Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121400 | XP_003624235.1 | 91.202 | 341 | 22 | 4 | 1 | 339 | 1 | 335 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121400 | sp|Q9T072|BH025_ARATH | 37.445 | 227 | 119 | 6 | 117 | 331 | 109 | 324 | 1.47e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121400 | G7KSG4 | 91.202 | 341 | 22 | 4 | 1 | 339 | 1 | 335 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1121400 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608200 | Msa1121400 | 0.804386 | 2.215202e-49 | -8.615850e-47 |
| Msa0648520 | Msa1121400 | 0.827271 | 1.715273e-54 | -8.615850e-47 |
| Msa0691050 | Msa1121400 | 0.820480 | 6.709952e-53 | -8.615850e-47 |
| Msa1080960 | Msa1121400 | 0.803821 | 2.902658e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121400 | MtrunA17_Chr7g0249811 | 91.202 | 341 | 22 | 4 | 1 | 339 | 1 | 335 | 0.0 | 589 |
| Msa1121400 | MtrunA17_Chr8g0336681 | 44.000 | 250 | 108 | 5 | 114 | 337 | 97 | 340 | 1.01e-56 | 187 |
| Msa1121400 | MtrunA17_Chr4g0002801 | 36.785 | 367 | 162 | 13 | 1 | 333 | 1 | 331 | 6.58e-52 | 174 |
| Msa1121400 | MtrunA17_Chr2g0333621 | 37.110 | 353 | 159 | 9 | 1 | 332 | 1 | 311 | 7.30e-51 | 171 |
| Msa1121400 | MtrunA17_Chr2g0333641 | 35.714 | 350 | 162 | 10 | 1 | 331 | 1 | 306 | 3.50e-50 | 169 |
| Msa1121400 | MtrunA17_Chr4g0002781 | 32.615 | 371 | 191 | 7 | 1 | 333 | 1 | 350 | 3.67e-49 | 168 |
| Msa1121400 | MtrunA17_Chr5g0400661 | 34.940 | 332 | 164 | 11 | 47 | 332 | 9 | 334 | 2.42e-43 | 152 |
| Msa1121400 | MtrunA17_Chr5g0400621 | 40.476 | 210 | 104 | 4 | 140 | 334 | 128 | 331 | 1.10e-39 | 142 |
| Msa1121400 | MtrunA17_Chr2g0333611 | 42.553 | 188 | 98 | 3 | 156 | 336 | 35 | 219 | 3.29e-39 | 138 |
| Msa1121400 | MtrunA17_Chr5g0400671 | 42.857 | 175 | 94 | 1 | 164 | 332 | 149 | 323 | 4.59e-39 | 140 |
| Msa1121400 | MtrunA17_Chr4g0049331 | 44.262 | 183 | 93 | 2 | 155 | 328 | 121 | 303 | 9.21e-39 | 139 |
| Msa1121400 | MtrunA17_Chr6g0468491 | 39.301 | 229 | 122 | 5 | 114 | 328 | 80 | 305 | 2.02e-38 | 139 |
| Msa1121400 | MtrunA17_Chr4g0054561 | 44.767 | 172 | 88 | 2 | 167 | 331 | 153 | 324 | 2.33e-38 | 139 |
| Msa1121400 | MtrunA17_Chr2g0307131 | 42.021 | 188 | 99 | 2 | 155 | 333 | 166 | 352 | 8.20e-38 | 138 |
| Msa1121400 | MtrunA17_Chr2g0307141 | 42.222 | 180 | 95 | 1 | 168 | 338 | 182 | 361 | 5.70e-37 | 136 |
| Msa1121400 | MtrunA17_Chr4g0054551 | 43.023 | 172 | 91 | 2 | 167 | 331 | 153 | 324 | 1.70e-36 | 134 |
| Msa1121400 | MtrunA17_Chr4g0054581 | 38.500 | 200 | 108 | 2 | 154 | 339 | 183 | 381 | 1.18e-35 | 133 |
| Msa1121400 | MtrunA17_Chr4g0033391 | 39.535 | 172 | 98 | 2 | 168 | 333 | 146 | 317 | 1.37e-34 | 129 |
| Msa1121400 | MtrunA17_Chr7g0225901 | 41.935 | 155 | 81 | 2 | 168 | 313 | 87 | 241 | 2.60e-34 | 126 |
| Msa1121400 | MtrunA17_Chr4g0033291 | 37.799 | 209 | 119 | 4 | 131 | 332 | 120 | 324 | 4.32e-34 | 127 |
| Msa1121400 | MtrunA17_Chr2g0280161 | 39.362 | 188 | 104 | 1 | 151 | 328 | 159 | 346 | 6.54e-34 | 127 |
| Msa1121400 | MtrunA17_Chr2g0333541 | 39.904 | 208 | 99 | 4 | 133 | 328 | 71 | 264 | 3.83e-31 | 118 |
| Msa1121400 | MtrunA17_Chr4g0033281 | 35.349 | 215 | 125 | 5 | 131 | 335 | 118 | 328 | 5.24e-31 | 119 |
| Msa1121400 | MtrunA17_Chr4g0054571 | 34.426 | 244 | 130 | 6 | 116 | 333 | 91 | 330 | 2.85e-30 | 117 |
| Msa1121400 | MtrunA17_Chr5g0400641 | 40.000 | 150 | 81 | 1 | 172 | 312 | 1 | 150 | 2.59e-28 | 107 |
| Msa1121400 | MtrunA17_Chr6g0468461 | 39.873 | 158 | 89 | 2 | 155 | 312 | 160 | 311 | 4.30e-27 | 109 |
| Msa1121400 | MtrunA17_Chr4g0054621 | 29.412 | 238 | 148 | 5 | 100 | 328 | 107 | 333 | 6.62e-26 | 105 |
| Msa1121400 | MtrunA17_Chr4g0002851 | 37.500 | 168 | 93 | 4 | 162 | 328 | 36 | 192 | 2.04e-23 | 95.9 |
| Msa1121400 | MtrunA17_Chr7g0233441 | 38.298 | 141 | 78 | 3 | 192 | 328 | 57 | 192 | 9.86e-23 | 94.0 |
| Msa1121400 | MtrunA17_Chr4g0002831 | 34.054 | 185 | 104 | 4 | 145 | 328 | 33 | 200 | 1.46e-20 | 88.2 |
| Msa1121400 | MtrunA17_Chr8g0336671 | 59.615 | 52 | 18 | 1 | 151 | 202 | 20 | 68 | 9.20e-13 | 63.2 |
| Msa1121400 | MtrunA17_Chr8g0346161 | 26.733 | 202 | 128 | 6 | 133 | 318 | 256 | 453 | 4.30e-12 | 67.0 |
| Msa1121400 | MtrunA17_Chr1g0211081 | 28.302 | 106 | 69 | 1 | 130 | 228 | 271 | 376 | 7.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121400 | AT4G37850.2 | 37.445 | 227 | 119 | 6 | 117 | 331 | 109 | 324 | 1.50e-33 | 126 |
| Msa1121400 | AT4G37850.1 | 37.445 | 227 | 119 | 6 | 117 | 331 | 109 | 324 | 1.50e-33 | 126 |
| Msa1121400 | AT2G22770.1 | 38.974 | 195 | 95 | 2 | 163 | 333 | 126 | 320 | 3.24e-33 | 125 |
| Msa1121400 | AT2G22760.1 | 39.286 | 196 | 99 | 5 | 151 | 328 | 98 | 291 | 1.82e-32 | 123 |
| Msa1121400 | AT2G22750.2 | 42.328 | 189 | 93 | 3 | 154 | 327 | 110 | 297 | 1.95e-30 | 117 |
| Msa1121400 | AT2G22750.3 | 42.328 | 189 | 93 | 3 | 154 | 327 | 138 | 325 | 3.96e-30 | 117 |
| Msa1121400 | AT2G22750.5 | 42.328 | 189 | 93 | 3 | 154 | 327 | 134 | 321 | 4.00e-30 | 117 |
| Msa1121400 | AT2G22750.1 | 42.857 | 189 | 91 | 4 | 154 | 327 | 110 | 296 | 8.17e-30 | 116 |
| Msa1121400 | AT2G22750.4 | 42.857 | 189 | 91 | 4 | 154 | 327 | 138 | 324 | 1.61e-29 | 115 |
| Msa1121400 | AT2G22760.2 | 37.430 | 179 | 93 | 4 | 151 | 312 | 98 | 274 | 5.01e-27 | 108 |
| Msa1121400 | AT4G09820.1 | 31.452 | 124 | 74 | 2 | 170 | 293 | 364 | 476 | 6.64e-15 | 75.9 |
| Msa1121400 | AT5G57150.1 | 29.091 | 165 | 98 | 5 | 170 | 316 | 55 | 218 | 1.29e-12 | 67.4 |
| Msa1121400 | AT5G57150.5 | 29.412 | 153 | 90 | 4 | 170 | 304 | 55 | 207 | 1.81e-12 | 66.2 |
| Msa1121400 | AT5G57150.2 | 29.412 | 153 | 90 | 4 | 170 | 304 | 56 | 208 | 1.94e-12 | 66.2 |
| Msa1121400 | AT5G57150.3 | 29.412 | 153 | 90 | 4 | 170 | 304 | 56 | 208 | 2.10e-12 | 66.2 |
| Msa1121400 | AT5G57150.4 | 27.848 | 158 | 86 | 4 | 170 | 304 | 56 | 208 | 8.40e-12 | 65.1 |
| Msa1121400 | AT4G29930.2 | 26.144 | 153 | 111 | 2 | 170 | 321 | 55 | 206 | 8.45e-12 | 64.7 |
| Msa1121400 | AT5G46760.1 | 24.823 | 141 | 93 | 2 | 169 | 296 | 415 | 555 | 1.53e-11 | 65.9 |
| Msa1121400 | AT4G29930.6 | 26.282 | 156 | 110 | 3 | 170 | 321 | 55 | 209 | 6.96e-11 | 62.0 |
Find 70 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAAAGGGTCACTTTA+AGG | 0.128232 | 7_3:+71474777 | Msa1121400:five_prime_UTR |
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7_3:+71474834 | Msa1121400:CDS |
| TCCAATTGTAATTATAATAA+TGG | 0.258185 | 7_3:+71477632 | Msa1121400:three_prime_UTR |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7_3:+71475262 | Msa1121400:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7_3:+71475216 | Msa1121400:CDS |
| CCATTTCTACTTTGTTTGAT+TGG | 0.302876 | 7_3:+71477675 | Msa1121400:three_prime_UTR |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7_3:+71476427 | Msa1121400:CDS |
| GATTTCCACTTGAATATTGC+TGG | 0.311329 | 7_3:-71476479 | None:intergenic |
| GACAGTGCAAGATCACTTAA+TGG | 0.320859 | 7_3:+71475411 | Msa1121400:CDS |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7_3:+71475486 | Msa1121400:CDS |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7_3:-71475037 | None:intergenic |
| ATTCAAAAGGGTCACTTTAA+GGG | 0.340852 | 7_3:+71474778 | Msa1121400:five_prime_UTR |
| CAATGTCACATAAAACTAAA+AGG | 0.349007 | 7_3:+71475314 | Msa1121400:CDS |
| TCCATTATTATAATTACAAT+TGG | 0.353128 | 7_3:-71477633 | None:intergenic |
| ACTAAAAGGAGGGGTACTAT+AGG | 0.369752 | 7_3:+71475328 | Msa1121400:CDS |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7_3:-71475301 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7_3:-71475027 | None:intergenic |
| GTGCTAGTGCATCAAAATAA+AGG | 0.393481 | 7_3:+71477604 | Msa1121400:three_prime_UTR |
| TATAGTTGTACTATTGTCTT+GGG | 0.399587 | 7_3:-71475080 | None:intergenic |
| CTAAAAGGAGGGGTACTATA+GGG | 0.401026 | 7_3:+71475329 | Msa1121400:CDS |
| CCAATCAAACAAAGTAGAAA+TGG | 0.406606 | 7_3:-71477675 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7_3:+71477555 | Msa1121400:CDS |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7_3:+71476697 | Msa1121400:CDS |
| ACTTAATGGCTGAGAGGAAA+AGG | 0.436984 | 7_3:+71475425 | Msa1121400:CDS |
| TTATAGTTGTACTATTGTCT+TGG | 0.440009 | 7_3:-71475081 | None:intergenic |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7_3:-71475270 | None:intergenic |
| ATAATGGAATGAGGATGTAT+TGG | 0.445940 | 7_3:+71477648 | Msa1121400:three_prime_UTR |
| CTATACCAGTCCAATTCAAA+AGG | 0.448044 | 7_3:+71474765 | Msa1121400:five_prime_UTR |
| AAGGACAAAATACTATTTGT+GGG | 0.455985 | 7_3:-71475130 | None:intergenic |
| AAAGGACAAAATACTATTTG+TGG | 0.457372 | 7_3:-71475131 | None:intergenic |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7_3:-71475218 | None:intergenic |
| AGCAGTACCATGTTACCATT+TGG | 0.468184 | 7_3:+71476662 | Msa1121400:CDS |
| GCACTTGCAGCCATGATACC+TGG | 0.483853 | 7_3:+71475475 | Msa1121400:CDS |
| CTCTCTTCAATTTGCAACAA+TGG | 0.484287 | 7_3:+71474801 | Msa1121400:exon |
| TGCAACAATGGAGGATTCAC+TGG | 0.488783 | 7_3:+71474813 | Msa1121400:exon |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7_3:+71476550 | Msa1121400:CDS |
| GGCTGAGAGGAAAAGGAGAA+GGG | 0.499851 | 7_3:+71475432 | Msa1121400:CDS |
| ACAACTATAATTAATGTTGA+AGG | 0.502660 | 7_3:+71475094 | Msa1121400:CDS |
| AATTCATTGTGAGAAGCAAA+AGG | 0.506739 | 7_3:+71476586 | Msa1121400:CDS |
| TGGCTGAGAGGAAAAGGAGA+AGG | 0.516189 | 7_3:+71475431 | Msa1121400:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7_3:+71477558 | Msa1121400:CDS |
| GAAAGATGAAGCAAGGGTGA+AGG | 0.528465 | 7_3:+71475351 | Msa1121400:CDS |
| GTCACATAAAACTAAAAGGA+GGG | 0.537994 | 7_3:+71475318 | Msa1121400:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7_3:-71475259 | None:intergenic |
| TGGACTGGTATAGGGTAGCT+AGG | 0.544871 | 7_3:-71474755 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7_3:-71475053 | None:intergenic |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7_3:+71477519 | Msa1121400:CDS |
| AATCTCAAGCAGTGATTGTG+AGG | 0.568261 | 7_3:-71476528 | None:intergenic |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7_3:-71475263 | None:intergenic |
| ACAAGAATAGAAGCACCAAA+TGG | 0.574238 | 7_3:-71476677 | None:intergenic |
| GTAATTATAATAATGGAATG+AGG | 0.575299 | 7_3:+71477639 | Msa1121400:three_prime_UTR |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7_3:+71476474 | Msa1121400:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7_3:-71475149 | None:intergenic |
| AATACTATTTGTGGGGCTAG+TGG | 0.580995 | 7_3:-71475122 | None:intergenic |
| TCTTCAATTTGCAACAATGG+AGG | 0.581385 | 7_3:+71474804 | Msa1121400:exon |
| CTATAGGGAAAGATGAAGCA+AGG | 0.582480 | 7_3:+71475344 | Msa1121400:CDS |
| GGTGAAGGAAGCAACAAAGA+AGG | 0.584977 | 7_3:+71475366 | Msa1121400:CDS |
| TATACCAGTCCAATTCAAAA+GGG | 0.597704 | 7_3:+71474766 | Msa1121400:five_prime_UTR |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7_3:-71475052 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7_3:+71477531 | Msa1121400:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7_3:-71474987 | None:intergenic |
| TGTCACATAAAACTAAAAGG+AGG | 0.628863 | 7_3:+71475317 | Msa1121400:CDS |
| AGAAGCACCAAATGGTAACA+TGG | 0.632448 | 7_3:-71476669 | None:intergenic |
| TATAGGGAAAGATGAAGCAA+GGG | 0.632516 | 7_3:+71475345 | Msa1121400:CDS |
| TCACATAAAACTAAAAGGAG+GGG | 0.633390 | 7_3:+71475319 | Msa1121400:CDS |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7_3:-71474990 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7_3:+71477513 | Msa1121400:intron |
| AGGACAAAATACTATTTGTG+GGG | 0.660565 | 7_3:-71475129 | None:intergenic |
| AAGATCACTTAATGGCTGAG+AGG | 0.688160 | 7_3:+71475419 | Msa1121400:CDS |
| TGACCATTAACAAAACAACA+TGG | 0.718867 | 7_3:+71477937 | Msa1121400:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATCATTATTTGTTAAT+TGG | + | chr7_3:71474900-71474919 | Msa1121400:intron | 10.0% |
| !!! | TATATCATTATTTGTTAATT+GGG | + | chr7_3:71474901-71474920 | Msa1121400:intron | 10.0% |
| !!! | ATGATATTTTGATTTTTTTA+GGG | - | chr7_3:71476017-71476036 | None:intergenic | 10.0% |
| !!! | TATGATATTTTGATTTTTTT+AGG | - | chr7_3:71476018-71476037 | None:intergenic | 10.0% |
| !!! | ATTGAAAGATTTTTTATTTT+GGG | - | chr7_3:71477019-71477038 | None:intergenic | 10.0% |
| !!! | AATTGAAAGATTTTTTATTT+TGG | - | chr7_3:71477020-71477039 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATCTTTGATCAT+AGG | + | chr7_3:71474931-71474950 | Msa1121400:intron | 15.0% |
| !! | AAAACTACTTTACAAAATTA+TGG | + | chr7_3:71475704-71475723 | Msa1121400:intron | 15.0% |
| !! | AAACTACTTTACAAAATTAT+GGG | + | chr7_3:71475705-71475724 | Msa1121400:intron | 15.0% |
| !! | GTTTAATTCTGTATTATTAT+CGG | + | chr7_3:71476181-71476200 | Msa1121400:intron | 15.0% |
| !!! | CTATCTTAGTATAATTTTTT+TGG | + | chr7_3:71476254-71476273 | Msa1121400:intron | 15.0% |
| !! | TAGTTTATTATTATATGCAA+GGG | - | chr7_3:71476848-71476867 | None:intergenic | 15.0% |
| !! | ATAGTTTATTATTATATGCA+AGG | - | chr7_3:71476849-71476868 | None:intergenic | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | - | chr7_3:71476920-71476939 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | - | chr7_3:71476921-71476940 | None:intergenic | 15.0% |
| !!! | TTCAAATAAATCAATCATTT+TGG | + | chr7_3:71477207-71477226 | Msa1121400:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | + | chr7_3:71477317-71477336 | Msa1121400:intron | 15.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | + | chr7_3:71477406-71477425 | Msa1121400:intron | 15.0% |
| !! | TCCAATTGTAATTATAATAA+TGG | + | chr7_3:71477632-71477651 | Msa1121400:three_prime_UTR | 15.0% |
| !! | TCCATTATTATAATTACAAT+TGG | - | chr7_3:71477636-71477655 | None:intergenic | 15.0% |
| !! | ACAACTATAATTAATGTTGA+AGG | + | chr7_3:71475094-71475113 | Msa1121400:CDS | 20.0% |
| !! | TAAATAAATTCGTACGATAA+TGG | - | chr7_3:71475587-71475606 | None:intergenic | 20.0% |
| !! | AAAAAAAATTGAGCTTAAAG+TGG | + | chr7_3:71475888-71475907 | Msa1121400:intron | 20.0% |
| !! | AAAAAAATTGAGCTTAAAGT+GGG | + | chr7_3:71475889-71475908 | Msa1121400:intron | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | - | chr7_3:71476340-71476359 | None:intergenic | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | - | chr7_3:71476341-71476360 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | + | chr7_3:71476358-71476377 | Msa1121400:intron | 20.0% |
| !!! | ATTCACTTTTAAAGATGAAT+AGG | + | chr7_3:71476796-71476815 | Msa1121400:intron | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | - | chr7_3:71476914-71476933 | None:intergenic | 20.0% |
| !!! | ACAACTTTTTTTCTTCAAAT+AGG | - | chr7_3:71476996-71477015 | None:intergenic | 20.0% |
| !!! | ATAAATCAATCATTTTGGAA+TGG | + | chr7_3:71477212-71477231 | Msa1121400:intron | 20.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | + | chr7_3:71477555-71477574 | Msa1121400:CDS | 20.0% |
| !!! | GTAATTATAATAATGGAATG+AGG | + | chr7_3:71477639-71477658 | Msa1121400:three_prime_UTR | 20.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | + | chr7_3:71474834-71474853 | Msa1121400:CDS | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | + | chr7_3:71474937-71474956 | Msa1121400:intron | 25.0% |
| ! | TATAGTTGTACTATTGTCTT+GGG | - | chr7_3:71475083-71475102 | None:intergenic | 25.0% |
| ! | TTATAGTTGTACTATTGTCT+TGG | - | chr7_3:71475084-71475103 | None:intergenic | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | - | chr7_3:71475133-71475152 | None:intergenic | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | - | chr7_3:71475134-71475153 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | - | chr7_3:71475152-71475171 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | - | chr7_3:71475316-71475335 | None:intergenic | 25.0% |
| ! | CAATGTCACATAAAACTAAA+AGG | + | chr7_3:71475314-71475333 | Msa1121400:CDS | 25.0% |
| !! | AAGCCAAAACAACTTTTATA+TGG | + | chr7_3:71475762-71475781 | Msa1121400:intron | 25.0% |
| !! | CATCCATATAAAAGTTGTTT+TGG | - | chr7_3:71475768-71475787 | None:intergenic | 25.0% |
| ! | AAAAAATTGAGCTTAAAGTG+GGG | + | chr7_3:71475890-71475909 | Msa1121400:intron | 25.0% |
| !! | TAAAAGTCAATGAAAAGCAT+AGG | - | chr7_3:71476129-71476148 | None:intergenic | 25.0% |
| ! | TATATTGATAAACCTCAATG+TGG | + | chr7_3:71477244-71477263 | Msa1121400:intron | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | + | chr7_3:71477452-71477471 | Msa1121400:intron | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | + | chr7_3:71477453-71477472 | Msa1121400:intron | 25.0% |
| ! | TTTGTCACATTGAAGAAAAA+AGG | + | chr7_3:71477710-71477729 | Msa1121400:three_prime_UTR | 25.0% |
| !!! | TAACCATGTTGTTTTGTTAA+TGG | - | chr7_3:71477943-71477962 | None:intergenic | 25.0% |
| !!! | TTTTGAATTGGACTGGTATA+GGG | - | chr7_3:71474766-71474785 | None:intergenic | 30.0% |
| TATACCAGTCCAATTCAAAA+GGG | + | chr7_3:71474766-71474785 | Msa1121400:five_prime_UTR | 30.0% | |
| ! | TTAAAGTGACCCTTTTGAAT+TGG | - | chr7_3:71474778-71474797 | None:intergenic | 30.0% |
| ! | AATTCAAAAGGGTCACTTTA+AGG | + | chr7_3:71474777-71474796 | Msa1121400:five_prime_UTR | 30.0% |
| ! | ATTCAAAAGGGTCACTTTAA+GGG | + | chr7_3:71474778-71474797 | Msa1121400:five_prime_UTR | 30.0% |
| TTGGAACAAAGATAAGAAGA+GGG | - | chr7_3:71475055-71475074 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | - | chr7_3:71475056-71475075 | None:intergenic | 30.0% | |
| !! | ACTATTGTCTTGGGTTTTAT+TGG | - | chr7_3:71475074-71475093 | None:intergenic | 30.0% |
| AGGACAAAATACTATTTGTG+GGG | - | chr7_3:71475132-71475151 | None:intergenic | 30.0% | |
| !!! | GATGAGACAAGTTTATTTTG+TGG | + | chr7_3:71475154-71475173 | Msa1121400:CDS | 30.0% |
| TTGAGTTACCAAAAGATAGA+AGG | - | chr7_3:71475273-71475292 | None:intergenic | 30.0% | |
| TGTCACATAAAACTAAAAGG+AGG | + | chr7_3:71475317-71475336 | Msa1121400:CDS | 30.0% | |
| GTCACATAAAACTAAAAGGA+GGG | + | chr7_3:71475318-71475337 | Msa1121400:CDS | 30.0% | |
| TCACATAAAACTAAAAGGAG+GGG | + | chr7_3:71475319-71475338 | Msa1121400:CDS | 30.0% | |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | + | chr7_3:71476427-71476446 | Msa1121400:CDS | 30.0% |
| AATTCATTGTGAGAAGCAAA+AGG | + | chr7_3:71476586-71476605 | Msa1121400:CDS | 30.0% | |
| !!! | AATCAATCATTTTGGAATGG+AGG | + | chr7_3:71477215-71477234 | Msa1121400:intron | 30.0% |
| !!! | ATCAATCATTTTGGAATGGA+GGG | + | chr7_3:71477216-71477235 | Msa1121400:intron | 30.0% |
| TGCTTATGTTCACACTAAAA+TGG | + | chr7_3:71477268-71477287 | Msa1121400:intron | 30.0% | |
| ! | ATTTTCTCAGATTTTCCACA+AGG | - | chr7_3:71477549-71477568 | None:intergenic | 30.0% |
| TCTGAGAAAATATCTATTGG+AGG | + | chr7_3:71477558-71477577 | Msa1121400:CDS | 30.0% | |
| !!! | TTTATTTTGATGCACTAGCA+CGG | - | chr7_3:71477605-71477624 | None:intergenic | 30.0% |
| ! | ATAATGGAATGAGGATGTAT+TGG | + | chr7_3:71477648-71477667 | Msa1121400:three_prime_UTR | 30.0% |
| CCAATCAAACAAAGTAGAAA+TGG | - | chr7_3:71477678-71477697 | None:intergenic | 30.0% | |
| ! | CCATTTCTACTTTGTTTGAT+TGG | + | chr7_3:71477675-71477694 | Msa1121400:three_prime_UTR | 30.0% |
| AATGCCACATTGAAGAAAAA+AGG | + | chr7_3:71477756-71477775 | Msa1121400:intron | 30.0% | |
| !!! | ACAACCTTTTTTCTTCAATG+TGG | - | chr7_3:71477763-71477782 | None:intergenic | 30.0% |
| TGACCATTAACAAAACAACA+TGG | + | chr7_3:71477937-71477956 | Msa1121400:three_prime_UTR | 30.0% | |
| !!! | CTTTTGAATTGGACTGGTAT+AGG | - | chr7_3:71474767-71474786 | None:intergenic | 35.0% |
| CTATACCAGTCCAATTCAAA+AGG | + | chr7_3:71474765-71474784 | Msa1121400:five_prime_UTR | 35.0% | |
| CTCTCTTCAATTTGCAACAA+TGG | + | chr7_3:71474801-71474820 | Msa1121400:exon | 35.0% | |
| TCTTCAATTTGCAACAATGG+AGG | + | chr7_3:71474804-71474823 | Msa1121400:exon | 35.0% | |
| AAACTCTTGCTCATCAAATG+TGG | - | chr7_3:71474993-71475012 | None:intergenic | 35.0% | |
| !!! | GAGACAAGTTTATTTTGTGG+TGG | + | chr7_3:71475157-71475176 | Msa1121400:CDS | 35.0% |
| !! | AGTTGGAGCTATTACTTTTG+TGG | - | chr7_3:71475204-71475223 | None:intergenic | 35.0% |
| TTCCAAAGACTTGATTGAGT+TGG | - | chr7_3:71475221-71475240 | None:intergenic | 35.0% | |
| ! | ACCAAAAGATAGAAGGTATG+TGG | - | chr7_3:71475266-71475285 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | - | chr7_3:71475304-71475323 | None:intergenic | 35.0% |
| TATAGGGAAAGATGAAGCAA+GGG | + | chr7_3:71475345-71475364 | Msa1121400:CDS | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | + | chr7_3:71476474-71476493 | Msa1121400:CDS | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | - | chr7_3:71476482-71476501 | None:intergenic | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | + | chr7_3:71476550-71476569 | Msa1121400:CDS | 35.0% | |
| !! | ACAAGAATAGAAGCACCAAA+TGG | - | chr7_3:71476680-71476699 | None:intergenic | 35.0% |
| TGTAATCAACATTTGTGCTC+AGG | + | chr7_3:71476697-71476716 | Msa1121400:CDS | 35.0% | |
| ATTATTATATGCAAGGGTCG+AGG | - | chr7_3:71476842-71476861 | None:intergenic | 35.0% | |
| TAGGTCAATCATTGTGAGAA+GGG | - | chr7_3:71476977-71476996 | None:intergenic | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | - | chr7_3:71476978-71476997 | None:intergenic | 35.0% | |
| GTGCTAGTGCATCAAAATAA+AGG | + | chr7_3:71477604-71477623 | Msa1121400:three_prime_UTR | 35.0% | |
| !! | CACATGATTCTGGTTCTTCA+AGG | - | chr7_3:71475030-71475049 | None:intergenic | 40.0% |
| AATACTATTTGTGGGGCTAG+TGG | - | chr7_3:71475125-71475144 | None:intergenic | 40.0% | |
| CTCCAACTCAATCAAGTCTT+TGG | + | chr7_3:71475216-71475235 | Msa1121400:CDS | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | - | chr7_3:71475262-71475281 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | + | chr7_3:71475262-71475281 | Msa1121400:CDS | 40.0% |
| !! | ACTAAAAGGAGGGGTACTAT+AGG | + | chr7_3:71475328-71475347 | Msa1121400:CDS | 40.0% |
| !! | CTAAAAGGAGGGGTACTATA+GGG | + | chr7_3:71475329-71475348 | Msa1121400:CDS | 40.0% |
| CTATAGGGAAAGATGAAGCA+AGG | + | chr7_3:71475344-71475363 | Msa1121400:CDS | 40.0% | |
| GACAGTGCAAGATCACTTAA+TGG | + | chr7_3:71475411-71475430 | Msa1121400:CDS | 40.0% | |
| AAGATCACTTAATGGCTGAG+AGG | + | chr7_3:71475419-71475438 | Msa1121400:CDS | 40.0% | |
| ACTTAATGGCTGAGAGGAAA+AGG | + | chr7_3:71475425-71475444 | Msa1121400:CDS | 40.0% | |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | - | chr7_3:71475488-71475507 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | + | chr7_3:71475486-71475505 | Msa1121400:CDS | 40.0% |
| !!! | AAGCTAACCTTTTTCAAGCC+AGG | - | chr7_3:71475496-71475515 | None:intergenic | 40.0% |
| AATCTCAAGCAGTGATTGTG+AGG | - | chr7_3:71476531-71476550 | None:intergenic | 40.0% | |
| AGCAGTACCATGTTACCATT+TGG | + | chr7_3:71476662-71476681 | Msa1121400:CDS | 40.0% | |
| !! | AGAAGCACCAAATGGTAACA+TGG | - | chr7_3:71476672-71476691 | None:intergenic | 40.0% |
| ! | AAGACAATTTTATGTCCCGC+GGG | - | chr7_3:71476891-71476910 | None:intergenic | 40.0% |
| ! | GAAGACAATTTTATGTCCCG+CGG | - | chr7_3:71476892-71476911 | None:intergenic | 40.0% |
| AGGTCAATCATTGTGAGAAG+GGG | - | chr7_3:71476976-71476995 | None:intergenic | 40.0% | |
| GAACATAAGCATCCACATTG+AGG | - | chr7_3:71477259-71477278 | None:intergenic | 40.0% | |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | + | chr7_3:71477495-71477514 | Msa1121400:intron | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | - | chr7_3:71477539-71477558 | None:intergenic | 40.0% |
| ! | GTGACCCTTTTGAATTGGAC+TGG | - | chr7_3:71474773-71474792 | None:intergenic | 45.0% |
| TGCAACAATGGAGGATTCAC+TGG | + | chr7_3:71474813-71474832 | Msa1121400:exon | 45.0% | |
| CTCTTGCTCATCAAATGTGG+TGG | - | chr7_3:71474990-71475009 | None:intergenic | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | - | chr7_3:71475040-71475059 | None:intergenic | 45.0% | |
| GAAAGATGAAGCAAGGGTGA+AGG | + | chr7_3:71475351-71475370 | Msa1121400:CDS | 45.0% | |
| GGTGAAGGAAGCAACAAAGA+AGG | + | chr7_3:71475366-71475385 | Msa1121400:CDS | 45.0% | |
| GTCAATCATTGTGAGAAGGG+GGG | - | chr7_3:71476974-71476993 | None:intergenic | 45.0% | |
| GGTCAATCATTGTGAGAAGG+GGG | - | chr7_3:71476975-71476994 | None:intergenic | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | + | chr7_3:71477513-71477532 | Msa1121400:intron | 45.0% | |
| !!! | TATTTTATATCTAAAAAAAA+TGG | + | chr7_3:71475646-71475665 | Msa1121400:intron | 5.0% |
| !!! | ATTTTATATCTAAAAAAAAT+GGG | + | chr7_3:71475647-71475666 | Msa1121400:intron | 5.0% |
| !!! | TAATTTGATTTTTTTTTTTA+AGG | - | chr7_3:71475822-71475841 | None:intergenic | 5.0% |
| !!! | TAAATATACTTTTTTTAAAA+TGG | - | chr7_3:71477344-71477363 | None:intergenic | 5.0% |
| !! | TGGACTGGTATAGGGTAGCT+AGG | - | chr7_3:71474758-71474777 | None:intergenic | 50.0% |
| TGGCTGAGAGGAAAAGGAGA+AGG | + | chr7_3:71475431-71475450 | Msa1121400:CDS | 50.0% | |
| GGCTGAGAGGAAAAGGAGAA+GGG | + | chr7_3:71475432-71475451 | Msa1121400:CDS | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | + | chr7_3:71477519-71477538 | Msa1121400:CDS | 50.0% | |
| GCACTTGCAGCCATGATACC+TGG | + | chr7_3:71475475-71475494 | Msa1121400:CDS | 55.0% | |
| ! | CGGGCATTGCTCAGTTGACA+GGG | - | chr7_3:71476872-71476891 | None:intergenic | 55.0% |
| TGTCAACTGAGCAATGCCCG+CGG | + | chr7_3:71476872-71476891 | Msa1121400:intron | 55.0% | |
| CATGGCCATGGATGACCTTG+TGG | + | chr7_3:71477531-71477550 | Msa1121400:CDS | 55.0% | |
| ! | GCGGGCATTGCTCAGTTGAC+AGG | - | chr7_3:71476873-71476892 | None:intergenic | 60.0% |
| GTCAACTGAGCAATGCCCGC+GGG | + | chr7_3:71476873-71476892 | Msa1121400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 71474755 | 71477971 | 71474755 | ID=Msa1121400;Name=Msa1121400 |
| chr7_3 | mRNA | 71474755 | 71477971 | 71474755 | ID=Msa1121400-mRNA-1;Parent=Msa1121400;Name=Msa1121400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=65|1|1|1|0.75|0.6|5|325|339 |
| chr7_3 | exon | 71474755 | 71474855 | 71474755 | ID=Msa1121400-mRNA-1:exon:18236;Parent=Msa1121400-mRNA-1 |
| chr7_3 | exon | 71474953 | 71475507 | 71474953 | ID=Msa1121400-mRNA-1:exon:18237;Parent=Msa1121400-mRNA-1 |
| chr7_3 | exon | 71476377 | 71476718 | 71476377 | ID=Msa1121400-mRNA-1:exon:18238;Parent=Msa1121400-mRNA-1 |
| chr7_3 | exon | 71477514 | 71477756 | 71477514 | ID=Msa1121400-mRNA-1:exon:18239;Parent=Msa1121400-mRNA-1 |
| chr7_3 | exon | 71477803 | 71477971 | 71477803 | ID=Msa1121400-mRNA-1:exon:18240;Parent=Msa1121400-mRNA-1 |
| chr7_3 | five_prime_UTR | 71474755 | 71474819 | 71474755 | ID=Msa1121400-mRNA-1:five_prime_utr;Parent=Msa1121400-mRNA-1 |
| chr7_3 | CDS | 71474820 | 71474855 | 71474820 | ID=Msa1121400-mRNA-1:cds;Parent=Msa1121400-mRNA-1 |
| chr7_3 | CDS | 71474953 | 71475507 | 71474953 | ID=Msa1121400-mRNA-1:cds;Parent=Msa1121400-mRNA-1 |
| chr7_3 | CDS | 71476377 | 71476718 | 71476377 | ID=Msa1121400-mRNA-1:cds;Parent=Msa1121400-mRNA-1 |
| chr7_3 | CDS | 71477514 | 71477600 | 71477514 | ID=Msa1121400-mRNA-1:cds;Parent=Msa1121400-mRNA-1 |
| chr7_3 | three_prime_UTR | 71477601 | 71477756 | 71477601 | ID=Msa1121400-mRNA-1:three_prime_utr;Parent=Msa1121400-mRNA-1 |
| chr7_3 | three_prime_UTR | 71477803 | 71477971 | 71477803 | ID=Msa1121400-mRNA-1:three_prime_utr;Parent=Msa1121400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
