AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162480 MtrunA17_Chr7g0258441 98.113 159 3 0 1 159 1 159 1.17e-111 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162480 AT2G42210.2 67.532 154 50 0 1 154 15 168 7.85e-71 211
Msa1162480 AT2G42210.1 67.532 154 50 0 1 154 1 154 8.21e-71 211
Msa1162480 AT2G42210.3 67.532 154 50 0 1 154 1 154 8.21e-71 211
Msa1162480 AT2G42210.4 67.532 154 50 0 1 154 1 154 8.21e-71 211
Msa1162480 AT2G42210.5 67.532 154 50 0 1 154 1 154 8.21e-71 211

Find 67 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATCATCGTACATTTAT+TGG 0.126510 7_4:+53181833 None:intergenic
GTTTAGTTGCTGGCACTATC+TGG 0.151026 7_4:-53184239 Msa1162480:CDS
TTCCCTTCATCATGTTTAAA+AGG 0.206706 7_4:+53182056 None:intergenic
TATGATATCTGAAGTCTTAA+AGG 0.215200 7_4:-53181658 Msa1162480:three_prime_UTR
CGAGAGAAGTGTTGCTCTTC+CGG 0.237509 7_4:-53184178 Msa1162480:CDS
TGTACGATGATGTGTTAATT+TGG 0.268176 7_4:-53181825 Msa1162480:three_prime_UTR
CAATGAACTTGAAATGTCTT+TGG 0.277207 7_4:+53181960 None:intergenic
CAAAGACATTTCAAGTTCAT+TGG 0.286400 7_4:-53181959 Msa1162480:three_prime_UTR
ACAGCTTACAAAAGAAAATA+TGG 0.309843 7_4:+53181877 None:intergenic
TGAAATGTCTTTGGTCATAA+AGG 0.311002 7_4:+53181969 None:intergenic
GAGAGAAGTGTTGCTCTTCC+GGG 0.333701 7_4:-53184177 Msa1162480:CDS
GTTGCTGGTGCAACTATTCT+TGG 0.345412 7_4:-53184015 Msa1162480:CDS
GCTGTTGGTGGATTTGTTGC+TGG 0.348409 7_4:-53184030 Msa1162480:CDS
TGTGGAGGCCGCTCAGAGTT+TGG 0.362168 7_4:-53185003 Msa1162480:five_prime_UTR
GCAACAACTGGTTTAGTTGC+TGG 0.371072 7_4:-53184249 Msa1162480:CDS
TTTAGTTGCTGGCACTATCT+GGG 0.403267 7_4:-53184238 Msa1162480:CDS
ATGAAGAGGGATCTTGTAAA+TGG 0.414469 7_4:-53184054 Msa1162480:CDS
TTGGTTTGCAGAGATTATAA+TGG 0.415470 7_4:-53184334 Msa1162480:intron
AGTCTACATAGGGGTGGAAC+AGG 0.418652 7_4:-53184094 Msa1162480:CDS
GTAGTATTATGTAAAGGTTA+TGG 0.453349 7_4:+53181792 None:intergenic
ATTCCAACTCAACAAACAAC+TGG 0.454172 7_4:+53181911 None:intergenic
TGTGAAAGCCAATGCTGATC+CGG 0.457987 7_4:+53182106 None:intergenic
GAAGCTGGCGCAGTAGAACT+AGG 0.462544 7_4:-53181725 Msa1162480:three_prime_UTR
CTTGTAAATGGTGCTGTTGG+TGG 0.465052 7_4:-53184042 Msa1162480:CDS
GAGCCAGTTGTTTGTTGAGT+TGG 0.465517 7_4:-53181914 Msa1162480:three_prime_UTR
ATCTCAACTGCAATTTCTGC+CGG 0.488258 7_4:-53182125 Msa1162480:CDS
GATTAGAACTTTGAAGATGA+TGG 0.494059 7_4:-53184151 Msa1162480:CDS
AATTTCTGCCGGATCAGCAT+TGG 0.497080 7_4:-53182114 Msa1162480:CDS
GACTCCTCCTATGGCGGCAA+AGG 0.503480 7_4:+53184113 None:intergenic
TTTGTAAGCAAGAGTAGTAT+CGG 0.505455 7_4:-53185049 Msa1162480:five_prime_UTR
TACTAGTCAACATTCTTCCA+TGG 0.506310 7_4:-53181772 Msa1162480:three_prime_UTR
AACAGGTGGTGCAGAACTAC+AGG 0.509492 7_4:-53184077 Msa1162480:CDS
TTGAAGATGATGGGTGGCTA+TGG 0.511278 7_4:-53184141 Msa1162480:CDS
TTCATCATGTTTAAAAGGCG+TGG 0.528434 7_4:+53182061 None:intergenic
GGAGCGACCTTTGCCGCCAT+AGG 0.530743 7_4:-53184120 Msa1162480:CDS
ATGAATACTATACATGAAGC+TGG 0.538495 7_4:-53181740 Msa1162480:three_prime_UTR
ACGTAGGTACTTCGAGGATG+AGG 0.541797 7_4:-53184301 Msa1162480:CDS
TGACTAGTAGTATTATGTAA+AGG 0.543217 7_4:+53181786 None:intergenic
GCGACCTTTGCCGCCATAGG+AGG 0.543885 7_4:-53184117 Msa1162480:CDS
TTAGTTGCTGGCACTATCTG+GGG 0.550686 7_4:-53184237 Msa1162480:CDS
CCATAGGAGGAGTCTACATA+GGG 0.550718 7_4:-53184104 Msa1162480:CDS
CCCTATGTAGACTCCTCCTA+TGG 0.554940 7_4:+53184104 None:intergenic
GGGGTACTGTAGTTGCCACC+TGG 0.555518 7_4:-53184218 Msa1162480:CDS
TTTGTTGAGTTGGAATTACA+TGG 0.555647 7_4:-53181904 Msa1162480:three_prime_UTR
GATCTTGTAAATGGTGCTGT+TGG 0.564385 7_4:-53184045 Msa1162480:CDS
ATTAGAACTTTGAAGATGAT+GGG 0.565356 7_4:-53184150 Msa1162480:CDS
TTCAAAGTTCTAATCAGCCC+CGG 0.577416 7_4:+53184159 None:intergenic
AGCAGAACGTAGGTACTTCG+AGG 0.590571 7_4:-53184307 Msa1162480:CDS
AGAGAAGTGTTGCTCTTCCG+GGG 0.596304 7_4:-53184176 Msa1162480:CDS
ACTAGTCAACATTCTTCCAT+GGG 0.596601 7_4:-53181771 Msa1162480:three_prime_UTR
GTATTCATCAATTCATCCCA+TGG 0.596875 7_4:+53181755 None:intergenic
CAGAAGAATTCTGCGAAGTG+TGG 0.606590 7_4:-53185021 Msa1162480:five_prime_UTR
TGCAGAACTACAGGATGAAG+AGG 0.608336 7_4:-53184068 Msa1162480:CDS
AAGCTGGCGCAGTAGAACTA+GGG 0.611063 7_4:-53181724 Msa1162480:three_prime_UTR
AAGAATTCTGCGAAGTGTGG+AGG 0.620146 7_4:-53185018 Msa1162480:five_prime_UTR
CTACATAGGGGTGGAACAGG+TGG 0.622608 7_4:-53184091 Msa1162480:CDS
GCAACTATTCTTGGTTACAG+AGG 0.629555 7_4:-53184006 Msa1162480:intron
AGGAGGAGTCTACATAGGGG+TGG 0.649086 7_4:-53184100 Msa1162480:CDS
GCAACACTTCTCTCGACACG+AGG 0.650416 7_4:+53184186 None:intergenic
GACACGAGGAACATCATACC+AGG 0.658932 7_4:+53184200 None:intergenic
TATGTAGACTCCTCCTATGG+CGG 0.661958 7_4:+53184107 None:intergenic
GCAGAACTACAGGATGAAGA+GGG 0.663987 7_4:-53184067 Msa1162480:CDS
AGAACTTTGAAGATGATGGG+TGG 0.665092 7_4:-53184147 Msa1162480:CDS
CTACAACTCCAAACTCTGAG+CGG 0.696181 7_4:+53184995 None:intergenic
TAATGGACTCAGCAGAACGT+AGG 0.713597 7_4:-53184317 Msa1162480:CDS
ACGAGGAACATCATACCAGG+TGG 0.746444 7_4:+53184203 None:intergenic
CATAGGAGGAGTCTACATAG+GGG 0.784446 7_4:-53184103 Msa1162480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAAAATCTTCATATTT+GGG - chr7_4:53182051-53182070 Msa1162480:CDS 15.0%
!!! TAATTTCATAGTATTTGTTA+CGG + chr7_4:53183156-53183175 None:intergenic 15.0%
!!! CAAAAGTATATTTTATAGTT+GGG + chr7_4:53183570-53183589 None:intergenic 15.0%
!! ATAAAATGAAAACCCTAAAA+AGG + chr7_4:53181829-53181848 None:intergenic 20.0%
!! AAAATGTGGTATAGTTAAAA+GGG + chr7_4:53181855-53181874 None:intergenic 20.0%
!! AAAAATGTGGTATAGTTAAA+AGG + chr7_4:53181856-53181875 None:intergenic 20.0%
!! CAAAAATCCAAAAATCTTAA+AGG + chr7_4:53182009-53182028 None:intergenic 20.0%
!!! CTTTAAGATTTTTGGATTTT+TGG - chr7_4:53182007-53182026 Msa1162480:CDS 20.0%
!! CATATCAAAATCTTCATATT+TGG - chr7_4:53182050-53182069 Msa1162480:CDS 20.0%
!! AATTCTCTGATAATTATATG+AGG + chr7_4:53182752-53182771 None:intergenic 20.0%
!! AGTTAACTAGTTAGATAATT+AGG - chr7_4:53183060-53183079 Msa1162480:intron 20.0%
!! TAATTCCTAAGGTAAAAAAT+GGG - chr7_4:53183430-53183449 Msa1162480:intron 20.0%
!!! CCAAAAGTATATTTTATAGT+TGG + chr7_4:53183571-53183590 None:intergenic 20.0%
!!! CCAACTATAAAATATACTTT+TGG - chr7_4:53183568-53183587 Msa1162480:intron 20.0%
!! ATTGTCAAAATAAAAAAGTC+AGG + chr7_4:53184278-53184297 None:intergenic 20.0%
!! TTTCTTCAGTTATTTGTTTA+AGG - chr7_4:53184485-53184504 Msa1162480:intron 20.0%
!! AAAAATTATGCATTGTTACT+GGG + chr7_4:53184724-53184743 None:intergenic 20.0%
!! TAAAAATTATGCATTGTTAC+TGG + chr7_4:53184725-53184744 None:intergenic 20.0%
!! TTTCTCTATTCACCTTTTTA+GGG - chr7_4:53181814-53181833 Msa1162480:three_prime_UTR 25.0%
! AAATGTGGTATAGTTAAAAG+GGG + chr7_4:53181854-53181873 None:intergenic 25.0%
! AAGAAGATTGTTGAAAAATG+TGG + chr7_4:53181869-53181888 None:intergenic 25.0%
! TTGAACAATGAAATTGATAG+TGG + chr7_4:53181960-53181979 None:intergenic 25.0%
! AAATCCAAAAATCTTAAAGG+TGG + chr7_4:53182006-53182025 None:intergenic 25.0%
!!! TGGATTTTTGGATTTCAATT+TGG - chr7_4:53182019-53182038 Msa1162480:CDS 25.0%
! ACGATAATGTTACAAAACAA+TGG + chr7_4:53182291-53182310 None:intergenic 25.0%
! ACATGAGTAATTAGTAAAAG+TGG - chr7_4:53182314-53182333 Msa1162480:intron 25.0%
!! ATCACTCACAAAAACTTTTA+AGG - chr7_4:53182449-53182468 Msa1162480:intron 25.0%
!! TCACTCACAAAAACTTTTAA+GGG - chr7_4:53182450-53182469 Msa1162480:intron 25.0%
!! ATTAGAACTTTGAAGATGAT+GGG - chr7_4:53182573-53182592 Msa1162480:intron 25.0%
! CTGATAATTATATGAGGAAA+GGG + chr7_4:53182746-53182765 None:intergenic 25.0%
! TCTGATAATTATATGAGGAA+AGG + chr7_4:53182747-53182766 None:intergenic 25.0%
! TCCATAATATAATTCAGAAG+TGG - chr7_4:53182880-53182899 Msa1162480:intron 25.0%
! ACCACTTCTGAATTATATTA+TGG + chr7_4:53182884-53182903 None:intergenic 25.0%
! TCAAAAGGAAGAAAAAACAA+TGG + chr7_4:53182940-53182959 None:intergenic 25.0%
! AATGAGTTAATCATGTCAAA+AGG + chr7_4:53182955-53182974 None:intergenic 25.0%
! TTAAAGTAACACTTGTATGA+CGG - chr7_4:53183008-53183027 Msa1162480:intron 25.0%
! GTAATTCCTAAGGTAAAAAA+TGG - chr7_4:53183429-53183448 Msa1162480:intron 25.0%
!!! TTTAACCCATTTTTTACCTT+AGG + chr7_4:53183438-53183457 None:intergenic 25.0%
!!! TAAAAAATGGGTTAAAAGAC+TGG - chr7_4:53183442-53183461 Msa1162480:intron 25.0%
! AAATGGTATATGTACAGAAA+CGG - chr7_4:53183648-53183667 Msa1162480:intron 25.0%
! CAATAAAGAGAAAGAAATGA+AGG + chr7_4:53184031-53184050 None:intergenic 25.0%
!! TAGTTCTATTGATATATTCC+CGG - chr7_4:53184060-53184079 Msa1162480:CDS 25.0%
! CTACTAAGGTAATTATAGAA+TGG + chr7_4:53184090-53184109 None:intergenic 25.0%
! TAACACACAAGAAACATTTA+GGG + chr7_4:53184427-53184446 None:intergenic 25.0%
! TTAACACACAAGAAACATTT+AGG + chr7_4:53184428-53184447 None:intergenic 25.0%
! ACAGCTTACAAAAGAAAATA+TGG + chr7_4:53184849-53184868 None:intergenic 25.0%
! GTAGTATTATGTAAAGGTTA+TGG + chr7_4:53184934-53184953 None:intergenic 25.0%
! TGACTAGTAGTATTATGTAA+AGG + chr7_4:53184940-53184959 None:intergenic 25.0%
!! TATGATATCTGAAGTCTTAA+AGG - chr7_4:53185065-53185084 Msa1162480:five_prime_UTR 25.0%
TTTGTAAGCAAGAGTAGTAT+CGG - chr7_4:53181674-53181693 Msa1162480:three_prime_UTR 30.0%
! CTTTTCGATTTCTCTTTTTC+AGG - chr7_4:53181751-53181770 Msa1162480:three_prime_UTR 30.0%
! GTTTCTCTATTCACCTTTTT+AGG - chr7_4:53181813-53181832 Msa1162480:three_prime_UTR 30.0%
AATGTGGTATAGTTAAAAGG+GGG + chr7_4:53181853-53181872 None:intergenic 30.0%
ACATAAGCCGAATTGTAAAA+CGG + chr7_4:53181925-53181944 None:intergenic 30.0%
!!! ATTCGGCTTATGTTATTTTC+TGG - chr7_4:53181932-53181951 Msa1162480:three_prime_UTR 30.0%
!!! TTCTCCACCTTTAAGATTTT+TGG - chr7_4:53181999-53182018 Msa1162480:exon 30.0%
CAATAAGGTGCAACAAATTA+AGG + chr7_4:53182084-53182103 None:intergenic 30.0%
ACATAAGTGCTTATGCAATA+AGG + chr7_4:53182099-53182118 None:intergenic 30.0%
TACAAAACAATGGACATGTT+TGG + chr7_4:53182281-53182300 None:intergenic 30.0%
! TTTAAGCCTTCTATTCCTTT+TGG - chr7_4:53182356-53182375 Msa1162480:intron 30.0%
! TTAAGCCTTCTATTCCTTTT+GGG - chr7_4:53182357-53182376 Msa1162480:intron 30.0%
AAATTCCCAAAAGGAATAGA+AGG + chr7_4:53182365-53182384 None:intergenic 30.0%
!! TCCTTTTGGGAATTTTTTGT+TGG - chr7_4:53182370-53182389 Msa1162480:intron 30.0%
ACCAACAAAAAATTCCCAAA+AGG + chr7_4:53182374-53182393 None:intergenic 30.0%
!! TTGGTTTGCAGAGATTATAA+TGG - chr7_4:53182389-53182408 Msa1162480:intron 30.0%
! GATTAGAACTTTGAAGATGA+TGG - chr7_4:53182572-53182591 Msa1162480:intron 30.0%
TAGTAGATAAGCATCATATG+AGG - chr7_4:53182903-53182922 Msa1162480:intron 30.0%
CTAGTTAACTACCTAATAAC+AGG + chr7_4:53183050-53183069 None:intergenic 30.0%
ACTTATGATTACGAAATGTC+AGG + chr7_4:53183207-53183226 None:intergenic 30.0%
TAATTGAGTAATTGTGAGTC+AGG + chr7_4:53183232-53183251 None:intergenic 30.0%
ATGAGAATGAGTAATTCCTA+AGG - chr7_4:53183419-53183438 Msa1162480:intron 30.0%
AAGATTGCAAGTTAGATTGT+AGG + chr7_4:53183535-53183554 None:intergenic 30.0%
!! TATACTTTTGGTGTACTGAT+TGG - chr7_4:53183580-53183599 Msa1162480:intron 30.0%
TTCTCTTCTAGACATAGATT+GGG + chr7_4:53183623-53183642 None:intergenic 30.0%
TTTCTCTTCTAGACATAGAT+TGG + chr7_4:53183624-53183643 None:intergenic 30.0%
TCTAGAAGAGAAAGAAGAAA+TGG - chr7_4:53183631-53183650 Msa1162480:intron 30.0%
AATGGTATATGTACAGAAAC+GGG - chr7_4:53183649-53183668 Msa1162480:intron 30.0%
AGCATTATGGAAATAACTCT+GGG + chr7_4:53183923-53183942 None:intergenic 30.0%
AAGCATTATGGAAATAACTC+TGG + chr7_4:53183924-53183943 None:intergenic 30.0%
! ATAATGCTTTTGTGAAACAC+CGG - chr7_4:53183935-53183954 Msa1162480:intron 30.0%
GCAGTGTATATTATAGAATC+CGG + chr7_4:53183957-53183976 None:intergenic 30.0%
AGTTCTATTGATATATTCCC+GGG - chr7_4:53184061-53184080 Msa1162480:CDS 30.0%
TAATTATAGAATGGTTTCCC+GGG + chr7_4:53184081-53184100 None:intergenic 30.0%
GTAATTATAGAATGGTTTCC+CGG + chr7_4:53184082-53184101 None:intergenic 30.0%
! TGTGTGTGTTTCTATGTATT+GGG - chr7_4:53184149-53184168 Msa1162480:CDS 30.0%
AAGACTTCACAAAATGAATG+CGG + chr7_4:53184197-53184216 None:intergenic 30.0%
! TAGAAGGCTTGTAGATTTTA+TGG - chr7_4:53184249-53184268 Msa1162480:CDS 30.0%
! TTGTGCTCTTTTATTATCAG+TGG - chr7_4:53184298-53184317 Msa1162480:CDS 30.0%
TATGAGTTATGTGATTTCAG+TGG - chr7_4:53184327-53184346 Msa1162480:intron 30.0%
! ATACATGGACTAAAGTACAA+TGG + chr7_4:53184389-53184408 None:intergenic 30.0%
TACTTTAGTCCATGTATTCA+AGG - chr7_4:53184392-53184411 Msa1162480:intron 30.0%
AACACACAAGAAACATTTAG+GGG + chr7_4:53184426-53184445 None:intergenic 30.0%
TTTGTTTAAGGAGCTCTATA+TGG - chr7_4:53184497-53184516 Msa1162480:intron 30.0%
TAACAAGCTTTGCATAATGT+CGG - chr7_4:53184556-53184575 Msa1162480:intron 30.0%
TTCCCTTCATCATGTTTAAA+AGG + chr7_4:53184670-53184689 None:intergenic 30.0%
! TTTTAAACATGATGAAGGGA+AGG - chr7_4:53184669-53184688 Msa1162480:intron 30.0%
TGAAATGTCTTTGGTCATAA+AGG + chr7_4:53184757-53184776 None:intergenic 30.0%
CAATGAACTTGAAATGTCTT+TGG + chr7_4:53184766-53184785 None:intergenic 30.0%
!! CAAAGACATTTCAAGTTCAT+TGG - chr7_4:53184764-53184783 Msa1162480:intron 30.0%
!! TTTGTTGAGTTGGAATTACA+TGG - chr7_4:53184819-53184838 Msa1162480:intron 30.0%
ACACATCATCGTACATTTAT+TGG + chr7_4:53184893-53184912 None:intergenic 30.0%
TGTACGATGATGTGTTAATT+TGG - chr7_4:53184898-53184917 Msa1162480:intron 30.0%
ATGAATACTATACATGAAGC+TGG - chr7_4:53184983-53185002 Msa1162480:five_prime_UTR 30.0%
! CTATGCTCCGTTTTACAATT+CGG - chr7_4:53181915-53181934 Msa1162480:three_prime_UTR 35.0%
AAGCACTATTGTGTCTGTTT+AGG + chr7_4:53182228-53182247 None:intergenic 35.0%
GAATAGAAGGCTTAAACACT+CGG + chr7_4:53182352-53182371 None:intergenic 35.0%
ATGAAGAGGGATCTTGTAAA+TGG - chr7_4:53182669-53182688 Msa1162480:intron 35.0%
AGATAAGCATCATATGAGGA+AGG - chr7_4:53182907-53182926 Msa1162480:intron 35.0%
TCATTGTGCTAAATTGCTAC+TGG - chr7_4:53182970-53182989 Msa1162480:intron 35.0%
AAGTAGGATCTTGACAACTT+TGG + chr7_4:53183094-53183113 None:intergenic 35.0%
AAGTTGTCAAGATCCTACTT+AGG - chr7_4:53183094-53183113 Msa1162480:intron 35.0%
CACAATTACTCAATTAGCAC+TGG - chr7_4:53183236-53183255 Msa1162480:intron 35.0%
TTTATGATCTTACGACCACT+GGG + chr7_4:53183502-53183521 None:intergenic 35.0%
! TTTTATGATCTTACGACCAC+TGG + chr7_4:53183503-53183522 None:intergenic 35.0%
ATATGTACAGAAACGGGAAT+AGG - chr7_4:53183655-53183674 Msa1162480:intron 35.0%
! TTAGTGGATAGTTGTGTTAG+AGG - chr7_4:53183685-53183704 Msa1162480:intron 35.0%
! TAGTGGATAGTTGTGTTAGA+GGG - chr7_4:53183686-53183705 Msa1162480:intron 35.0%
CGCTGTAACATGATTATGAA+GGG - chr7_4:53183735-53183754 Msa1162480:intron 35.0%
TATGAAGGGTAGATGATGTT+TGG - chr7_4:53183749-53183768 Msa1162480:intron 35.0%
ATGAAGGGTAGATGATGTTT+GGG - chr7_4:53183750-53183769 Msa1162480:intron 35.0%
ACACTGCAGCAATGAAATAT+AGG + chr7_4:53183880-53183899 None:intergenic 35.0%
!! GGTGTTTCACAAAAGCATTA+TGG + chr7_4:53183936-53183955 None:intergenic 35.0%
TTACCTTAGTAGTGCATCTT+TGG - chr7_4:53184098-53184117 Msa1162480:CDS 35.0%
AGCAAGAAATTATCACCTTG+TGG - chr7_4:53184123-53184142 Msa1162480:CDS 35.0%
! GTGTGTGTGTTTCTATGTAT+TGG - chr7_4:53184148-53184167 Msa1162480:CDS 35.0%
! GTGAAGTCTTATGTCGTTTA+AGG - chr7_4:53184207-53184226 Msa1162480:CDS 35.0%
TCATAGAACCTCAACATAGA+AGG - chr7_4:53184233-53184252 Msa1162480:CDS 35.0%
TTTGTAGCAACTAGCAAGAA+AGG + chr7_4:53184360-53184379 None:intergenic 35.0%
ACAAGAAACATTTAGGGGTT+AGG + chr7_4:53184421-53184440 None:intergenic 35.0%
! CATAATGTCGGTTATACTGT+AGG - chr7_4:53184568-53184587 Msa1162480:intron 35.0%
!!! ATCTGCAGTCATTGATTTTG+CGG - chr7_4:53184639-53184658 Msa1162480:intron 35.0%
TTCATCATGTTTAAAAGGCG+TGG + chr7_4:53184665-53184684 None:intergenic 35.0%
! ACGCCTTTTAAACATGATGA+AGG - chr7_4:53184664-53184683 Msa1162480:intron 35.0%
! CGCCTTTTAAACATGATGAA+GGG - chr7_4:53184665-53184684 Msa1162480:intron 35.0%
ATTCCAACTCAACAAACAAC+TGG + chr7_4:53184815-53184834 None:intergenic 35.0%
TACTAGTCAACATTCTTCCA+TGG - chr7_4:53184951-53184970 Msa1162480:intron 35.0%
ACTAGTCAACATTCTTCCAT+GGG - chr7_4:53184952-53184971 Msa1162480:intron 35.0%
GTATTCATCAATTCATCCCA+TGG + chr7_4:53184971-53184990 None:intergenic 35.0%
TCTTAAAGGTGGAGAAACTG+TGG + chr7_4:53181995-53182014 None:intergenic 40.0%
!! ACTTTTAAGGGTGCAACAAC+TGG - chr7_4:53182462-53182481 Msa1162480:intron 40.0%
TTTAGTTGCTGGCACTATCT+GGG - chr7_4:53182485-53182504 Msa1162480:intron 40.0%
! TTCAAAGTTCTAATCAGCCC+CGG + chr7_4:53182567-53182586 None:intergenic 40.0%
!! AGAACTTTGAAGATGATGGG+TGG - chr7_4:53182576-53182595 Msa1162480:intron 40.0%
!! GATCTTGTAAATGGTGCTGT+TGG - chr7_4:53182678-53182697 Msa1162480:intron 40.0%
GCAACTATTCTTGGTTACAG+AGG - chr7_4:53182717-53182736 Msa1162480:intron 40.0%
GGAGTATGTCACCTGTTATT+AGG - chr7_4:53183036-53183055 Msa1162480:intron 40.0%
TTGTGCATTCTCAAAGCTTC+TGG + chr7_4:53183303-53183322 None:intergenic 40.0%
TTGAGAATGCACAAGTAGAG+AGG - chr7_4:53183309-53183328 Msa1162480:intron 40.0%
AGGAAGAGAAGTAATTGCTG+AGG - chr7_4:53183355-53183374 Msa1162480:intron 40.0%
GGAAGAGAAGTAATTGCTGA+GGG - chr7_4:53183356-53183375 Msa1162480:intron 40.0%
GAAGAGAAGTAATTGCTGAG+GGG - chr7_4:53183357-53183376 Msa1162480:intron 40.0%
AAGAGAAGTAATTGCTGAGG+GGG - chr7_4:53183358-53183377 Msa1162480:intron 40.0%
GCGCTGTAACATGATTATGA+AGG - chr7_4:53183734-53183753 Msa1162480:intron 40.0%
TGAAGGGTAGATGATGTTTG+GGG - chr7_4:53183751-53183770 Msa1162480:intron 40.0%
TTGCTGCAGTGTTCTGTAAT+TGG - chr7_4:53183888-53183907 Msa1162480:intron 40.0%
TGCTGCAGTGTTCTGTAATT+GGG - chr7_4:53183889-53183908 Msa1162480:intron 40.0%
TAGCCAAAGATGCACTACTA+AGG + chr7_4:53184104-53184123 None:intergenic 40.0%
! GTGTGTTTCTATGTATTGGG+AGG - chr7_4:53184152-53184171 Msa1162480:CDS 40.0%
! TGTTTCTATGTATTGGGAGG+AGG - chr7_4:53184155-53184174 Msa1162480:CDS 40.0%
CTTCACAAAATGAATGCGGA+TGG + chr7_4:53184193-53184212 None:intergenic 40.0%
TCTACAAGCCTTCTATGTTG+AGG + chr7_4:53184244-53184263 None:intergenic 40.0%
GTTAGGCATCCTTGAATACA+TGG + chr7_4:53184404-53184423 None:intergenic 40.0%
! ATGTCGGTTATACTGTAGGA+AGG - chr7_4:53184572-53184591 Msa1162480:intron 40.0%
ATCTCAACTGCAATTTCTGC+CGG - chr7_4:53184598-53184617 Msa1162480:intron 40.0%
CAGAAGAATTCTGCGAAGTG+TGG - chr7_4:53181702-53181721 Msa1162480:three_prime_UTR 45.0%
AAGAATTCTGCGAAGTGTGG+AGG - chr7_4:53181705-53181724 Msa1162480:three_prime_UTR 45.0%
CTACAACTCCAAACTCTGAG+CGG + chr7_4:53181731-53181750 None:intergenic 45.0%
AGGTGGAGAAACTGTGGTAT+TGG + chr7_4:53181989-53182008 None:intergenic 45.0%
!! TAATGGACTCAGCAGAACGT+AGG - chr7_4:53182406-53182425 Msa1162480:intron 45.0%
! GCAACAACTGGTTTAGTTGC+TGG - chr7_4:53182474-53182493 Msa1162480:intron 45.0%
GTTTAGTTGCTGGCACTATC+TGG - chr7_4:53182484-53182503 Msa1162480:intron 45.0%
TTAGTTGCTGGCACTATCTG+GGG - chr7_4:53182486-53182505 Msa1162480:intron 45.0%
!! TTGAAGATGATGGGTGGCTA+TGG - chr7_4:53182582-53182601 Msa1162480:intron 45.0%
TATGTAGACTCCTCCTATGG+CGG + chr7_4:53182619-53182638 None:intergenic 45.0%
CCATAGGAGGAGTCTACATA+GGG - chr7_4:53182619-53182638 Msa1162480:intron 45.0%
CATAGGAGGAGTCTACATAG+GGG - chr7_4:53182620-53182639 Msa1162480:intron 45.0%
TGCAGAACTACAGGATGAAG+AGG - chr7_4:53182655-53182674 Msa1162480:intron 45.0%
GCAGAACTACAGGATGAAGA+GGG - chr7_4:53182656-53182675 Msa1162480:intron 45.0%
!! CTTGTAAATGGTGCTGTTGG+TGG - chr7_4:53182681-53182700 Msa1162480:intron 45.0%
GTTGCTGGTGCAACTATTCT+TGG - chr7_4:53182708-53182727 Msa1162480:intron 45.0%
AACACTTGTATGACGGTTGC+TGG - chr7_4:53183015-53183034 Msa1162480:intron 45.0%
GGATCTTGACAACTTTGGCT+GGG + chr7_4:53183089-53183108 None:intergenic 45.0%
AGGATCTTGACAACTTTGGC+TGG + chr7_4:53183090-53183109 None:intergenic 45.0%
AGATCCTACTTAGGATCGTG+AGG - chr7_4:53183103-53183122 Msa1162480:intron 45.0%
TCTCAAAGCTTCTGGTAGCA+GGG + chr7_4:53183295-53183314 None:intergenic 45.0%
TTCTCAAAGCTTCTGGTAGC+AGG + chr7_4:53183296-53183315 None:intergenic 45.0%
TGCACAAGTAGAGAGGAACT+TGG - chr7_4:53183316-53183335 Msa1162480:intron 45.0%
GCACAAGTAGAGAGGAACTT+GGG - chr7_4:53183317-53183336 Msa1162480:intron 45.0%
AAGTAGAGAGGAACTTGGGA+GGG - chr7_4:53183321-53183340 Msa1162480:intron 45.0%
! TTGCGAGTTAGTTTACCCAG+TGG - chr7_4:53183484-53183503 Msa1162480:intron 45.0%
GGGAATAGGAACTCAGTTAG+TGG - chr7_4:53183669-53183688 Msa1162480:intron 45.0%
GAAACACACACACAACCACA+AGG + chr7_4:53184141-53184160 None:intergenic 45.0%
TGAAGAAACTCGCAGCATGA+GGG + chr7_4:53184473-53184492 None:intergenic 45.0%
AATTTCTGCCGGATCAGCAT+TGG - chr7_4:53184609-53184628 Msa1162480:intron 45.0%
TGTGAAAGCCAATGCTGATC+CGG + chr7_4:53184620-53184639 None:intergenic 45.0%
! GAGCCAGTTGTTTGTTGAGT+TGG - chr7_4:53184809-53184828 Msa1162480:intron 45.0%
AGCAGAACGTAGGTACTTCG+AGG - chr7_4:53182416-53182435 Msa1162480:intron 50.0%
ACGTAGGTACTTCGAGGATG+AGG - chr7_4:53182422-53182441 Msa1162480:intron 50.0%
ACGAGGAACATCATACCAGG+TGG + chr7_4:53182523-53182542 None:intergenic 50.0%
GACACGAGGAACATCATACC+AGG + chr7_4:53182526-53182545 None:intergenic 50.0%
!! CGAGAGAAGTGTTGCTCTTC+CGG - chr7_4:53182545-53182564 Msa1162480:intron 50.0%
!! GAGAGAAGTGTTGCTCTTCC+GGG - chr7_4:53182546-53182565 Msa1162480:intron 50.0%
!! AGAGAAGTGTTGCTCTTCCG+GGG - chr7_4:53182547-53182566 Msa1162480:intron 50.0%
GCCATAGGAGGAGTCTACAT+AGG - chr7_4:53182618-53182637 Msa1162480:intron 50.0%
CCCTATGTAGACTCCTCCTA+TGG + chr7_4:53182622-53182641 None:intergenic 50.0%
AGTCTACATAGGGGTGGAAC+AGG - chr7_4:53182629-53182648 Msa1162480:intron 50.0%
AACAGGTGGTGCAGAACTAC+AGG - chr7_4:53182646-53182665 Msa1162480:intron 50.0%
!! GCTGTTGGTGGATTTGTTGC+TGG - chr7_4:53182693-53182712 Msa1162480:intron 50.0%
TCCTACTTAGGATCGTGAGG+AGG - chr7_4:53183106-53183125 Msa1162480:intron 50.0%
CCTACTTAGGATCGTGAGGA+GGG - chr7_4:53183107-53183126 Msa1162480:intron 50.0%
!! GTAGTGGGTCAAGGGTGATA+GGG + chr7_4:53183262-53183281 None:intergenic 50.0%
!! TGTAGTGGGTCAAGGGTGAT+AGG + chr7_4:53183263-53183282 None:intergenic 50.0%
!! GTGCTTGTGTAGTGGGTCAA+GGG + chr7_4:53183270-53183289 None:intergenic 50.0%
!! TGTGCTTGTGTAGTGGGTCA+AGG + chr7_4:53183271-53183290 None:intergenic 50.0%
CAAGTAGAGAGGAACTTGGG+AGG - chr7_4:53183320-53183339 Msa1162480:intron 50.0%
CTGATTGGACCGTGACAAAC+AGG - chr7_4:53183595-53183614 Msa1162480:intron 50.0%
GATTGGGAGCCTGTTTGTCA+CGG + chr7_4:53183607-53183626 None:intergenic 50.0%
! AGGGTTAGTGATGCAGACTC+TGG - chr7_4:53183705-53183724 Msa1162480:intron 50.0%
! GGGTTAGTGATGCAGACTCT+GGG - chr7_4:53183706-53183725 Msa1162480:intron 50.0%
GGTAGATGATGTTTGGGGAG+CGG - chr7_4:53183756-53183775 Msa1162480:intron 50.0%
GTAGATGATGTTTGGGGAGC+GGG - chr7_4:53183757-53183776 Msa1162480:intron 50.0%
TAGATGATGTTTGGGGAGCG+GGG - chr7_4:53183758-53183777 Msa1162480:intron 50.0%
CTGAAGAAACTCGCAGCATG+AGG + chr7_4:53184474-53184493 None:intergenic 50.0%
AAGCTGGCGCAGTAGAACTA+GGG - chr7_4:53184999-53185018 Msa1162480:five_prime_UTR 50.0%
GCAACACTTCTCTCGACACG+AGG + chr7_4:53182540-53182559 None:intergenic 55.0%
AGGAGGAGTCTACATAGGGG+TGG - chr7_4:53182623-53182642 Msa1162480:intron 55.0%
CTACATAGGGGTGGAACAGG+TGG - chr7_4:53182632-53182651 Msa1162480:intron 55.0%
CCCTCCTCACGATCCTAAGT+AGG + chr7_4:53183110-53183129 None:intergenic 55.0%
CAGGGCTGTGCTTGTGTAGT+GGG + chr7_4:53183277-53183296 None:intergenic 55.0%
AGAGGAACTTGGGAGGGATG+AGG - chr7_4:53183327-53183346 Msa1162480:intron 55.0%
TTGGGAGGGATGAGGTTGAG+AGG - chr7_4:53183335-53183354 Msa1162480:intron 55.0%
AGATGATGTTTGGGGAGCGG+GGG - chr7_4:53183759-53183778 Msa1162480:intron 55.0%
GCAAAGTCTCCTCCACCCAA+TGG + chr7_4:53183791-53183810 None:intergenic 55.0%
GAAGCTGGCGCAGTAGAACT+AGG - chr7_4:53184998-53185017 Msa1162480:five_prime_UTR 55.0%
TGTGGAGGCCGCTCAGAGTT+TGG - chr7_4:53181720-53181739 Msa1162480:three_prime_UTR 60.0%
!! GGGGTACTGTAGTTGCCACC+TGG - chr7_4:53182505-53182524 Msa1162480:intron 60.0%
GACTCCTCCTATGGCGGCAA+AGG + chr7_4:53182613-53182632 None:intergenic 60.0%
GCAGGGCTGTGCTTGTGTAG+TGG + chr7_4:53183278-53183297 None:intergenic 60.0%
GATGATGTTTGGGGAGCGGG+GGG - chr7_4:53183760-53183779 Msa1162480:intron 60.0%
ATGATGTTTGGGGAGCGGGG+GGG - chr7_4:53183761-53183780 Msa1162480:intron 60.0%
GGAGCGACCTTTGCCGCCAT+AGG - chr7_4:53182603-53182622 Msa1162480:intron 65.0%
GCGACCTTTGCCGCCATAGG+AGG - chr7_4:53182606-53182625 Msa1162480:intron 65.0%
TGATGTTTGGGGAGCGGGGG+GGG - chr7_4:53183762-53183781 Msa1162480:intron 65.0%
GATGTTTGGGGAGCGGGGGG+GGG - chr7_4:53183763-53183782 Msa1162480:intron 70.0%
ATGTTTGGGGAGCGGGGGGG+GGG - chr7_4:53183764-53183783 Msa1162480:intron 70.0%
GAGCGGGGGGGGGGTCCATT+GGG - chr7_4:53183773-53183792 Msa1162480:intron 75.0%
GGGGGGGGTCCATTGGGTGG+AGG - chr7_4:53183779-53183798 Msa1162480:intron 75.0%
! GGAGCGGGGGGGGGGTCCAT+TGG - chr7_4:53183772-53183791 Msa1162480:intron 80.0%
! CGGGGGGGGGGTCCATTGGG+TGG - chr7_4:53183776-53183795 Msa1162480:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53181631 53185114 53181631 ID=Msa1162480;Name=Msa1162480
chr7_4 mRNA 53181631 53185114 53181631 ID=Msa1162480-mRNA-1;Parent=Msa1162480;Name=Msa1162480-mRNA-1;_AED=0.18;_eAED=0.18;_QI=150|1|1|1|0.5|0.33|3|376|159
chr7_4 exon 53181631 53182155 53181631 ID=Msa1162480-mRNA-1:exon:15384;Parent=Msa1162480-mRNA-1
chr7_4 exon 53184007 53184345 53184007 ID=Msa1162480-mRNA-1:exon:15383;Parent=Msa1162480-mRNA-1
chr7_4 exon 53184973 53185114 53184973 ID=Msa1162480-mRNA-1:exon:15382;Parent=Msa1162480-mRNA-1
chr7_4 five_prime_UTR 53184973 53185114 53184973 ID=Msa1162480-mRNA-1:five_prime_utr;Parent=Msa1162480-mRNA-1
chr7_4 five_prime_UTR 53184338 53184345 53184338 ID=Msa1162480-mRNA-1:five_prime_utr;Parent=Msa1162480-mRNA-1
chr7_4 CDS 53184007 53184337 53184007 ID=Msa1162480-mRNA-1:cds;Parent=Msa1162480-mRNA-1
chr7_4 CDS 53182007 53182155 53182007 ID=Msa1162480-mRNA-1:cds;Parent=Msa1162480-mRNA-1
chr7_4 three_prime_UTR 53181631 53182006 53181631 ID=Msa1162480-mRNA-1:three_prime_utr;Parent=Msa1162480-mRNA-1
Gene Sequence

>Msa1162480

ATGGACTCAGCAGAACGTAGGTACTTCGAGGATGAGGATTCATCACTCACAAAAACTTTTAAGGGTGCAACAACTGGTTTAGTTGCTGGCACTATCTGGGGTACTGTAGTTGCCACCTGGTATGATGTTCCTCGTGTCGAGAGAAGTGTTGCTCTTCCGGGGCTGATTAGAACTTTGAAGATGATGGGTGGCTATGGAGCGACCTTTGCCGCCATAGGAGGAGTCTACATAGGGGTGGAACAGGTGGTGCAGAACTACAGGATGAAGAGGGATCTTGTAAATGGTGCTGTTGGTGGATTTGTTGCTGGTGCAACTATTCTTGGTTACAGAGGAAGGAGCATCTCAACTGCAATTTCTGCCGGATCAGCATTGGCTTTCACATCTGCAGTCATTGATTTTGCGGCCACGCCTTTTAAACATGATGAAGGGAAGGAGTATGCTGCATTAACTACAAAGAAAAGACCCAGTAACAATGCATAA

Protein sequence

>Msa1162480

MDSAERRYFEDEDSSLTKTFKGATTGLVAGTIWGTVVATWYDVPRVERSVALPGLIRTLKMMGGYGATFAAIGGVYIGVEQVVQNYRMKRDLVNGAVGGFVAGATILGYRGRSISTAISAGSALAFTSAVIDFAATPFKHDEGKEYAALTTKKRPSNNA*