Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1162480 | XP_024627116.1 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.27e-107 | 313 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1162480 | sp|O48528|OP163_ARATH | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.08e-70 | 211 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1162480 | A2Q4T7 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 6.08e-108 | 313 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0687630 | Msa1162480 | 0.813879 | 2.047230e-51 | -8.615850e-47 |
Msa1116060 | Msa1162480 | 0.999052 | 8.127640e-288 | -8.615850e-47 |
Msa1162480 | Msa1404190 | 0.804421 | 2.177389e-49 | -8.615850e-47 |
Msa0966270 | Msa1162480 | 0.816535 | 5.260487e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1162480 | MtrunA17_Chr7g0258441 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.17e-111 | 313 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1162480 | AT2G42210.2 | 67.532 | 154 | 50 | 0 | 1 | 154 | 15 | 168 | 7.85e-71 | 211 |
Msa1162480 | AT2G42210.1 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
Msa1162480 | AT2G42210.3 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
Msa1162480 | AT2G42210.4 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
Msa1162480 | AT2G42210.5 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
Find 67 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACATCATCGTACATTTAT+TGG | 0.126510 | 7_4:+53181833 | None:intergenic |
GTTTAGTTGCTGGCACTATC+TGG | 0.151026 | 7_4:-53184239 | Msa1162480:CDS |
TTCCCTTCATCATGTTTAAA+AGG | 0.206706 | 7_4:+53182056 | None:intergenic |
TATGATATCTGAAGTCTTAA+AGG | 0.215200 | 7_4:-53181658 | Msa1162480:three_prime_UTR |
CGAGAGAAGTGTTGCTCTTC+CGG | 0.237509 | 7_4:-53184178 | Msa1162480:CDS |
TGTACGATGATGTGTTAATT+TGG | 0.268176 | 7_4:-53181825 | Msa1162480:three_prime_UTR |
CAATGAACTTGAAATGTCTT+TGG | 0.277207 | 7_4:+53181960 | None:intergenic |
CAAAGACATTTCAAGTTCAT+TGG | 0.286400 | 7_4:-53181959 | Msa1162480:three_prime_UTR |
ACAGCTTACAAAAGAAAATA+TGG | 0.309843 | 7_4:+53181877 | None:intergenic |
TGAAATGTCTTTGGTCATAA+AGG | 0.311002 | 7_4:+53181969 | None:intergenic |
GAGAGAAGTGTTGCTCTTCC+GGG | 0.333701 | 7_4:-53184177 | Msa1162480:CDS |
GTTGCTGGTGCAACTATTCT+TGG | 0.345412 | 7_4:-53184015 | Msa1162480:CDS |
GCTGTTGGTGGATTTGTTGC+TGG | 0.348409 | 7_4:-53184030 | Msa1162480:CDS |
TGTGGAGGCCGCTCAGAGTT+TGG | 0.362168 | 7_4:-53185003 | Msa1162480:five_prime_UTR |
GCAACAACTGGTTTAGTTGC+TGG | 0.371072 | 7_4:-53184249 | Msa1162480:CDS |
TTTAGTTGCTGGCACTATCT+GGG | 0.403267 | 7_4:-53184238 | Msa1162480:CDS |
ATGAAGAGGGATCTTGTAAA+TGG | 0.414469 | 7_4:-53184054 | Msa1162480:CDS |
TTGGTTTGCAGAGATTATAA+TGG | 0.415470 | 7_4:-53184334 | Msa1162480:intron |
AGTCTACATAGGGGTGGAAC+AGG | 0.418652 | 7_4:-53184094 | Msa1162480:CDS |
GTAGTATTATGTAAAGGTTA+TGG | 0.453349 | 7_4:+53181792 | None:intergenic |
ATTCCAACTCAACAAACAAC+TGG | 0.454172 | 7_4:+53181911 | None:intergenic |
TGTGAAAGCCAATGCTGATC+CGG | 0.457987 | 7_4:+53182106 | None:intergenic |
GAAGCTGGCGCAGTAGAACT+AGG | 0.462544 | 7_4:-53181725 | Msa1162480:three_prime_UTR |
CTTGTAAATGGTGCTGTTGG+TGG | 0.465052 | 7_4:-53184042 | Msa1162480:CDS |
GAGCCAGTTGTTTGTTGAGT+TGG | 0.465517 | 7_4:-53181914 | Msa1162480:three_prime_UTR |
ATCTCAACTGCAATTTCTGC+CGG | 0.488258 | 7_4:-53182125 | Msa1162480:CDS |
GATTAGAACTTTGAAGATGA+TGG | 0.494059 | 7_4:-53184151 | Msa1162480:CDS |
AATTTCTGCCGGATCAGCAT+TGG | 0.497080 | 7_4:-53182114 | Msa1162480:CDS |
GACTCCTCCTATGGCGGCAA+AGG | 0.503480 | 7_4:+53184113 | None:intergenic |
TTTGTAAGCAAGAGTAGTAT+CGG | 0.505455 | 7_4:-53185049 | Msa1162480:five_prime_UTR |
TACTAGTCAACATTCTTCCA+TGG | 0.506310 | 7_4:-53181772 | Msa1162480:three_prime_UTR |
AACAGGTGGTGCAGAACTAC+AGG | 0.509492 | 7_4:-53184077 | Msa1162480:CDS |
TTGAAGATGATGGGTGGCTA+TGG | 0.511278 | 7_4:-53184141 | Msa1162480:CDS |
TTCATCATGTTTAAAAGGCG+TGG | 0.528434 | 7_4:+53182061 | None:intergenic |
GGAGCGACCTTTGCCGCCAT+AGG | 0.530743 | 7_4:-53184120 | Msa1162480:CDS |
ATGAATACTATACATGAAGC+TGG | 0.538495 | 7_4:-53181740 | Msa1162480:three_prime_UTR |
ACGTAGGTACTTCGAGGATG+AGG | 0.541797 | 7_4:-53184301 | Msa1162480:CDS |
TGACTAGTAGTATTATGTAA+AGG | 0.543217 | 7_4:+53181786 | None:intergenic |
GCGACCTTTGCCGCCATAGG+AGG | 0.543885 | 7_4:-53184117 | Msa1162480:CDS |
TTAGTTGCTGGCACTATCTG+GGG | 0.550686 | 7_4:-53184237 | Msa1162480:CDS |
CCATAGGAGGAGTCTACATA+GGG | 0.550718 | 7_4:-53184104 | Msa1162480:CDS |
CCCTATGTAGACTCCTCCTA+TGG | 0.554940 | 7_4:+53184104 | None:intergenic |
GGGGTACTGTAGTTGCCACC+TGG | 0.555518 | 7_4:-53184218 | Msa1162480:CDS |
TTTGTTGAGTTGGAATTACA+TGG | 0.555647 | 7_4:-53181904 | Msa1162480:three_prime_UTR |
GATCTTGTAAATGGTGCTGT+TGG | 0.564385 | 7_4:-53184045 | Msa1162480:CDS |
ATTAGAACTTTGAAGATGAT+GGG | 0.565356 | 7_4:-53184150 | Msa1162480:CDS |
TTCAAAGTTCTAATCAGCCC+CGG | 0.577416 | 7_4:+53184159 | None:intergenic |
AGCAGAACGTAGGTACTTCG+AGG | 0.590571 | 7_4:-53184307 | Msa1162480:CDS |
AGAGAAGTGTTGCTCTTCCG+GGG | 0.596304 | 7_4:-53184176 | Msa1162480:CDS |
ACTAGTCAACATTCTTCCAT+GGG | 0.596601 | 7_4:-53181771 | Msa1162480:three_prime_UTR |
GTATTCATCAATTCATCCCA+TGG | 0.596875 | 7_4:+53181755 | None:intergenic |
CAGAAGAATTCTGCGAAGTG+TGG | 0.606590 | 7_4:-53185021 | Msa1162480:five_prime_UTR |
TGCAGAACTACAGGATGAAG+AGG | 0.608336 | 7_4:-53184068 | Msa1162480:CDS |
AAGCTGGCGCAGTAGAACTA+GGG | 0.611063 | 7_4:-53181724 | Msa1162480:three_prime_UTR |
AAGAATTCTGCGAAGTGTGG+AGG | 0.620146 | 7_4:-53185018 | Msa1162480:five_prime_UTR |
CTACATAGGGGTGGAACAGG+TGG | 0.622608 | 7_4:-53184091 | Msa1162480:CDS |
GCAACTATTCTTGGTTACAG+AGG | 0.629555 | 7_4:-53184006 | Msa1162480:intron |
AGGAGGAGTCTACATAGGGG+TGG | 0.649086 | 7_4:-53184100 | Msa1162480:CDS |
GCAACACTTCTCTCGACACG+AGG | 0.650416 | 7_4:+53184186 | None:intergenic |
GACACGAGGAACATCATACC+AGG | 0.658932 | 7_4:+53184200 | None:intergenic |
TATGTAGACTCCTCCTATGG+CGG | 0.661958 | 7_4:+53184107 | None:intergenic |
GCAGAACTACAGGATGAAGA+GGG | 0.663987 | 7_4:-53184067 | Msa1162480:CDS |
AGAACTTTGAAGATGATGGG+TGG | 0.665092 | 7_4:-53184147 | Msa1162480:CDS |
CTACAACTCCAAACTCTGAG+CGG | 0.696181 | 7_4:+53184995 | None:intergenic |
TAATGGACTCAGCAGAACGT+AGG | 0.713597 | 7_4:-53184317 | Msa1162480:CDS |
ACGAGGAACATCATACCAGG+TGG | 0.746444 | 7_4:+53184203 | None:intergenic |
CATAGGAGGAGTCTACATAG+GGG | 0.784446 | 7_4:-53184103 | Msa1162480:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATCAAAATCTTCATATTT+GGG | - | chr7_4:53182051-53182070 | Msa1162480:CDS | 15.0% |
!!! | TAATTTCATAGTATTTGTTA+CGG | + | chr7_4:53183156-53183175 | None:intergenic | 15.0% |
!!! | CAAAAGTATATTTTATAGTT+GGG | + | chr7_4:53183570-53183589 | None:intergenic | 15.0% |
!! | ATAAAATGAAAACCCTAAAA+AGG | + | chr7_4:53181829-53181848 | None:intergenic | 20.0% |
!! | AAAATGTGGTATAGTTAAAA+GGG | + | chr7_4:53181855-53181874 | None:intergenic | 20.0% |
!! | AAAAATGTGGTATAGTTAAA+AGG | + | chr7_4:53181856-53181875 | None:intergenic | 20.0% |
!! | CAAAAATCCAAAAATCTTAA+AGG | + | chr7_4:53182009-53182028 | None:intergenic | 20.0% |
!!! | CTTTAAGATTTTTGGATTTT+TGG | - | chr7_4:53182007-53182026 | Msa1162480:CDS | 20.0% |
!! | CATATCAAAATCTTCATATT+TGG | - | chr7_4:53182050-53182069 | Msa1162480:CDS | 20.0% |
!! | AATTCTCTGATAATTATATG+AGG | + | chr7_4:53182752-53182771 | None:intergenic | 20.0% |
!! | AGTTAACTAGTTAGATAATT+AGG | - | chr7_4:53183060-53183079 | Msa1162480:intron | 20.0% |
!! | TAATTCCTAAGGTAAAAAAT+GGG | - | chr7_4:53183430-53183449 | Msa1162480:intron | 20.0% |
!!! | CCAAAAGTATATTTTATAGT+TGG | + | chr7_4:53183571-53183590 | None:intergenic | 20.0% |
!!! | CCAACTATAAAATATACTTT+TGG | - | chr7_4:53183568-53183587 | Msa1162480:intron | 20.0% |
!! | ATTGTCAAAATAAAAAAGTC+AGG | + | chr7_4:53184278-53184297 | None:intergenic | 20.0% |
!! | TTTCTTCAGTTATTTGTTTA+AGG | - | chr7_4:53184485-53184504 | Msa1162480:intron | 20.0% |
!! | AAAAATTATGCATTGTTACT+GGG | + | chr7_4:53184724-53184743 | None:intergenic | 20.0% |
!! | TAAAAATTATGCATTGTTAC+TGG | + | chr7_4:53184725-53184744 | None:intergenic | 20.0% |
!! | TTTCTCTATTCACCTTTTTA+GGG | - | chr7_4:53181814-53181833 | Msa1162480:three_prime_UTR | 25.0% |
! | AAATGTGGTATAGTTAAAAG+GGG | + | chr7_4:53181854-53181873 | None:intergenic | 25.0% |
! | AAGAAGATTGTTGAAAAATG+TGG | + | chr7_4:53181869-53181888 | None:intergenic | 25.0% |
! | TTGAACAATGAAATTGATAG+TGG | + | chr7_4:53181960-53181979 | None:intergenic | 25.0% |
! | AAATCCAAAAATCTTAAAGG+TGG | + | chr7_4:53182006-53182025 | None:intergenic | 25.0% |
!!! | TGGATTTTTGGATTTCAATT+TGG | - | chr7_4:53182019-53182038 | Msa1162480:CDS | 25.0% |
! | ACGATAATGTTACAAAACAA+TGG | + | chr7_4:53182291-53182310 | None:intergenic | 25.0% |
! | ACATGAGTAATTAGTAAAAG+TGG | - | chr7_4:53182314-53182333 | Msa1162480:intron | 25.0% |
!! | ATCACTCACAAAAACTTTTA+AGG | - | chr7_4:53182449-53182468 | Msa1162480:intron | 25.0% |
!! | TCACTCACAAAAACTTTTAA+GGG | - | chr7_4:53182450-53182469 | Msa1162480:intron | 25.0% |
!! | ATTAGAACTTTGAAGATGAT+GGG | - | chr7_4:53182573-53182592 | Msa1162480:intron | 25.0% |
! | CTGATAATTATATGAGGAAA+GGG | + | chr7_4:53182746-53182765 | None:intergenic | 25.0% |
! | TCTGATAATTATATGAGGAA+AGG | + | chr7_4:53182747-53182766 | None:intergenic | 25.0% |
! | TCCATAATATAATTCAGAAG+TGG | - | chr7_4:53182880-53182899 | Msa1162480:intron | 25.0% |
! | ACCACTTCTGAATTATATTA+TGG | + | chr7_4:53182884-53182903 | None:intergenic | 25.0% |
! | TCAAAAGGAAGAAAAAACAA+TGG | + | chr7_4:53182940-53182959 | None:intergenic | 25.0% |
! | AATGAGTTAATCATGTCAAA+AGG | + | chr7_4:53182955-53182974 | None:intergenic | 25.0% |
! | TTAAAGTAACACTTGTATGA+CGG | - | chr7_4:53183008-53183027 | Msa1162480:intron | 25.0% |
! | GTAATTCCTAAGGTAAAAAA+TGG | - | chr7_4:53183429-53183448 | Msa1162480:intron | 25.0% |
!!! | TTTAACCCATTTTTTACCTT+AGG | + | chr7_4:53183438-53183457 | None:intergenic | 25.0% |
!!! | TAAAAAATGGGTTAAAAGAC+TGG | - | chr7_4:53183442-53183461 | Msa1162480:intron | 25.0% |
! | AAATGGTATATGTACAGAAA+CGG | - | chr7_4:53183648-53183667 | Msa1162480:intron | 25.0% |
! | CAATAAAGAGAAAGAAATGA+AGG | + | chr7_4:53184031-53184050 | None:intergenic | 25.0% |
!! | TAGTTCTATTGATATATTCC+CGG | - | chr7_4:53184060-53184079 | Msa1162480:CDS | 25.0% |
! | CTACTAAGGTAATTATAGAA+TGG | + | chr7_4:53184090-53184109 | None:intergenic | 25.0% |
! | TAACACACAAGAAACATTTA+GGG | + | chr7_4:53184427-53184446 | None:intergenic | 25.0% |
! | TTAACACACAAGAAACATTT+AGG | + | chr7_4:53184428-53184447 | None:intergenic | 25.0% |
! | ACAGCTTACAAAAGAAAATA+TGG | + | chr7_4:53184849-53184868 | None:intergenic | 25.0% |
! | GTAGTATTATGTAAAGGTTA+TGG | + | chr7_4:53184934-53184953 | None:intergenic | 25.0% |
! | TGACTAGTAGTATTATGTAA+AGG | + | chr7_4:53184940-53184959 | None:intergenic | 25.0% |
!! | TATGATATCTGAAGTCTTAA+AGG | - | chr7_4:53185065-53185084 | Msa1162480:five_prime_UTR | 25.0% |
TTTGTAAGCAAGAGTAGTAT+CGG | - | chr7_4:53181674-53181693 | Msa1162480:three_prime_UTR | 30.0% | |
! | CTTTTCGATTTCTCTTTTTC+AGG | - | chr7_4:53181751-53181770 | Msa1162480:three_prime_UTR | 30.0% |
! | GTTTCTCTATTCACCTTTTT+AGG | - | chr7_4:53181813-53181832 | Msa1162480:three_prime_UTR | 30.0% |
AATGTGGTATAGTTAAAAGG+GGG | + | chr7_4:53181853-53181872 | None:intergenic | 30.0% | |
ACATAAGCCGAATTGTAAAA+CGG | + | chr7_4:53181925-53181944 | None:intergenic | 30.0% | |
!!! | ATTCGGCTTATGTTATTTTC+TGG | - | chr7_4:53181932-53181951 | Msa1162480:three_prime_UTR | 30.0% |
!!! | TTCTCCACCTTTAAGATTTT+TGG | - | chr7_4:53181999-53182018 | Msa1162480:exon | 30.0% |
CAATAAGGTGCAACAAATTA+AGG | + | chr7_4:53182084-53182103 | None:intergenic | 30.0% | |
ACATAAGTGCTTATGCAATA+AGG | + | chr7_4:53182099-53182118 | None:intergenic | 30.0% | |
TACAAAACAATGGACATGTT+TGG | + | chr7_4:53182281-53182300 | None:intergenic | 30.0% | |
! | TTTAAGCCTTCTATTCCTTT+TGG | - | chr7_4:53182356-53182375 | Msa1162480:intron | 30.0% |
! | TTAAGCCTTCTATTCCTTTT+GGG | - | chr7_4:53182357-53182376 | Msa1162480:intron | 30.0% |
AAATTCCCAAAAGGAATAGA+AGG | + | chr7_4:53182365-53182384 | None:intergenic | 30.0% | |
!! | TCCTTTTGGGAATTTTTTGT+TGG | - | chr7_4:53182370-53182389 | Msa1162480:intron | 30.0% |
ACCAACAAAAAATTCCCAAA+AGG | + | chr7_4:53182374-53182393 | None:intergenic | 30.0% | |
!! | TTGGTTTGCAGAGATTATAA+TGG | - | chr7_4:53182389-53182408 | Msa1162480:intron | 30.0% |
! | GATTAGAACTTTGAAGATGA+TGG | - | chr7_4:53182572-53182591 | Msa1162480:intron | 30.0% |
TAGTAGATAAGCATCATATG+AGG | - | chr7_4:53182903-53182922 | Msa1162480:intron | 30.0% | |
CTAGTTAACTACCTAATAAC+AGG | + | chr7_4:53183050-53183069 | None:intergenic | 30.0% | |
ACTTATGATTACGAAATGTC+AGG | + | chr7_4:53183207-53183226 | None:intergenic | 30.0% | |
TAATTGAGTAATTGTGAGTC+AGG | + | chr7_4:53183232-53183251 | None:intergenic | 30.0% | |
ATGAGAATGAGTAATTCCTA+AGG | - | chr7_4:53183419-53183438 | Msa1162480:intron | 30.0% | |
AAGATTGCAAGTTAGATTGT+AGG | + | chr7_4:53183535-53183554 | None:intergenic | 30.0% | |
!! | TATACTTTTGGTGTACTGAT+TGG | - | chr7_4:53183580-53183599 | Msa1162480:intron | 30.0% |
TTCTCTTCTAGACATAGATT+GGG | + | chr7_4:53183623-53183642 | None:intergenic | 30.0% | |
TTTCTCTTCTAGACATAGAT+TGG | + | chr7_4:53183624-53183643 | None:intergenic | 30.0% | |
TCTAGAAGAGAAAGAAGAAA+TGG | - | chr7_4:53183631-53183650 | Msa1162480:intron | 30.0% | |
AATGGTATATGTACAGAAAC+GGG | - | chr7_4:53183649-53183668 | Msa1162480:intron | 30.0% | |
AGCATTATGGAAATAACTCT+GGG | + | chr7_4:53183923-53183942 | None:intergenic | 30.0% | |
AAGCATTATGGAAATAACTC+TGG | + | chr7_4:53183924-53183943 | None:intergenic | 30.0% | |
! | ATAATGCTTTTGTGAAACAC+CGG | - | chr7_4:53183935-53183954 | Msa1162480:intron | 30.0% |
GCAGTGTATATTATAGAATC+CGG | + | chr7_4:53183957-53183976 | None:intergenic | 30.0% | |
AGTTCTATTGATATATTCCC+GGG | - | chr7_4:53184061-53184080 | Msa1162480:CDS | 30.0% | |
TAATTATAGAATGGTTTCCC+GGG | + | chr7_4:53184081-53184100 | None:intergenic | 30.0% | |
GTAATTATAGAATGGTTTCC+CGG | + | chr7_4:53184082-53184101 | None:intergenic | 30.0% | |
! | TGTGTGTGTTTCTATGTATT+GGG | - | chr7_4:53184149-53184168 | Msa1162480:CDS | 30.0% |
AAGACTTCACAAAATGAATG+CGG | + | chr7_4:53184197-53184216 | None:intergenic | 30.0% | |
! | TAGAAGGCTTGTAGATTTTA+TGG | - | chr7_4:53184249-53184268 | Msa1162480:CDS | 30.0% |
! | TTGTGCTCTTTTATTATCAG+TGG | - | chr7_4:53184298-53184317 | Msa1162480:CDS | 30.0% |
TATGAGTTATGTGATTTCAG+TGG | - | chr7_4:53184327-53184346 | Msa1162480:intron | 30.0% | |
! | ATACATGGACTAAAGTACAA+TGG | + | chr7_4:53184389-53184408 | None:intergenic | 30.0% |
TACTTTAGTCCATGTATTCA+AGG | - | chr7_4:53184392-53184411 | Msa1162480:intron | 30.0% | |
AACACACAAGAAACATTTAG+GGG | + | chr7_4:53184426-53184445 | None:intergenic | 30.0% | |
TTTGTTTAAGGAGCTCTATA+TGG | - | chr7_4:53184497-53184516 | Msa1162480:intron | 30.0% | |
TAACAAGCTTTGCATAATGT+CGG | - | chr7_4:53184556-53184575 | Msa1162480:intron | 30.0% | |
TTCCCTTCATCATGTTTAAA+AGG | + | chr7_4:53184670-53184689 | None:intergenic | 30.0% | |
! | TTTTAAACATGATGAAGGGA+AGG | - | chr7_4:53184669-53184688 | Msa1162480:intron | 30.0% |
TGAAATGTCTTTGGTCATAA+AGG | + | chr7_4:53184757-53184776 | None:intergenic | 30.0% | |
CAATGAACTTGAAATGTCTT+TGG | + | chr7_4:53184766-53184785 | None:intergenic | 30.0% | |
!! | CAAAGACATTTCAAGTTCAT+TGG | - | chr7_4:53184764-53184783 | Msa1162480:intron | 30.0% |
!! | TTTGTTGAGTTGGAATTACA+TGG | - | chr7_4:53184819-53184838 | Msa1162480:intron | 30.0% |
ACACATCATCGTACATTTAT+TGG | + | chr7_4:53184893-53184912 | None:intergenic | 30.0% | |
TGTACGATGATGTGTTAATT+TGG | - | chr7_4:53184898-53184917 | Msa1162480:intron | 30.0% | |
ATGAATACTATACATGAAGC+TGG | - | chr7_4:53184983-53185002 | Msa1162480:five_prime_UTR | 30.0% | |
! | CTATGCTCCGTTTTACAATT+CGG | - | chr7_4:53181915-53181934 | Msa1162480:three_prime_UTR | 35.0% |
AAGCACTATTGTGTCTGTTT+AGG | + | chr7_4:53182228-53182247 | None:intergenic | 35.0% | |
GAATAGAAGGCTTAAACACT+CGG | + | chr7_4:53182352-53182371 | None:intergenic | 35.0% | |
ATGAAGAGGGATCTTGTAAA+TGG | - | chr7_4:53182669-53182688 | Msa1162480:intron | 35.0% | |
AGATAAGCATCATATGAGGA+AGG | - | chr7_4:53182907-53182926 | Msa1162480:intron | 35.0% | |
TCATTGTGCTAAATTGCTAC+TGG | - | chr7_4:53182970-53182989 | Msa1162480:intron | 35.0% | |
AAGTAGGATCTTGACAACTT+TGG | + | chr7_4:53183094-53183113 | None:intergenic | 35.0% | |
AAGTTGTCAAGATCCTACTT+AGG | - | chr7_4:53183094-53183113 | Msa1162480:intron | 35.0% | |
CACAATTACTCAATTAGCAC+TGG | - | chr7_4:53183236-53183255 | Msa1162480:intron | 35.0% | |
TTTATGATCTTACGACCACT+GGG | + | chr7_4:53183502-53183521 | None:intergenic | 35.0% | |
! | TTTTATGATCTTACGACCAC+TGG | + | chr7_4:53183503-53183522 | None:intergenic | 35.0% |
ATATGTACAGAAACGGGAAT+AGG | - | chr7_4:53183655-53183674 | Msa1162480:intron | 35.0% | |
! | TTAGTGGATAGTTGTGTTAG+AGG | - | chr7_4:53183685-53183704 | Msa1162480:intron | 35.0% |
! | TAGTGGATAGTTGTGTTAGA+GGG | - | chr7_4:53183686-53183705 | Msa1162480:intron | 35.0% |
CGCTGTAACATGATTATGAA+GGG | - | chr7_4:53183735-53183754 | Msa1162480:intron | 35.0% | |
TATGAAGGGTAGATGATGTT+TGG | - | chr7_4:53183749-53183768 | Msa1162480:intron | 35.0% | |
ATGAAGGGTAGATGATGTTT+GGG | - | chr7_4:53183750-53183769 | Msa1162480:intron | 35.0% | |
ACACTGCAGCAATGAAATAT+AGG | + | chr7_4:53183880-53183899 | None:intergenic | 35.0% | |
!! | GGTGTTTCACAAAAGCATTA+TGG | + | chr7_4:53183936-53183955 | None:intergenic | 35.0% |
TTACCTTAGTAGTGCATCTT+TGG | - | chr7_4:53184098-53184117 | Msa1162480:CDS | 35.0% | |
AGCAAGAAATTATCACCTTG+TGG | - | chr7_4:53184123-53184142 | Msa1162480:CDS | 35.0% | |
! | GTGTGTGTGTTTCTATGTAT+TGG | - | chr7_4:53184148-53184167 | Msa1162480:CDS | 35.0% |
! | GTGAAGTCTTATGTCGTTTA+AGG | - | chr7_4:53184207-53184226 | Msa1162480:CDS | 35.0% |
TCATAGAACCTCAACATAGA+AGG | - | chr7_4:53184233-53184252 | Msa1162480:CDS | 35.0% | |
TTTGTAGCAACTAGCAAGAA+AGG | + | chr7_4:53184360-53184379 | None:intergenic | 35.0% | |
ACAAGAAACATTTAGGGGTT+AGG | + | chr7_4:53184421-53184440 | None:intergenic | 35.0% | |
! | CATAATGTCGGTTATACTGT+AGG | - | chr7_4:53184568-53184587 | Msa1162480:intron | 35.0% |
!!! | ATCTGCAGTCATTGATTTTG+CGG | - | chr7_4:53184639-53184658 | Msa1162480:intron | 35.0% |
TTCATCATGTTTAAAAGGCG+TGG | + | chr7_4:53184665-53184684 | None:intergenic | 35.0% | |
! | ACGCCTTTTAAACATGATGA+AGG | - | chr7_4:53184664-53184683 | Msa1162480:intron | 35.0% |
! | CGCCTTTTAAACATGATGAA+GGG | - | chr7_4:53184665-53184684 | Msa1162480:intron | 35.0% |
ATTCCAACTCAACAAACAAC+TGG | + | chr7_4:53184815-53184834 | None:intergenic | 35.0% | |
TACTAGTCAACATTCTTCCA+TGG | - | chr7_4:53184951-53184970 | Msa1162480:intron | 35.0% | |
ACTAGTCAACATTCTTCCAT+GGG | - | chr7_4:53184952-53184971 | Msa1162480:intron | 35.0% | |
GTATTCATCAATTCATCCCA+TGG | + | chr7_4:53184971-53184990 | None:intergenic | 35.0% | |
TCTTAAAGGTGGAGAAACTG+TGG | + | chr7_4:53181995-53182014 | None:intergenic | 40.0% | |
!! | ACTTTTAAGGGTGCAACAAC+TGG | - | chr7_4:53182462-53182481 | Msa1162480:intron | 40.0% |
TTTAGTTGCTGGCACTATCT+GGG | - | chr7_4:53182485-53182504 | Msa1162480:intron | 40.0% | |
! | TTCAAAGTTCTAATCAGCCC+CGG | + | chr7_4:53182567-53182586 | None:intergenic | 40.0% |
!! | AGAACTTTGAAGATGATGGG+TGG | - | chr7_4:53182576-53182595 | Msa1162480:intron | 40.0% |
!! | GATCTTGTAAATGGTGCTGT+TGG | - | chr7_4:53182678-53182697 | Msa1162480:intron | 40.0% |
GCAACTATTCTTGGTTACAG+AGG | - | chr7_4:53182717-53182736 | Msa1162480:intron | 40.0% | |
GGAGTATGTCACCTGTTATT+AGG | - | chr7_4:53183036-53183055 | Msa1162480:intron | 40.0% | |
TTGTGCATTCTCAAAGCTTC+TGG | + | chr7_4:53183303-53183322 | None:intergenic | 40.0% | |
TTGAGAATGCACAAGTAGAG+AGG | - | chr7_4:53183309-53183328 | Msa1162480:intron | 40.0% | |
AGGAAGAGAAGTAATTGCTG+AGG | - | chr7_4:53183355-53183374 | Msa1162480:intron | 40.0% | |
GGAAGAGAAGTAATTGCTGA+GGG | - | chr7_4:53183356-53183375 | Msa1162480:intron | 40.0% | |
GAAGAGAAGTAATTGCTGAG+GGG | - | chr7_4:53183357-53183376 | Msa1162480:intron | 40.0% | |
AAGAGAAGTAATTGCTGAGG+GGG | - | chr7_4:53183358-53183377 | Msa1162480:intron | 40.0% | |
GCGCTGTAACATGATTATGA+AGG | - | chr7_4:53183734-53183753 | Msa1162480:intron | 40.0% | |
TGAAGGGTAGATGATGTTTG+GGG | - | chr7_4:53183751-53183770 | Msa1162480:intron | 40.0% | |
TTGCTGCAGTGTTCTGTAAT+TGG | - | chr7_4:53183888-53183907 | Msa1162480:intron | 40.0% | |
TGCTGCAGTGTTCTGTAATT+GGG | - | chr7_4:53183889-53183908 | Msa1162480:intron | 40.0% | |
TAGCCAAAGATGCACTACTA+AGG | + | chr7_4:53184104-53184123 | None:intergenic | 40.0% | |
! | GTGTGTTTCTATGTATTGGG+AGG | - | chr7_4:53184152-53184171 | Msa1162480:CDS | 40.0% |
! | TGTTTCTATGTATTGGGAGG+AGG | - | chr7_4:53184155-53184174 | Msa1162480:CDS | 40.0% |
CTTCACAAAATGAATGCGGA+TGG | + | chr7_4:53184193-53184212 | None:intergenic | 40.0% | |
TCTACAAGCCTTCTATGTTG+AGG | + | chr7_4:53184244-53184263 | None:intergenic | 40.0% | |
GTTAGGCATCCTTGAATACA+TGG | + | chr7_4:53184404-53184423 | None:intergenic | 40.0% | |
! | ATGTCGGTTATACTGTAGGA+AGG | - | chr7_4:53184572-53184591 | Msa1162480:intron | 40.0% |
ATCTCAACTGCAATTTCTGC+CGG | - | chr7_4:53184598-53184617 | Msa1162480:intron | 40.0% | |
CAGAAGAATTCTGCGAAGTG+TGG | - | chr7_4:53181702-53181721 | Msa1162480:three_prime_UTR | 45.0% | |
AAGAATTCTGCGAAGTGTGG+AGG | - | chr7_4:53181705-53181724 | Msa1162480:three_prime_UTR | 45.0% | |
CTACAACTCCAAACTCTGAG+CGG | + | chr7_4:53181731-53181750 | None:intergenic | 45.0% | |
AGGTGGAGAAACTGTGGTAT+TGG | + | chr7_4:53181989-53182008 | None:intergenic | 45.0% | |
!! | TAATGGACTCAGCAGAACGT+AGG | - | chr7_4:53182406-53182425 | Msa1162480:intron | 45.0% |
! | GCAACAACTGGTTTAGTTGC+TGG | - | chr7_4:53182474-53182493 | Msa1162480:intron | 45.0% |
GTTTAGTTGCTGGCACTATC+TGG | - | chr7_4:53182484-53182503 | Msa1162480:intron | 45.0% | |
TTAGTTGCTGGCACTATCTG+GGG | - | chr7_4:53182486-53182505 | Msa1162480:intron | 45.0% | |
!! | TTGAAGATGATGGGTGGCTA+TGG | - | chr7_4:53182582-53182601 | Msa1162480:intron | 45.0% |
TATGTAGACTCCTCCTATGG+CGG | + | chr7_4:53182619-53182638 | None:intergenic | 45.0% | |
CCATAGGAGGAGTCTACATA+GGG | - | chr7_4:53182619-53182638 | Msa1162480:intron | 45.0% | |
CATAGGAGGAGTCTACATAG+GGG | - | chr7_4:53182620-53182639 | Msa1162480:intron | 45.0% | |
TGCAGAACTACAGGATGAAG+AGG | - | chr7_4:53182655-53182674 | Msa1162480:intron | 45.0% | |
GCAGAACTACAGGATGAAGA+GGG | - | chr7_4:53182656-53182675 | Msa1162480:intron | 45.0% | |
!! | CTTGTAAATGGTGCTGTTGG+TGG | - | chr7_4:53182681-53182700 | Msa1162480:intron | 45.0% |
GTTGCTGGTGCAACTATTCT+TGG | - | chr7_4:53182708-53182727 | Msa1162480:intron | 45.0% | |
AACACTTGTATGACGGTTGC+TGG | - | chr7_4:53183015-53183034 | Msa1162480:intron | 45.0% | |
GGATCTTGACAACTTTGGCT+GGG | + | chr7_4:53183089-53183108 | None:intergenic | 45.0% | |
AGGATCTTGACAACTTTGGC+TGG | + | chr7_4:53183090-53183109 | None:intergenic | 45.0% | |
AGATCCTACTTAGGATCGTG+AGG | - | chr7_4:53183103-53183122 | Msa1162480:intron | 45.0% | |
TCTCAAAGCTTCTGGTAGCA+GGG | + | chr7_4:53183295-53183314 | None:intergenic | 45.0% | |
TTCTCAAAGCTTCTGGTAGC+AGG | + | chr7_4:53183296-53183315 | None:intergenic | 45.0% | |
TGCACAAGTAGAGAGGAACT+TGG | - | chr7_4:53183316-53183335 | Msa1162480:intron | 45.0% | |
GCACAAGTAGAGAGGAACTT+GGG | - | chr7_4:53183317-53183336 | Msa1162480:intron | 45.0% | |
AAGTAGAGAGGAACTTGGGA+GGG | - | chr7_4:53183321-53183340 | Msa1162480:intron | 45.0% | |
! | TTGCGAGTTAGTTTACCCAG+TGG | - | chr7_4:53183484-53183503 | Msa1162480:intron | 45.0% |
GGGAATAGGAACTCAGTTAG+TGG | - | chr7_4:53183669-53183688 | Msa1162480:intron | 45.0% | |
GAAACACACACACAACCACA+AGG | + | chr7_4:53184141-53184160 | None:intergenic | 45.0% | |
TGAAGAAACTCGCAGCATGA+GGG | + | chr7_4:53184473-53184492 | None:intergenic | 45.0% | |
AATTTCTGCCGGATCAGCAT+TGG | - | chr7_4:53184609-53184628 | Msa1162480:intron | 45.0% | |
TGTGAAAGCCAATGCTGATC+CGG | + | chr7_4:53184620-53184639 | None:intergenic | 45.0% | |
! | GAGCCAGTTGTTTGTTGAGT+TGG | - | chr7_4:53184809-53184828 | Msa1162480:intron | 45.0% |
AGCAGAACGTAGGTACTTCG+AGG | - | chr7_4:53182416-53182435 | Msa1162480:intron | 50.0% | |
ACGTAGGTACTTCGAGGATG+AGG | - | chr7_4:53182422-53182441 | Msa1162480:intron | 50.0% | |
ACGAGGAACATCATACCAGG+TGG | + | chr7_4:53182523-53182542 | None:intergenic | 50.0% | |
GACACGAGGAACATCATACC+AGG | + | chr7_4:53182526-53182545 | None:intergenic | 50.0% | |
!! | CGAGAGAAGTGTTGCTCTTC+CGG | - | chr7_4:53182545-53182564 | Msa1162480:intron | 50.0% |
!! | GAGAGAAGTGTTGCTCTTCC+GGG | - | chr7_4:53182546-53182565 | Msa1162480:intron | 50.0% |
!! | AGAGAAGTGTTGCTCTTCCG+GGG | - | chr7_4:53182547-53182566 | Msa1162480:intron | 50.0% |
GCCATAGGAGGAGTCTACAT+AGG | - | chr7_4:53182618-53182637 | Msa1162480:intron | 50.0% | |
CCCTATGTAGACTCCTCCTA+TGG | + | chr7_4:53182622-53182641 | None:intergenic | 50.0% | |
AGTCTACATAGGGGTGGAAC+AGG | - | chr7_4:53182629-53182648 | Msa1162480:intron | 50.0% | |
AACAGGTGGTGCAGAACTAC+AGG | - | chr7_4:53182646-53182665 | Msa1162480:intron | 50.0% | |
!! | GCTGTTGGTGGATTTGTTGC+TGG | - | chr7_4:53182693-53182712 | Msa1162480:intron | 50.0% |
TCCTACTTAGGATCGTGAGG+AGG | - | chr7_4:53183106-53183125 | Msa1162480:intron | 50.0% | |
CCTACTTAGGATCGTGAGGA+GGG | - | chr7_4:53183107-53183126 | Msa1162480:intron | 50.0% | |
!! | GTAGTGGGTCAAGGGTGATA+GGG | + | chr7_4:53183262-53183281 | None:intergenic | 50.0% |
!! | TGTAGTGGGTCAAGGGTGAT+AGG | + | chr7_4:53183263-53183282 | None:intergenic | 50.0% |
!! | GTGCTTGTGTAGTGGGTCAA+GGG | + | chr7_4:53183270-53183289 | None:intergenic | 50.0% |
!! | TGTGCTTGTGTAGTGGGTCA+AGG | + | chr7_4:53183271-53183290 | None:intergenic | 50.0% |
CAAGTAGAGAGGAACTTGGG+AGG | - | chr7_4:53183320-53183339 | Msa1162480:intron | 50.0% | |
CTGATTGGACCGTGACAAAC+AGG | - | chr7_4:53183595-53183614 | Msa1162480:intron | 50.0% | |
GATTGGGAGCCTGTTTGTCA+CGG | + | chr7_4:53183607-53183626 | None:intergenic | 50.0% | |
! | AGGGTTAGTGATGCAGACTC+TGG | - | chr7_4:53183705-53183724 | Msa1162480:intron | 50.0% |
! | GGGTTAGTGATGCAGACTCT+GGG | - | chr7_4:53183706-53183725 | Msa1162480:intron | 50.0% |
GGTAGATGATGTTTGGGGAG+CGG | - | chr7_4:53183756-53183775 | Msa1162480:intron | 50.0% | |
GTAGATGATGTTTGGGGAGC+GGG | - | chr7_4:53183757-53183776 | Msa1162480:intron | 50.0% | |
TAGATGATGTTTGGGGAGCG+GGG | - | chr7_4:53183758-53183777 | Msa1162480:intron | 50.0% | |
CTGAAGAAACTCGCAGCATG+AGG | + | chr7_4:53184474-53184493 | None:intergenic | 50.0% | |
AAGCTGGCGCAGTAGAACTA+GGG | - | chr7_4:53184999-53185018 | Msa1162480:five_prime_UTR | 50.0% | |
GCAACACTTCTCTCGACACG+AGG | + | chr7_4:53182540-53182559 | None:intergenic | 55.0% | |
AGGAGGAGTCTACATAGGGG+TGG | - | chr7_4:53182623-53182642 | Msa1162480:intron | 55.0% | |
CTACATAGGGGTGGAACAGG+TGG | - | chr7_4:53182632-53182651 | Msa1162480:intron | 55.0% | |
CCCTCCTCACGATCCTAAGT+AGG | + | chr7_4:53183110-53183129 | None:intergenic | 55.0% | |
CAGGGCTGTGCTTGTGTAGT+GGG | + | chr7_4:53183277-53183296 | None:intergenic | 55.0% | |
AGAGGAACTTGGGAGGGATG+AGG | - | chr7_4:53183327-53183346 | Msa1162480:intron | 55.0% | |
TTGGGAGGGATGAGGTTGAG+AGG | - | chr7_4:53183335-53183354 | Msa1162480:intron | 55.0% | |
AGATGATGTTTGGGGAGCGG+GGG | - | chr7_4:53183759-53183778 | Msa1162480:intron | 55.0% | |
GCAAAGTCTCCTCCACCCAA+TGG | + | chr7_4:53183791-53183810 | None:intergenic | 55.0% | |
GAAGCTGGCGCAGTAGAACT+AGG | - | chr7_4:53184998-53185017 | Msa1162480:five_prime_UTR | 55.0% | |
TGTGGAGGCCGCTCAGAGTT+TGG | - | chr7_4:53181720-53181739 | Msa1162480:three_prime_UTR | 60.0% | |
!! | GGGGTACTGTAGTTGCCACC+TGG | - | chr7_4:53182505-53182524 | Msa1162480:intron | 60.0% |
GACTCCTCCTATGGCGGCAA+AGG | + | chr7_4:53182613-53182632 | None:intergenic | 60.0% | |
GCAGGGCTGTGCTTGTGTAG+TGG | + | chr7_4:53183278-53183297 | None:intergenic | 60.0% | |
GATGATGTTTGGGGAGCGGG+GGG | - | chr7_4:53183760-53183779 | Msa1162480:intron | 60.0% | |
ATGATGTTTGGGGAGCGGGG+GGG | - | chr7_4:53183761-53183780 | Msa1162480:intron | 60.0% | |
GGAGCGACCTTTGCCGCCAT+AGG | - | chr7_4:53182603-53182622 | Msa1162480:intron | 65.0% | |
GCGACCTTTGCCGCCATAGG+AGG | - | chr7_4:53182606-53182625 | Msa1162480:intron | 65.0% | |
TGATGTTTGGGGAGCGGGGG+GGG | - | chr7_4:53183762-53183781 | Msa1162480:intron | 65.0% | |
GATGTTTGGGGAGCGGGGGG+GGG | - | chr7_4:53183763-53183782 | Msa1162480:intron | 70.0% | |
ATGTTTGGGGAGCGGGGGGG+GGG | - | chr7_4:53183764-53183783 | Msa1162480:intron | 70.0% | |
GAGCGGGGGGGGGGTCCATT+GGG | - | chr7_4:53183773-53183792 | Msa1162480:intron | 75.0% | |
GGGGGGGGTCCATTGGGTGG+AGG | - | chr7_4:53183779-53183798 | Msa1162480:intron | 75.0% | |
! | GGAGCGGGGGGGGGGTCCAT+TGG | - | chr7_4:53183772-53183791 | Msa1162480:intron | 80.0% |
! | CGGGGGGGGGGTCCATTGGG+TGG | - | chr7_4:53183776-53183795 | Msa1162480:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 53181631 | 53185114 | 53181631 | ID=Msa1162480;Name=Msa1162480 |
chr7_4 | mRNA | 53181631 | 53185114 | 53181631 | ID=Msa1162480-mRNA-1;Parent=Msa1162480;Name=Msa1162480-mRNA-1;_AED=0.18;_eAED=0.18;_QI=150|1|1|1|0.5|0.33|3|376|159 |
chr7_4 | exon | 53181631 | 53182155 | 53181631 | ID=Msa1162480-mRNA-1:exon:15384;Parent=Msa1162480-mRNA-1 |
chr7_4 | exon | 53184007 | 53184345 | 53184007 | ID=Msa1162480-mRNA-1:exon:15383;Parent=Msa1162480-mRNA-1 |
chr7_4 | exon | 53184973 | 53185114 | 53184973 | ID=Msa1162480-mRNA-1:exon:15382;Parent=Msa1162480-mRNA-1 |
chr7_4 | five_prime_UTR | 53184973 | 53185114 | 53184973 | ID=Msa1162480-mRNA-1:five_prime_utr;Parent=Msa1162480-mRNA-1 |
chr7_4 | five_prime_UTR | 53184338 | 53184345 | 53184338 | ID=Msa1162480-mRNA-1:five_prime_utr;Parent=Msa1162480-mRNA-1 |
chr7_4 | CDS | 53184007 | 53184337 | 53184007 | ID=Msa1162480-mRNA-1:cds;Parent=Msa1162480-mRNA-1 |
chr7_4 | CDS | 53182007 | 53182155 | 53182007 | ID=Msa1162480-mRNA-1:cds;Parent=Msa1162480-mRNA-1 |
chr7_4 | three_prime_UTR | 53181631 | 53182006 | 53181631 | ID=Msa1162480-mRNA-1:three_prime_utr;Parent=Msa1162480-mRNA-1 |
Gene Sequence |
Protein sequence |