AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111490 MtrunA17_Chr7g0246431 91.045 67 6 0 1 67 1 67 6.63e-39 130
Msa1111490 MtrunA17_Chr8g0351041 91.935 62 5 0 1 62 1 62 5.82e-37 124
Msa1111490 MtrunA17_Chr8g0351031 91.935 62 5 0 1 62 1 62 1.40e-36 125
Msa1111490 MtrunA17_Chr4g0057151 59.000 100 37 2 1 96 1 100 1.42e-33 117
Msa1111490 MtrunA17_Chr4g0061671 66.667 75 23 1 1 75 1 73 9.66e-30 106
Msa1111490 MtrunA17_Chr7g0246381 78.333 60 13 0 1 60 1 60 1.17e-28 100
Msa1111490 MtrunA17_Chr3g0077501 74.194 62 16 0 1 62 1 62 2.79e-28 103
Msa1111490 MtrunA17_Chr8g0377561 80.702 57 11 0 1 57 1 57 3.63e-28 99.8
Msa1111490 MtrunA17_Chr8g0351051 73.134 67 18 0 1 67 1 67 7.73e-28 103
Msa1111490 MtrunA17_Chr3g0097101 59.036 83 28 1 1 83 16 92 1.16e-27 102
Msa1111490 MtrunA17_Chr8g0380021 58.537 82 28 1 3 84 19 94 1.55e-27 102
Msa1111490 MtrunA17_Chr6g0455511 80.000 60 12 0 1 60 1 60 1.58e-27 102
Msa1111490 MtrunA17_Chr7g0220111 78.333 60 13 0 1 60 1 60 1.60e-27 102
Msa1111490 MtrunA17_Chr5g0420091 77.966 59 13 0 1 59 1 59 1.86e-27 101
Msa1111490 MtrunA17_Chr1g0173161 65.789 76 24 1 1 76 1 74 1.98e-27 97.4
Msa1111490 MtrunA17_Chr2g0284911 58.333 84 29 1 3 86 18 95 2.07e-27 102
Msa1111490 MtrunA17_Chr3g0122251 76.667 60 14 0 1 60 1 60 5.11e-27 101
Msa1111490 MtrunA17_Chr2g0308251 73.333 60 16 0 1 60 1 60 8.49e-27 95.9
Msa1111490 MtrunA17_Chr2g0279821 63.380 71 26 0 1 71 1 71 1.49e-26 99.8
Msa1111490 MtrunA17_Chr5g0427921 70.000 60 18 0 1 60 1 60 7.04e-26 92.8
Msa1111490 MtrunA17_Chr4g0020221 72.727 66 18 0 1 66 1 66 9.31e-26 98.2
Msa1111490 MtrunA17_Chr4g0061691 69.118 68 20 1 1 67 1 68 2.69e-25 96.3
Msa1111490 MtrunA17_Chr8g0366231 66.176 68 22 1 1 67 1 68 6.73e-25 95.5
Msa1111490 MtrunA17_Chr6g0474371 73.333 60 16 0 1 60 1 60 7.78e-25 94.4
Msa1111490 MtrunA17_Chr1g0204111 71.429 63 18 0 1 63 17 79 1.89e-24 94.7
Msa1111490 MtrunA17_Chr5g0412271 72.881 59 16 0 1 59 1 59 6.30e-24 92.8
Msa1111490 MtrunA17_Chr5g0412461 72.881 59 16 0 1 59 1 59 7.63e-24 92.4
Msa1111490 MtrunA17_Chr5g0427401 59.155 71 29 0 1 71 1 71 1.56e-23 91.7
Msa1111490 MtrunA17_Chr7g0220121 71.667 60 17 0 1 60 1 60 2.38e-23 91.7
Msa1111490 MtrunA17_Chr5g0420081 66.176 68 22 1 1 67 1 68 2.62e-23 91.3
Msa1111490 MtrunA17_Chr4g0049541 59.155 71 29 0 1 71 1 71 2.69e-23 90.9
Msa1111490 MtrunA17_Chr3g0142191 69.492 59 18 0 1 59 1 59 4.59e-23 90.5
Msa1111490 MtrunA17_Chr4g0018421 69.492 59 18 0 1 59 1 59 5.01e-23 89.7
Msa1111490 MtrunA17_Chr5g0425191 67.241 58 19 0 1 58 1 58 2.42e-22 85.1
Msa1111490 MtrunA17_Chr5g0411691 58.209 67 28 0 1 67 1 67 3.30e-22 88.6
Msa1111490 MtrunA17_Chr3g0125241 59.375 64 26 0 1 64 26 89 6.63e-22 87.0
Msa1111490 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 1.10e-21 84.0
Msa1111490 MtrunA17_Chr4g0049901 44.037 109 57 2 1 105 27 135 2.87e-21 85.9
Msa1111490 MtrunA17_Chr3g0134451 41.667 120 62 3 1 120 1 112 5.38e-21 86.7
Msa1111490 MtrunA17_Chr1g0159661 56.250 64 28 0 1 64 1 64 1.08e-20 83.2
Msa1111490 MtrunA17_Chr5g0404951 60.317 63 25 0 1 63 1 63 1.83e-20 83.6
Msa1111490 MtrunA17_Chr1g0164791 62.295 61 23 0 1 61 1 61 8.95e-20 82.0
Msa1111490 MtrunA17_Chr1g0166611 60.000 65 20 1 13 77 17 75 1.78e-19 79.0
Msa1111490 MtrunA17_Chr1g0208581 51.562 64 31 0 3 66 10 73 3.47e-16 72.4
Msa1111490 MtrunA17_Chr2g0292791 51.562 64 31 0 3 66 10 73 8.78e-16 71.2
Msa1111490 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 9.81e-16 68.9
Msa1111490 MtrunA17_Chr1g0175611 52.542 59 28 0 1 59 1 59 1.51e-15 69.3
Msa1111490 MtrunA17_Chr1g0208561 50.000 64 32 0 3 66 10 73 2.16e-15 70.1
Msa1111490 MtrunA17_Chr3g0089141 50.000 64 32 0 3 66 10 73 2.60e-15 70.1
Msa1111490 MtrunA17_Chr1g0175601 39.796 98 40 2 1 98 1 79 2.82e-15 68.9
Msa1111490 MtrunA17_Chr8g0376821 52.542 59 28 0 1 59 1 59 3.86e-15 68.6
Msa1111490 MtrunA17_Chr8g0379021 56.604 53 23 0 3 55 13 65 6.07e-15 68.2
Msa1111490 MtrunA17_Chr1g0169761 44.304 79 32 1 1 79 1 67 7.78e-15 67.8
Msa1111490 MtrunA17_Chr1g0180591 50.847 59 29 0 1 59 1 59 8.21e-15 67.8
Msa1111490 MtrunA17_Chr3g0099421 51.562 64 31 0 3 66 35 98 1.11e-14 68.9
Msa1111490 MtrunA17_Chr8g0357771 50.000 70 34 1 1 69 1 70 1.24e-14 67.4
Msa1111490 MtrunA17_Chr4g0052061 33.028 109 64 2 1 109 1 100 1.36e-14 66.6
Msa1111490 MtrunA17_Chr1g0149391 51.562 64 31 0 3 66 10 73 1.81e-14 67.8
Msa1111490 MtrunA17_Chr3g0099411 48.438 64 33 0 3 66 10 73 2.36e-14 67.4
Msa1111490 MtrunA17_Chr8g0355091 48.438 64 33 0 3 66 10 73 3.50e-14 67.0
Msa1111490 MtrunA17_Chr1g0206721 48.438 64 33 0 3 66 10 73 3.58e-14 67.0
Msa1111490 MtrunA17_Chr5g0422421 53.125 64 30 0 3 66 10 73 3.80e-14 67.0
Msa1111490 MtrunA17_Chr4g0074101 41.176 85 48 2 1 83 1 85 3.92e-14 66.2
Msa1111490 MtrunA17_Chr2g0333981 54.386 57 26 0 1 57 11 67 4.01e-14 65.9
Msa1111490 MtrunA17_Chr1g0206701 48.438 64 33 0 3 66 10 73 5.68e-14 66.6
Msa1111490 MtrunA17_Chr2g0325971 48.438 64 33 0 3 66 10 73 5.80e-14 66.2
Msa1111490 MtrunA17_Chr5g0419601 57.895 57 24 0 3 59 10 66 6.56e-14 66.2
Msa1111490 MtrunA17_Chr1g0187361 54.386 57 26 0 3 59 10 66 6.98e-14 66.2
Msa1111490 MtrunA17_Chr4g0018951 69.048 42 13 0 14 55 24 65 7.61e-14 65.1
Msa1111490 MtrunA17_Chr1g0188671 54.386 57 26 0 3 59 48 104 7.81e-14 66.6
Msa1111490 MtrunA17_Chr4g0052081 49.153 59 30 0 1 59 1 59 1.20e-13 64.7
Msa1111490 MtrunA17_Chr4g0060841 52.830 53 25 0 1 53 1 53 1.47e-13 66.2
Msa1111490 MtrunA17_Chr2g0317481 57.143 56 24 0 3 58 10 65 1.55e-13 65.5
Msa1111490 MtrunA17_Chr2g0317451 57.143 56 24 0 3 58 10 65 1.59e-13 65.5
Msa1111490 MtrunA17_Chr3g0111841 58.000 50 21 0 8 57 2 51 2.81e-13 61.2
Msa1111490 MtrunA17_Chr2g0300421 46.269 67 35 1 3 69 10 75 3.62e-13 63.2
Msa1111490 MtrunA17_Chr1g0206991 52.727 55 26 0 3 57 10 64 3.93e-13 63.5
Msa1111490 MtrunA17_Chr5g0422941 57.143 56 24 0 3 58 10 65 4.07e-13 64.3
Msa1111490 MtrunA17_Chr8g0356071 44.928 69 37 1 1 68 1 69 5.29e-12 60.1
Msa1111490 MtrunA17_Chr2g0300441 49.091 55 28 0 5 59 12 66 1.89e-11 59.7
Msa1111490 MtrunA17_Chr3g0089151 48.333 60 29 1 2 59 7 66 2.48e-11 57.4
Msa1111490 MtrunA17_Chr1g0187351 55.319 47 21 0 11 57 1 47 5.48e-11 55.1
Msa1111490 MtrunA17_Chr6g0457851 48.000 50 26 0 1 50 11 60 8.25e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111490 AT4G11880.2 98.333 60 1 0 1 60 1 60 8.93e-37 124
Msa1111490 AT4G11880.3 98.333 60 1 0 1 60 1 60 8.93e-37 124
Msa1111490 AT4G22950.2 85.075 67 10 0 1 67 1 67 2.02e-36 123
Msa1111490 AT4G11880.4 96.721 61 2 0 1 61 1 61 2.52e-36 124
Msa1111490 AT4G11880.1 96.721 61 2 0 1 61 1 61 2.52e-36 124
Msa1111490 AT2G45660.2 91.935 62 5 0 1 62 1 62 3.12e-36 122
Msa1111490 AT4G22950.3 85.075 67 10 0 1 67 1 67 2.50e-35 122
Msa1111490 AT4G22950.1 85.075 67 10 0 1 67 1 67 2.50e-35 122
Msa1111490 AT2G45660.1 91.935 62 5 0 1 62 1 62 3.53e-35 121
Msa1111490 AT5G62165.6 82.258 62 11 0 1 62 1 62 1.09e-32 113
Msa1111490 AT5G62165.9 82.258 62 11 0 1 62 1 62 1.09e-32 113
Msa1111490 AT5G62165.7 82.258 62 11 0 1 62 1 62 1.09e-32 113
Msa1111490 AT5G62165.8 82.258 62 11 0 1 62 1 62 1.09e-32 113
Msa1111490 AT5G62165.13 82.258 62 11 0 1 62 1 62 1.09e-32 113
Msa1111490 AT5G62165.17 82.258 62 11 0 1 62 1 62 1.23e-32 113
Msa1111490 AT5G62165.12 82.258 62 11 0 1 62 1 62 1.23e-32 113
Msa1111490 AT5G62165.11 82.258 62 11 0 1 62 1 62 1.23e-32 113
Msa1111490 AT5G62165.14 82.258 62 11 0 1 62 1 62 1.89e-32 111
Msa1111490 AT5G62165.10 82.258 62 11 0 1 62 1 62 1.31e-31 112
Msa1111490 AT5G62165.4 82.258 62 11 0 1 62 1 62 1.31e-31 112
Msa1111490 AT5G62165.3 82.258 62 11 0 1 62 1 62 1.44e-31 112
Msa1111490 AT5G62165.1 82.258 62 11 0 1 62 1 62 1.44e-31 112
Msa1111490 AT5G62165.2 82.258 62 11 0 1 62 1 62 1.44e-31 112
Msa1111490 AT4G09960.6 60.241 83 27 1 1 83 2 78 3.38e-29 106
Msa1111490 AT4G09960.2 60.241 83 27 1 1 83 1 77 3.44e-29 106
Msa1111490 AT4G09960.1 60.241 83 27 1 1 83 1 77 3.56e-29 106
Msa1111490 AT4G09960.5 60.241 83 27 1 1 83 11 87 5.41e-29 106
Msa1111490 AT4G09960.3 60.241 83 27 1 1 83 27 103 9.37e-29 106
Msa1111490 AT2G03710.3 78.333 60 13 0 1 60 1 60 2.72e-28 103
Msa1111490 AT2G45650.1 67.532 77 14 1 1 66 1 77 2.91e-28 104
Msa1111490 AT4G09960.4 60.241 83 27 1 1 83 96 172 6.47e-28 105
Msa1111490 AT5G15800.1 80.000 60 12 0 1 60 1 60 1.18e-27 103
Msa1111490 AT4G18960.1 69.231 65 20 0 3 67 19 83 1.72e-27 102
Msa1111490 AT2G03710.2 78.333 60 13 0 1 60 1 60 1.97e-27 102
Msa1111490 AT2G03710.1 78.333 60 13 0 1 60 1 60 2.03e-27 102
Msa1111490 AT1G24260.3 80.000 60 12 0 1 60 1 60 2.12e-27 102
Msa1111490 AT5G15800.2 80.000 60 12 0 1 60 1 60 2.23e-27 102
Msa1111490 AT5G51870.2 58.140 86 35 1 1 85 1 86 2.42e-27 100
Msa1111490 AT1G24260.1 80.000 60 12 0 1 60 1 60 3.00e-27 102
Msa1111490 AT1G24260.2 80.000 60 12 0 1 60 1 60 3.10e-27 102
Msa1111490 AT2G42830.1 67.692 65 21 0 3 67 18 82 3.46e-27 102
Msa1111490 AT5G51870.1 58.140 86 35 1 1 85 1 86 3.46e-27 100
Msa1111490 AT2G42830.2 67.692 65 21 0 3 67 18 82 3.68e-27 102
Msa1111490 AT3G57390.3 67.143 70 23 0 1 70 1 70 6.01e-27 100
Msa1111490 AT3G58780.5 67.692 65 21 0 3 67 24 88 6.04e-27 101
Msa1111490 AT3G58780.1 67.692 65 21 0 3 67 18 82 6.07e-27 101
Msa1111490 AT5G51860.2 59.036 83 32 1 1 81 1 83 6.88e-27 100
Msa1111490 AT3G58780.2 75.862 58 14 0 3 60 18 75 9.74e-27 100
Msa1111490 AT3G02310.2 75.000 60 15 0 1 60 1 60 1.09e-26 99.4
Msa1111490 AT5G51860.1 59.036 83 32 1 1 81 1 83 1.17e-26 99.8
Msa1111490 AT3G58780.3 70.312 64 19 0 3 66 18 81 1.18e-26 101
Msa1111490 AT3G57230.2 67.164 67 22 0 1 67 1 67 1.23e-26 97.8
Msa1111490 AT5G51870.4 58.140 86 35 1 1 85 1 86 1.32e-26 99.8
Msa1111490 AT3G58780.4 67.692 65 21 0 3 67 18 82 1.38e-26 101
Msa1111490 AT3G02310.1 75.000 60 15 0 1 60 1 60 1.58e-26 100
Msa1111490 AT5G51870.5 58.140 86 35 1 1 85 24 109 1.71e-26 99.0
Msa1111490 AT5G51870.3 58.140 86 35 1 1 85 11 96 1.87e-26 99.8
Msa1111490 AT3G57390.1 67.143 70 23 0 1 70 1 70 1.98e-26 100
Msa1111490 AT3G57230.1 67.164 67 22 0 1 67 1 67 3.18e-26 99.4
Msa1111490 AT3G57230.4 67.164 67 22 0 1 67 1 67 3.18e-26 99.4
Msa1111490 AT5G13790.1 68.571 70 22 0 1 70 1 70 5.03e-26 99.4
Msa1111490 AT5G13790.2 68.571 70 22 0 1 70 1 70 5.10e-26 99.4
Msa1111490 AT3G61120.1 76.271 59 14 0 1 59 1 59 1.65e-25 97.4
Msa1111490 AT5G60910.1 67.647 68 21 1 1 67 1 68 2.11e-25 97.1
Msa1111490 AT1G69120.2 66.176 68 22 1 1 67 1 68 3.44e-25 96.3
Msa1111490 AT1G69120.1 66.176 68 22 1 1 67 1 68 8.75e-25 95.9
Msa1111490 AT1G26310.1 66.176 68 22 1 1 67 1 68 1.75e-24 95.1
Msa1111490 AT3G30260.1 71.186 59 17 0 1 59 1 59 2.97e-24 94.4
Msa1111490 AT4G37940.4 60.563 71 28 0 1 71 1 71 3.68e-24 93.2
Msa1111490 AT4G37940.1 58.108 74 31 0 1 74 1 74 4.31e-24 93.6
Msa1111490 AT2G22540.3 67.164 67 22 0 1 67 1 67 6.63e-24 93.2
Msa1111490 AT2G22540.1 67.164 67 22 0 1 67 1 67 6.63e-24 93.2
Msa1111490 AT4G37940.3 60.563 71 28 0 1 71 1 71 9.54e-24 91.3
Msa1111490 AT2G14210.1 68.852 61 19 0 1 61 1 61 1.94e-23 92.0
Msa1111490 AT2G14210.2 70.000 60 18 0 1 60 1 60 2.31e-23 91.7
Msa1111490 AT1G71692.1 69.492 59 18 0 1 59 1 59 3.65e-23 90.5
Msa1111490 AT4G24540.1 71.667 60 17 0 1 60 1 60 9.19e-23 89.7
Msa1111490 AT3G54340.1 64.062 64 23 0 1 64 1 64 1.28e-22 89.7
Msa1111490 AT5G10140.2 69.492 59 18 0 1 59 1 59 3.21e-22 87.0
Msa1111490 AT5G10140.4 60.811 74 28 1 1 73 1 74 4.14e-22 87.0
Msa1111490 AT5G10140.1 60.811 74 28 1 1 73 1 74 4.29e-22 87.4
Msa1111490 AT5G10140.3 69.492 59 18 0 1 59 1 59 7.11e-22 86.7
Msa1111490 AT5G20240.2 66.667 57 19 0 1 57 1 57 1.36e-21 85.1
Msa1111490 AT2G22540.2 70.175 57 17 0 1 57 1 57 1.65e-21 87.0
Msa1111490 AT2G22630.1 59.701 67 27 0 1 67 1 67 2.00e-21 86.7
Msa1111490 AT2G22630.2 59.701 67 27 0 1 67 1 67 2.00e-21 86.7
Msa1111490 AT5G20240.1 66.667 57 19 0 1 57 1 57 5.70e-21 84.7
Msa1111490 AT1G22130.1 67.241 58 19 0 1 58 1 58 1.73e-20 85.9
Msa1111490 AT5G23260.3 65.000 60 21 0 1 60 1 60 2.77e-20 83.6
Msa1111490 AT5G23260.2 65.000 60 21 0 1 60 1 60 3.54e-20 83.6
Msa1111490 AT1G77980.1 65.517 58 20 0 1 58 1 58 3.59e-20 84.7
Msa1111490 AT5G23260.1 65.000 60 21 0 1 60 17 76 4.12e-20 83.6
Msa1111490 AT5G23260.4 65.000 60 21 0 1 60 17 76 4.48e-20 83.6
Msa1111490 AT5G65070.4 64.407 59 21 0 1 59 1 59 4.85e-20 80.9
Msa1111490 AT5G65070.1 64.407 59 21 0 1 59 1 59 1.50e-19 80.9
Msa1111490 AT5G65070.5 64.407 59 21 0 1 59 1 59 2.81e-19 80.5
Msa1111490 AT5G65070.2 64.407 59 21 0 1 59 1 59 3.63e-19 80.5
Msa1111490 AT5G65070.3 64.407 59 21 0 1 59 1 59 5.33e-19 80.1
Msa1111490 AT5G65050.2 57.627 59 25 0 1 59 1 59 2.49e-18 77.4
Msa1111490 AT5G65050.1 57.627 59 25 0 1 59 1 59 7.13e-18 76.3
Msa1111490 AT5G65050.5 57.627 59 25 0 1 59 1 59 8.08e-18 76.3
Msa1111490 AT5G65050.3 57.627 59 25 0 1 59 1 59 8.74e-18 76.3
Msa1111490 AT5G65080.2 48.718 78 40 0 1 78 8 85 5.73e-17 74.3
Msa1111490 AT1G77950.3 58.621 58 24 0 1 58 1 58 9.15e-17 74.7
Msa1111490 AT1G77950.2 58.621 58 24 0 1 58 1 58 9.15e-17 74.7
Msa1111490 AT1G77950.1 58.621 58 24 0 1 58 1 58 9.15e-17 74.7
Msa1111490 AT1G77950.4 58.621 58 24 0 1 58 1 58 9.15e-17 74.7
Msa1111490 AT5G65080.3 61.017 59 23 0 1 59 8 66 1.31e-16 73.2
Msa1111490 AT5G65060.3 55.932 59 26 0 1 59 1 59 1.62e-16 72.8
Msa1111490 AT5G65060.2 55.932 59 26 0 1 59 1 59 2.20e-16 72.4
Msa1111490 AT5G65060.1 55.932 59 26 0 1 59 1 59 2.43e-16 72.4
Msa1111490 AT1G31140.1 55.000 60 27 0 1 60 1 60 2.94e-16 72.8
Msa1111490 AT1G31140.2 55.000 60 27 0 1 60 1 60 3.04e-16 72.8
Msa1111490 AT4G37435.1 56.667 60 26 0 1 60 1 60 3.77e-16 71.6
Msa1111490 AT1G18750.4 50.000 64 30 1 1 62 1 64 5.25e-15 70.9
Msa1111490 AT1G18750.1 50.000 64 30 1 1 62 1 64 6.30e-15 70.9
Msa1111490 AT1G77080.12 54.667 75 34 0 1 75 1 75 6.78e-15 67.8
Msa1111490 AT1G18750.3 50.000 64 30 1 1 62 1 64 7.31e-15 70.5
Msa1111490 AT2G03060.3 56.604 53 23 0 1 53 1 53 7.42e-15 70.5
Msa1111490 AT2G03060.7 56.604 53 23 0 1 53 1 53 7.42e-15 70.5
Msa1111490 AT2G03060.1 56.604 53 23 0 1 53 1 53 7.42e-15 70.5
Msa1111490 AT2G03060.2 56.604 53 23 0 1 53 1 53 8.06e-15 70.5
Msa1111490 AT1G77080.11 61.017 59 23 0 1 59 1 59 8.67e-15 68.2
Msa1111490 AT3G66656.1 52.632 57 27 0 1 57 1 57 9.80e-15 67.8
Msa1111490 AT1G77080.5 61.017 59 23 0 1 59 1 59 9.81e-15 67.8
Msa1111490 AT1G77080.2 54.667 75 34 0 1 75 1 75 1.23e-14 67.8
Msa1111490 AT1G01530.1 56.364 55 24 0 3 57 8 62 1.43e-14 68.6
Msa1111490 AT1G77080.4 61.017 59 23 0 1 59 1 59 2.20e-14 67.4
Msa1111490 AT2G34440.1 47.619 63 33 0 1 63 1 63 2.91e-14 66.6
Msa1111490 AT1G77080.8 61.017 59 23 0 1 59 1 59 5.73e-14 66.6
Msa1111490 AT4G36590.1 58.182 55 23 0 3 57 8 62 8.29e-14 66.6
Msa1111490 AT1G69540.1 52.830 53 25 0 1 53 1 53 1.50e-13 66.6
Msa1111490 AT1G69540.2 52.830 53 25 0 1 53 1 53 1.64e-13 66.6
Msa1111490 AT5G60440.1 46.875 64 34 0 3 66 8 71 8.37e-13 64.3
Msa1111490 AT1G47760.1 38.889 72 44 0 1 72 1 72 3.84e-12 61.2
Msa1111490 AT2G24840.1 48.438 64 33 0 3 66 64 127 4.69e-12 62.0
Msa1111490 AT1G72350.1 54.386 57 26 0 3 59 44 100 6.13e-12 61.2
Msa1111490 AT1G65360.1 43.750 64 36 0 3 66 8 71 6.33e-12 61.2
Msa1111490 AT3G04100.1 46.552 58 31 0 5 62 17 74 2.74e-11 59.3

Find 40 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTGGGTTGGGCTGGGC+TGG 0.142145 7_3:+57190532 None:intergenic
TATGACTTGTTGGGTTGGGC+TGG 0.226652 7_3:+57190527 None:intergenic
TTGTTGGGTTGGGCTGGGCT+GGG 0.286975 7_3:+57190533 None:intergenic
ATGACTTGTTGGGTTGGGCT+GGG 0.292817 7_3:+57190528 None:intergenic
TTAATAAGAGATTGAGATAA+AGG 0.323923 7_3:+57194682 None:intergenic
GATAGAGAAATTAATCAAAA+TGG 0.353016 7_3:-57194176 Msa1111490:exon
CCGCTCCAAGCTGAGAGTTT+CGG 0.369777 7_3:+57190582 None:intergenic
TCTGAGGTTGTGACTAGAAA+AGG 0.371239 7_3:+57194633 None:intergenic
ATGGGACTAAGGCGAAATCT+TGG 0.414464 7_3:+57190607 None:intergenic
TGGCTATGACTTGTTGGGTT+GGG 0.424009 7_3:+57190523 None:intergenic
CGGGCAAGCCAACTTATTGC+AGG 0.443108 7_3:-57190562 Msa1111490:CDS
GGCTGCTTCCTGCAATAAGT+TGG 0.458787 7_3:+57190554 None:intergenic
CGAAACTCTCAGCTTGGAGC+GGG 0.464862 7_3:-57190581 Msa1111490:CDS
TGGGACTAAGGCGAAATCTT+GGG 0.490460 7_3:+57190608 None:intergenic
CCGAAACTCTCAGCTTGGAG+CGG 0.494803 7_3:-57190582 Msa1111490:CDS
ATGGCTATGACTTGTTGGGT+TGG 0.495041 7_3:+57190522 None:intergenic
ACTAGAAAAGGGAAGAAAGA+AGG 0.495496 7_3:+57194645 None:intergenic
CTGAGGTTGTGACTAGAAAA+GGG 0.501914 7_3:+57194634 None:intergenic
CAAGTACTAATAAAGACAAA+AGG 0.505191 7_3:+57190878 None:intergenic
GAGTTTCGGCCATGGGACTA+AGG 0.510081 7_3:+57190596 None:intergenic
ATAACATGGCTATGACTTGT+TGG 0.514230 7_3:+57190517 None:intergenic
CACGCAGTGCCCTCTCGTCT+AGG 0.519575 7_3:-57190641 Msa1111490:CDS
AAGCTGAGAGTTTCGGCCAT+GGG 0.526720 7_3:+57190589 None:intergenic
TACTCAAGTAGTTGTTGAGA+AGG 0.529010 7_3:+57194577 None:intergenic
CACAGAACAACGAATACCTC+TGG 0.540259 7_3:+57190674 None:intergenic
CATGGCCGAAACTCTCAGCT+TGG 0.547475 7_3:-57190587 Msa1111490:CDS
AAGATTTCGCCTTAGTCCCA+TGG 0.548978 7_3:-57190605 Msa1111490:CDS
TAACATGGCTATGACTTGTT+GGG 0.555793 7_3:+57190518 None:intergenic
GAGAGGGCACTGCGTGAGGT+TGG 0.556727 7_3:+57190648 None:intergenic
CAAGCTGAGAGTTTCGGCCA+TGG 0.562007 7_3:+57190588 None:intergenic
ACTCAAGTAGTTGTTGAGAA+GGG 0.566977 7_3:+57194578 None:intergenic
AGACGAGAGGGCACTGCGTG+AGG 0.575012 7_3:+57190644 None:intergenic
ACAACGAATACCTCTGGCAG+TGG 0.576592 7_3:+57190680 None:intergenic
ACGAATACCTCTGGCAGTGG+AGG 0.586466 7_3:+57190683 None:intergenic
CTCTTGACTCCTAGACGAGA+GGG 0.604102 7_3:+57190632 None:intergenic
CGAATACCTCTGGCAGTGGA+GGG 0.612237 7_3:+57190684 None:intergenic
TGTAATCCCTCCACTGCCAG+AGG 0.635693 7_3:-57190690 Msa1111490:CDS
GGAGCATCAAAGTGATAACA+TGG 0.640933 7_3:+57190503 None:intergenic
AAATTAATCAAAATGGTGAG+AGG 0.642503 7_3:-57194169 Msa1111490:exon
TCTCTTGACTCCTAGACGAG+AGG 0.654294 7_3:+57190631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAATAATTTA+GGG + chr7_3:57191287-57191306 None:intergenic 0.0%
!! AAAAAATTAAAAAATAATTT+AGG + chr7_3:57191288-57191307 None:intergenic 0.0%
!! TATATATATATATATATAAT+AGG - chr7_3:57191522-57191541 Msa1111490:intron 0.0%
!! ATATATATATATATATAATA+GGG - chr7_3:57191523-57191542 Msa1111490:intron 0.0%
!! TTATATTTAATTATAATAAT+AGG - chr7_3:57192546-57192565 Msa1111490:intron 0.0%
!!! AATTAAATATTATTTTTTTA+GGG + chr7_3:57193161-57193180 None:intergenic 0.0%
!!! AAATTAAATATTATTTTTTT+AGG + chr7_3:57193162-57193181 None:intergenic 0.0%
!! ATTAAATTTATTTAAATTAT+AGG - chr7_3:57193182-57193201 Msa1111490:intron 0.0%
!!! TAAATAATTTTAGTTTCAAA+TGG - chr7_3:57190856-57190875 Msa1111490:intron 10.0%
!! AATAATAATAATCATTTCAT+TGG + chr7_3:57192290-57192309 None:intergenic 10.0%
!! AATAATAATATATAACTGTT+TGG + chr7_3:57192872-57192891 None:intergenic 10.0%
!!! TTTTTTACTAAAAATAGTAA+AGG + chr7_3:57193087-57193106 None:intergenic 10.0%
!! GTAAAATAAATAAATTAGTT+AGG + chr7_3:57194257-57194276 None:intergenic 10.0%
!!! TTTATTTAAAATCAATTTTC+AGG + chr7_3:57194415-57194434 None:intergenic 10.0%
!!! TTTTCTTTTGTTTCTTATTT+AGG + chr7_3:57190748-57190767 None:intergenic 15.0%
!! CAAAGTAGAAATATAAATTA+TGG + chr7_3:57190792-57190811 None:intergenic 15.0%
!! TATATATATATACACACATA+TGG + chr7_3:57191478-57191497 None:intergenic 15.0%
!! TTGTAATTGCTATAATAATA+AGG + chr7_3:57192429-57192448 None:intergenic 15.0%
!! AAAAAAGAAACAAATTTAGT+TGG + chr7_3:57192734-57192753 None:intergenic 15.0%
!! ATTATTAGTTCACATTATAT+TGG - chr7_3:57192886-57192905 Msa1111490:intron 15.0%
!!! TTTAAAGATTAATTTTCACA+AGG - chr7_3:57194224-57194243 Msa1111490:intron 15.0%
!!! TTAAAGATTAATTTTCACAA+GGG - chr7_3:57194225-57194244 Msa1111490:intron 15.0%
!!! TATCAGTTTTATTAAAATGA+TGG - chr7_3:57194483-57194502 Msa1111490:intron 15.0%
!! TTAATAAGAGATTGAGATAA+AGG + chr7_3:57190565-57190584 None:intergenic 20.0%
!! GATAGAGAAATTAATCAAAA+TGG - chr7_3:57191068-57191087 Msa1111490:intron 20.0%
!!! TCACATACTTTTATAGTTTA+TGG + chr7_3:57191765-57191784 None:intergenic 20.0%
!! TACAATATTCTAATTGATTG+AGG - chr7_3:57191816-57191835 Msa1111490:intron 20.0%
!! AGCAAAAATATATAGTGAAA+AGG - chr7_3:57192159-57192178 Msa1111490:intron 20.0%
!! ATAATAATCATTTCATTGGT+GGG + chr7_3:57192286-57192305 None:intergenic 20.0%
!! AATAATAATCATTTCATTGG+TGG + chr7_3:57192287-57192306 None:intergenic 20.0%
!!! AAGTTATATATCAGTTTTGT+AGG + chr7_3:57192385-57192404 None:intergenic 20.0%
!! TTCTTCTTCATATATATGTT+TGG - chr7_3:57192755-57192774 Msa1111490:intron 20.0%
!! TTCAAAAGAGTTATCTAATA+TGG - chr7_3:57193004-57193023 Msa1111490:intron 20.0%
!!! AAAATATTTTTGCTCTCATA+GGG + chr7_3:57193407-57193426 None:intergenic 20.0%
!!! TTTTTACCAATGAAAAGTTT+AGG + chr7_3:57193800-57193819 None:intergenic 20.0%
!!! AAAATTATTGAAAGAGTACA+AGG - chr7_3:57194136-57194155 Msa1111490:CDS 20.0%
!! TAAATAAATTAGTTAGGCTT+TGG + chr7_3:57194251-57194270 None:intergenic 20.0%
!!! AAAAAGATATTTCAAGTCTT+AGG - chr7_3:57194440-57194459 Msa1111490:intron 20.0%
!! TTATTAAAATGATGGTTCAA+AGG - chr7_3:57194491-57194510 Msa1111490:intron 20.0%
!! GATGTTTTTCATCTTTGATT+TGG - chr7_3:57190918-57190937 Msa1111490:intron 25.0%
! AAATTAATCAAAATGGTGAG+AGG - chr7_3:57191075-57191094 Msa1111490:intron 25.0%
! ACATTCTCAAAAAGAAGAAA+TGG - chr7_3:57191144-57191163 Msa1111490:intron 25.0%
!! AATTCATAAAGTTTTCCTCT+TGG + chr7_3:57191237-57191256 None:intergenic 25.0%
! ATAATTTCATGCACACTTAT+TGG - chr7_3:57191442-57191461 Msa1111490:intron 25.0%
! TCATAATTAATTAACCACAG+TGG - chr7_3:57191584-57191603 Msa1111490:intron 25.0%
! AAAATCCTGATTACTTTAAG+AGG - chr7_3:57191718-57191737 Msa1111490:intron 25.0%
!! AAATCCTGATTACTTTAAGA+GGG - chr7_3:57191719-57191738 Msa1111490:intron 25.0%
!! ACTTTTATAGTTTATGGCTA+GGG + chr7_3:57191759-57191778 None:intergenic 25.0%
!! TACTTTTATAGTTTATGGCT+AGG + chr7_3:57191760-57191779 None:intergenic 25.0%
!! TGTAAACAAGTGAAGTTTTT+CGG - chr7_3:57192047-57192066 Msa1111490:intron 25.0%
! TCTATATATTGAGATGTCTA+AGG - chr7_3:57192659-57192678 Msa1111490:intron 25.0%
! CTATATATTGAGATGTCTAA+GGG - chr7_3:57192660-57192679 Msa1111490:intron 25.0%
! GAATTGAATATTCGGTTTAA+TGG + chr7_3:57192708-57192727 None:intergenic 25.0%
!!! GTTGGTTTGAATTGAATATT+CGG + chr7_3:57192716-57192735 None:intergenic 25.0%
! ACATAAGCTACAATGAAAAA+AGG + chr7_3:57192956-57192975 None:intergenic 25.0%
! ATTATTGTGTGTGTCTAATA+TGG - chr7_3:57193034-57193053 Msa1111490:intron 25.0%
!!! TCATTTTGATCACTTATAAG+AGG + chr7_3:57193061-57193080 None:intergenic 25.0%
! TTAAATTATAGGTCCACATT+TGG - chr7_3:57193193-57193212 Msa1111490:intron 25.0%
! TAAATTATAGGTCCACATTT+GGG - chr7_3:57193194-57193213 Msa1111490:intron 25.0%
! GTAAATAGGACTATCTAATA+TGG + chr7_3:57193226-57193245 None:intergenic 25.0%
!! GAATTTTATGATCTTTTGTC+AGG + chr7_3:57193289-57193308 None:intergenic 25.0%
!!! GGTTAGTTTAATTCACTTTT+TGG + chr7_3:57193355-57193374 None:intergenic 25.0%
! GAAAAGAAATGACATCTATA+AGG + chr7_3:57193385-57193404 None:intergenic 25.0%
!!! GAAAATATTTTTGCTCTCAT+AGG + chr7_3:57193408-57193427 None:intergenic 25.0%
! CCACTTATATCAGTAAATAT+GGG + chr7_3:57193470-57193489 None:intergenic 25.0%
! CCATATTTACTGATATAAGT+GGG - chr7_3:57193468-57193487 Msa1111490:intron 25.0%
! TTATCAACAATCTTTGTCAT+TGG + chr7_3:57194199-57194218 None:intergenic 25.0%
! CAAGTACTAATAAAGACAAA+AGG + chr7_3:57194369-57194388 None:intergenic 25.0%
!!! TAAAATCAATTTTCAGGCAT+CGG + chr7_3:57194409-57194428 None:intergenic 25.0%
! CAGTTCTTTTCTCTCTTTTT+GGG - chr7_3:57190534-57190553 Msa1111490:CDS 30.0%
! TCTGATTTTACACACGAAAT+TGG + chr7_3:57190643-57190662 None:intergenic 30.0%
ATATGAGCTAGTTCATTACA+TGG + chr7_3:57190966-57190985 None:intergenic 30.0%
!! TTTATGAATTTTCAAGCTCC+TGG - chr7_3:57191247-57191266 Msa1111490:intron 30.0%
! AGGGTATTTAATTACTTACC+AGG + chr7_3:57191268-57191287 None:intergenic 30.0%
CAAATGATATAGCATGAAGA+GGG + chr7_3:57191412-57191431 None:intergenic 30.0%
ACAAATGATATAGCATGAAG+AGG + chr7_3:57191413-57191432 None:intergenic 30.0%
!!! ACTTTTGAGGTTACAGAAAA+AGG + chr7_3:57191657-57191676 None:intergenic 30.0%
TTATCCCTCTTAAAGTAATC+AGG + chr7_3:57191726-57191745 None:intergenic 30.0%
TGAATATGTCTCAAGTAGTT+CGG - chr7_3:57191918-57191937 Msa1111490:intron 30.0%
CTTAATTTCTTTACTAGGGT+GGG - chr7_3:57192071-57192090 Msa1111490:intron 30.0%
TTAATTTCTTTACTAGGGTG+GGG - chr7_3:57192072-57192091 Msa1111490:intron 30.0%
! AACGTTTGGAATCTAATCAA+GGG - chr7_3:57192106-57192125 Msa1111490:intron 30.0%
TTATTAATGAGCATCAGGAT+TGG + chr7_3:57192140-57192159 None:intergenic 30.0%
TTTGCTTATTAATGAGCATC+AGG + chr7_3:57192145-57192164 None:intergenic 30.0%
TACTTGATTTCTTGAGTAGT+GGG - chr7_3:57192187-57192206 Msa1111490:intron 30.0%
! TTTTGAATGTAGTCTAGTCA+AGG + chr7_3:57192619-57192638 None:intergenic 30.0%
ATTCGGTTTAATGGAATCAT+TGG + chr7_3:57192699-57192718 None:intergenic 30.0%
TAGACACACACAATAATAAG+AGG + chr7_3:57193031-57193050 None:intergenic 30.0%
!! GAGTTGATTTGGTAGTAAAT+AGG + chr7_3:57193240-57193259 None:intergenic 30.0%
CCCATATTTACTGATATAAG+TGG - chr7_3:57193467-57193486 Msa1111490:intron 30.0%
CCCACTTATATCAGTAAATA+TGG + chr7_3:57193471-57193490 None:intergenic 30.0%
ACCTACAAGATCAATATAAG+TGG - chr7_3:57193566-57193585 Msa1111490:intron 30.0%
CCTACAAGATCAATATAAGT+GGG - chr7_3:57193567-57193586 Msa1111490:intron 30.0%
! AACTCACCTAAACTTTTCAT+TGG - chr7_3:57193791-57193810 Msa1111490:intron 30.0%
AGAGATCTTATACTGTTTCA+TGG - chr7_3:57193861-57193880 Msa1111490:intron 30.0%
GAGATCTTATACTGTTTCAT+GGG - chr7_3:57193862-57193881 Msa1111490:intron 30.0%
CAGTATAATGCATATTCTGA+CGG + chr7_3:57193977-57193996 None:intergenic 30.0%
TATGCATTATACTGTACGTT+TGG - chr7_3:57193983-57194002 Msa1111490:intron 30.0%
!! TCTTGCTATAACTGTTTTTC+TGG - chr7_3:57194023-57194042 Msa1111490:CDS 30.0%
! GCAGTTCTTTTCTCTCTTTT+TGG - chr7_3:57190533-57190552 Msa1111490:CDS 35.0%
ACTAGAAAAGGGAAGAAAGA+AGG + chr7_3:57190602-57190621 None:intergenic 35.0%
ACGAAATTGGCAAAAATCTG+AGG + chr7_3:57190630-57190649 None:intergenic 35.0%
ACTCAAGTAGTTGTTGAGAA+GGG + chr7_3:57190669-57190688 None:intergenic 35.0%
TACTCAAGTAGTTGTTGAGA+AGG + chr7_3:57190670-57190689 None:intergenic 35.0%
!!! TACTTGTTTTTGCTGCTGTT+AGG - chr7_3:57190697-57190716 Msa1111490:CDS 35.0%
! CTTATCATCTTTTCTCCAAG+AGG - chr7_3:57191219-57191238 Msa1111490:intron 35.0%
! TGTAACCTCAAAAGTACAGT+GGG - chr7_3:57191662-57191681 Msa1111490:intron 35.0%
TCGGCCTTAATTTCTTTACT+AGG - chr7_3:57192066-57192085 Msa1111490:intron 35.0%
CGGCCTTAATTTCTTTACTA+GGG - chr7_3:57192067-57192086 Msa1111490:intron 35.0%
CCACCCTAGTAAAGAAATTA+AGG + chr7_3:57192073-57192092 None:intergenic 35.0%
CCTTAATTTCTTTACTAGGG+TGG - chr7_3:57192070-57192089 Msa1111490:intron 35.0%
! CAACGTTTGGAATCTAATCA+AGG - chr7_3:57192105-57192124 Msa1111490:intron 35.0%
! ACGTTTGGAATCTAATCAAG+GGG - chr7_3:57192107-57192126 Msa1111490:intron 35.0%
GTACTTGATTTCTTGAGTAG+TGG - chr7_3:57192186-57192205 Msa1111490:intron 35.0%
!! GAGTAGTGGGTTATATATAG+AGG - chr7_3:57192200-57192219 Msa1111490:intron 35.0%
TTATGAGAGACGTAAGAGAA+AGG - chr7_3:57192234-57192253 Msa1111490:intron 35.0%
TATGAGAGACGTAAGAGAAA+GGG - chr7_3:57192235-57192254 Msa1111490:intron 35.0%
!!! CGGTTTTGATTGGTTTAGTT+CGG + chr7_3:57192789-57192808 None:intergenic 35.0%
CGAACTAAACCAATCAAAAC+CGG - chr7_3:57192787-57192806 Msa1111490:intron 35.0%
ATATCCAAACCAATCGAAAC+CGG + chr7_3:57192809-57192828 None:intergenic 35.0%
!! CGATGAAGAATGAGTTGATT+TGG + chr7_3:57193251-57193270 None:intergenic 35.0%
! CAACTCATTCTTCATCGATT+TGG - chr7_3:57193254-57193273 Msa1111490:intron 35.0%
TGACATCTATAAGGTGTAAC+AGG + chr7_3:57193376-57193395 None:intergenic 35.0%
CCCACTTATATTGATCTTGT+AGG + chr7_3:57193570-57193589 None:intergenic 35.0%
ATCTCATGTTCAGTCAATGA+AGG - chr7_3:57193615-57193634 Msa1111490:intron 35.0%
AGTTAAACTCCTGATCTTGT+AGG + chr7_3:57193669-57193688 None:intergenic 35.0%
! ATAAGTTTTCACATCAGCAG+CGG + chr7_3:57193693-57193712 None:intergenic 35.0%
CATATGCTCTTTAAACCTTG+AGG - chr7_3:57193732-57193751 Msa1111490:intron 35.0%
CATGCTATGCTTCAAGTATT+GGG + chr7_3:57193912-57193931 None:intergenic 35.0%
TCATGCTATGCTTCAAGTAT+TGG + chr7_3:57193913-57193932 None:intergenic 35.0%
! TTATACTGTACGTTTGGCTT+CGG - chr7_3:57193989-57194008 Msa1111490:intron 35.0%
! ATGATGAGGTTTGGTATGTA+TGG - chr7_3:57194299-57194318 Msa1111490:intron 35.0%
AAAATGATGGTTCAAAGGCT+AGG - chr7_3:57194496-57194515 Msa1111490:intron 35.0%
!! TAACATGGCTATGACTTGTT+GGG + chr7_3:57194729-57194748 None:intergenic 35.0%
! ATAACATGGCTATGACTTGT+TGG + chr7_3:57194730-57194749 None:intergenic 35.0%
CTGAGGTTGTGACTAGAAAA+GGG + chr7_3:57190613-57190632 None:intergenic 40.0%
! TCTGAGGTTGTGACTAGAAA+AGG + chr7_3:57190614-57190633 None:intergenic 40.0%
!! ACCACAGTGGTTGATTTGAT+AGG - chr7_3:57191597-57191616 Msa1111490:intron 40.0%
TCCTATCAAATCAACCACTG+TGG + chr7_3:57191601-57191620 None:intergenic 40.0%
! CTGTAACCTCAAAAGTACAG+TGG - chr7_3:57191661-57191680 Msa1111490:intron 40.0%
! GTAACCTCAAAAGTACAGTG+GGG - chr7_3:57191663-57191682 Msa1111490:intron 40.0%
TCATAGACGCATTTAACGAG+TGG - chr7_3:57192022-57192041 Msa1111490:intron 40.0%
CATAGACGCATTTAACGAGT+GGG - chr7_3:57192023-57192042 Msa1111490:intron 40.0%
TAATGAGCATCAGGATTGGA+AGG + chr7_3:57192136-57192155 None:intergenic 40.0%
ATCATTTCATTGGTGGGAAG+AGG + chr7_3:57192280-57192299 None:intergenic 40.0%
!! CAATCGAAACCGGTTTTGAT+TGG + chr7_3:57192799-57192818 None:intergenic 40.0%
! CAATCAAAACCGGTTTCGAT+TGG - chr7_3:57192797-57192816 Msa1111490:intron 40.0%
! AAAACCGGTTTCGATTGGTT+TGG - chr7_3:57192802-57192821 Msa1111490:intron 40.0%
TTATAGGTCCACATTTGGGT+CGG - chr7_3:57193198-57193217 Msa1111490:intron 40.0%
ATCTCCTGTTCAGTCAATGA+AGG - chr7_3:57193516-57193535 Msa1111490:intron 40.0%
! TCAACCTTCATTGACTGAAC+AGG + chr7_3:57193523-57193542 None:intergenic 40.0%
AAAAACATGACGCGATGATG+AGG - chr7_3:57194285-57194304 Msa1111490:intron 40.0%
!!! CATTTTTAGCCCACTAAGCT+TGG + chr7_3:57194526-57194545 None:intergenic 40.0%
!! TTAGTGGGCTAAAAATGCAG+TGG - chr7_3:57194529-57194548 Msa1111490:intron 40.0%
TCTTTACTAGGGTGGGGTTA+AGG - chr7_3:57192078-57192097 Msa1111490:intron 45.0%
CTTTACTAGGGTGGGGTTAA+GGG - chr7_3:57192079-57192098 Msa1111490:intron 45.0%
GGGTTAAGGGTTTCAACGTT+TGG - chr7_3:57192092-57192111 Msa1111490:intron 45.0%
ATATGGAACCGACCCAAATG+TGG + chr7_3:57193209-57193228 None:intergenic 45.0%
! GTTGACTCACCTACAAGATC+AGG - chr7_3:57193558-57193577 Msa1111490:intron 45.0%
AACCTTGATGAGTTTCCCTC+CGG - chr7_3:57193763-57193782 Msa1111490:intron 45.0%
! AGTTTAGGTGAGTTGAGCTC+CGG + chr7_3:57193785-57193804 None:intergenic 45.0%
! ACGTGTGCTCTCAAGTTTTG+CGG - chr7_3:57194339-57194358 Msa1111490:intron 45.0%
CACAGAACAACGAATACCTC+TGG + chr7_3:57194573-57194592 None:intergenic 45.0%
TGGGACTAAGGCGAAATCTT+GGG + chr7_3:57194639-57194658 None:intergenic 45.0%
ATGGGACTAAGGCGAAATCT+TGG + chr7_3:57194640-57194659 None:intergenic 45.0%
AAGATTTCGCCTTAGTCCCA+TGG - chr7_3:57194639-57194658 Msa1111490:five_prime_UTR 45.0%
!! TGGCTATGACTTGTTGGGTT+GGG + chr7_3:57194724-57194743 None:intergenic 45.0%
!! ATGGCTATGACTTGTTGGGT+TGG + chr7_3:57194725-57194744 None:intergenic 45.0%
!!! ATTAAATATTATTTTTTTAG+GGG + chr7_3:57193160-57193179 None:intergenic 5.0%
! CACACCCCACTGTACTTTTG+AGG + chr7_3:57191670-57191689 None:intergenic 50.0%
CAAGGTTGTGTCAGACCTCA+AGG + chr7_3:57193750-57193769 None:intergenic 50.0%
CATGACGCGATGATGAGGTT+TGG - chr7_3:57194290-57194309 Msa1111490:intron 50.0%
CTAGGCTCACCAAGCTTAGT+GGG - chr7_3:57194514-57194533 Msa1111490:intron 50.0%
ACAACGAATACCTCTGGCAG+TGG + chr7_3:57194567-57194586 None:intergenic 50.0%
CTCTTGACTCCTAGACGAGA+GGG + chr7_3:57194615-57194634 None:intergenic 50.0%
TCTCTTGACTCCTAGACGAG+AGG + chr7_3:57194616-57194635 None:intergenic 50.0%
AAGCTGAGAGTTTCGGCCAT+GGG + chr7_3:57194658-57194677 None:intergenic 50.0%
GGCTGCTTCCTGCAATAAGT+TGG + chr7_3:57194693-57194712 None:intergenic 50.0%
!! ATGACTTGTTGGGTTGGGCT+GGG + chr7_3:57194719-57194738 None:intergenic 50.0%
!! TATGACTTGTTGGGTTGGGC+TGG + chr7_3:57194720-57194739 None:intergenic 50.0%
GAGTGTACGACGTGAGAGAG+TGG - chr7_3:57192588-57192607 Msa1111490:intron 55.0%
CTCCGGAGGGAAACTCATCA+AGG + chr7_3:57193768-57193787 None:intergenic 55.0%
! TAGGTGAGTTGAGCTCCGGA+GGG + chr7_3:57193781-57193800 None:intergenic 55.0%
! TTAGGTGAGTTGAGCTCCGG+AGG + chr7_3:57193782-57193801 None:intergenic 55.0%
AGCACACGTCAGACTGCAGA+AGG + chr7_3:57194328-57194347 None:intergenic 55.0%
GCTAGGCTCACCAAGCTTAG+TGG - chr7_3:57194513-57194532 Msa1111490:intron 55.0%
TGTAATCCCTCCACTGCCAG+AGG - chr7_3:57194554-57194573 Msa1111490:five_prime_UTR 55.0%
CGAATACCTCTGGCAGTGGA+GGG + chr7_3:57194563-57194582 None:intergenic 55.0%
ACGAATACCTCTGGCAGTGG+AGG + chr7_3:57194564-57194583 None:intergenic 55.0%
GAGTTTCGGCCATGGGACTA+AGG + chr7_3:57194651-57194670 None:intergenic 55.0%
CAAGCTGAGAGTTTCGGCCA+TGG + chr7_3:57194659-57194678 None:intergenic 55.0%
CATGGCCGAAACTCTCAGCT+TGG - chr7_3:57194657-57194676 Msa1111490:five_prime_UTR 55.0%
CCGCTCCAAGCTGAGAGTTT+CGG + chr7_3:57194665-57194684 None:intergenic 55.0%
CCGAAACTCTCAGCTTGGAG+CGG - chr7_3:57194662-57194681 Msa1111490:five_prime_UTR 55.0%
CGAAACTCTCAGCTTGGAGC+GGG - chr7_3:57194663-57194682 Msa1111490:five_prime_UTR 55.0%
CGGGCAAGCCAACTTATTGC+AGG - chr7_3:57194682-57194701 Msa1111490:five_prime_UTR 55.0%
!! TTGTTGGGTTGGGCTGGGCT+GGG + chr7_3:57194714-57194733 None:intergenic 60.0%
!! GAGAGGGCACTGCGTGAGGT+TGG + chr7_3:57194599-57194618 None:intergenic 65.0%
!! AGACGAGAGGGCACTGCGTG+AGG + chr7_3:57194603-57194622 None:intergenic 65.0%
CACGCAGTGCCCTCTCGTCT+AGG - chr7_3:57194603-57194622 Msa1111490:five_prime_UTR 65.0%
!! CTTGTTGGGTTGGGCTGGGC+TGG + chr7_3:57194715-57194734 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57190509 57194757 57190509 ID=Msa1111490;Name=Msa1111490
chr7_3 mRNA 57190509 57194757 57190509 ID=Msa1111490-mRNA-1;Parent=Msa1111490;Name=Msa1111490-mRNA-1;_AED=0.55;_eAED=0.55;_QI=228|0.33|0.5|0.5|0.66|0.5|4|0|145
chr7_3 exon 57190509 57190717 57190509 ID=Msa1111490-mRNA-1:exon:12312;Parent=Msa1111490-mRNA-1
chr7_3 exon 57190885 57190931 57190885 ID=Msa1111490-mRNA-1:exon:12311;Parent=Msa1111490-mRNA-1
chr7_3 exon 57193998 57194197 57193998 ID=Msa1111490-mRNA-1:exon:12310;Parent=Msa1111490-mRNA-1
chr7_3 exon 57194548 57194757 57194548 ID=Msa1111490-mRNA-1:exon:12309;Parent=Msa1111490-mRNA-1
chr7_3 five_prime_UTR 57194548 57194757 57194548 ID=Msa1111490-mRNA-1:five_prime_utr;Parent=Msa1111490-mRNA-1
chr7_3 five_prime_UTR 57194180 57194197 57194180 ID=Msa1111490-mRNA-1:five_prime_utr;Parent=Msa1111490-mRNA-1
chr7_3 CDS 57193998 57194179 57193998 ID=Msa1111490-mRNA-1:cds;Parent=Msa1111490-mRNA-1
chr7_3 CDS 57190885 57190931 57190885 ID=Msa1111490-mRNA-1:cds;Parent=Msa1111490-mRNA-1
chr7_3 CDS 57190509 57190717 57190509 ID=Msa1111490-mRNA-1:cds;Parent=Msa1111490-mRNA-1
Gene Sequence

>Msa1111490

ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAATGCTACAAGCAGACAAGTGACATTCTCAAAAAGAAGAAATGGTTTGCTGAAGAAAGCATTTGAGCTATCTGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTTTCTCCAAGAGGAAAACTTTATGAATTTTCAAGCTCCTGTCTGACGTGTGCTCTCAAGTTTTGCGGCAAACCTTTTGTCTTTATTATGGCTTGTAATCCCTCCACTGCCAGAGGTATTCGTTGTTCTGTGAAACCAACCTCACGCAGTGCCCTCTCGTCTAGGAGTCAAGAGACCCAAGATTTCGCCTTAGTCCCATGGCCGAAACTCTCAGCTTGGAGCGGGCAAGCCAACTTATTGCAGGAAGCAGCCCAGCCCAGCCCAACCCAACAAGTCATAGCCATGTTATCACTTTGA
Protein sequence

>Msa1111490

MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSCLTCALKFCGKPFVFIMACNPSTARGIRCSVKPTSRSALSSRSQETQDFALVPWPKLSAWSGQANLLQEAAQPSPTQQVIAMLSL*