AlfalfaGEDB | Msa1404190

M. sativa cultivar zhongmu-4 / Msa1404190

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404190	PNY12532.1	96.078	51	2	0	2	52	4	54	6.40e-27	103

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404190	sp\|Q8LDK3\|NDUB2_ARATH	82.927	41	7	0	11	51	11	51	3.02e-20	79.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404190	A0A2K3PB64	96.078	51	2	0	2	52	4	54	3.06e-27	103

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1404190	0.812289	4.568736e-51	-8.615850e-47
Msa0002380	Msa1404190	0.816421	5.578608e-52	-8.615850e-47
Msa0002490	Msa1404190	0.836554	8.742178e-57	-8.615850e-47
Msa0002540	Msa1404190	0.836419	9.461215e-57	-8.615850e-47
Msa0004540	Msa1404190	0.808761	2.642361e-50	-8.615850e-47
Msa0004860	Msa1404190	0.815271	1.007016e-51	-8.615850e-47
Msa0004950	Msa1404190	0.830227	3.306460e-55	-8.615850e-47
Msa0004980	Msa1404190	0.852781	3.685698e-61	-8.615850e-47
Msa0006290	Msa1404190	0.809739	1.630315e-50	-8.615850e-47
Msa0006880	Msa1404190	0.841756	3.918081e-58	-8.615850e-47

Showing 1 to 10 of 762 entries

Previous1 2 3 4 5…77Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404190	MtrunA17_Chr4g0038321	96.078	51	2	0	2	52	4	54	5.95e-31	103

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404190	AT1G76200.1	82.927	41	7	0	11	51	11	51	3.07e-21	79.3

Showing 1 to 1 of 1 entries

Previous1Next

Find 30 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGATGGGTGGAGGACA+TGG	0.512507	tig0023048:+22124	Msa1404190:exon
AAATCGAAAGAGATGGGTGG+AGG	0.575752	tig0023048:+22118	Msa1404190:exon
AAGCGTTGGCACACTGTCAC+CGG	0.526005	tig0023048:+22190	Msa1404190:CDS
AAGGCTTGTGTGCTGTCATG+TGG	0.588655	tig0023048:+22215	Msa1404190:CDS
AGAGAGAAATCGAAAGAGAT+GGG	0.557927	tig0023048:+22112	Msa1404190:exon
AGTTTGTGTCAACTACGACA+AGG	0.676732	tig0023048:+24089	Msa1404190:three_prime_UTR
ATGAATTGTTACGCCTTTGT+AGG	0.404079	tig0023048:-22161	Msa1404190:intergenic
ATGGCCATGCGTTAATACGA+AGG	0.640570	tig0023048:+22053	Msa1404190:five_prime_UTR
ATGGGTGGAGGACATGGACA+TGG	0.596898	tig0023048:+22130	Msa1404190:CDS
CAATTCATCAACCTAAGCGT+TGG	0.601027	tig0023048:+22176	Msa1404190:CDS

Showing 1 to 10 of 30 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGTGATTCATTAGAATGAAT+TGG	+	tig0023048:22753-22772	Msa1404190:intron	30.0%
TTTATATGACAAAGTTCCCA+GGG	+	tig0023048:22992-23011	Msa1404190:intron	30.0%
ATAGTCCTTGCTTCATTAAA+AGG	-	tig0023048:23607-23626	Msa1404190:intergenic	30.0%
TGCAACTGTGAAAATAAAGA+GGG	-	tig0023048:23643-23662	Msa1404190:intergenic	30.0%
TTGCAACTGTGAAAATAAAG+AGG	-	tig0023048:23644-23663	Msa1404190:intergenic	30.0%
AATATTTGTAGAAGTGGGAT+TGG	+	tig0023048:23736-23755	Msa1404190:intron	30.0%
ATATTTGTAGAAGTGGGATT+GGG	+	tig0023048:23737-23756	Msa1404190:intron	30.0%
TTCATCCAAGTTAACAAGTA+AGG	-	tig0023048:24001-24020	Msa1404190:intergenic	30.0%
TAAACTTCTCACAAGAAACA+TGG	-	tig0023048:24056-24075	Msa1404190:intergenic	30.0%
GGTGATTCATTAGAATGAAT+TGG	+	tig0023048:22753-22772	Msa1404190:intron	30.0%

Showing 1 to 10 of 274 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
tig0023048	gene	22053	24152	22053	ID=Msa1404190;Name=Msa1404190
tig0023048	mRNA	22053	24152	22053	ID=Msa1404190-mRNA-1;Parent=Msa1404190;Name=Msa1404190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77\|0.5\|1\|1\|1\|1\|3\|215\|80
tig0023048	exon	22053	22236	22053	ID=Msa1404190-mRNA-1:exon:19660;Parent=Msa1404190-mRNA-1
tig0023048	exon	22345	22390	22345	ID=Msa1404190-mRNA-1:exon:19661;Parent=Msa1404190-mRNA-1
tig0023048	exon	23848	24152	23848	ID=Msa1404190-mRNA-1:exon:19662;Parent=Msa1404190-mRNA-1
tig0023048	five_prime_UTR	22053	22129	22053	ID=Msa1404190-mRNA-1:five_prime_utr;Parent=Msa1404190-mRNA-1
tig0023048	CDS	22130	22236	22130	ID=Msa1404190-mRNA-1:cds;Parent=Msa1404190-mRNA-1
tig0023048	CDS	22345	22390	22345	ID=Msa1404190-mRNA-1:cds;Parent=Msa1404190-mRNA-1
tig0023048	CDS	23848	23937	23848	ID=Msa1404190-mRNA-1:cds;Parent=Msa1404190-mRNA-1
tig0023048	three_prime_UTR	23938	24152	23938	ID=Msa1404190-mRNA-1:three_prime_utr;Parent=Msa1404190-mRNA-1

Gene Sequence	>Msa1404190 ATGGGTGGAGGACATGGACATGGCGGAACAACCTACAAAGGCGTAACAATTCATCAACCTAAGCGTTGGCACACTGTCACCGGCAAAGGCTTGTGTGCTGTCATGTGGTTTTGGGTCATGTACAGAGCAAAGCAAGATGCTCCTGTAGTATTGGCTTCAGCTGCAAAATCAGGAGCATCAGAACGTGAAGGATCTGTGTTCATGAATGTGTTAATCAAATGTTTACTTTGTTTCATTCAATAA
Protein sequence	>Msa1404190 MGGGHGHGGTTYKGVTIHQPKRWHTVTGKGLCAVMWFWVMYRAKQDAPVVLASAAKSGASEREGSVFMNVLIKCLLCFIQ*