AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404190 MtrunA17_Chr4g0038321 96.078 51 2 0 2 52 4 54 5.95e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404190 AT1G76200.1 82.927 41 7 0 11 51 11 51 3.07e-21 79.3

Find 30 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGACTCAAATGCTTC+TGG 0.192204 tig0023048:-22095 Msa1404190:intergenic
TTAACTTGGATGAAGCTTTA+TGG 0.212844 tig0023048:+24007 Msa1404190:three_prime_UTR
ATGAATTGTTACGCCTTTGT+AGG 0.404079 tig0023048:-22161 Msa1404190:intergenic
CAGGCTTCAGCTGCAAAATC+AGG 0.411498 tig0023048:+23845 Msa1404190:intron
CTCAAACATAGCTATGTTCA+TGG 0.414271 tig0023048:-23973 Msa1404190:intergenic
TTCATCCAAGTTAACAAGTA+AGG 0.435214 tig0023048:-23998 Msa1404190:intergenic
GACAGCACACAAGCCTTTGC+CGG 0.455205 tig0023048:-22209 Msa1404190:intergenic
GAGCACCTTACTTGTTAACT+TGG 0.460301 tig0023048:+23993 Msa1404190:three_prime_UTR
GCAAGATGCTCCTGTAGTAT+TGG 0.487985 tig0023048:+22369 Msa1404190:CDS
GTGACAGTGTGCCAACGCTT+AGG 0.492746 tig0023048:-22187 Msa1404190:intergenic
TGGCACACTGTCACCGGCAA+AGG 0.504987 tig0023048:+22196 Msa1404190:CDS
AAAGAGATGGGTGGAGGACA+TGG 0.512507 tig0023048:+22124 Msa1404190:exon
CAGAGAGAAATCGAAAGAGA+TGG 0.522927 tig0023048:+22111 Msa1404190:exon
AAGCGTTGGCACACTGTCAC+CGG 0.526005 tig0023048:+22190 Msa1404190:CDS
AGAGAGAAATCGAAAGAGAT+GGG 0.557927 tig0023048:+22112 Msa1404190:exon
GAGAGTGTTACCAATACTAC+AGG 0.564259 tig0023048:-22379 Msa1404190:intergenic
AAATCGAAAGAGATGGGTGG+AGG 0.575752 tig0023048:+22118 Msa1404190:exon
AAGGCTTGTGTGCTGTCATG+TGG 0.588655 tig0023048:+22215 Msa1404190:CDS
ATGGGTGGAGGACATGGACA+TGG 0.596898 tig0023048:+22130 Msa1404190:CDS
CAATTCATCAACCTAAGCGT+TGG 0.601027 tig0023048:+22176 Msa1404190:CDS
TCACCCTTCGTATTAACGCA+TGG 0.628945 tig0023048:-22057 Msa1404190:intergenic
TAAACTTCTCACAAGAAACA+TGG 0.636973 tig0023048:-24053 Msa1404190:intergenic
ATGGCCATGCGTTAATACGA+AGG 0.640570 tig0023048:+22053 Msa1404190:five_prime_UTR
TGGCCATGCGTTAATACGAA+GGG 0.642215 tig0023048:+22054 Msa1404190:five_prime_UTR
GAGAAATCGAAAGAGATGGG+TGG 0.645016 tig0023048:+22115 Msa1404190:exon
TCAGGAGCATCAGAACGTGA+AGG 0.665028 tig0023048:+23863 Msa1404190:CDS
CATGGCGGAACAACCTACAA+AGG 0.672410 tig0023048:+22148 Msa1404190:CDS
AGTTTGTGTCAACTACGACA+AGG 0.676732 tig0023048:+24089 Msa1404190:three_prime_UTR
GGTGGAGGACATGGACATGG+CGG 0.678018 tig0023048:+22133 Msa1404190:CDS
CGAAGGGTGAGATCTAGTGT+CGG 0.690985 tig0023048:+22070 Msa1404190:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTAATTGTTTTTCTT+AGG + tig0023048:22323-22342 Msa1404190:intron 10.0%
!!! TTAAATTAATTGTTTTTCTT+AGG + tig0023048:22323-22342 Msa1404190:intron 10.0%
!! CGAAATTGAAAATAAAATTA+GGG - tig0023048:22270-22289 Msa1404190:intergenic 15.0%
!! ACGAAATTGAAAATAAAATT+AGG - tig0023048:22271-22290 Msa1404190:intergenic 15.0%
!!! ATTTGTTTTCTTTTACATTT+AGG + tig0023048:22468-22487 Msa1404190:intron 15.0%
!!! TTTGTTTTCTTTTACATTTA+GGG + tig0023048:22469-22488 Msa1404190:intron 15.0%
!! ATTTGATATAATTGACATAT+CGG - tig0023048:22669-22688 Msa1404190:intergenic 15.0%
!!! AAATAATAGTATTAGTTCTT+GGG - tig0023048:23477-23496 Msa1404190:intergenic 15.0%
!!! TAAATAATAGTATTAGTTCT+TGG - tig0023048:23478-23497 Msa1404190:intergenic 15.0%
!! AATTCATTCATATTTAGTAA+AGG + tig0023048:23677-23696 Msa1404190:intron 15.0%
!! ATTAATTATTTCATTGTCTA+CGG - tig0023048:23764-23783 Msa1404190:intergenic 15.0%
!! CGAAATTGAAAATAAAATTA+GGG - tig0023048:22270-22289 Msa1404190:intergenic 15.0%
!! ACGAAATTGAAAATAAAATT+AGG - tig0023048:22271-22290 Msa1404190:intergenic 15.0%
!!! ATTTGTTTTCTTTTACATTT+AGG + tig0023048:22468-22487 Msa1404190:intron 15.0%
!!! TTTGTTTTCTTTTACATTTA+GGG + tig0023048:22469-22488 Msa1404190:intron 15.0%
!! ATTTGATATAATTGACATAT+CGG - tig0023048:22669-22688 Msa1404190:intergenic 15.0%
!!! AAATAATAGTATTAGTTCTT+GGG - tig0023048:23477-23496 Msa1404190:intergenic 15.0%
!!! TAAATAATAGTATTAGTTCT+TGG - tig0023048:23478-23497 Msa1404190:intergenic 15.0%
!! AATTCATTCATATTTAGTAA+AGG + tig0023048:23677-23696 Msa1404190:intron 15.0%
!! ATTAATTATTTCATTGTCTA+CGG - tig0023048:23764-23783 Msa1404190:intergenic 15.0%
!!! TAATTGTTTTTCTTAGGTTT+TGG + tig0023048:22329-22348 Msa1404190:intron 20.0%
!!! AATTGTTTTTCTTAGGTTTT+GGG + tig0023048:22330-22349 Msa1404190:intron 20.0%
!! ATACAATATTGACAAAAAAG+TGG + tig0023048:22709-22728 Msa1404190:intron 20.0%
!!! TAATTTTCAAAGTACATAGT+AGG - tig0023048:23385-23404 Msa1404190:intergenic 20.0%
!!! TACTATGTACTTTGAAAATT+AGG + tig0023048:23384-23403 Msa1404190:intron 20.0%
!! CTAAATATGAATGAATTAAC+AGG - tig0023048:23674-23693 Msa1404190:intergenic 20.0%
!!! TAACATATGTATTGATTTCT+TGG + tig0023048:23822-23841 Msa1404190:intron 20.0%
!!! TAATTGTTTTTCTTAGGTTT+TGG + tig0023048:22329-22348 Msa1404190:intron 20.0%
!!! AATTGTTTTTCTTAGGTTTT+GGG + tig0023048:22330-22349 Msa1404190:intron 20.0%
!! ATACAATATTGACAAAAAAG+TGG + tig0023048:22709-22728 Msa1404190:intron 20.0%
!!! TAATTTTCAAAGTACATAGT+AGG - tig0023048:23385-23404 Msa1404190:intergenic 20.0%
!!! TACTATGTACTTTGAAAATT+AGG + tig0023048:23384-23403 Msa1404190:intron 20.0%
!! CTAAATATGAATGAATTAAC+AGG - tig0023048:23674-23693 Msa1404190:intergenic 20.0%
!!! TAACATATGTATTGATTTCT+TGG + tig0023048:23822-23841 Msa1404190:intron 20.0%
! TAAGAAATGAAAAGAGAAAG+AGG - tig0023048:22247-22266 Msa1404190:intergenic 25.0%
!! ATTTTCTTAGGTATGATCAT+TGG + tig0023048:22540-22559 Msa1404190:intron 25.0%
! CAATTCACAATTAGGAAAAA+AGG - tig0023048:22589-22608 Msa1404190:intergenic 25.0%
! TACTCATTCAATTCACAATT+AGG - tig0023048:22597-22616 Msa1404190:intergenic 25.0%
! ATTATATCAAATGACATGTG+TGG + tig0023048:22677-22696 Msa1404190:intron 25.0%
! TTATATCAAATGACATGTGT+GGG + tig0023048:22678-22697 Msa1404190:intron 25.0%
! GTGATTCATTAGAATGAATT+GGG + tig0023048:22754-22773 Msa1404190:intron 25.0%
! TGTGTATCTATCTATCTATT+TGG - tig0023048:22800-22819 Msa1404190:intergenic 25.0%
!! CATATTGATTGAGTTCAATT+TGG + tig0023048:22829-22848 Msa1404190:intron 25.0%
! AACTCTGGTATTCAAATATT+TGG + tig0023048:23056-23075 Msa1404190:intron 25.0%
!! AGTAATTTGTGTATCATCAT+TGG + tig0023048:23131-23150 Msa1404190:intron 25.0%
!! TCTAAAAGTGTAGTAAAAGT+TGG + tig0023048:23191-23210 Msa1404190:intron 25.0%
! TGAAGAAAAAAAATCTCTAC+CGG - tig0023048:23245-23264 Msa1404190:intergenic 25.0%
!!! ATTTGTTGACCTTTTCTTAT+GGG + tig0023048:23407-23426 Msa1404190:intron 25.0%
!! CACTTTCTTCAATTTTCATA+TGG + tig0023048:23577-23596 Msa1404190:intron 25.0%
! TTTGACAATATTTGTAGAAG+TGG + tig0023048:23730-23749 Msa1404190:intron 25.0%
! TTGACAATATTTGTAGAAGT+GGG + tig0023048:23731-23750 Msa1404190:intron 25.0%
! TAAGAAATGAAAAGAGAAAG+AGG - tig0023048:22247-22266 Msa1404190:intergenic 25.0%
!! ATTTTCTTAGGTATGATCAT+TGG + tig0023048:22540-22559 Msa1404190:intron 25.0%
! CAATTCACAATTAGGAAAAA+AGG - tig0023048:22589-22608 Msa1404190:intergenic 25.0%
! TACTCATTCAATTCACAATT+AGG - tig0023048:22597-22616 Msa1404190:intergenic 25.0%
! ATTATATCAAATGACATGTG+TGG + tig0023048:22677-22696 Msa1404190:intron 25.0%
! TTATATCAAATGACATGTGT+GGG + tig0023048:22678-22697 Msa1404190:intron 25.0%
! GTGATTCATTAGAATGAATT+GGG + tig0023048:22754-22773 Msa1404190:intron 25.0%
! TGTGTATCTATCTATCTATT+TGG - tig0023048:22800-22819 Msa1404190:intergenic 25.0%
!! CATATTGATTGAGTTCAATT+TGG + tig0023048:22829-22848 Msa1404190:intron 25.0%
! AACTCTGGTATTCAAATATT+TGG + tig0023048:23056-23075 Msa1404190:intron 25.0%
!! AGTAATTTGTGTATCATCAT+TGG + tig0023048:23131-23150 Msa1404190:intron 25.0%
!! TCTAAAAGTGTAGTAAAAGT+TGG + tig0023048:23191-23210 Msa1404190:intron 25.0%
! TGAAGAAAAAAAATCTCTAC+CGG - tig0023048:23245-23264 Msa1404190:intergenic 25.0%
!!! ATTTGTTGACCTTTTCTTAT+GGG + tig0023048:23407-23426 Msa1404190:intron 25.0%
!! CACTTTCTTCAATTTTCATA+TGG + tig0023048:23577-23596 Msa1404190:intron 25.0%
! TTTGACAATATTTGTAGAAG+TGG + tig0023048:23730-23749 Msa1404190:intron 25.0%
! TTGACAATATTTGTAGAAGT+GGG + tig0023048:23731-23750 Msa1404190:intron 25.0%
!! TTTTCTTTTACATTTAGGGC+TGG + tig0023048:22473-22492 Msa1404190:intron 30.0%
! AGACGAGCATTAATTTTCTT+AGG + tig0023048:22528-22547 Msa1404190:intron 30.0%
GGTGATTCATTAGAATGAAT+TGG + tig0023048:22753-22772 Msa1404190:intron 30.0%
! TTTTATATGACAAAGTTCCC+AGG + tig0023048:22991-23010 Msa1404190:intron 30.0%
TTTATATGACAAAGTTCCCA+GGG + tig0023048:22992-23011 Msa1404190:intron 30.0%
!!! GATTTGTTGACCTTTTCTTA+TGG + tig0023048:23406-23425 Msa1404190:intron 30.0%
! GTATACCTTTTAATGAAGCA+AGG + tig0023048:23599-23618 Msa1404190:intron 30.0%
ATAGTCCTTGCTTCATTAAA+AGG - tig0023048:23607-23626 Msa1404190:intergenic 30.0%
TGCAACTGTGAAAATAAAGA+GGG - tig0023048:23643-23662 Msa1404190:intergenic 30.0%
TTGCAACTGTGAAAATAAAG+AGG - tig0023048:23644-23663 Msa1404190:intergenic 30.0%
AATATTTGTAGAAGTGGGAT+TGG + tig0023048:23736-23755 Msa1404190:intron 30.0%
ATATTTGTAGAAGTGGGATT+GGG + tig0023048:23737-23756 Msa1404190:intron 30.0%
!! ATATGTATTGATTTCTTGGC+AGG + tig0023048:23826-23845 Msa1404190:intron 30.0%
TTCATCCAAGTTAACAAGTA+AGG - tig0023048:24001-24020 Msa1404190:intergenic 30.0%
! TTAACTTGGATGAAGCTTTA+TGG + tig0023048:24007-24026 Msa1404190:three_prime_UTR 30.0%
TAAACTTCTCACAAGAAACA+TGG - tig0023048:24056-24075 Msa1404190:intergenic 30.0%
!! TTTTCTTTTACATTTAGGGC+TGG + tig0023048:22473-22492 Msa1404190:intron 30.0%
! AGACGAGCATTAATTTTCTT+AGG + tig0023048:22528-22547 Msa1404190:intron 30.0%
GGTGATTCATTAGAATGAAT+TGG + tig0023048:22753-22772 Msa1404190:intron 30.0%
! TTTTATATGACAAAGTTCCC+AGG + tig0023048:22991-23010 Msa1404190:intron 30.0%
TTTATATGACAAAGTTCCCA+GGG + tig0023048:22992-23011 Msa1404190:intron 30.0%
!!! GATTTGTTGACCTTTTCTTA+TGG + tig0023048:23406-23425 Msa1404190:intron 30.0%
! GTATACCTTTTAATGAAGCA+AGG + tig0023048:23599-23618 Msa1404190:intron 30.0%
ATAGTCCTTGCTTCATTAAA+AGG - tig0023048:23607-23626 Msa1404190:intergenic 30.0%
TGCAACTGTGAAAATAAAGA+GGG - tig0023048:23643-23662 Msa1404190:intergenic 30.0%
TTGCAACTGTGAAAATAAAG+AGG - tig0023048:23644-23663 Msa1404190:intergenic 30.0%
AATATTTGTAGAAGTGGGAT+TGG + tig0023048:23736-23755 Msa1404190:intron 30.0%
ATATTTGTAGAAGTGGGATT+GGG + tig0023048:23737-23756 Msa1404190:intron 30.0%
!! ATATGTATTGATTTCTTGGC+AGG + tig0023048:23826-23845 Msa1404190:intron 30.0%
TTCATCCAAGTTAACAAGTA+AGG - tig0023048:24001-24020 Msa1404190:intergenic 30.0%
! TTAACTTGGATGAAGCTTTA+TGG + tig0023048:24007-24026 Msa1404190:three_prime_UTR 30.0%
TAAACTTCTCACAAGAAACA+TGG - tig0023048:24056-24075 Msa1404190:intergenic 30.0%
AGAGAGAAATCGAAAGAGAT+GGG + tig0023048:22112-22131 Msa1404190:exon 35.0%
ATGAATTGTTACGCCTTTGT+AGG - tig0023048:22164-22183 Msa1404190:intergenic 35.0%
TGGTTTCCTACACTATGTTT+AGG + tig0023048:22729-22748 Msa1404190:intron 35.0%
TTTCCTACACTATGTTTAGG+TGG + tig0023048:22732-22751 Msa1404190:intron 35.0%
GATAGATAGATACACACTAG+AGG + tig0023048:22804-22823 Msa1404190:intron 35.0%
TTTATACACCCAATGCATCT+AGG + tig0023048:22918-22937 Msa1404190:intron 35.0%
TTATATGACAAAGTTCCCAG+GGG + tig0023048:22993-23012 Msa1404190:intron 35.0%
!! AAAGTTGGTATGTACATGTG+TGG + tig0023048:23206-23225 Msa1404190:intron 35.0%
GTGTGGTATTCATGATTTAC+CGG + tig0023048:23223-23242 Msa1404190:intron 35.0%
AGAGGTTAAATCAGGTTCAA+CGG - tig0023048:23356-23375 Msa1404190:intergenic 35.0%
AGACATACTCCCATAAGAAA+AGG - tig0023048:23419-23438 Msa1404190:intergenic 35.0%
AAGTACGATTTATCACCAAC+AGG + tig0023048:23497-23516 Msa1404190:intron 35.0%
AGAAGTTTAGTATGACCTGT+TGG - tig0023048:23515-23534 Msa1404190:intergenic 35.0%
TATTTGTAGAAGTGGGATTG+GGG + tig0023048:23738-23757 Msa1404190:intron 35.0%
CTCAAACATAGCTATGTTCA+TGG - tig0023048:23976-23995 Msa1404190:intergenic 35.0%
AGAGAGAAATCGAAAGAGAT+GGG + tig0023048:22112-22131 Msa1404190:exon 35.0%
ATGAATTGTTACGCCTTTGT+AGG - tig0023048:22164-22183 Msa1404190:intergenic 35.0%
TGGTTTCCTACACTATGTTT+AGG + tig0023048:22729-22748 Msa1404190:intron 35.0%
TTTCCTACACTATGTTTAGG+TGG + tig0023048:22732-22751 Msa1404190:intron 35.0%
GATAGATAGATACACACTAG+AGG + tig0023048:22804-22823 Msa1404190:intron 35.0%
TTTATACACCCAATGCATCT+AGG + tig0023048:22918-22937 Msa1404190:intron 35.0%
TTATATGACAAAGTTCCCAG+GGG + tig0023048:22993-23012 Msa1404190:intron 35.0%
!! AAAGTTGGTATGTACATGTG+TGG + tig0023048:23206-23225 Msa1404190:intron 35.0%
GTGTGGTATTCATGATTTAC+CGG + tig0023048:23223-23242 Msa1404190:intron 35.0%
AGAGGTTAAATCAGGTTCAA+CGG - tig0023048:23356-23375 Msa1404190:intergenic 35.0%
AGACATACTCCCATAAGAAA+AGG - tig0023048:23419-23438 Msa1404190:intergenic 35.0%
AAGTACGATTTATCACCAAC+AGG + tig0023048:23497-23516 Msa1404190:intron 35.0%
AGAAGTTTAGTATGACCTGT+TGG - tig0023048:23515-23534 Msa1404190:intergenic 35.0%
TATTTGTAGAAGTGGGATTG+GGG + tig0023048:23738-23757 Msa1404190:intron 35.0%
CTCAAACATAGCTATGTTCA+TGG - tig0023048:23976-23995 Msa1404190:intergenic 35.0%
CAGAGAGAAATCGAAAGAGA+TGG + tig0023048:22111-22130 Msa1404190:exon 40.0%
CAATTCATCAACCTAAGCGT+TGG + tig0023048:22176-22195 Msa1404190:CDS 40.0%
!! GAGAGTGTTACCAATACTAC+AGG - tig0023048:22382-22401 Msa1404190:intergenic 40.0%
!! TCTTTTACATTTAGGGCTGG+AGG + tig0023048:22476-22495 Msa1404190:intron 40.0%
! CAAATGACATGTGTGGGTTA+TGG + tig0023048:22684-22703 Msa1404190:intron 40.0%
TCACCACCTAAACATAGTGT+AGG - tig0023048:22738-22757 Msa1404190:intergenic 40.0%
CCTGTGACGTTTCAAAATCT+GGG + tig0023048:22965-22984 Msa1404190:intron 40.0%
GGGACAAATAAGTGTAACTC+TGG + tig0023048:23041-23060 Msa1404190:intron 40.0%
ACATCATGTGGAACTATCAG+GGG - tig0023048:23319-23338 Msa1404190:intergenic 40.0%
GACATCATGTGGAACTATCA+GGG - tig0023048:23320-23339 Msa1404190:intergenic 40.0%
! GAGCACCTTACTTGTTAACT+TGG + tig0023048:23993-24012 Msa1404190:three_prime_UTR 40.0%
AGTTTGTGTCAACTACGACA+AGG + tig0023048:24089-24108 Msa1404190:three_prime_UTR 40.0%
CAGAGAGAAATCGAAAGAGA+TGG + tig0023048:22111-22130 Msa1404190:exon 40.0%
CAATTCATCAACCTAAGCGT+TGG + tig0023048:22176-22195 Msa1404190:CDS 40.0%
!! GAGAGTGTTACCAATACTAC+AGG - tig0023048:22382-22401 Msa1404190:intergenic 40.0%
!! TCTTTTACATTTAGGGCTGG+AGG + tig0023048:22476-22495 Msa1404190:intron 40.0%
! CAAATGACATGTGTGGGTTA+TGG + tig0023048:22684-22703 Msa1404190:intron 40.0%
TCACCACCTAAACATAGTGT+AGG - tig0023048:22738-22757 Msa1404190:intergenic 40.0%
CCTGTGACGTTTCAAAATCT+GGG + tig0023048:22965-22984 Msa1404190:intron 40.0%
GGGACAAATAAGTGTAACTC+TGG + tig0023048:23041-23060 Msa1404190:intron 40.0%
ACATCATGTGGAACTATCAG+GGG - tig0023048:23319-23338 Msa1404190:intergenic 40.0%
GACATCATGTGGAACTATCA+GGG - tig0023048:23320-23339 Msa1404190:intergenic 40.0%
! GAGCACCTTACTTGTTAACT+TGG + tig0023048:23993-24012 Msa1404190:three_prime_UTR 40.0%
AGTTTGTGTCAACTACGACA+AGG + tig0023048:24089-24108 Msa1404190:three_prime_UTR 40.0%
ATGGCCATGCGTTAATACGA+AGG + tig0023048:22053-22072 Msa1404190:five_prime_UTR 45.0%
TGGCCATGCGTTAATACGAA+GGG + tig0023048:22054-22073 Msa1404190:five_prime_UTR 45.0%
TCACCCTTCGTATTAACGCA+TGG - tig0023048:22060-22079 Msa1404190:intergenic 45.0%
CTCTCTGACTCAAATGCTTC+TGG - tig0023048:22098-22117 Msa1404190:intergenic 45.0%
GAGAAATCGAAAGAGATGGG+TGG + tig0023048:22115-22134 Msa1404190:exon 45.0%
AAATCGAAAGAGATGGGTGG+AGG + tig0023048:22118-22137 Msa1404190:exon 45.0%
GCAAGATGCTCCTGTAGTAT+TGG + tig0023048:22369-22388 Msa1404190:CDS 45.0%
CTCCTAGTCCTAGATGCATT+GGG - tig0023048:22929-22948 Msa1404190:intergenic 45.0%
! CAATGCATCTAGGACTAGGA+GGG + tig0023048:22928-22947 Msa1404190:intron 45.0%
GCCTGTGACGTTTCAAAATC+TGG + tig0023048:22964-22983 Msa1404190:intron 45.0%
!!! CCCAGATTTTGAAACGTCAC+AGG - tig0023048:22968-22987 Msa1404190:intergenic 45.0%
TGGACACTGGATGGAATAGT+GGG + tig0023048:23016-23035 Msa1404190:intron 45.0%
GGACATCATGTGGAACTATC+AGG - tig0023048:23321-23340 Msa1404190:intergenic 45.0%
AGGTTCAACGGAAGAAGATC+GGG - tig0023048:23344-23363 Msa1404190:intergenic 45.0%
CAGGTTCAACGGAAGAAGAT+CGG - tig0023048:23345-23364 Msa1404190:intergenic 45.0%
GGCTTAGCAGAGGTTAAATC+AGG - tig0023048:23364-23383 Msa1404190:intergenic 45.0%
GTACATAGTAGGCTTAGCAG+AGG - tig0023048:23374-23393 Msa1404190:intergenic 45.0%
ATGGCCATGCGTTAATACGA+AGG + tig0023048:22053-22072 Msa1404190:five_prime_UTR 45.0%
TGGCCATGCGTTAATACGAA+GGG + tig0023048:22054-22073 Msa1404190:five_prime_UTR 45.0%
TCACCCTTCGTATTAACGCA+TGG - tig0023048:22060-22079 Msa1404190:intergenic 45.0%
CTCTCTGACTCAAATGCTTC+TGG - tig0023048:22098-22117 Msa1404190:intergenic 45.0%
GAGAAATCGAAAGAGATGGG+TGG + tig0023048:22115-22134 Msa1404190:exon 45.0%
AAATCGAAAGAGATGGGTGG+AGG + tig0023048:22118-22137 Msa1404190:exon 45.0%
GCAAGATGCTCCTGTAGTAT+TGG + tig0023048:22369-22388 Msa1404190:CDS 45.0%
CTCCTAGTCCTAGATGCATT+GGG - tig0023048:22929-22948 Msa1404190:intergenic 45.0%
! CAATGCATCTAGGACTAGGA+GGG + tig0023048:22928-22947 Msa1404190:intron 45.0%
GCCTGTGACGTTTCAAAATC+TGG + tig0023048:22964-22983 Msa1404190:intron 45.0%
!!! CCCAGATTTTGAAACGTCAC+AGG - tig0023048:22968-22987 Msa1404190:intergenic 45.0%
TGGACACTGGATGGAATAGT+GGG + tig0023048:23016-23035 Msa1404190:intron 45.0%
GGACATCATGTGGAACTATC+AGG - tig0023048:23321-23340 Msa1404190:intergenic 45.0%
AGGTTCAACGGAAGAAGATC+GGG - tig0023048:23344-23363 Msa1404190:intergenic 45.0%
CAGGTTCAACGGAAGAAGAT+CGG - tig0023048:23345-23364 Msa1404190:intergenic 45.0%
GGCTTAGCAGAGGTTAAATC+AGG - tig0023048:23364-23383 Msa1404190:intergenic 45.0%
GTACATAGTAGGCTTAGCAG+AGG - tig0023048:23374-23393 Msa1404190:intergenic 45.0%
CGAAGGGTGAGATCTAGTGT+CGG + tig0023048:22070-22089 Msa1404190:five_prime_UTR 50.0%
AAAGAGATGGGTGGAGGACA+TGG + tig0023048:22124-22143 Msa1404190:exon 50.0%
! CATGGCGGAACAACCTACAA+AGG + tig0023048:22148-22167 Msa1404190:CDS 50.0%
AAGGCTTGTGTGCTGTCATG+TGG + tig0023048:22215-22234 Msa1404190:CDS 50.0%
! CACCCAATGCATCTAGGACT+AGG + tig0023048:22924-22943 Msa1404190:intron 50.0%
CCTCCTAGTCCTAGATGCAT+TGG - tig0023048:22930-22949 Msa1404190:intergenic 50.0%
! CCAATGCATCTAGGACTAGG+AGG + tig0023048:22927-22946 Msa1404190:intron 50.0%
! CATCTAGGACTAGGAGGGTT+TGG + tig0023048:22933-22952 Msa1404190:intron 50.0%
TATGACAAAGTTCCCAGGGG+TGG + tig0023048:22996-23015 Msa1404190:intron 50.0%
GTGGACACTGGATGGAATAG+TGG + tig0023048:23015-23034 Msa1404190:intron 50.0%
! ACACTGGATGGAATAGTGGG+AGG + tig0023048:23019-23038 Msa1404190:intron 50.0%
! CACTGGATGGAATAGTGGGA+GGG + tig0023048:23020-23039 Msa1404190:intron 50.0%
! ACTGGATGGAATAGTGGGAG+GGG + tig0023048:23021-23040 Msa1404190:intron 50.0%
TCATGTGGAACTATCAGGGG+TGG - tig0023048:23316-23335 Msa1404190:intergenic 50.0%
GTTCAACGGAAGAAGATCGG+GGG - tig0023048:23342-23361 Msa1404190:intergenic 50.0%
GGTTCAACGGAAGAAGATCG+GGG - tig0023048:23343-23362 Msa1404190:intergenic 50.0%
CAGGCTTCAGCTGCAAAATC+AGG + tig0023048:23845-23864 Msa1404190:intron 50.0%
!! TCAGGAGCATCAGAACGTGA+AGG + tig0023048:23863-23882 Msa1404190:CDS 50.0%
CGAAGGGTGAGATCTAGTGT+CGG + tig0023048:22070-22089 Msa1404190:five_prime_UTR 50.0%
AAAGAGATGGGTGGAGGACA+TGG + tig0023048:22124-22143 Msa1404190:exon 50.0%
! CATGGCGGAACAACCTACAA+AGG + tig0023048:22148-22167 Msa1404190:CDS 50.0%
AAGGCTTGTGTGCTGTCATG+TGG + tig0023048:22215-22234 Msa1404190:CDS 50.0%
! CACCCAATGCATCTAGGACT+AGG + tig0023048:22924-22943 Msa1404190:intron 50.0%
CCTCCTAGTCCTAGATGCAT+TGG - tig0023048:22930-22949 Msa1404190:intergenic 50.0%
! CCAATGCATCTAGGACTAGG+AGG + tig0023048:22927-22946 Msa1404190:intron 50.0%
! CATCTAGGACTAGGAGGGTT+TGG + tig0023048:22933-22952 Msa1404190:intron 50.0%
TATGACAAAGTTCCCAGGGG+TGG + tig0023048:22996-23015 Msa1404190:intron 50.0%
GTGGACACTGGATGGAATAG+TGG + tig0023048:23015-23034 Msa1404190:intron 50.0%
! ACACTGGATGGAATAGTGGG+AGG + tig0023048:23019-23038 Msa1404190:intron 50.0%
! CACTGGATGGAATAGTGGGA+GGG + tig0023048:23020-23039 Msa1404190:intron 50.0%
! ACTGGATGGAATAGTGGGAG+GGG + tig0023048:23021-23040 Msa1404190:intron 50.0%
TCATGTGGAACTATCAGGGG+TGG - tig0023048:23316-23335 Msa1404190:intergenic 50.0%
GTTCAACGGAAGAAGATCGG+GGG - tig0023048:23342-23361 Msa1404190:intergenic 50.0%
GGTTCAACGGAAGAAGATCG+GGG - tig0023048:23343-23362 Msa1404190:intergenic 50.0%
CAGGCTTCAGCTGCAAAATC+AGG + tig0023048:23845-23864 Msa1404190:intron 50.0%
!! TCAGGAGCATCAGAACGTGA+AGG + tig0023048:23863-23882 Msa1404190:CDS 50.0%
ATGGGTGGAGGACATGGACA+TGG + tig0023048:22130-22149 Msa1404190:CDS 55.0%
GTGACAGTGTGCCAACGCTT+AGG - tig0023048:22190-22209 Msa1404190:intergenic 55.0%
!! AAGCGTTGGCACACTGTCAC+CGG + tig0023048:22190-22209 Msa1404190:CDS 55.0%
GACAGCACACAAGCCTTTGC+CGG - tig0023048:22212-22231 Msa1404190:intergenic 55.0%
!! TTTAGGGCTGGAGGCATCCT+TGG + tig0023048:22485-22504 Msa1404190:intron 55.0%
!! TTAGGGCTGGAGGCATCCTT+GGG + tig0023048:22486-22505 Msa1404190:intron 55.0%
TGATCACCATGACCCTCCCA+AGG - tig0023048:22505-22524 Msa1404190:intergenic 55.0%
TGGGAGGGTCATGGTGATCA+TGG + tig0023048:22505-22524 Msa1404190:intron 55.0%
! TCCTAGGTGTGGCTCTATGG+TGG - tig0023048:23285-23304 Msa1404190:intergenic 55.0%
ACCATAGAGCCACACCTAGG+AGG + tig0023048:23284-23303 Msa1404190:intron 55.0%
GAAGATCGGGGGACATCATG+TGG - tig0023048:23331-23350 Msa1404190:intergenic 55.0%
ATGGGTGGAGGACATGGACA+TGG + tig0023048:22130-22149 Msa1404190:CDS 55.0%
GTGACAGTGTGCCAACGCTT+AGG - tig0023048:22190-22209 Msa1404190:intergenic 55.0%
!! AAGCGTTGGCACACTGTCAC+CGG + tig0023048:22190-22209 Msa1404190:CDS 55.0%
GACAGCACACAAGCCTTTGC+CGG - tig0023048:22212-22231 Msa1404190:intergenic 55.0%
!! TTTAGGGCTGGAGGCATCCT+TGG + tig0023048:22485-22504 Msa1404190:intron 55.0%
!! TTAGGGCTGGAGGCATCCTT+GGG + tig0023048:22486-22505 Msa1404190:intron 55.0%
TGATCACCATGACCCTCCCA+AGG - tig0023048:22505-22524 Msa1404190:intergenic 55.0%
TGGGAGGGTCATGGTGATCA+TGG + tig0023048:22505-22524 Msa1404190:intron 55.0%
! TCCTAGGTGTGGCTCTATGG+TGG - tig0023048:23285-23304 Msa1404190:intergenic 55.0%
ACCATAGAGCCACACCTAGG+AGG + tig0023048:23284-23303 Msa1404190:intron 55.0%
GAAGATCGGGGGACATCATG+TGG - tig0023048:23331-23350 Msa1404190:intergenic 55.0%
GGTGGAGGACATGGACATGG+CGG + tig0023048:22133-22152 Msa1404190:CDS 60.0%
TGGCACACTGTCACCGGCAA+AGG + tig0023048:22196-22215 Msa1404190:CDS 60.0%
AGGCATCCTTGGGAGGGTCA+TGG + tig0023048:22496-22515 Msa1404190:intron 60.0%
AAGTTCCCAGGGGTGGACAC+TGG + tig0023048:23003-23022 Msa1404190:intron 60.0%
TCCATCCAGTGTCCACCCCT+GGG - tig0023048:23011-23030 Msa1404190:intergenic 60.0%
TTCCATCCAGTGTCCACCCC+TGG - tig0023048:23012-23031 Msa1404190:intergenic 60.0%
GCCACCATAGAGCCACACCT+AGG + tig0023048:23281-23300 Msa1404190:intron 60.0%
! GCCTCCTAGGTGTGGCTCTA+TGG - tig0023048:23288-23307 Msa1404190:intergenic 60.0%
AGAGCCACACCTAGGAGGCT+AGG + tig0023048:23289-23308 Msa1404190:intron 60.0%
TGGACCTAGCCTCCTAGGTG+TGG - tig0023048:23296-23315 Msa1404190:intergenic 60.0%
GGTGGAGGACATGGACATGG+CGG + tig0023048:22133-22152 Msa1404190:CDS 60.0%
TGGCACACTGTCACCGGCAA+AGG + tig0023048:22196-22215 Msa1404190:CDS 60.0%
AGGCATCCTTGGGAGGGTCA+TGG + tig0023048:22496-22515 Msa1404190:intron 60.0%
AAGTTCCCAGGGGTGGACAC+TGG + tig0023048:23003-23022 Msa1404190:intron 60.0%
TCCATCCAGTGTCCACCCCT+GGG - tig0023048:23011-23030 Msa1404190:intergenic 60.0%
TTCCATCCAGTGTCCACCCC+TGG - tig0023048:23012-23031 Msa1404190:intergenic 60.0%
GCCACCATAGAGCCACACCT+AGG + tig0023048:23281-23300 Msa1404190:intron 60.0%
! GCCTCCTAGGTGTGGCTCTA+TGG - tig0023048:23288-23307 Msa1404190:intergenic 60.0%
AGAGCCACACCTAGGAGGCT+AGG + tig0023048:23289-23308 Msa1404190:intron 60.0%
TGGACCTAGCCTCCTAGGTG+TGG - tig0023048:23296-23315 Msa1404190:intergenic 60.0%
!! GGCTGGAGGCATCCTTGGGA+GGG + tig0023048:22490-22509 Msa1404190:intron 65.0%
TCCCAGGGGTGGACACTGGA+TGG + tig0023048:23007-23026 Msa1404190:intron 65.0%
AGGGGTGGACCTAGCCTCCT+AGG - tig0023048:23301-23320 Msa1404190:intergenic 65.0%
!! GGCTGGAGGCATCCTTGGGA+GGG + tig0023048:22490-22509 Msa1404190:intron 65.0%
TCCCAGGGGTGGACACTGGA+TGG + tig0023048:23007-23026 Msa1404190:intron 65.0%
AGGGGTGGACCTAGCCTCCT+AGG - tig0023048:23301-23320 Msa1404190:intergenic 65.0%
!! GGGCTGGAGGCATCCTTGGG+AGG + tig0023048:22489-22508 Msa1404190:intron 70.0%
!! GGGCTGGAGGCATCCTTGGG+AGG + tig0023048:22489-22508 Msa1404190:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023048 gene 22053 24152 22053 ID=Msa1404190;Name=Msa1404190
tig0023048 mRNA 22053 24152 22053 ID=Msa1404190-mRNA-1;Parent=Msa1404190;Name=Msa1404190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|0.5|1|1|1|1|3|215|80
tig0023048 exon 22053 22236 22053 ID=Msa1404190-mRNA-1:exon:19660;Parent=Msa1404190-mRNA-1
tig0023048 exon 22345 22390 22345 ID=Msa1404190-mRNA-1:exon:19661;Parent=Msa1404190-mRNA-1
tig0023048 exon 23848 24152 23848 ID=Msa1404190-mRNA-1:exon:19662;Parent=Msa1404190-mRNA-1
tig0023048 five_prime_UTR 22053 22129 22053 ID=Msa1404190-mRNA-1:five_prime_utr;Parent=Msa1404190-mRNA-1
tig0023048 CDS 22130 22236 22130 ID=Msa1404190-mRNA-1:cds;Parent=Msa1404190-mRNA-1
tig0023048 CDS 22345 22390 22345 ID=Msa1404190-mRNA-1:cds;Parent=Msa1404190-mRNA-1
tig0023048 CDS 23848 23937 23848 ID=Msa1404190-mRNA-1:cds;Parent=Msa1404190-mRNA-1
tig0023048 three_prime_UTR 23938 24152 23938 ID=Msa1404190-mRNA-1:three_prime_utr;Parent=Msa1404190-mRNA-1
Gene Sequence

>Msa1404190

ATGGGTGGAGGACATGGACATGGCGGAACAACCTACAAAGGCGTAACAATTCATCAACCTAAGCGTTGGCACACTGTCACCGGCAAAGGCTTGTGTGCTGTCATGTGGTTTTGGGTCATGTACAGAGCAAAGCAAGATGCTCCTGTAGTATTGGCTTCAGCTGCAAAATCAGGAGCATCAGAACGTGAAGGATCTGTGTTCATGAATGTGTTAATCAAATGTTTACTTTGTTTCATTCAATAA

Protein sequence

>Msa1404190

MGGGHGHGGTTYKGVTIHQPKRWHTVTGKGLCAVMWFWVMYRAKQDAPVVLASAAKSGASEREGSVFMNVLIKCLLCFIQ*