AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687630 MtrunA17_Chr4g0038321 96.078 51 2 0 2 52 4 54 5.95e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687630 AT1G76200.1 82.927 41 7 0 11 51 11 51 3.07e-21 79.3

Find 30 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGACTCAAATGCTTC+TGG 0.192204 4_4:-52534675 None:intergenic
TTAACTTGGATGAAGCTTTA+TGG 0.212844 4_4:+52536592 Msa0687630:three_prime_UTR
ATGAATTGTTACGCCTTTGT+AGG 0.404079 4_4:-52534741 None:intergenic
CAGGCTTCAGCTGCAAAATC+AGG 0.411498 4_4:+52536430 Msa0687630:intron
CTCAAACATAGCTATGTTCA+TGG 0.414271 4_4:-52536558 None:intergenic
TTCATCCAAGTTAACAAGTA+AGG 0.435214 4_4:-52536583 None:intergenic
GACAGCACACAAGCCTTTGC+CGG 0.455205 4_4:-52534789 None:intergenic
GAGCACCTTACTTGTTAACT+TGG 0.460301 4_4:+52536578 Msa0687630:three_prime_UTR
GCAAGATGCTCCTGTAGTAT+TGG 0.487985 4_4:+52534949 Msa0687630:CDS
GTGACAGTGTGCCAACGCTT+AGG 0.492746 4_4:-52534767 None:intergenic
TGGCACACTGTCACCGGCAA+AGG 0.504987 4_4:+52534776 Msa0687630:CDS
AAAGAGATGGGTGGAGGACA+TGG 0.512507 4_4:+52534704 Msa0687630:exon
CAGAGAGAAATCGAAAGAGA+TGG 0.522927 4_4:+52534691 Msa0687630:exon
AAGCGTTGGCACACTGTCAC+CGG 0.526005 4_4:+52534770 Msa0687630:CDS
AGAGAGAAATCGAAAGAGAT+GGG 0.557927 4_4:+52534692 Msa0687630:exon
GAGAGTGTTACCAATACTAC+AGG 0.564259 4_4:-52534959 None:intergenic
AAATCGAAAGAGATGGGTGG+AGG 0.575752 4_4:+52534698 Msa0687630:exon
AAGGCTTGTGTGCTGTCATG+TGG 0.588655 4_4:+52534795 Msa0687630:CDS
ATGGGTGGAGGACATGGACA+TGG 0.596898 4_4:+52534710 Msa0687630:CDS
CAATTCATCAACCTAAGCGT+TGG 0.601027 4_4:+52534756 Msa0687630:CDS
TCACCCTTCGTATTAACGCA+TGG 0.628945 4_4:-52534637 None:intergenic
TAAACTTCTCACAAGAAACA+TGG 0.636973 4_4:-52536638 None:intergenic
ATGGCCATGCGTTAATACGA+AGG 0.640570 4_4:+52534633 Msa0687630:five_prime_UTR
TGGCCATGCGTTAATACGAA+GGG 0.642215 4_4:+52534634 Msa0687630:five_prime_UTR
GAGAAATCGAAAGAGATGGG+TGG 0.645016 4_4:+52534695 Msa0687630:exon
TCAGGAGCATCAGAACGTGA+AGG 0.665028 4_4:+52536448 Msa0687630:CDS
CATGGCGGAACAACCTACAA+AGG 0.672410 4_4:+52534728 Msa0687630:CDS
AGTTTGTGTCAACTACGACA+AGG 0.676732 4_4:+52536674 Msa0687630:three_prime_UTR
GGTGGAGGACATGGACATGG+CGG 0.678018 4_4:+52534713 Msa0687630:CDS
CGAAGGGTGAGATCTAGTGT+CGG 0.690985 4_4:+52534650 Msa0687630:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTAATTGTTTTTCTT+AGG + chr4_4:52534903-52534922 Msa0687630:intron 10.0%
!!! TTAAATTAATTGTTTTTCTT+AGG + chr4_4:52534903-52534922 Msa0687630:intron 10.0%
!! CGAAATTGAAAATAAAATTA+GGG - chr4_4:52534850-52534869 None:intergenic 15.0%
!! ACGAAATTGAAAATAAAATT+AGG - chr4_4:52534851-52534870 None:intergenic 15.0%
!!! ATTTGTTTTCTTTTACATTT+AGG + chr4_4:52535050-52535069 Msa0687630:intron 15.0%
!!! TTTGTTTTCTTTTACATTTA+GGG + chr4_4:52535051-52535070 Msa0687630:intron 15.0%
!! ATTTGATATAATTGACATAT+CGG - chr4_4:52535251-52535270 None:intergenic 15.0%
!!! AAATAATAGTATTAGTTCTT+GGG - chr4_4:52536062-52536081 None:intergenic 15.0%
!!! TAAATAATAGTATTAGTTCT+TGG - chr4_4:52536063-52536082 None:intergenic 15.0%
!! AATTCATTCATATTTAGTAA+AGG + chr4_4:52536262-52536281 Msa0687630:intron 15.0%
!! ATTAATTATTTCATTGTCTA+CGG - chr4_4:52536349-52536368 None:intergenic 15.0%
!! CGAAATTGAAAATAAAATTA+GGG - chr4_4:52534850-52534869 None:intergenic 15.0%
!! ACGAAATTGAAAATAAAATT+AGG - chr4_4:52534851-52534870 None:intergenic 15.0%
!!! ATTTGTTTTCTTTTACATTT+AGG + chr4_4:52535050-52535069 Msa0687630:intron 15.0%
!!! TTTGTTTTCTTTTACATTTA+GGG + chr4_4:52535051-52535070 Msa0687630:intron 15.0%
!! ATTTGATATAATTGACATAT+CGG - chr4_4:52535251-52535270 None:intergenic 15.0%
!!! AAATAATAGTATTAGTTCTT+GGG - chr4_4:52536062-52536081 None:intergenic 15.0%
!!! TAAATAATAGTATTAGTTCT+TGG - chr4_4:52536063-52536082 None:intergenic 15.0%
!! AATTCATTCATATTTAGTAA+AGG + chr4_4:52536262-52536281 Msa0687630:intron 15.0%
!! ATTAATTATTTCATTGTCTA+CGG - chr4_4:52536349-52536368 None:intergenic 15.0%
!!! TAATTGTTTTTCTTAGGTTT+TGG + chr4_4:52534909-52534928 Msa0687630:intron 20.0%
!!! AATTGTTTTTCTTAGGTTTT+GGG + chr4_4:52534910-52534929 Msa0687630:intron 20.0%
!! TATACAAATTGACAAAAAAG+TGG + chr4_4:52535290-52535309 Msa0687630:intron 20.0%
!!! TAATTTTCAAAGTACATAGT+AGG - chr4_4:52535970-52535989 None:intergenic 20.0%
!!! TACTATGTACTTTGAAAATT+AGG + chr4_4:52535969-52535988 Msa0687630:intron 20.0%
!! CTAAATATGAATGAATTAAC+AGG - chr4_4:52536259-52536278 None:intergenic 20.0%
!!! TAACATATGTATTGATTTCT+TGG + chr4_4:52536407-52536426 Msa0687630:intron 20.0%
!!! TAATTGTTTTTCTTAGGTTT+TGG + chr4_4:52534909-52534928 Msa0687630:intron 20.0%
!!! AATTGTTTTTCTTAGGTTTT+GGG + chr4_4:52534910-52534929 Msa0687630:intron 20.0%
!! TATACAAATTGACAAAAAAG+TGG + chr4_4:52535290-52535309 Msa0687630:intron 20.0%
!!! TAATTTTCAAAGTACATAGT+AGG - chr4_4:52535970-52535989 None:intergenic 20.0%
!!! TACTATGTACTTTGAAAATT+AGG + chr4_4:52535969-52535988 Msa0687630:intron 20.0%
!! CTAAATATGAATGAATTAAC+AGG - chr4_4:52536259-52536278 None:intergenic 20.0%
!!! TAACATATGTATTGATTTCT+TGG + chr4_4:52536407-52536426 Msa0687630:intron 20.0%
! TAAGAAATGAAAAGAGAAAG+AGG - chr4_4:52534827-52534846 None:intergenic 25.0%
!! ATTTTCTTAGGTATGATCAT+TGG + chr4_4:52535122-52535141 Msa0687630:intron 25.0%
! CAATTCACAATTAGGAAAAA+AGG - chr4_4:52535171-52535190 None:intergenic 25.0%
! TACTCATTCAATTCACAATT+AGG - chr4_4:52535179-52535198 None:intergenic 25.0%
! ATTATATCAAATGACATGTG+TGG + chr4_4:52535259-52535278 Msa0687630:intron 25.0%
! TTATATCAAATGACATGTGT+GGG + chr4_4:52535260-52535279 Msa0687630:intron 25.0%
! GTGATTCATTAGAATGAATT+GGG + chr4_4:52535335-52535354 Msa0687630:intron 25.0%
!! AGTAATTTGTGTATCATCAT+TGG + chr4_4:52535716-52535735 Msa0687630:intron 25.0%
!! TCTAAAAGTGTAGTAAAAGT+TGG + chr4_4:52535776-52535795 Msa0687630:intron 25.0%
! TGAAGAAAAAAAATCTCTAC+CGG - chr4_4:52535830-52535849 None:intergenic 25.0%
!!! ATTTGTTGACCTTTTCTTAT+GGG + chr4_4:52535992-52536011 Msa0687630:intron 25.0%
!! CACTTTCTTCAATTTTCATA+TGG + chr4_4:52536162-52536181 Msa0687630:intron 25.0%
! TTTGACAATATTTGTAGAAG+TGG + chr4_4:52536315-52536334 Msa0687630:intron 25.0%
! TTGACAATATTTGTAGAAGT+GGG + chr4_4:52536316-52536335 Msa0687630:intron 25.0%
! TAAGAAATGAAAAGAGAAAG+AGG - chr4_4:52534827-52534846 None:intergenic 25.0%
!! ATTTTCTTAGGTATGATCAT+TGG + chr4_4:52535122-52535141 Msa0687630:intron 25.0%
! CAATTCACAATTAGGAAAAA+AGG - chr4_4:52535171-52535190 None:intergenic 25.0%
! TACTCATTCAATTCACAATT+AGG - chr4_4:52535179-52535198 None:intergenic 25.0%
! ATTATATCAAATGACATGTG+TGG + chr4_4:52535259-52535278 Msa0687630:intron 25.0%
! TTATATCAAATGACATGTGT+GGG + chr4_4:52535260-52535279 Msa0687630:intron 25.0%
! GTGATTCATTAGAATGAATT+GGG + chr4_4:52535335-52535354 Msa0687630:intron 25.0%
!! AGTAATTTGTGTATCATCAT+TGG + chr4_4:52535716-52535735 Msa0687630:intron 25.0%
!! TCTAAAAGTGTAGTAAAAGT+TGG + chr4_4:52535776-52535795 Msa0687630:intron 25.0%
! TGAAGAAAAAAAATCTCTAC+CGG - chr4_4:52535830-52535849 None:intergenic 25.0%
!!! ATTTGTTGACCTTTTCTTAT+GGG + chr4_4:52535992-52536011 Msa0687630:intron 25.0%
!! CACTTTCTTCAATTTTCATA+TGG + chr4_4:52536162-52536181 Msa0687630:intron 25.0%
! TTTGACAATATTTGTAGAAG+TGG + chr4_4:52536315-52536334 Msa0687630:intron 25.0%
! TTGACAATATTTGTAGAAGT+GGG + chr4_4:52536316-52536335 Msa0687630:intron 25.0%
!! TTTTCTTTTACATTTAGGGC+TGG + chr4_4:52535055-52535074 Msa0687630:intron 30.0%
! AGACGAGCATTAATTTTCTT+AGG + chr4_4:52535110-52535129 Msa0687630:intron 30.0%
GGTGATTCATTAGAATGAAT+TGG + chr4_4:52535334-52535353 Msa0687630:intron 30.0%
TGTGTATCTATCTGTCTATT+TGG - chr4_4:52535381-52535400 None:intergenic 30.0%
! TTTTATATGACAAAGTTCCC+AGG + chr4_4:52535572-52535591 Msa0687630:intron 30.0%
TTTATATGACAAAGTTCCCA+GGG + chr4_4:52535573-52535592 Msa0687630:intron 30.0%
AACTCTGGTATTCAAATATC+TGG + chr4_4:52535637-52535656 Msa0687630:intron 30.0%
!!! GATTTGTTGACCTTTTCTTA+TGG + chr4_4:52535991-52536010 Msa0687630:intron 30.0%
! GTATACCTTTTAATGAAGCA+AGG + chr4_4:52536184-52536203 Msa0687630:intron 30.0%
ATTGTCCTTGCTTCATTAAA+AGG - chr4_4:52536192-52536211 None:intergenic 30.0%
TGCAACTGTGAAAATAAAGA+GGG - chr4_4:52536228-52536247 None:intergenic 30.0%
TTGCAACTGTGAAAATAAAG+AGG - chr4_4:52536229-52536248 None:intergenic 30.0%
AATATTTGTAGAAGTGGGAT+TGG + chr4_4:52536321-52536340 Msa0687630:intron 30.0%
ATATTTGTAGAAGTGGGATT+GGG + chr4_4:52536322-52536341 Msa0687630:intron 30.0%
!! ATATGTATTGATTTCTTGGC+AGG + chr4_4:52536411-52536430 Msa0687630:intron 30.0%
TTCATCCAAGTTAACAAGTA+AGG - chr4_4:52536586-52536605 None:intergenic 30.0%
! TTAACTTGGATGAAGCTTTA+TGG + chr4_4:52536592-52536611 Msa0687630:three_prime_UTR 30.0%
TAAACTTCTCACAAGAAACA+TGG - chr4_4:52536641-52536660 None:intergenic 30.0%
!! TTTTCTTTTACATTTAGGGC+TGG + chr4_4:52535055-52535074 Msa0687630:intron 30.0%
! AGACGAGCATTAATTTTCTT+AGG + chr4_4:52535110-52535129 Msa0687630:intron 30.0%
GGTGATTCATTAGAATGAAT+TGG + chr4_4:52535334-52535353 Msa0687630:intron 30.0%
TGTGTATCTATCTGTCTATT+TGG - chr4_4:52535381-52535400 None:intergenic 30.0%
! TTTTATATGACAAAGTTCCC+AGG + chr4_4:52535572-52535591 Msa0687630:intron 30.0%
TTTATATGACAAAGTTCCCA+GGG + chr4_4:52535573-52535592 Msa0687630:intron 30.0%
AACTCTGGTATTCAAATATC+TGG + chr4_4:52535637-52535656 Msa0687630:intron 30.0%
!!! GATTTGTTGACCTTTTCTTA+TGG + chr4_4:52535991-52536010 Msa0687630:intron 30.0%
! GTATACCTTTTAATGAAGCA+AGG + chr4_4:52536184-52536203 Msa0687630:intron 30.0%
ATTGTCCTTGCTTCATTAAA+AGG - chr4_4:52536192-52536211 None:intergenic 30.0%
TGCAACTGTGAAAATAAAGA+GGG - chr4_4:52536228-52536247 None:intergenic 30.0%
TTGCAACTGTGAAAATAAAG+AGG - chr4_4:52536229-52536248 None:intergenic 30.0%
AATATTTGTAGAAGTGGGAT+TGG + chr4_4:52536321-52536340 Msa0687630:intron 30.0%
ATATTTGTAGAAGTGGGATT+GGG + chr4_4:52536322-52536341 Msa0687630:intron 30.0%
!! ATATGTATTGATTTCTTGGC+AGG + chr4_4:52536411-52536430 Msa0687630:intron 30.0%
TTCATCCAAGTTAACAAGTA+AGG - chr4_4:52536586-52536605 None:intergenic 30.0%
! TTAACTTGGATGAAGCTTTA+TGG + chr4_4:52536592-52536611 Msa0687630:three_prime_UTR 30.0%
TAAACTTCTCACAAGAAACA+TGG - chr4_4:52536641-52536660 None:intergenic 30.0%
AGAGAGAAATCGAAAGAGAT+GGG + chr4_4:52534692-52534711 Msa0687630:exon 35.0%
ATGAATTGTTACGCCTTTGT+AGG - chr4_4:52534744-52534763 None:intergenic 35.0%
TGGTTTCCTACACTATGTTT+AGG + chr4_4:52535310-52535329 Msa0687630:intron 35.0%
TTTCCTACACTATGTTTAGG+TGG + chr4_4:52535313-52535332 Msa0687630:intron 35.0%
TTTATACACCCAATGCATCT+AGG + chr4_4:52535499-52535518 Msa0687630:intron 35.0%
TTATATGACAAAGTTCCCAG+GGG + chr4_4:52535574-52535593 Msa0687630:intron 35.0%
!! AAAGTTGGTATGTACATGTG+TGG + chr4_4:52535791-52535810 Msa0687630:intron 35.0%
GTGTGGTATTCATGATTTAC+CGG + chr4_4:52535808-52535827 Msa0687630:intron 35.0%
AGAGGTTAAATCAGGTTCAA+CGG - chr4_4:52535941-52535960 None:intergenic 35.0%
AGACATACTCCCATAAGAAA+AGG - chr4_4:52536004-52536023 None:intergenic 35.0%
AAGTACGATTTATCACCAAC+AGG + chr4_4:52536082-52536101 Msa0687630:intron 35.0%
AGAAGTTTAGTATGACCTGT+TGG - chr4_4:52536100-52536119 None:intergenic 35.0%
TATTTGTAGAAGTGGGATTG+GGG + chr4_4:52536323-52536342 Msa0687630:intron 35.0%
CTCAAACATAGCTATGTTCA+TGG - chr4_4:52536561-52536580 None:intergenic 35.0%
AGAGAGAAATCGAAAGAGAT+GGG + chr4_4:52534692-52534711 Msa0687630:exon 35.0%
ATGAATTGTTACGCCTTTGT+AGG - chr4_4:52534744-52534763 None:intergenic 35.0%
TGGTTTCCTACACTATGTTT+AGG + chr4_4:52535310-52535329 Msa0687630:intron 35.0%
TTTCCTACACTATGTTTAGG+TGG + chr4_4:52535313-52535332 Msa0687630:intron 35.0%
TTTATACACCCAATGCATCT+AGG + chr4_4:52535499-52535518 Msa0687630:intron 35.0%
TTATATGACAAAGTTCCCAG+GGG + chr4_4:52535574-52535593 Msa0687630:intron 35.0%
!! AAAGTTGGTATGTACATGTG+TGG + chr4_4:52535791-52535810 Msa0687630:intron 35.0%
GTGTGGTATTCATGATTTAC+CGG + chr4_4:52535808-52535827 Msa0687630:intron 35.0%
AGAGGTTAAATCAGGTTCAA+CGG - chr4_4:52535941-52535960 None:intergenic 35.0%
AGACATACTCCCATAAGAAA+AGG - chr4_4:52536004-52536023 None:intergenic 35.0%
AAGTACGATTTATCACCAAC+AGG + chr4_4:52536082-52536101 Msa0687630:intron 35.0%
AGAAGTTTAGTATGACCTGT+TGG - chr4_4:52536100-52536119 None:intergenic 35.0%
TATTTGTAGAAGTGGGATTG+GGG + chr4_4:52536323-52536342 Msa0687630:intron 35.0%
CTCAAACATAGCTATGTTCA+TGG - chr4_4:52536561-52536580 None:intergenic 35.0%
CAGAGAGAAATCGAAAGAGA+TGG + chr4_4:52534691-52534710 Msa0687630:exon 40.0%
CAATTCATCAACCTAAGCGT+TGG + chr4_4:52534756-52534775 Msa0687630:CDS 40.0%
!! GAGAGTGTTACCAATACTAC+AGG - chr4_4:52534962-52534981 None:intergenic 40.0%
!! TCTTTTACATTTAGGGCTGG+AGG + chr4_4:52535058-52535077 Msa0687630:intron 40.0%
! CAAATGACATGTGTGGGTTA+TGG + chr4_4:52535266-52535285 Msa0687630:intron 40.0%
TCACCACCTAAACATAGTGT+AGG - chr4_4:52535319-52535338 None:intergenic 40.0%
GACAGATAGATACACACTAG+AGG + chr4_4:52535385-52535404 Msa0687630:intron 40.0%
!!! CCTAGATTTTGAAACGTCAC+AGG - chr4_4:52535549-52535568 None:intergenic 40.0%
CCTGTGACGTTTCAAAATCT+AGG + chr4_4:52535546-52535565 Msa0687630:intron 40.0%
GGGACAAATAAGTGTAACTC+TGG + chr4_4:52535622-52535641 Msa0687630:intron 40.0%
ACATCATGTGGAACTATCAG+GGG - chr4_4:52535904-52535923 None:intergenic 40.0%
GACATCATGTGGAACTATCA+GGG - chr4_4:52535905-52535924 None:intergenic 40.0%
! GAGCACCTTACTTGTTAACT+TGG + chr4_4:52536578-52536597 Msa0687630:three_prime_UTR 40.0%
AGTTTGTGTCAACTACGACA+AGG + chr4_4:52536674-52536693 Msa0687630:three_prime_UTR 40.0%
CAGAGAGAAATCGAAAGAGA+TGG + chr4_4:52534691-52534710 Msa0687630:exon 40.0%
CAATTCATCAACCTAAGCGT+TGG + chr4_4:52534756-52534775 Msa0687630:CDS 40.0%
!! GAGAGTGTTACCAATACTAC+AGG - chr4_4:52534962-52534981 None:intergenic 40.0%
!! TCTTTTACATTTAGGGCTGG+AGG + chr4_4:52535058-52535077 Msa0687630:intron 40.0%
! CAAATGACATGTGTGGGTTA+TGG + chr4_4:52535266-52535285 Msa0687630:intron 40.0%
TCACCACCTAAACATAGTGT+AGG - chr4_4:52535319-52535338 None:intergenic 40.0%
GACAGATAGATACACACTAG+AGG + chr4_4:52535385-52535404 Msa0687630:intron 40.0%
!!! CCTAGATTTTGAAACGTCAC+AGG - chr4_4:52535549-52535568 None:intergenic 40.0%
CCTGTGACGTTTCAAAATCT+AGG + chr4_4:52535546-52535565 Msa0687630:intron 40.0%
GGGACAAATAAGTGTAACTC+TGG + chr4_4:52535622-52535641 Msa0687630:intron 40.0%
ACATCATGTGGAACTATCAG+GGG - chr4_4:52535904-52535923 None:intergenic 40.0%
GACATCATGTGGAACTATCA+GGG - chr4_4:52535905-52535924 None:intergenic 40.0%
! GAGCACCTTACTTGTTAACT+TGG + chr4_4:52536578-52536597 Msa0687630:three_prime_UTR 40.0%
AGTTTGTGTCAACTACGACA+AGG + chr4_4:52536674-52536693 Msa0687630:three_prime_UTR 40.0%
ATGGCCATGCGTTAATACGA+AGG + chr4_4:52534633-52534652 Msa0687630:five_prime_UTR 45.0%
TGGCCATGCGTTAATACGAA+GGG + chr4_4:52534634-52534653 Msa0687630:five_prime_UTR 45.0%
TCACCCTTCGTATTAACGCA+TGG - chr4_4:52534640-52534659 None:intergenic 45.0%
CTCTCTGACTCAAATGCTTC+TGG - chr4_4:52534678-52534697 None:intergenic 45.0%
GAGAAATCGAAAGAGATGGG+TGG + chr4_4:52534695-52534714 Msa0687630:exon 45.0%
AAATCGAAAGAGATGGGTGG+AGG + chr4_4:52534698-52534717 Msa0687630:exon 45.0%
GCAAGATGCTCCTGTAGTAT+TGG + chr4_4:52534949-52534968 Msa0687630:CDS 45.0%
CTCCTAGTCCTAGATGCATT+GGG - chr4_4:52535510-52535529 None:intergenic 45.0%
! CAATGCATCTAGGACTAGGA+GGG + chr4_4:52535509-52535528 Msa0687630:intron 45.0%
TGGACACTGGATGGAATAGT+GGG + chr4_4:52535597-52535616 Msa0687630:intron 45.0%
GGACATCATGTGGAACTATC+AGG - chr4_4:52535906-52535925 None:intergenic 45.0%
AGGTTCAACGGAAGAAGATC+GGG - chr4_4:52535929-52535948 None:intergenic 45.0%
CAGGTTCAACGGAAGAAGAT+CGG - chr4_4:52535930-52535949 None:intergenic 45.0%
GGCTTAGCAGAGGTTAAATC+AGG - chr4_4:52535949-52535968 None:intergenic 45.0%
GTACATAGTAGGCTTAGCAG+AGG - chr4_4:52535959-52535978 None:intergenic 45.0%
ATGGCCATGCGTTAATACGA+AGG + chr4_4:52534633-52534652 Msa0687630:five_prime_UTR 45.0%
TGGCCATGCGTTAATACGAA+GGG + chr4_4:52534634-52534653 Msa0687630:five_prime_UTR 45.0%
TCACCCTTCGTATTAACGCA+TGG - chr4_4:52534640-52534659 None:intergenic 45.0%
CTCTCTGACTCAAATGCTTC+TGG - chr4_4:52534678-52534697 None:intergenic 45.0%
GAGAAATCGAAAGAGATGGG+TGG + chr4_4:52534695-52534714 Msa0687630:exon 45.0%
AAATCGAAAGAGATGGGTGG+AGG + chr4_4:52534698-52534717 Msa0687630:exon 45.0%
GCAAGATGCTCCTGTAGTAT+TGG + chr4_4:52534949-52534968 Msa0687630:CDS 45.0%
CTCCTAGTCCTAGATGCATT+GGG - chr4_4:52535510-52535529 None:intergenic 45.0%
! CAATGCATCTAGGACTAGGA+GGG + chr4_4:52535509-52535528 Msa0687630:intron 45.0%
TGGACACTGGATGGAATAGT+GGG + chr4_4:52535597-52535616 Msa0687630:intron 45.0%
GGACATCATGTGGAACTATC+AGG - chr4_4:52535906-52535925 None:intergenic 45.0%
AGGTTCAACGGAAGAAGATC+GGG - chr4_4:52535929-52535948 None:intergenic 45.0%
CAGGTTCAACGGAAGAAGAT+CGG - chr4_4:52535930-52535949 None:intergenic 45.0%
GGCTTAGCAGAGGTTAAATC+AGG - chr4_4:52535949-52535968 None:intergenic 45.0%
GTACATAGTAGGCTTAGCAG+AGG - chr4_4:52535959-52535978 None:intergenic 45.0%
CGAAGGGTGAGATCTAGTGT+CGG + chr4_4:52534650-52534669 Msa0687630:five_prime_UTR 50.0%
AAAGAGATGGGTGGAGGACA+TGG + chr4_4:52534704-52534723 Msa0687630:exon 50.0%
! CATGGCGGAACAACCTACAA+AGG + chr4_4:52534728-52534747 Msa0687630:CDS 50.0%
AAGGCTTGTGTGCTGTCATG+TGG + chr4_4:52534795-52534814 Msa0687630:CDS 50.0%
! CACCCAATGCATCTAGGACT+AGG + chr4_4:52535505-52535524 Msa0687630:intron 50.0%
CCTCCTAGTCCTAGATGCAT+TGG - chr4_4:52535511-52535530 None:intergenic 50.0%
! CCAATGCATCTAGGACTAGG+AGG + chr4_4:52535508-52535527 Msa0687630:intron 50.0%
! CATCTAGGACTAGGAGGGTT+TGG + chr4_4:52535514-52535533 Msa0687630:intron 50.0%
TATGACAAAGTTCCCAGGGG+TGG + chr4_4:52535577-52535596 Msa0687630:intron 50.0%
GTGGACACTGGATGGAATAG+TGG + chr4_4:52535596-52535615 Msa0687630:intron 50.0%
! ACACTGGATGGAATAGTGGG+AGG + chr4_4:52535600-52535619 Msa0687630:intron 50.0%
! CACTGGATGGAATAGTGGGA+GGG + chr4_4:52535601-52535620 Msa0687630:intron 50.0%
! ACTGGATGGAATAGTGGGAG+GGG + chr4_4:52535602-52535621 Msa0687630:intron 50.0%
TCATGTGGAACTATCAGGGG+TGG - chr4_4:52535901-52535920 None:intergenic 50.0%
GTTCAACGGAAGAAGATCGG+GGG - chr4_4:52535927-52535946 None:intergenic 50.0%
GGTTCAACGGAAGAAGATCG+GGG - chr4_4:52535928-52535947 None:intergenic 50.0%
CAGGCTTCAGCTGCAAAATC+AGG + chr4_4:52536430-52536449 Msa0687630:intron 50.0%
!! TCAGGAGCATCAGAACGTGA+AGG + chr4_4:52536448-52536467 Msa0687630:CDS 50.0%
CGAAGGGTGAGATCTAGTGT+CGG + chr4_4:52534650-52534669 Msa0687630:five_prime_UTR 50.0%
AAAGAGATGGGTGGAGGACA+TGG + chr4_4:52534704-52534723 Msa0687630:exon 50.0%
! CATGGCGGAACAACCTACAA+AGG + chr4_4:52534728-52534747 Msa0687630:CDS 50.0%
AAGGCTTGTGTGCTGTCATG+TGG + chr4_4:52534795-52534814 Msa0687630:CDS 50.0%
! CACCCAATGCATCTAGGACT+AGG + chr4_4:52535505-52535524 Msa0687630:intron 50.0%
CCTCCTAGTCCTAGATGCAT+TGG - chr4_4:52535511-52535530 None:intergenic 50.0%
! CCAATGCATCTAGGACTAGG+AGG + chr4_4:52535508-52535527 Msa0687630:intron 50.0%
! CATCTAGGACTAGGAGGGTT+TGG + chr4_4:52535514-52535533 Msa0687630:intron 50.0%
TATGACAAAGTTCCCAGGGG+TGG + chr4_4:52535577-52535596 Msa0687630:intron 50.0%
GTGGACACTGGATGGAATAG+TGG + chr4_4:52535596-52535615 Msa0687630:intron 50.0%
! ACACTGGATGGAATAGTGGG+AGG + chr4_4:52535600-52535619 Msa0687630:intron 50.0%
! CACTGGATGGAATAGTGGGA+GGG + chr4_4:52535601-52535620 Msa0687630:intron 50.0%
! ACTGGATGGAATAGTGGGAG+GGG + chr4_4:52535602-52535621 Msa0687630:intron 50.0%
TCATGTGGAACTATCAGGGG+TGG - chr4_4:52535901-52535920 None:intergenic 50.0%
GTTCAACGGAAGAAGATCGG+GGG - chr4_4:52535927-52535946 None:intergenic 50.0%
GGTTCAACGGAAGAAGATCG+GGG - chr4_4:52535928-52535947 None:intergenic 50.0%
CAGGCTTCAGCTGCAAAATC+AGG + chr4_4:52536430-52536449 Msa0687630:intron 50.0%
!! TCAGGAGCATCAGAACGTGA+AGG + chr4_4:52536448-52536467 Msa0687630:CDS 50.0%
ATGGGTGGAGGACATGGACA+TGG + chr4_4:52534710-52534729 Msa0687630:CDS 55.0%
GTGACAGTGTGCCAACGCTT+AGG - chr4_4:52534770-52534789 None:intergenic 55.0%
!! AAGCGTTGGCACACTGTCAC+CGG + chr4_4:52534770-52534789 Msa0687630:CDS 55.0%
GACAGCACACAAGCCTTTGC+CGG - chr4_4:52534792-52534811 None:intergenic 55.0%
!! TTTAGGGCTGGAGGCATCCT+TGG + chr4_4:52535067-52535086 Msa0687630:intron 55.0%
!! TTAGGGCTGGAGGCATCCTT+GGG + chr4_4:52535068-52535087 Msa0687630:intron 55.0%
TGATCACCATGACCCTCCCA+AGG - chr4_4:52535087-52535106 None:intergenic 55.0%
TGGGAGGGTCATGGTGATCA+TGG + chr4_4:52535087-52535106 Msa0687630:intron 55.0%
! TCCTAGGTGTGGCTCTATGG+TGG - chr4_4:52535870-52535889 None:intergenic 55.0%
ACCATAGAGCCACACCTAGG+AGG + chr4_4:52535869-52535888 Msa0687630:intron 55.0%
GAAGATCGGGGGACATCATG+TGG - chr4_4:52535916-52535935 None:intergenic 55.0%
ATGGGTGGAGGACATGGACA+TGG + chr4_4:52534710-52534729 Msa0687630:CDS 55.0%
GTGACAGTGTGCCAACGCTT+AGG - chr4_4:52534770-52534789 None:intergenic 55.0%
!! AAGCGTTGGCACACTGTCAC+CGG + chr4_4:52534770-52534789 Msa0687630:CDS 55.0%
GACAGCACACAAGCCTTTGC+CGG - chr4_4:52534792-52534811 None:intergenic 55.0%
!! TTTAGGGCTGGAGGCATCCT+TGG + chr4_4:52535067-52535086 Msa0687630:intron 55.0%
!! TTAGGGCTGGAGGCATCCTT+GGG + chr4_4:52535068-52535087 Msa0687630:intron 55.0%
TGATCACCATGACCCTCCCA+AGG - chr4_4:52535087-52535106 None:intergenic 55.0%
TGGGAGGGTCATGGTGATCA+TGG + chr4_4:52535087-52535106 Msa0687630:intron 55.0%
! TCCTAGGTGTGGCTCTATGG+TGG - chr4_4:52535870-52535889 None:intergenic 55.0%
ACCATAGAGCCACACCTAGG+AGG + chr4_4:52535869-52535888 Msa0687630:intron 55.0%
GAAGATCGGGGGACATCATG+TGG - chr4_4:52535916-52535935 None:intergenic 55.0%
GGTGGAGGACATGGACATGG+CGG + chr4_4:52534713-52534732 Msa0687630:CDS 60.0%
TGGCACACTGTCACCGGCAA+AGG + chr4_4:52534776-52534795 Msa0687630:CDS 60.0%
AGGCATCCTTGGGAGGGTCA+TGG + chr4_4:52535078-52535097 Msa0687630:intron 60.0%
AAGTTCCCAGGGGTGGACAC+TGG + chr4_4:52535584-52535603 Msa0687630:intron 60.0%
TCCATCCAGTGTCCACCCCT+GGG - chr4_4:52535592-52535611 None:intergenic 60.0%
TTCCATCCAGTGTCCACCCC+TGG - chr4_4:52535593-52535612 None:intergenic 60.0%
GCCACCATAGAGCCACACCT+AGG + chr4_4:52535866-52535885 Msa0687630:intron 60.0%
! GCCTCCTAGGTGTGGCTCTA+TGG - chr4_4:52535873-52535892 None:intergenic 60.0%
AGAGCCACACCTAGGAGGCT+AGG + chr4_4:52535874-52535893 Msa0687630:intron 60.0%
TGGACCTAGCCTCCTAGGTG+TGG - chr4_4:52535881-52535900 None:intergenic 60.0%
GGTGGAGGACATGGACATGG+CGG + chr4_4:52534713-52534732 Msa0687630:CDS 60.0%
TGGCACACTGTCACCGGCAA+AGG + chr4_4:52534776-52534795 Msa0687630:CDS 60.0%
AGGCATCCTTGGGAGGGTCA+TGG + chr4_4:52535078-52535097 Msa0687630:intron 60.0%
AAGTTCCCAGGGGTGGACAC+TGG + chr4_4:52535584-52535603 Msa0687630:intron 60.0%
TCCATCCAGTGTCCACCCCT+GGG - chr4_4:52535592-52535611 None:intergenic 60.0%
TTCCATCCAGTGTCCACCCC+TGG - chr4_4:52535593-52535612 None:intergenic 60.0%
GCCACCATAGAGCCACACCT+AGG + chr4_4:52535866-52535885 Msa0687630:intron 60.0%
! GCCTCCTAGGTGTGGCTCTA+TGG - chr4_4:52535873-52535892 None:intergenic 60.0%
AGAGCCACACCTAGGAGGCT+AGG + chr4_4:52535874-52535893 Msa0687630:intron 60.0%
TGGACCTAGCCTCCTAGGTG+TGG - chr4_4:52535881-52535900 None:intergenic 60.0%
!! GGCTGGAGGCATCCTTGGGA+GGG + chr4_4:52535072-52535091 Msa0687630:intron 65.0%
TCCCAGGGGTGGACACTGGA+TGG + chr4_4:52535588-52535607 Msa0687630:intron 65.0%
AGGGGTGGACCTAGCCTCCT+AGG - chr4_4:52535886-52535905 None:intergenic 65.0%
!! GGCTGGAGGCATCCTTGGGA+GGG + chr4_4:52535072-52535091 Msa0687630:intron 65.0%
TCCCAGGGGTGGACACTGGA+TGG + chr4_4:52535588-52535607 Msa0687630:intron 65.0%
AGGGGTGGACCTAGCCTCCT+AGG - chr4_4:52535886-52535905 None:intergenic 65.0%
!! GGGCTGGAGGCATCCTTGGG+AGG + chr4_4:52535071-52535090 Msa0687630:intron 70.0%
!! GGGCTGGAGGCATCCTTGGG+AGG + chr4_4:52535071-52535090 Msa0687630:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 52534633 52536737 52534633 ID=Msa0687630;Name=Msa0687630
chr4_4 mRNA 52534633 52536737 52534633 ID=Msa0687630-mRNA-1;Parent=Msa0687630;Name=Msa0687630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|0.5|1|1|1|1|3|215|80
chr4_4 exon 52534633 52534816 52534633 ID=Msa0687630-mRNA-1:exon:13786;Parent=Msa0687630-mRNA-1
chr4_4 exon 52534925 52534970 52534925 ID=Msa0687630-mRNA-1:exon:13787;Parent=Msa0687630-mRNA-1
chr4_4 exon 52536433 52536737 52536433 ID=Msa0687630-mRNA-1:exon:13788;Parent=Msa0687630-mRNA-1
chr4_4 five_prime_UTR 52534633 52534709 52534633 ID=Msa0687630-mRNA-1:five_prime_utr;Parent=Msa0687630-mRNA-1
chr4_4 CDS 52534710 52534816 52534710 ID=Msa0687630-mRNA-1:cds;Parent=Msa0687630-mRNA-1
chr4_4 CDS 52534925 52534970 52534925 ID=Msa0687630-mRNA-1:cds;Parent=Msa0687630-mRNA-1
chr4_4 CDS 52536433 52536522 52536433 ID=Msa0687630-mRNA-1:cds;Parent=Msa0687630-mRNA-1
chr4_4 three_prime_UTR 52536523 52536737 52536523 ID=Msa0687630-mRNA-1:three_prime_utr;Parent=Msa0687630-mRNA-1
Gene Sequence

>Msa0687630

ATGGGTGGAGGACATGGACATGGCGGAACAACCTACAAAGGCGTAACAATTCATCAACCTAAGCGTTGGCACACTGTCACCGGCAAAGGCTTGTGTGCTGTCATGTGGTTTTGGGTCATGTACAGAGCAAAGCAAGATGCTCCTGTAGTATTGGCTTCAGCTGCAAAATCAGGAGCATCAGAACGTGAAGGATCTGTGTTCATGAATGTGTTAATCAAATGTTTACTTTGTTTCATTCAATAA

Protein sequence

>Msa0687630

MGGGHGHGGTTYKGVTIHQPKRWHTVTGKGLCAVMWFWVMYRAKQDAPVVLASAAKSGASEREGSVFMNVLIKCLLCFIQ*