTG+CGG | 0.728597 | 7_3:-48975945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATATTTTTTCCTTTT+AGG | + | chr7_3:48976260-48976279 | Msa1107430:intron | 10.0% |
| !!! | TTATATATTTTTTCCTTTTA+GGG | + | chr7_3:48976261-48976280 | Msa1107430:intron | 10.0% |
| !!! | GTATGCATTTTTTTTTTTTT+TGG | + | chr7_3:48976221-48976240 | Msa1107430:intron | 15.0% |
| !! | TTAATAGAGGAAAAGAAAAA+GGG | - | chr7_3:48975789-48975808 | None:intergenic | 20.0% |
| !! | TTTAATAGAGGAAAAGAAAA+AGG | - | chr7_3:48975790-48975809 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGTTTTTCCTTT+TGG | + | chr7_3:48976234-48976253 | Msa1107430:intron | 20.0% |
| !!! | TTTTTTTGGTTTTTCCTTTT+GGG | + | chr7_3:48976235-48976254 | Msa1107430:intron | 20.0% |
| !! | AAAATATATAAAACCCCAAA+AGG | - | chr7_3:48976252-48976271 | None:intergenic | 20.0% |
| !!! | GTTTGTTAGGATTTTAATAG+AGG | - | chr7_3:48975802-48975821 | None:intergenic | 25.0% |
| ! | GAAATTGAAGTGAAAGAAAA+GGG | - | chr7_3:48975853-48975872 | None:intergenic | 25.0% |
| ! | GAATCATAACAACAATAACT+TGG | + | chr7_3:48976199-48976218 | Msa1107430:CDS | 25.0% |
| !!! | TTTTTTGGTTTTTCCTTTTG+GGG | + | chr7_3:48976236-48976255 | Msa1107430:intron | 25.0% |
| ATTACTGAAATGCGAAACAT+GGG | - | chr7_3:48975746-48975765 | None:intergenic | 30.0% | |
| TTTCGCATTTCAGTAATCAT+GGG | + | chr7_3:48975749-48975768 | Msa1107430:five_prime_UTR | 30.0% | |
| GAAAAGAAAAAGGGATTATG+TGG | - | chr7_3:48975780-48975799 | None:intergenic | 30.0% | |
| GGAAATTGAAGTGAAAGAAA+AGG | - | chr7_3:48975854-48975873 | None:intergenic | 30.0% | |
| ACAGAGAGAAAAAAAAACAG+AGG | - | chr7_3:48975875-48975894 | None:intergenic | 30.0% | |
| ! | ATTGTTGTTATGATTCTCAG+AGG | - | chr7_3:48976195-48976214 | None:intergenic | 30.0% |
| !!! | GTTTTTATTGTCGTTTTGCA+GGG | + | chr7_3:48976299-48976318 | Msa1107430:intron | 30.0% |
| ! | TTTTGGATGGTAAAGTAACA+GGG | - | chr7_3:48976523-48976542 | None:intergenic | 30.0% |
| ! | TTTTTGGATGGTAAAGTAAC+AGG | - | chr7_3:48976524-48976543 | None:intergenic | 30.0% |
| ! | TGATAATGAGAAAGTGATTG+TGG | - | chr7_3:48976575-48976594 | None:intergenic | 30.0% |
| TGAAAGACTGAACACAATAA+GGG | + | chr7_3:48976722-48976741 | Msa1107430:CDS | 30.0% | |
| TTTCAGCAAAGACAAACAAA+TGG | + | chr7_3:48976774-48976793 | Msa1107430:CDS | 30.0% | |
| GATTACTGAAATGCGAAACA+TGG | - | chr7_3:48975747-48975766 | None:intergenic | 35.0% | |
| GTTTCGCATTTCAGTAATCA+TGG | + | chr7_3:48975748-48975767 | Msa1107430:five_prime_UTR | 35.0% | |
| AGAAAAAGGGATTATGTGGA+GGG | - | chr7_3:48975776-48975795 | None:intergenic | 35.0% | |
| AAGAAAAAGGGATTATGTGG+AGG | - | chr7_3:48975777-48975796 | None:intergenic | 35.0% | |
| !!! | GGATTTTGGTTAGGTTTGTT+AGG | - | chr7_3:48975815-48975834 | None:intergenic | 35.0% |
| !!! | AATGTGAAGGGATTTTGGTT+AGG | - | chr7_3:48975824-48975843 | None:intergenic | 35.0% |
| ! | GAGAAAATGTGAAGGGATTT+TGG | - | chr7_3:48975829-48975848 | None:intergenic | 35.0% |
| AAAGGGAGAGAAAATGTGAA+GGG | - | chr7_3:48975836-48975855 | None:intergenic | 35.0% | |
| AAAAGGGAGAGAAAATGTGA+AGG | - | chr7_3:48975837-48975856 | None:intergenic | 35.0% | |
| ! | CTCTCTGTTTTCATTTTCCA+TGG | + | chr7_3:48975887-48975906 | Msa1107430:exon | 35.0% |
| ! | ATTTTCCATGGCTGAGAATT+TGG | + | chr7_3:48975899-48975918 | Msa1107430:exon | 35.0% |
| AATCCATAAGGAAAAAGCAG+AGG | - | chr7_3:48976038-48976057 | None:intergenic | 35.0% | |
| ! | TTGTTCATCATCGTCACTTT+CGG | - | chr7_3:48976114-48976133 | None:intergenic | 35.0% |
| CAAAACGCAAAAACCCTAAA+AGG | - | chr7_3:48976277-48976296 | None:intergenic | 35.0% | |
| !!! | CGTTTTTATTGTCGTTTTGC+AGG | + | chr7_3:48976298-48976317 | Msa1107430:intron | 35.0% |
| ! | GTCATTTCCAAAAGCACATA+GGG | - | chr7_3:48976342-48976361 | None:intergenic | 35.0% |
| ! | AGTCATTTCCAAAAGCACAT+AGG | - | chr7_3:48976343-48976362 | None:intergenic | 35.0% |
| CATTCTCACAAACACCATTA+GGG | - | chr7_3:48976400-48976419 | None:intergenic | 35.0% | |
| TTTGGATGGTAAAGTAACAG+GGG | - | chr7_3:48976522-48976541 | None:intergenic | 35.0% | |
| CAAAAAAGCTCAAATCAGCA+GGG | - | chr7_3:48976550-48976569 | None:intergenic | 35.0% | |
| CTGAAAGACTGAACACAATA+AGG | + | chr7_3:48976721-48976740 | Msa1107430:CDS | 35.0% | |
| ATGGTTGTGGAGTTTGAATT+TGG | - | chr7_3:48976902-48976921 | None:intergenic | 35.0% | |
| ! | GTTTTCCTTGGAAATGGTTA+TGG | + | chr7_3:48976933-48976952 | Msa1107430:CDS | 35.0% |
| ATGGCTGAGAATTTGGATGA+CGG | + | chr7_3:48975906-48975925 | Msa1107430:CDS | 40.0% | |
| TTGAAAAGCGAAAGCGAAGA+AGG | - | chr7_3:48976002-48976021 | None:intergenic | 40.0% | |
| !! | TCGCTTTCGCTTTTCAACAA+TGG | + | chr7_3:48976005-48976024 | Msa1107430:CDS | 40.0% |
| !!! | GATCCTCTGCTTTTTCCTTA+TGG | + | chr7_3:48976032-48976051 | Msa1107430:CDS | 40.0% |
| ! | CTTTTTCCTTATGGATTCGC+TGG | + | chr7_3:48976041-48976060 | Msa1107430:CDS | 40.0% |
| ! | TTTGGAATCAACAAGGAGAG+AGG | - | chr7_3:48976171-48976190 | None:intergenic | 40.0% |
| GTTATGATTCTCAGAGGCTT+TGG | - | chr7_3:48976189-48976208 | None:intergenic | 40.0% | |
| !!! | TTTATTGTCGTTTTGCAGGG+AGG | + | chr7_3:48976302-48976321 | Msa1107430:intron | 40.0% |
| ! | AAAGCACATAGGGTTGATTG+TGG | - | chr7_3:48976332-48976351 | None:intergenic | 40.0% |
| ! | CAATCAACCCTATGTGCTTT+TGG | + | chr7_3:48976332-48976351 | Msa1107430:CDS | 40.0% |
| CTTGGATTGATGAACCTTTG+CGG | - | chr7_3:48976373-48976392 | None:intergenic | 40.0% | |
| GCATTCTCACAAACACCATT+AGG | - | chr7_3:48976401-48976420 | None:intergenic | 40.0% | |
| GGGGAAGAAGAATTTCTTTG+AGG | - | chr7_3:48976503-48976522 | None:intergenic | 40.0% | |
| !! | CAAATCAGCAGGGTTGTTTT+TGG | - | chr7_3:48976540-48976559 | None:intergenic | 40.0% |
| GCAAAAAAGCTCAAATCAGC+AGG | - | chr7_3:48976551-48976570 | None:intergenic | 40.0% | |
| AAGACTGAACACAATAAGGG+CGG | + | chr7_3:48976725-48976744 | Msa1107430:CDS | 40.0% | |
| CAGCAAAGACAAACAAATGG+AGG | + | chr7_3:48976777-48976796 | Msa1107430:CDS | 40.0% | |
| GGAGGAAGAAATGTTGTTGA+TGG | + | chr7_3:48976795-48976814 | Msa1107430:CDS | 40.0% | |
| AACAACAACAACAACGTTGC+TGG | + | chr7_3:48976825-48976844 | Msa1107430:CDS | 40.0% | |
| !! | AACAACAACGTTGCTGGTTT+AGG | + | chr7_3:48976831-48976850 | Msa1107430:CDS | 40.0% |
| TAGGTTTGTCATCATCTGCA+TGG | + | chr7_3:48976850-48976869 | Msa1107430:CDS | 40.0% | |
| TGTTGAGCATGTTGTAGTGT+TGG | - | chr7_3:48976876-48976895 | None:intergenic | 40.0% | |
| AGGAAAACAGCTCTCATGTA+TGG | - | chr7_3:48976921-48976940 | None:intergenic | 40.0% | |
| !! | TACATGAGAGCTGTTTTCCT+TGG | + | chr7_3:48976921-48976940 | Msa1107430:CDS | 40.0% |
| !! | AGAGCTGTTTTCCTTGGAAA+TGG | + | chr7_3:48976927-48976946 | Msa1107430:CDS | 40.0% |
| TGCTACCATAACCATTTCCA+AGG | - | chr7_3:48976941-48976960 | None:intergenic | 40.0% | |
| AATGGTTATGGTAGCAGTAC+TGG | + | chr7_3:48976945-48976964 | Msa1107430:CDS | 40.0% | |
| GTCATCCAAATTCTCAGCCA+TGG | - | chr7_3:48975907-48975926 | None:intergenic | 45.0% | |
| ! | ATTTGGATGACGGTGAGTTC+TGG | + | chr7_3:48975916-48975935 | Msa1107430:CDS | 45.0% |
| !! | AGAAGGTTTCGGTTTTGTGG+TGG | - | chr7_3:48975985-48976004 | None:intergenic | 45.0% |
| ! | CGAAGAAGGTTTCGGTTTTG+TGG | - | chr7_3:48975988-48976007 | None:intergenic | 45.0% |
| AGCGAAAGCGAAGAAGGTTT+CGG | - | chr7_3:48975996-48976015 | None:intergenic | 45.0% | |
| GAAGCAGCAAGAGAATCGAT+TGG | - | chr7_3:48976083-48976102 | None:intergenic | 45.0% | |
| !! | CAGAGGCTTTGGAATCAACA+AGG | - | chr7_3:48976178-48976197 | None:intergenic | 45.0% |
| AATGACTCCAAATGCCGCAA+AGG | + | chr7_3:48976356-48976375 | Msa1107430:CDS | 45.0% | |
| TGATGAACCTTTGCGGCATT+TGG | - | chr7_3:48976366-48976385 | None:intergenic | 45.0% | |
| CGCAAAGGTTCATCAATCCA+AGG | + | chr7_3:48976371-48976390 | Msa1107430:CDS | 45.0% | |
| TCAATCCAAGGAAGCCCTAA+TGG | + | chr7_3:48976383-48976402 | Msa1107430:CDS | 45.0% | |
| AAACACCATTAGGGCTTCCT+TGG | - | chr7_3:48976391-48976410 | None:intergenic | 45.0% | |
| !!! | TCAGCAGGGTTGTTTTTGGA+TGG | - | chr7_3:48976536-48976555 | None:intergenic | 45.0% |
| ! | GTTGGTGAATTCAGTTGCAG+AGG | + | chr7_3:48976679-48976698 | Msa1107430:intron | 45.0% |
| GAATTCAGTTGCAGAGGATG+AGG | + | chr7_3:48976685-48976704 | Msa1107430:intron | 45.0% | |
| AGACTGAACACAATAAGGGC+GGG | + | chr7_3:48976726-48976745 | Msa1107430:CDS | 45.0% | |
| CGGGTATGCAGAAGCAAAAT+GGG | + | chr7_3:48976745-48976764 | Msa1107430:CDS | 45.0% | |
| GGGTATGCAGAAGCAAAATG+GGG | + | chr7_3:48976746-48976765 | Msa1107430:CDS | 45.0% | |
| GGTATGCAGAAGCAAAATGG+GGG | + | chr7_3:48976747-48976766 | Msa1107430:CDS | 45.0% | |
| ACAGCTCTCATGTATGGTTG+TGG | - | chr7_3:48976915-48976934 | None:intergenic | 45.0% | |
| !!! | AAATTTCATATTTTTAATAA+TGG | + | chr7_3:48976629-48976648 | Msa1107430:intron | 5.0% |
| !!! | AATTTCATATTTTTAATAAT+GGG | + | chr7_3:48976630-48976649 | Msa1107430:intron | 5.0% |
| !!! | TTTTTATTAATTAATTTTGT+TGG | + | chr7_3:48976661-48976680 | Msa1107430:intron | 5.0% |
| TCAGAGCCAGCGAATCCATA+AGG | - | chr7_3:48976050-48976069 | None:intergenic | 50.0% | |
| GCGGGTATGCAGAAGCAAAA+TGG | + | chr7_3:48976744-48976763 | Msa1107430:CDS | 50.0% | |
| !! | TATGGTAGCAGTACTGGCAC+TGG | + | chr7_3:48976951-48976970 | Msa1107430:CDS | 50.0% |
| TCGTCGTCGGAGAGAAACTG+CGG | - | chr7_3:48975948-48975967 | None:intergenic | 55.0% | |
| CAGTTTCTCTCCGACGACGA+CGG | + | chr7_3:48975948-48975967 | Msa1107430:CDS | 55.0% | |
| TGTGTCATCACCGTCGTCGT+CGG | - | chr7_3:48975961-48975980 | None:intergenic | 55.0% | |
| TCGTCGGAGAGAAACTGCGG+CGG | - | chr7_3:48975945-48975964 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 48975723 | 48976986 | 48975723 | ID=Msa1107430;Name=Msa1107430 |
| chr7_3 | mRNA | 48975723 | 48976986 | 48975723 | ID=Msa1107430-mRNA-1;Parent=Msa1107430;Name=Msa1107430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=183|1|0.66|1|1|1|3|0|300 |
| chr7_3 | exon | 48975723 | 48976220 | 48975723 | ID=Msa1107430-mRNA-1:exon:9937;Parent=Msa1107430-mRNA-1 |
| chr7_3 | exon | 48976320 | 48976610 | 48976320 | ID=Msa1107430-mRNA-1:exon:9938;Parent=Msa1107430-mRNA-1 |
| chr7_3 | exon | 48976693 | 48976986 | 48976693 | ID=Msa1107430-mRNA-1:exon:9939;Parent=Msa1107430-mRNA-1 |
| chr7_3 | five_prime_UTR | 48975723 | 48975905 | 48975723 | ID=Msa1107430-mRNA-1:five_prime_utr;Parent=Msa1107430-mRNA-1 |
| chr7_3 | CDS | 48975906 | 48976220 | 48975906 | ID=Msa1107430-mRNA-1:cds;Parent=Msa1107430-mRNA-1 |
| chr7_3 | CDS | 48976320 | 48976610 | 48976320 | ID=Msa1107430-mRNA-1:cds;Parent=Msa1107430-mRNA-1 |
| chr7_3 | CDS | 48976693 | 48976986 | 48976693 | ID=Msa1107430-mRNA-1:cds;Parent=Msa1107430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
