Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116060 | XP_024627116.1 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.27e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116060 | sp|O48528|OP163_ARATH | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.08e-70 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116060 | A2Q4T7 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 6.08e-108 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0687630 | Msa1116060 | 0.809948 | 1.470100e-50 | -8.615850e-47 |
| Msa1116060 | Msa1162480 | 0.999052 | 8.127640e-288 | -8.615850e-47 |
| Msa1116060 | Msa1404190 | 0.801799 | 7.591769e-49 | -8.615850e-47 |
| Msa0966270 | Msa1116060 | 0.813925 | 1.999378e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116060 | MtrunA17_Chr7g0258441 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.17e-111 | 313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116060 | AT2G42210.2 | 67.532 | 154 | 50 | 0 | 1 | 154 | 15 | 168 | 7.85e-71 | 211 |
| Msa1116060 | AT2G42210.1 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
| Msa1116060 | AT2G42210.3 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
| Msa1116060 | AT2G42210.4 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
| Msa1116060 | AT2G42210.5 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
Find 67 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATCATCGTACATTTAT+TGG | 0.126510 | 7_3:+63595838 | None:intergenic |
| GTTTAGTTGCTGGCACTATC+TGG | 0.151026 | 7_3:-63598080 | Msa1116060:CDS |
| TTCCCTTCATCATGTTTAAA+AGG | 0.206706 | 7_3:+63596061 | None:intergenic |
| TATGATATCTGAAGTCTTAA+AGG | 0.215200 | 7_3:-63595663 | Msa1116060:three_prime_UTR |
| CGAGAGAAGTGTTGCTCTTC+CGG | 0.237509 | 7_3:-63598019 | Msa1116060:CDS |
| TGTACGATGATGTGTTAATT+TGG | 0.268176 | 7_3:-63595830 | Msa1116060:three_prime_UTR |
| CAATGAACTTGAAATGTCTT+TGG | 0.277207 | 7_3:+63595965 | None:intergenic |
| CAAAGACATTTCAAGTTCAT+TGG | 0.286400 | 7_3:-63595964 | Msa1116060:three_prime_UTR |
| ACAGCTTACAAAAGAAAATA+TGG | 0.309843 | 7_3:+63595882 | None:intergenic |
| TGAAATGTCTTTGGTCATAA+AGG | 0.311002 | 7_3:+63595974 | None:intergenic |
| GAGAGAAGTGTTGCTCTTCC+GGG | 0.333701 | 7_3:-63598018 | Msa1116060:CDS |
| GTTGCTGGTGCAACTATTCT+TGG | 0.345412 | 7_3:-63597856 | Msa1116060:CDS |
| GCTGTTGGTGGATTTGTTGC+TGG | 0.348409 | 7_3:-63597871 | Msa1116060:CDS |
| TGTGGAGGCCGCTCAGAGTT+TGG | 0.362168 | 7_3:-63598844 | Msa1116060:five_prime_UTR |
| GCAACAACTGGTTTAGTTGC+TGG | 0.371072 | 7_3:-63598090 | Msa1116060:CDS |
| TTTAGTTGCTGGCACTATCT+GGG | 0.403267 | 7_3:-63598079 | Msa1116060:CDS |
| ATGAAGAGGGATCTTGTAAA+TGG | 0.414469 | 7_3:-63597895 | Msa1116060:CDS |
| TTGGTTTGCAGAGATTATAA+TGG | 0.415470 | 7_3:-63598175 | Msa1116060:intron |
| AGTCTACATAGGGGTGGAAC+AGG | 0.418652 | 7_3:-63597935 | Msa1116060:CDS |
| GTAGTATTATGTAAAGGTTA+TGG | 0.453349 | 7_3:+63595797 | None:intergenic |
| ATTCCAACTCAACAAACAAC+TGG | 0.454172 | 7_3:+63595916 | None:intergenic |
| TGTGAAAGCCAATGCTGATC+CGG | 0.457987 | 7_3:+63596111 | None:intergenic |
| GAAGCTGGCGCAGTAGAACT+AGG | 0.462544 | 7_3:-63595730 | Msa1116060:three_prime_UTR |
| CTTGTAAATGGTGCTGTTGG+TGG | 0.465052 | 7_3:-63597883 | Msa1116060:CDS |
| GAGCCAGTTGTTTGTTGAGT+TGG | 0.465517 | 7_3:-63595919 | Msa1116060:three_prime_UTR |
| ATCTCAACTGCAATTTCTGC+CGG | 0.488258 | 7_3:-63596130 | Msa1116060:CDS |
| GATTAGAACTTTGAAGATGA+TGG | 0.494059 | 7_3:-63597992 | Msa1116060:CDS |
| AATTTCTGCCGGATCAGCAT+TGG | 0.497080 | 7_3:-63596119 | Msa1116060:CDS |
| GACTCCTCCTATGGCGGCAA+AGG | 0.503480 | 7_3:+63597954 | None:intergenic |
| TTTGTAAGCAAGAGTAGTAT+CGG | 0.505455 | 7_3:-63598890 | Msa1116060:five_prime_UTR |
| TACTAGTCAACATTCTTCCA+TGG | 0.506310 | 7_3:-63595777 | Msa1116060:three_prime_UTR |
| AACAGGTGGTGCAGAACTAC+AGG | 0.509492 | 7_3:-63597918 | Msa1116060:CDS |
| TTGAAGATGATGGGTGGCTA+TGG | 0.511278 | 7_3:-63597982 | Msa1116060:CDS |
| TTCATCATGTTTAAAAGGCG+TGG | 0.528434 | 7_3:+63596066 | None:intergenic |
| GGAGCGACCTTTGCCGCCAT+AGG | 0.530743 | 7_3:-63597961 | Msa1116060:CDS |
| ATGAATACTATACATGAAGC+TGG | 0.538495 | 7_3:-63595745 | Msa1116060:three_prime_UTR |
| ACGTAGGTACTTCGAGGATG+AGG | 0.541797 | 7_3:-63598142 | Msa1116060:CDS |
| TGACTAGTAGTATTATGTAA+AGG | 0.543217 | 7_3:+63595791 | None:intergenic |
| GCGACCTTTGCCGCCATAGG+AGG | 0.543885 | 7_3:-63597958 | Msa1116060:CDS |
| TTAGTTGCTGGCACTATCTG+GGG | 0.550686 | 7_3:-63598078 | Msa1116060:CDS |
| CCATAGGAGGAGTCTACATA+GGG | 0.550718 | 7_3:-63597945 | Msa1116060:CDS |
| CCCTATGTAGACTCCTCCTA+TGG | 0.554940 | 7_3:+63597945 | None:intergenic |
| GGGGTACTGTAGTTGCCACC+TGG | 0.555518 | 7_3:-63598059 | Msa1116060:CDS |
| TTTGTTGAGTTGGAATTACA+TGG | 0.555647 | 7_3:-63595909 | Msa1116060:three_prime_UTR |
| GATCTTGTAAATGGTGCTGT+TGG | 0.564385 | 7_3:-63597886 | Msa1116060:CDS |
| ATTAGAACTTTGAAGATGAT+GGG | 0.565356 | 7_3:-63597991 | Msa1116060:CDS |
| TTCAAAGTTCTAATCAGCCC+CGG | 0.577416 | 7_3:+63598000 | None:intergenic |
| AGCAGAACGTAGGTACTTCG+AGG | 0.590571 | 7_3:-63598148 | Msa1116060:CDS |
| AGAGAAGTGTTGCTCTTCCG+GGG | 0.596304 | 7_3:-63598017 | Msa1116060:CDS |
| ACTAGTCAACATTCTTCCAT+GGG | 0.596601 | 7_3:-63595776 | Msa1116060:three_prime_UTR |
| GTATTCATCAATTCATCCCA+TGG | 0.596875 | 7_3:+63595760 | None:intergenic |
| CAGAAGAATTCTGCGAAGTG+TGG | 0.606590 | 7_3:-63598862 | Msa1116060:five_prime_UTR |
| TGCAGAACTACAGGATGAAG+AGG | 0.608336 | 7_3:-63597909 | Msa1116060:CDS |
| AAGCTGGCGCAGTAGAACTA+GGG | 0.611063 | 7_3:-63595729 | Msa1116060:three_prime_UTR |
| AAGAATTCTGCGAAGTGTGG+AGG | 0.620146 | 7_3:-63598859 | Msa1116060:five_prime_UTR |
| CTACATAGGGGTGGAACAGG+TGG | 0.622608 | 7_3:-63597932 | Msa1116060:CDS |
| GCAACTATTCTTGGTTACAG+AGG | 0.629555 | 7_3:-63597847 | Msa1116060:intron |
| AGGAGGAGTCTACATAGGGG+TGG | 0.649086 | 7_3:-63597941 | Msa1116060:CDS |
| GCAACACTTCTCTCGACACG+AGG | 0.650416 | 7_3:+63598027 | None:intergenic |
| GACACGAGGAACATCATACC+AGG | 0.658932 | 7_3:+63598041 | None:intergenic |
| TATGTAGACTCCTCCTATGG+CGG | 0.661958 | 7_3:+63597948 | None:intergenic |
| GCAGAACTACAGGATGAAGA+GGG | 0.663987 | 7_3:-63597908 | Msa1116060:CDS |
| AGAACTTTGAAGATGATGGG+TGG | 0.665092 | 7_3:-63597988 | Msa1116060:CDS |
| CTACAACTCCAAACTCTGAG+CGG | 0.696181 | 7_3:+63598836 | None:intergenic |
| TAATGGACTCAGCAGAACGT+AGG | 0.713597 | 7_3:-63598158 | Msa1116060:CDS |
| ACGAGGAACATCATACCAGG+TGG | 0.746444 | 7_3:+63598044 | None:intergenic |
| CATAGGAGGAGTCTACATAG+GGG | 0.784446 | 7_3:-63597944 | Msa1116060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAAAATCTTCATATTT+GGG | - | chr7_3:63596060-63596079 | Msa1116060:CDS | 15.0% |
| !!! | TAATTTCATAGTATTTGTTA+CGG | + | chr7_3:63597165-63597184 | None:intergenic | 15.0% |
| !!! | CAAAAGTATATTTTATAGTT+GGG | + | chr7_3:63597579-63597598 | None:intergenic | 15.0% |
| !! | ATAAAATGAAAACCCTAAAA+AGG | + | chr7_3:63595838-63595857 | None:intergenic | 20.0% |
| !! | AAAATGTGGTATAGTTAAAA+GGG | + | chr7_3:63595864-63595883 | None:intergenic | 20.0% |
| !! | AAAAATGTGGTATAGTTAAA+AGG | + | chr7_3:63595865-63595884 | None:intergenic | 20.0% |
| !! | CAAAAATCCAAAAATCTTAA+AGG | + | chr7_3:63596018-63596037 | None:intergenic | 20.0% |
| !!! | CTTTAAGATTTTTGGATTTT+TGG | - | chr7_3:63596016-63596035 | Msa1116060:CDS | 20.0% |
| !! | CATATCAAAATCTTCATATT+TGG | - | chr7_3:63596059-63596078 | Msa1116060:CDS | 20.0% |
| !! | AATTCTCTGATAATTATATG+AGG | + | chr7_3:63596761-63596780 | None:intergenic | 20.0% |
| !! | AGTTAACTAGTTAGATAATT+AGG | - | chr7_3:63597069-63597088 | Msa1116060:intron | 20.0% |
| !! | TAATTCCTAAGGTAAAAAAT+GGG | - | chr7_3:63597439-63597458 | Msa1116060:intron | 20.0% |
| !!! | CCAAAAGTATATTTTATAGT+TGG | + | chr7_3:63597580-63597599 | None:intergenic | 20.0% |
| !!! | CCAACTATAAAATATACTTT+TGG | - | chr7_3:63597577-63597596 | Msa1116060:intron | 20.0% |
| !! | ATTGTCAAAATAAAAAAGTC+AGG | + | chr7_3:63598123-63598142 | None:intergenic | 20.0% |
| !! | TTTCTTCAGTTATTTGTTTA+AGG | - | chr7_3:63598330-63598349 | Msa1116060:intron | 20.0% |
| !! | AAAAATTATGCATTGTTACT+GGG | + | chr7_3:63598569-63598588 | None:intergenic | 20.0% |
| !! | TAAAAATTATGCATTGTTAC+TGG | + | chr7_3:63598570-63598589 | None:intergenic | 20.0% |
| !! | TTTCTCTATTCACCTTTTTA+GGG | - | chr7_3:63595823-63595842 | Msa1116060:three_prime_UTR | 25.0% |
| ! | AAATGTGGTATAGTTAAAAG+GGG | + | chr7_3:63595863-63595882 | None:intergenic | 25.0% |
| ! | AAGAAGATTGTTGAAAAATG+TGG | + | chr7_3:63595878-63595897 | None:intergenic | 25.0% |
| ! | TTGAACAATGAAATTGATAG+TGG | + | chr7_3:63595969-63595988 | None:intergenic | 25.0% |
| ! | AAATCCAAAAATCTTAAAGG+TGG | + | chr7_3:63596015-63596034 | None:intergenic | 25.0% |
| !!! | TGGATTTTTGGATTTCAATT+TGG | - | chr7_3:63596028-63596047 | Msa1116060:CDS | 25.0% |
| ! | ACGATAATGTTACAAAACAA+TGG | + | chr7_3:63596300-63596319 | None:intergenic | 25.0% |
| ! | ACATGAGTAATTAGTAAAAG+TGG | - | chr7_3:63596323-63596342 | Msa1116060:intron | 25.0% |
| !! | ATCACTCACAAAAACTTTTA+AGG | - | chr7_3:63596458-63596477 | Msa1116060:intron | 25.0% |
| !! | TCACTCACAAAAACTTTTAA+GGG | - | chr7_3:63596459-63596478 | Msa1116060:intron | 25.0% |
| !! | ATTAGAACTTTGAAGATGAT+GGG | - | chr7_3:63596582-63596601 | Msa1116060:intron | 25.0% |
| ! | CTGATAATTATATGAGGAAA+GGG | + | chr7_3:63596755-63596774 | None:intergenic | 25.0% |
| ! | TCTGATAATTATATGAGGAA+AGG | + | chr7_3:63596756-63596775 | None:intergenic | 25.0% |
| ! | TCCATAATATAATTCAGAAG+TGG | - | chr7_3:63596889-63596908 | Msa1116060:intron | 25.0% |
| ! | ACCACTTCTGAATTATATTA+TGG | + | chr7_3:63596893-63596912 | None:intergenic | 25.0% |
| ! | TCAAAAGGAAGAAAAAACAA+TGG | + | chr7_3:63596949-63596968 | None:intergenic | 25.0% |
| ! | AATGAGTTAATCATGTCAAA+AGG | + | chr7_3:63596964-63596983 | None:intergenic | 25.0% |
| ! | TTAAAGTAACACTTGTATGA+CGG | - | chr7_3:63597017-63597036 | Msa1116060:intron | 25.0% |
| ! | GTAATTCCTAAGGTAAAAAA+TGG | - | chr7_3:63597438-63597457 | Msa1116060:intron | 25.0% |
| !!! | TTTAACCCATTTTTTACCTT+AGG | + | chr7_3:63597447-63597466 | None:intergenic | 25.0% |
| !!! | TAAAAAATGGGTTAAAAGAC+TGG | - | chr7_3:63597451-63597470 | Msa1116060:intron | 25.0% |
| ! | AAATGGTATATGTACAGAAA+CGG | - | chr7_3:63597657-63597676 | Msa1116060:intron | 25.0% |
| ! | CAATAGTTAGAAATTCTTGA+CGG | + | chr7_3:63597775-63597794 | None:intergenic | 25.0% |
| ! | AAGAATTTCTAACTATTGCA+TGG | - | chr7_3:63597777-63597796 | Msa1116060:intron | 25.0% |
| ! | AGAATTTCTAACTATTGCAT+GGG | - | chr7_3:63597778-63597797 | Msa1116060:intron | 25.0% |
| ! | AAGTTCGAAAAATATTGGAA+GGG | + | chr7_3:63597830-63597849 | None:intergenic | 25.0% |
| ! | GTTAGAAGTTCGAAAAATAT+TGG | + | chr7_3:63597835-63597854 | None:intergenic | 25.0% |
| ! | CAATAAAGAGAAAGAAATGA+AGG | + | chr7_3:63597876-63597895 | None:intergenic | 25.0% |
| !! | TAGTTCTATTGATATATTCC+CGG | - | chr7_3:63597905-63597924 | Msa1116060:CDS | 25.0% |
| ! | CTACTAAGGTAATTATAGAA+TGG | + | chr7_3:63597935-63597954 | None:intergenic | 25.0% |
| ! | TAACACACAAGAAACATTTA+GGG | + | chr7_3:63598272-63598291 | None:intergenic | 25.0% |
| ! | TTAACACACAAGAAACATTT+AGG | + | chr7_3:63598273-63598292 | None:intergenic | 25.0% |
| ! | ACAGCTTACAAAAGAAAATA+TGG | + | chr7_3:63598694-63598713 | None:intergenic | 25.0% |
| ! | GTAGTATTATGTAAAGGTTA+TGG | + | chr7_3:63598779-63598798 | None:intergenic | 25.0% |
| ! | TGACTAGTAGTATTATGTAA+AGG | + | chr7_3:63598785-63598804 | None:intergenic | 25.0% |
| !! | TATGATATCTGAAGTCTTAA+AGG | - | chr7_3:63598910-63598929 | Msa1116060:five_prime_UTR | 25.0% |
| TTTGTAAGCAAGAGTAGTAT+CGG | - | chr7_3:63595683-63595702 | Msa1116060:three_prime_UTR | 30.0% | |
| ! | CTTTTCGATTTCTCTTTTTC+AGG | - | chr7_3:63595760-63595779 | Msa1116060:three_prime_UTR | 30.0% |
| ! | GTTTCTCTATTCACCTTTTT+AGG | - | chr7_3:63595822-63595841 | Msa1116060:three_prime_UTR | 30.0% |
| AATGTGGTATAGTTAAAAGG+GGG | + | chr7_3:63595862-63595881 | None:intergenic | 30.0% | |
| ACATAAGCCGAATTGTAAAA+CGG | + | chr7_3:63595934-63595953 | None:intergenic | 30.0% | |
| !!! | ATTCGGCTTATGTTATTTTC+TGG | - | chr7_3:63595941-63595960 | Msa1116060:three_prime_UTR | 30.0% |
| !!! | TTCTCCACCTTTAAGATTTT+TGG | - | chr7_3:63596008-63596027 | Msa1116060:exon | 30.0% |
| CAATAAGGTGCAACAAATTA+AGG | + | chr7_3:63596093-63596112 | None:intergenic | 30.0% | |
| ACATAAGTGCTTATGCAATA+AGG | + | chr7_3:63596108-63596127 | None:intergenic | 30.0% | |
| TACAAAACAATGGACATGTT+TGG | + | chr7_3:63596290-63596309 | None:intergenic | 30.0% | |
| ! | TTTAAGCCTTCTATTCCTTT+TGG | - | chr7_3:63596365-63596384 | Msa1116060:intron | 30.0% |
| ! | TTAAGCCTTCTATTCCTTTT+GGG | - | chr7_3:63596366-63596385 | Msa1116060:intron | 30.0% |
| AAATTCCCAAAAGGAATAGA+AGG | + | chr7_3:63596374-63596393 | None:intergenic | 30.0% | |
| !! | TCCTTTTGGGAATTTTTTGT+TGG | - | chr7_3:63596379-63596398 | Msa1116060:intron | 30.0% |
| ACCAACAAAAAATTCCCAAA+AGG | + | chr7_3:63596383-63596402 | None:intergenic | 30.0% | |
| !! | TTGGTTTGCAGAGATTATAA+TGG | - | chr7_3:63596398-63596417 | Msa1116060:intron | 30.0% |
| ! | GATTAGAACTTTGAAGATGA+TGG | - | chr7_3:63596581-63596600 | Msa1116060:intron | 30.0% |
| TAGTAGATAAGCATCATATG+AGG | - | chr7_3:63596912-63596931 | Msa1116060:intron | 30.0% | |
| CTAGTTAACTACCTAATAAC+AGG | + | chr7_3:63597059-63597078 | None:intergenic | 30.0% | |
| ACTTATGATTACGAAATGTC+AGG | + | chr7_3:63597216-63597235 | None:intergenic | 30.0% | |
| TAATTGAGTAATTGTGAGTC+AGG | + | chr7_3:63597241-63597260 | None:intergenic | 30.0% | |
| ATGAGAATGAGTAATTCCTA+AGG | - | chr7_3:63597428-63597447 | Msa1116060:intron | 30.0% | |
| AAGATTGCAAGTTAGATTGT+AGG | + | chr7_3:63597544-63597563 | None:intergenic | 30.0% | |
| !! | TATACTTTTGGTGTACTGAT+TGG | - | chr7_3:63597589-63597608 | Msa1116060:intron | 30.0% |
| TTCTCTTCTAGACATAGATT+GGG | + | chr7_3:63597632-63597651 | None:intergenic | 30.0% | |
| TTTCTCTTCTAGACATAGAT+TGG | + | chr7_3:63597633-63597652 | None:intergenic | 30.0% | |
| TCTAGAAGAGAAAGAAGAAA+TGG | - | chr7_3:63597640-63597659 | Msa1116060:intron | 30.0% | |
| AATGGTATATGTACAGAAAC+GGG | - | chr7_3:63597658-63597677 | Msa1116060:intron | 30.0% | |
| GAAGTTCGAAAAATATTGGA+AGG | + | chr7_3:63597831-63597850 | None:intergenic | 30.0% | |
| AGTTCTATTGATATATTCCC+GGG | - | chr7_3:63597906-63597925 | Msa1116060:CDS | 30.0% | |
| TAATTATAGAATGGTTTCCC+GGG | + | chr7_3:63597926-63597945 | None:intergenic | 30.0% | |
| GTAATTATAGAATGGTTTCC+CGG | + | chr7_3:63597927-63597946 | None:intergenic | 30.0% | |
| ! | TGTGTGTGTTTCTATGTATT+GGG | - | chr7_3:63597994-63598013 | Msa1116060:CDS | 30.0% |
| AAGACTTCACAAAATGAATG+CGG | + | chr7_3:63598042-63598061 | None:intergenic | 30.0% | |
| ! | TAGAAGGCTTGTAGATTTTA+TGG | - | chr7_3:63598094-63598113 | Msa1116060:CDS | 30.0% |
| ! | TTGTGCTCTTTTATTATCAG+TGG | - | chr7_3:63598143-63598162 | Msa1116060:CDS | 30.0% |
| TATGAGTTATGTGATTTCAG+TGG | - | chr7_3:63598172-63598191 | Msa1116060:intron | 30.0% | |
| ! | ATACATGGACTAAAGTACAA+TGG | + | chr7_3:63598234-63598253 | None:intergenic | 30.0% |
| TACTTTAGTCCATGTATTCA+AGG | - | chr7_3:63598237-63598256 | Msa1116060:intron | 30.0% | |
| AACACACAAGAAACATTTAG+GGG | + | chr7_3:63598271-63598290 | None:intergenic | 30.0% | |
| TTTGTTTAAGGAGCTCTATA+TGG | - | chr7_3:63598342-63598361 | Msa1116060:intron | 30.0% | |
| TAACAAGCTTTGCATAATGT+CGG | - | chr7_3:63598401-63598420 | Msa1116060:intron | 30.0% | |
| TTCCCTTCATCATGTTTAAA+AGG | + | chr7_3:63598515-63598534 | None:intergenic | 30.0% | |
| ! | TTTTAAACATGATGAAGGGA+AGG | - | chr7_3:63598514-63598533 | Msa1116060:intron | 30.0% |
| TGAAATGTCTTTGGTCATAA+AGG | + | chr7_3:63598602-63598621 | None:intergenic | 30.0% | |
| CAATGAACTTGAAATGTCTT+TGG | + | chr7_3:63598611-63598630 | None:intergenic | 30.0% | |
| !! | CAAAGACATTTCAAGTTCAT+TGG | - | chr7_3:63598609-63598628 | Msa1116060:intron | 30.0% |
| !! | TTTGTTGAGTTGGAATTACA+TGG | - | chr7_3:63598664-63598683 | Msa1116060:intron | 30.0% |
| ACACATCATCGTACATTTAT+TGG | + | chr7_3:63598738-63598757 | None:intergenic | 30.0% | |
| TGTACGATGATGTGTTAATT+TGG | - | chr7_3:63598743-63598762 | Msa1116060:intron | 30.0% | |
| ATGAATACTATACATGAAGC+TGG | - | chr7_3:63598828-63598847 | Msa1116060:five_prime_UTR | 30.0% | |
| ! | CTATGCTCCGTTTTACAATT+CGG | - | chr7_3:63595924-63595943 | Msa1116060:three_prime_UTR | 35.0% |
| AAGCACTATTGTGTCTGTTT+AGG | + | chr7_3:63596237-63596256 | None:intergenic | 35.0% | |
| GAATAGAAGGCTTAAACACT+CGG | + | chr7_3:63596361-63596380 | None:intergenic | 35.0% | |
| ATGAAGAGGGATCTTGTAAA+TGG | - | chr7_3:63596678-63596697 | Msa1116060:intron | 35.0% | |
| AGATAAGCATCATATGAGGA+AGG | - | chr7_3:63596916-63596935 | Msa1116060:intron | 35.0% | |
| TCATTGTGCTAAATTGCTAC+TGG | - | chr7_3:63596979-63596998 | Msa1116060:intron | 35.0% | |
| AAGTAGGATCTTGACAACTT+TGG | + | chr7_3:63597103-63597122 | None:intergenic | 35.0% | |
| AAGTTGTCAAGATCCTACTT+AGG | - | chr7_3:63597103-63597122 | Msa1116060:intron | 35.0% | |
| CACAATTACTCAATTAGCAC+TGG | - | chr7_3:63597245-63597264 | Msa1116060:intron | 35.0% | |
| TTTATGATCTTACGACCACT+GGG | + | chr7_3:63597511-63597530 | None:intergenic | 35.0% | |
| ! | TTTTATGATCTTACGACCAC+TGG | + | chr7_3:63597512-63597531 | None:intergenic | 35.0% |
| ATATGTACAGAAACGGGAAT+AGG | - | chr7_3:63597664-63597683 | Msa1116060:intron | 35.0% | |
| ! | TAGTGGATAGTTGTGTTAGA+CGG | - | chr7_3:63597695-63597714 | Msa1116060:intron | 35.0% |
| CGCTGTAACATGATTATGAA+GGG | - | chr7_3:63597744-63597763 | Msa1116060:intron | 35.0% | |
| TTACCTTAGTAGTGCATCTT+TGG | - | chr7_3:63597943-63597962 | Msa1116060:CDS | 35.0% | |
| AGCAAGAAATTATCACCTTG+TGG | - | chr7_3:63597968-63597987 | Msa1116060:CDS | 35.0% | |
| ! | GTGTGTGTGTTTCTATGTAT+TGG | - | chr7_3:63597993-63598012 | Msa1116060:CDS | 35.0% |
| ! | GTGAAGTCTTATGTCGTTTA+AGG | - | chr7_3:63598052-63598071 | Msa1116060:CDS | 35.0% |
| TCATAGAACCTCAACATAGA+AGG | - | chr7_3:63598078-63598097 | Msa1116060:CDS | 35.0% | |
| TTTGTAGCAACTAGCAAGAA+AGG | + | chr7_3:63598205-63598224 | None:intergenic | 35.0% | |
| ACAAGAAACATTTAGGGGTT+AGG | + | chr7_3:63598266-63598285 | None:intergenic | 35.0% | |
| ! | CATAATGTCGGTTATACTGT+AGG | - | chr7_3:63598413-63598432 | Msa1116060:intron | 35.0% |
| !!! | ATCTGCAGTCATTGATTTTG+CGG | - | chr7_3:63598484-63598503 | Msa1116060:intron | 35.0% |
| TTCATCATGTTTAAAAGGCG+TGG | + | chr7_3:63598510-63598529 | None:intergenic | 35.0% | |
| ! | ACGCCTTTTAAACATGATGA+AGG | - | chr7_3:63598509-63598528 | Msa1116060:intron | 35.0% |
| ! | CGCCTTTTAAACATGATGAA+GGG | - | chr7_3:63598510-63598529 | Msa1116060:intron | 35.0% |
| ATTCCAACTCAACAAACAAC+TGG | + | chr7_3:63598660-63598679 | None:intergenic | 35.0% | |
| TACTAGTCAACATTCTTCCA+TGG | - | chr7_3:63598796-63598815 | Msa1116060:intron | 35.0% | |
| ACTAGTCAACATTCTTCCAT+GGG | - | chr7_3:63598797-63598816 | Msa1116060:intron | 35.0% | |
| GTATTCATCAATTCATCCCA+TGG | + | chr7_3:63598816-63598835 | None:intergenic | 35.0% | |
| TCTTAAAGGTGGAGAAACTG+TGG | + | chr7_3:63596004-63596023 | None:intergenic | 40.0% | |
| !! | ACTTTTAAGGGTGCAACAAC+TGG | - | chr7_3:63596471-63596490 | Msa1116060:intron | 40.0% |
| TTTAGTTGCTGGCACTATCT+GGG | - | chr7_3:63596494-63596513 | Msa1116060:intron | 40.0% | |
| ! | TTCAAAGTTCTAATCAGCCC+CGG | + | chr7_3:63596576-63596595 | None:intergenic | 40.0% |
| !! | AGAACTTTGAAGATGATGGG+TGG | - | chr7_3:63596585-63596604 | Msa1116060:intron | 40.0% |
| !! | GATCTTGTAAATGGTGCTGT+TGG | - | chr7_3:63596687-63596706 | Msa1116060:intron | 40.0% |
| GCAACTATTCTTGGTTACAG+AGG | - | chr7_3:63596726-63596745 | Msa1116060:intron | 40.0% | |
| GGAGTATGTCACCTGTTATT+AGG | - | chr7_3:63597045-63597064 | Msa1116060:intron | 40.0% | |
| TTGTGCATTCTCAAAGCTTC+TGG | + | chr7_3:63597312-63597331 | None:intergenic | 40.0% | |
| TTGAGAATGCACAAGTAGAG+AGG | - | chr7_3:63597318-63597337 | Msa1116060:intron | 40.0% | |
| AGGAAGAGAAGTAATTGCTG+AGG | - | chr7_3:63597364-63597383 | Msa1116060:intron | 40.0% | |
| GGAAGAGAAGTAATTGCTGA+GGG | - | chr7_3:63597365-63597384 | Msa1116060:intron | 40.0% | |
| GAAGAGAAGTAATTGCTGAG+GGG | - | chr7_3:63597366-63597385 | Msa1116060:intron | 40.0% | |
| AAGAGAAGTAATTGCTGAGG+GGG | - | chr7_3:63597367-63597386 | Msa1116060:intron | 40.0% | |
| GCGCTGTAACATGATTATGA+AGG | - | chr7_3:63597743-63597762 | Msa1116060:intron | 40.0% | |
| TCTAACTATTGCATGGGAAC+AGG | - | chr7_3:63597784-63597803 | Msa1116060:intron | 40.0% | |
| TAGCCAAAGATGCACTACTA+AGG | + | chr7_3:63597949-63597968 | None:intergenic | 40.0% | |
| ! | GTGTGTTTCTATGTATTGGG+AGG | - | chr7_3:63597997-63598016 | Msa1116060:CDS | 40.0% |
| ! | TGTTTCTATGTATTGGGAGG+AGG | - | chr7_3:63598000-63598019 | Msa1116060:CDS | 40.0% |
| CTTCACAAAATGAATGCGGA+TGG | + | chr7_3:63598038-63598057 | None:intergenic | 40.0% | |
| TCTACAAGCCTTCTATGTTG+AGG | + | chr7_3:63598089-63598108 | None:intergenic | 40.0% | |
| GTTAGGCATCCTTGAATACA+TGG | + | chr7_3:63598249-63598268 | None:intergenic | 40.0% | |
| ! | ATGTCGGTTATACTGTAGGA+AGG | - | chr7_3:63598417-63598436 | Msa1116060:intron | 40.0% |
| ATCTCAACTGCAATTTCTGC+CGG | - | chr7_3:63598443-63598462 | Msa1116060:intron | 40.0% | |
| CAGAAGAATTCTGCGAAGTG+TGG | - | chr7_3:63595711-63595730 | Msa1116060:three_prime_UTR | 45.0% | |
| AAGAATTCTGCGAAGTGTGG+AGG | - | chr7_3:63595714-63595733 | Msa1116060:three_prime_UTR | 45.0% | |
| CTACAACTCCAAACTCTGAG+CGG | + | chr7_3:63595740-63595759 | None:intergenic | 45.0% | |
| AGGTGGAGAAACTGTGGTAT+TGG | + | chr7_3:63595998-63596017 | None:intergenic | 45.0% | |
| !! | TAATGGACTCAGCAGAACGT+AGG | - | chr7_3:63596415-63596434 | Msa1116060:intron | 45.0% |
| ! | GCAACAACTGGTTTAGTTGC+TGG | - | chr7_3:63596483-63596502 | Msa1116060:intron | 45.0% |
| GTTTAGTTGCTGGCACTATC+TGG | - | chr7_3:63596493-63596512 | Msa1116060:intron | 45.0% | |
| TTAGTTGCTGGCACTATCTG+GGG | - | chr7_3:63596495-63596514 | Msa1116060:intron | 45.0% | |
| !! | TTGAAGATGATGGGTGGCTA+TGG | - | chr7_3:63596591-63596610 | Msa1116060:intron | 45.0% |
| TATGTAGACTCCTCCTATGG+CGG | + | chr7_3:63596628-63596647 | None:intergenic | 45.0% | |
| CCATAGGAGGAGTCTACATA+GGG | - | chr7_3:63596628-63596647 | Msa1116060:intron | 45.0% | |
| CATAGGAGGAGTCTACATAG+GGG | - | chr7_3:63596629-63596648 | Msa1116060:intron | 45.0% | |
| TGCAGAACTACAGGATGAAG+AGG | - | chr7_3:63596664-63596683 | Msa1116060:intron | 45.0% | |
| GCAGAACTACAGGATGAAGA+GGG | - | chr7_3:63596665-63596684 | Msa1116060:intron | 45.0% | |
| !! | CTTGTAAATGGTGCTGTTGG+TGG | - | chr7_3:63596690-63596709 | Msa1116060:intron | 45.0% |
| GTTGCTGGTGCAACTATTCT+TGG | - | chr7_3:63596717-63596736 | Msa1116060:intron | 45.0% | |
| AACACTTGTATGACGGTTGC+TGG | - | chr7_3:63597024-63597043 | Msa1116060:intron | 45.0% | |
| GGATCTTGACAACTTTGGCT+GGG | + | chr7_3:63597098-63597117 | None:intergenic | 45.0% | |
| AGGATCTTGACAACTTTGGC+TGG | + | chr7_3:63597099-63597118 | None:intergenic | 45.0% | |
| AGATCCTACTTAGGATCGTG+AGG | - | chr7_3:63597112-63597131 | Msa1116060:intron | 45.0% | |
| TCTCAAAGCTTCTGGTAGCA+GGG | + | chr7_3:63597304-63597323 | None:intergenic | 45.0% | |
| TTCTCAAAGCTTCTGGTAGC+AGG | + | chr7_3:63597305-63597324 | None:intergenic | 45.0% | |
| TGCACAAGTAGAGAGGAACT+TGG | - | chr7_3:63597325-63597344 | Msa1116060:intron | 45.0% | |
| GCACAAGTAGAGAGGAACTT+GGG | - | chr7_3:63597326-63597345 | Msa1116060:intron | 45.0% | |
| AAGTAGAGAGGAACTTGGGA+GGG | - | chr7_3:63597330-63597349 | Msa1116060:intron | 45.0% | |
| ! | TTGCGAGTTAGTTTACCCAG+TGG | - | chr7_3:63597493-63597512 | Msa1116060:intron | 45.0% |
| CTGATTGGACCATGACAAAC+AGG | - | chr7_3:63597604-63597623 | Msa1116060:intron | 45.0% | |
| GGGAATAGGAACTCAGTTAG+TGG | - | chr7_3:63597678-63597697 | Msa1116060:intron | 45.0% | |
| GAAACACACACACAACCACA+AGG | + | chr7_3:63597986-63598005 | None:intergenic | 45.0% | |
| TGAAGAAACTCGCAGCATGA+GGG | + | chr7_3:63598318-63598337 | None:intergenic | 45.0% | |
| AATTTCTGCCGGATCAGCAT+TGG | - | chr7_3:63598454-63598473 | Msa1116060:intron | 45.0% | |
| TGTGAAAGCCAATGCTGATC+CGG | + | chr7_3:63598465-63598484 | None:intergenic | 45.0% | |
| ! | GAGCCAGTTGTTTGTTGAGT+TGG | - | chr7_3:63598654-63598673 | Msa1116060:intron | 45.0% |
| AGCAGAACGTAGGTACTTCG+AGG | - | chr7_3:63596425-63596444 | Msa1116060:intron | 50.0% | |
| ACGTAGGTACTTCGAGGATG+AGG | - | chr7_3:63596431-63596450 | Msa1116060:intron | 50.0% | |
| ACGAGGAACATCATACCAGG+TGG | + | chr7_3:63596532-63596551 | None:intergenic | 50.0% | |
| GACACGAGGAACATCATACC+AGG | + | chr7_3:63596535-63596554 | None:intergenic | 50.0% | |
| !! | CGAGAGAAGTGTTGCTCTTC+CGG | - | chr7_3:63596554-63596573 | Msa1116060:intron | 50.0% |
| !! | GAGAGAAGTGTTGCTCTTCC+GGG | - | chr7_3:63596555-63596574 | Msa1116060:intron | 50.0% |
| !! | AGAGAAGTGTTGCTCTTCCG+GGG | - | chr7_3:63596556-63596575 | Msa1116060:intron | 50.0% |
| GCCATAGGAGGAGTCTACAT+AGG | - | chr7_3:63596627-63596646 | Msa1116060:intron | 50.0% | |
| CCCTATGTAGACTCCTCCTA+TGG | + | chr7_3:63596631-63596650 | None:intergenic | 50.0% | |
| AGTCTACATAGGGGTGGAAC+AGG | - | chr7_3:63596638-63596657 | Msa1116060:intron | 50.0% | |
| AACAGGTGGTGCAGAACTAC+AGG | - | chr7_3:63596655-63596674 | Msa1116060:intron | 50.0% | |
| !! | GCTGTTGGTGGATTTGTTGC+TGG | - | chr7_3:63596702-63596721 | Msa1116060:intron | 50.0% |
| TCCTACTTAGGATCGTGAGG+AGG | - | chr7_3:63597115-63597134 | Msa1116060:intron | 50.0% | |
| CCTACTTAGGATCGTGAGGA+GGG | - | chr7_3:63597116-63597135 | Msa1116060:intron | 50.0% | |
| !! | GTAGTGGGTCAAGGGTGATA+GGG | + | chr7_3:63597271-63597290 | None:intergenic | 50.0% |
| !! | TGTAGTGGGTCAAGGGTGAT+AGG | + | chr7_3:63597272-63597291 | None:intergenic | 50.0% |
| !! | GTGCTTGTGTAGTGGGTCAA+GGG | + | chr7_3:63597279-63597298 | None:intergenic | 50.0% |
| !! | TGTGCTTGTGTAGTGGGTCA+AGG | + | chr7_3:63597280-63597299 | None:intergenic | 50.0% |
| CAAGTAGAGAGGAACTTGGG+AGG | - | chr7_3:63597329-63597348 | Msa1116060:intron | 50.0% | |
| GATTGGGAGCCTGTTTGTCA+TGG | + | chr7_3:63597616-63597635 | None:intergenic | 50.0% | |
| ACGGTTAGTGATGCAGACTC+TGG | - | chr7_3:63597714-63597733 | Msa1116060:intron | 50.0% | |
| CGGTTAGTGATGCAGACTCT+GGG | - | chr7_3:63597715-63597734 | Msa1116060:intron | 50.0% | |
| CTGAAGAAACTCGCAGCATG+AGG | + | chr7_3:63598319-63598338 | None:intergenic | 50.0% | |
| AAGCTGGCGCAGTAGAACTA+GGG | - | chr7_3:63598844-63598863 | Msa1116060:five_prime_UTR | 50.0% | |
| GCAACACTTCTCTCGACACG+AGG | + | chr7_3:63596549-63596568 | None:intergenic | 55.0% | |
| AGGAGGAGTCTACATAGGGG+TGG | - | chr7_3:63596632-63596651 | Msa1116060:intron | 55.0% | |
| CTACATAGGGGTGGAACAGG+TGG | - | chr7_3:63596641-63596660 | Msa1116060:intron | 55.0% | |
| CCCTCCTCACGATCCTAAGT+AGG | + | chr7_3:63597119-63597138 | None:intergenic | 55.0% | |
| CAGGGCTGTGCTTGTGTAGT+GGG | + | chr7_3:63597286-63597305 | None:intergenic | 55.0% | |
| AGAGGAACTTGGGAGGGATG+AGG | - | chr7_3:63597336-63597355 | Msa1116060:intron | 55.0% | |
| TTGGGAGGGATGAGGTTGAG+AGG | - | chr7_3:63597344-63597363 | Msa1116060:intron | 55.0% | |
| GAAGCTGGCGCAGTAGAACT+AGG | - | chr7_3:63598843-63598862 | Msa1116060:five_prime_UTR | 55.0% | |
| TGTGGAGGCCGCTCAGAGTT+TGG | - | chr7_3:63595729-63595748 | Msa1116060:three_prime_UTR | 60.0% | |
| !! | GGGGTACTGTAGTTGCCACC+TGG | - | chr7_3:63596514-63596533 | Msa1116060:intron | 60.0% |
| GACTCCTCCTATGGCGGCAA+AGG | + | chr7_3:63596622-63596641 | None:intergenic | 60.0% | |
| GCAGGGCTGTGCTTGTGTAG+TGG | + | chr7_3:63597287-63597306 | None:intergenic | 60.0% | |
| GGAGCGACCTTTGCCGCCAT+AGG | - | chr7_3:63596612-63596631 | Msa1116060:intron | 65.0% | |
| GCGACCTTTGCCGCCATAGG+AGG | - | chr7_3:63596615-63596634 | Msa1116060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63595636 | 63598959 | 63595636 | ID=Msa1116060;Name=Msa1116060 |
| chr7_3 | mRNA | 63595636 | 63598959 | 63595636 | ID=Msa1116060-mRNA-1;Parent=Msa1116060;Name=Msa1116060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=154|1|1|1|0.5|0.33|3|376|159 |
| chr7_3 | exon | 63595636 | 63596160 | 63595636 | ID=Msa1116060-mRNA-1:exon:14982;Parent=Msa1116060-mRNA-1 |
| chr7_3 | exon | 63597848 | 63598186 | 63597848 | ID=Msa1116060-mRNA-1:exon:14981;Parent=Msa1116060-mRNA-1 |
| chr7_3 | exon | 63598814 | 63598959 | 63598814 | ID=Msa1116060-mRNA-1:exon:14980;Parent=Msa1116060-mRNA-1 |
| chr7_3 | five_prime_UTR | 63598814 | 63598959 | 63598814 | ID=Msa1116060-mRNA-1:five_prime_utr;Parent=Msa1116060-mRNA-1 |
| chr7_3 | five_prime_UTR | 63598179 | 63598186 | 63598179 | ID=Msa1116060-mRNA-1:five_prime_utr;Parent=Msa1116060-mRNA-1 |
| chr7_3 | CDS | 63597848 | 63598178 | 63597848 | ID=Msa1116060-mRNA-1:cds;Parent=Msa1116060-mRNA-1 |
| chr7_3 | CDS | 63596012 | 63596160 | 63596012 | ID=Msa1116060-mRNA-1:cds;Parent=Msa1116060-mRNA-1 |
| chr7_3 | three_prime_UTR | 63595636 | 63596011 | 63595636 | ID=Msa1116060-mRNA-1:three_prime_utr;Parent=Msa1116060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
