AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648520 MtrunA17_Chr4g0039981 97.319 858 23 0 1 858 1 858 0.0 1629
Msa0648520 MtrunA17_Chr5g0395261 65.498 884 250 14 2 856 26 883 0.0 987
Msa0648520 MtrunA17_Chr3g0123761 30.682 352 217 5 312 663 83 407 8.87e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648520 AT5G16730.1 52.558 860 357 19 20 858 24 853 0.0 635
Msa0648520 AT3G02930.1 51.336 861 361 15 1 858 1 806 0.0 596
Msa0648520 AT3G02930.2 51.285 856 361 14 6 858 2 804 0.0 596
Msa0648520 AT3G02930.3 51.336 861 361 15 1 858 1 806 0.0 596
Msa0648520 AT1G65010.1 53.120 625 290 2 33 656 30 652 6.17e-175 541
Msa0648520 AT4G27595.1 49.073 701 329 9 1 690 1 684 7.80e-170 525
Msa0648520 AT4G27595.2 49.275 690 328 8 6 690 3 675 7.67e-169 522
Msa0648520 AT4G40020.1 30.469 256 167 2 404 659 123 367 1.21e-13 75.1
Msa0648520 AT2G37080.1 32.461 191 97 7 17 206 17 176 1.13e-12 72.0
Msa0648520 AT2G37080.2 32.461 191 97 7 17 206 17 176 1.13e-12 72.0
Msa0648520 AT2G37080.3 31.579 190 98 6 17 206 17 174 1.67e-12 71.6

Find 178 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGTTGTTTCTATTTC+TGG 0.107855 4_3:+54985353 None:intergenic
AAATTTGATATTTAAATATT+AGG 0.111752 4_3:+54985063 None:intergenic
AAAGCTTTGCTTGGAAAATT+TGG 0.148163 4_3:-54985406 Msa0648520:CDS
TTCATGCTCAGTGTGATTTC+TGG 0.166546 4_3:+54985936 None:intergenic
GAAAATTGGTTTGAAATTAT+TGG 0.182744 4_3:+54989702 None:intergenic
CTGCTTTCAACTTCAATATA+AGG 0.227623 4_3:+54987144 None:intergenic
TCAGAAAATTCAACGACTTT+AGG 0.228754 4_3:+54985871 None:intergenic
AATTTGATATTTAAATATTA+GGG 0.236212 4_3:+54985064 None:intergenic
GATTTGAAGTTAGTCTTAAA+AGG 0.240438 4_3:-54986432 Msa0648520:CDS
TTGCTAACTTTACTTACTTT+TGG 0.242464 4_3:+54988888 None:intergenic
GTAGTAAGTTAGAAGAAAAT+TGG 0.262393 4_3:+54989688 None:intergenic
TCAATGAATTGGAGAATTCT+AGG 0.267794 4_3:-54986593 Msa0648520:CDS
GAGAAACACAACAACAATTT+AGG 0.280321 4_3:+54989659 None:intergenic
GAGAGCTTTGATAAGATAAA+TGG 0.293654 4_3:-54985511 Msa0648520:CDS
CTGAAAGCCCTCATTTGAAT+TGG 0.300931 4_3:+54985088 None:intergenic
GAGTTGCACGATTGAGAAAA+AGG 0.311057 4_3:-54985623 Msa0648520:CDS
CCTTCTCCTTCTCAGCTTGA+AGG 0.311769 4_3:+54987603 None:intergenic
ATGGGCTTGTAATATTGTTT+AGG 0.313252 4_3:-54985227 Msa0648520:three_prime_UTR
TTCAGAACGCCGTCTTCTTA+TGG 0.322768 4_3:-54986766 Msa0648520:CDS
TCTTTGCTCTCATCTTCCTT+TGG 0.336435 4_3:+54985685 None:intergenic
GAAGAGAATGGTCATGGATA+TGG 0.341434 4_3:-54985850 Msa0648520:CDS
GTTGCTTAGAAAATTCTCTT+TGG 0.347577 4_3:+54986491 None:intergenic
TCTGAACCCTTTGCAGCTCT+TGG 0.352340 4_3:+54987683 None:intergenic
GAAAGATAATGTGGCCTGTC+TGG 0.352818 4_3:-54989790 Msa0648520:five_prime_UTR
AAACAAACTCATCAATGAAT+TGG 0.355092 4_3:-54986604 Msa0648520:CDS
AATCACACTGAGCATGAAAA+TGG 0.356757 4_3:-54985931 Msa0648520:CDS
CTGAGCTTCTTCGTCCCTAT+TGG 0.359876 4_3:+54986176 None:intergenic
GGAGGAGTTGTCAAAGTTAC+TGG 0.363861 4_3:-54985971 Msa0648520:CDS
AAAATTCCGAGCTGTTGAAT+TGG 0.372773 4_3:-54987468 Msa0648520:CDS
TGGCGACTCAGATGCTGATT+TGG 0.373526 4_3:+54988857 None:intergenic
CTCCACCTTCTTAATAGATT+CGG 0.374470 4_3:+54985990 None:intergenic
TTGCTACCAACATGATGATA+TGG 0.381455 4_3:+54985178 None:intergenic
TACTTGTTACCTTGCTTCCA+TGG 0.387341 4_3:-54989578 Msa0648520:exon
AGGGAAAGCTCAACAACCTT+TGG 0.390841 4_3:+54985814 None:intergenic
TTCCTTAACTGCCTCAAGTT+CGG 0.393340 4_3:+54986695 None:intergenic
TTTGAGTTCTTCCTGATTGA+GGG 0.393979 4_3:+54985795 None:intergenic
TTTGAGCCACCAATGCTGCC+TGG 0.397662 4_3:+54987519 None:intergenic
CAATATAAGGTTATTATCAC+TGG 0.402454 4_3:+54987157 None:intergenic
AGGAAGAATCAAATGCCAAT+AGG 0.404807 4_3:-54986191 Msa0648520:CDS
GAAACTGAAGGAGAATATAT+TGG 0.409904 4_3:-54986073 Msa0648520:CDS
TGTTGCCGGTGGTGCTTTGT+TGG 0.413551 4_3:+54988911 None:intergenic
GCTGATTTCCGCTCAACAGC+TGG 0.414676 4_3:+54988774 None:intergenic
GCATGAAAATGGTGATCTTT+CGG 0.415307 4_3:-54985920 Msa0648520:CDS
GCCTCTGGAAGTTCTCTCTC+TGG 0.419412 4_3:+54985586 None:intergenic
ATCCGAACTTGAGGCAGTTA+AGG 0.419625 4_3:-54986697 Msa0648520:CDS
TCTTCCAATGATTTAGCCTC+TGG 0.426077 4_3:+54985571 None:intergenic
CTAACTTCAAATCTTCAATC+TGG 0.431089 4_3:+54986442 None:intergenic
CCGAGCTGTTGAATTGGAAC+AGG 0.431367 4_3:-54987462 Msa0648520:CDS
CATAGCTTTCCCTTTCAGCT+TGG 0.431387 4_3:+54986469 None:intergenic
TGTTGAGCTTTCCCTCAATC+AGG 0.432554 4_3:-54985806 Msa0648520:CDS
CCATCTGCAGGAAGCTCTAA+AGG 0.434538 4_3:-54986115 Msa0648520:CDS
TCAGATGCTGATTTGGTCAC+TGG 0.435750 4_3:+54988864 None:intergenic
GTTATAGAGAACATTGATAA+TGG 0.439389 4_3:-54985481 Msa0648520:CDS
GAGCTTCTCATTTGCTTCCT+CGG 0.442024 4_3:+54987541 None:intergenic
TGAAAGCCCTCATTTGAATT+GGG 0.443283 4_3:+54985089 None:intergenic
GTTTGAGTTCTTCCTGATTG+AGG 0.445779 4_3:+54985794 None:intergenic
CCTAAACCTGTGAAAATGAA+TGG 0.446361 4_3:-54985712 Msa0648520:CDS
TTCATGTGGTTGTTCCAGAC+AGG 0.448414 4_3:+54989776 None:intergenic
ACTTCCAGAGGCTAAATCAT+TGG 0.450557 4_3:-54985575 Msa0648520:CDS
TGACATAAACAAGGAACAAA+TGG 0.457908 4_3:+54985113 None:intergenic
GAGATCTGCATCAGAATCCT+TGG 0.462775 4_3:-54986919 Msa0648520:CDS
CTCAAGCTCCTCAGTGGTTG+AGG 0.472269 4_3:+54987346 None:intergenic
TCTAAGCAACCAAGCTGAAA+GGG 0.473285 4_3:-54986478 Msa0648520:CDS
GGAAGCTTGCTCAAGAAGAA+AGG 0.475338 4_3:-54985385 Msa0648520:CDS
AGCTGAATTGACACAGTTGA+AGG 0.478624 4_3:-54987210 Msa0648520:CDS
CCTTTAGAGCTTCCTGCAGA+TGG 0.481010 4_3:+54986115 None:intergenic
GGCTCAAAAGCAGGCTAAAG+AGG 0.482156 4_3:-54987504 Msa0648520:CDS
AAGAAGAAGAAAGCTTTGCT+TGG 0.483792 4_3:-54985415 Msa0648520:CDS
AGGAAGATGAGAGCAAAGAA+AGG 0.487813 4_3:-54985681 Msa0648520:CDS
GGAAGAATCAAATGCCAATA+GGG 0.488686 4_3:-54986190 Msa0648520:CDS
CATCAGCATGATTTAATGCC+TGG 0.490454 4_3:+54987282 None:intergenic
TGGCTTCAAAATCTAGTACT+AGG 0.491809 4_3:-54989558 Msa0648520:intron
ATCAATGTTCTCTATAACAG+TGG 0.492151 4_3:+54985486 None:intergenic
AGCATTGGTGGCTCAAAAGC+AGG 0.492354 4_3:-54987513 Msa0648520:CDS
AAAACGATGAACTCCGAGCT+AGG 0.492776 4_3:-54986017 Msa0648520:CDS
CTGCTTCATTACAGATTCCA+AGG 0.493723 4_3:+54986902 None:intergenic
TTGAAATTATTGGAAGGAGA+AGG 0.495882 4_3:+54989712 None:intergenic
AGAAGCACAAAGAGTGGCCG+AGG 0.498602 4_3:-54987558 Msa0648520:CDS
GAAGCTCCAGGCAGCATTGG+TGG 0.499796 4_3:-54987525 Msa0648520:CDS
ACAAGCTCCAAGAGCTGCAA+AGG 0.501010 4_3:-54987690 Msa0648520:CDS
AGTTAAGGAACTAGAAATGA+GGG 0.504114 4_3:-54986964 Msa0648520:CDS
TTCTAAGCAACCAAGCTGAA+AGG 0.505989 4_3:-54986479 Msa0648520:CDS
ATGTCATCCCAATTCAAATG+AGG 0.512668 4_3:-54985096 Msa0648520:three_prime_UTR
TGAGAAGCTCCAGGCAGCAT+TGG 0.514376 4_3:-54987528 Msa0648520:CDS
CTATTATTGCTTACATCAGG+TGG 0.516293 4_3:+54988735 None:intergenic
GAGAATGGTCATGGATATGG+AGG 0.517496 4_3:-54985847 Msa0648520:CDS
GCAAAATTCACGTCTTTCTG+TGG 0.518226 4_3:-54988826 Msa0648520:CDS
TAGATTCGGCTTCCCTAGCT+CGG 0.520735 4_3:+54986004 None:intergenic
TGGTGCTTTGTTGGAACTGT+CGG 0.523110 4_3:+54988920 None:intergenic
TGAAGAAGAGAATGCGGCCG+CGG 0.524949 4_3:-54986256 Msa0648520:CDS
TTCTTGTGTTGAATCTAGCA+AGG 0.527152 4_3:+54987187 None:intergenic
TGTCATCCCAATTCAAATGA+GGG 0.527827 4_3:-54985095 Msa0648520:three_prime_UTR
GGTTGAAGAATCAAACAAGT+TGG 0.530427 4_3:-54986943 Msa0648520:CDS
GACCGAGGCTATCCATCTGC+AGG 0.531409 4_3:-54986127 Msa0648520:CDS
GCAGATCCTTCAAGCTGAGA+AGG 0.531854 4_3:-54987609 Msa0648520:CDS
GGAAGCAAATGAGAAGCTCC+AGG 0.537000 4_3:-54987537 Msa0648520:CDS
AACCACTGAGGAGCTTGAGC+GGG 0.538320 4_3:-54987342 Msa0648520:CDS
AAGTTAAGGAACTAGAAATG+AGG 0.538694 4_3:-54986965 Msa0648520:CDS
CTCAGTGGTTGAGGCAAGAG+TGG 0.539143 4_3:+54987355 None:intergenic
GGACGAAGAAGCTCAGTTGA+AGG 0.541111 4_3:-54986169 Msa0648520:CDS
TGAATAAGAAGGAAGAAGAA+TGG 0.541280 4_3:-54987424 Msa0648520:CDS
AGAGGCTAAATCATTGGAAG+AGG 0.542206 4_3:-54985569 Msa0648520:CDS
AGTTAAGGAAGAGAAAGATC+AGG 0.542809 4_3:-54986682 Msa0648520:CDS
TGCTACTCTTAAAGAGAAGG+TGG 0.543694 4_3:-54986835 Msa0648520:CDS
TGATCTTTCGGACAGCGAAA+AGG 0.544136 4_3:-54985908 Msa0648520:CDS
ACGCCGTCTTCTTATGGCTA+AGG 0.545598 4_3:-54986760 Msa0648520:CDS
CAGTTCCAACAAAGCACCAC+CGG 0.546168 4_3:-54988916 Msa0648520:CDS
GCTGTTGAATTGGAACAGGC+TGG 0.548085 4_3:-54987458 Msa0648520:CDS
TGGCCACATCCAAGGCATGC+TGG 0.548388 4_3:+54987375 None:intergenic
GGCTTTGAATTCACAGATCG+TGG 0.550956 4_3:+54988795 None:intergenic
ATTGGTTTGAAATTATTGGA+AGG 0.551236 4_3:+54989706 None:intergenic
TGTGAGGAACCAGCATGCCT+TGG 0.551371 4_3:-54987384 Msa0648520:CDS
CAATGAATTGGAGAATTCTA+GGG 0.553198 4_3:-54986592 Msa0648520:CDS
TATTATTGCTTACATCAGGT+GGG 0.554905 4_3:+54988736 None:intergenic
GGTTCTCCATATCATCATGT+TGG 0.555729 4_3:-54985184 Msa0648520:three_prime_UTR
AATTGAAACTGTGAATAAGA+AGG 0.556477 4_3:-54987435 Msa0648520:CDS
GGAAGATGAGAGCAAAGAAA+GGG 0.556487 4_3:-54985680 Msa0648520:CDS
CAACCACTGAGGAGCTTGAG+CGG 0.561441 4_3:-54987343 Msa0648520:CDS
CTTCCTTAGCCATAAGAAGA+CGG 0.564152 4_3:+54986757 None:intergenic
ACTGAGTCAAAGACAGAAGA+AGG 0.566826 4_3:-54985544 Msa0648520:CDS
TACTTTCTCAGCATGAACCT+CGG 0.567598 4_3:+54987244 None:intergenic
TGAAAAGTCAAAGAAGATTG+AGG 0.568592 4_3:-54986727 Msa0648520:CDS
TGGTCATGGATATGGAGGAG+AGG 0.569474 4_3:-54985842 Msa0648520:CDS
GGAAGCCGAATCTATTAAGA+AGG 0.570744 4_3:-54985995 Msa0648520:CDS
GGCAAGAGTGGCCACATCCA+AGG 0.575724 4_3:+54987367 None:intergenic
AAGAAGTAGAATTCAAAATG+TGG 0.576268 4_3:-54985648 Msa0648520:CDS
AAACGATGAACTCCGAGCTA+GGG 0.576737 4_3:-54986016 Msa0648520:CDS
AGAAGTAGAATTCAAAATGT+GGG 0.576995 4_3:-54985647 Msa0648520:CDS
TGAGAACTCGAAGGCTGAGT+GGG 0.577593 4_3:-54986319 Msa0648520:CDS
GTTCTTAGCATCACACATCA+TGG 0.582449 4_3:+54987304 None:intergenic
AGCTGCTACTCTTAAAGAGA+AGG 0.582698 4_3:-54986838 Msa0648520:CDS
CATAAACAAGGAACAAATGG+TGG 0.583214 4_3:+54985116 None:intergenic
ATTATTGCTTACATCAGGTG+GGG 0.583904 4_3:+54988737 None:intergenic
ATAGAGAACATTGATAATGG+TGG 0.585848 4_3:-54985478 Msa0648520:CDS
AACGGTTAAGAAAGATAATG+TGG 0.587116 4_3:-54989799 Msa0648520:five_prime_UTR
TTATGCAAACAGTCTGCTTG+AGG 0.587993 4_3:-54987000 Msa0648520:CDS
GCTTTGTTGGAACTGTCGGA+TGG 0.588599 4_3:+54988924 None:intergenic
AGAAGATCTAAAGAAAGCAA+AGG 0.589350 4_3:-54987633 Msa0648520:CDS
ATGTAGAACTTGAAACCTCA+AGG 0.589981 4_3:-54987034 Msa0648520:CDS
GAACCAGCATGCCTTGGATG+TGG 0.590468 4_3:-54987378 Msa0648520:CDS
AAGACAGAAGAAGGTGGTGA+TGG 0.591342 4_3:-54985535 Msa0648520:CDS
AGGGAATGAGTTATGATGAG+AGG 0.592178 4_3:-54987091 Msa0648520:CDS
GCGTTCTGAATCCTCAAGAT+CGG 0.596202 4_3:+54986779 None:intergenic
GGCTCTTGAATCCGAACTTG+AGG 0.596607 4_3:-54986706 Msa0648520:CDS
CGAATCTATTAAGAAGGTGG+AGG 0.596983 4_3:-54985989 Msa0648520:CDS
TCAGTTGAAGGAAAATCTGA+AGG 0.598448 4_3:-54986157 Msa0648520:CDS
CAAGCTCCAAGAGCTGCAAA+GGG 0.600838 4_3:-54987689 Msa0648520:CDS
CAAACAGTCTGCTTGAGGAG+TGG 0.607787 4_3:-54986995 Msa0648520:CDS
CCTGTTCCAATTCAACAGCT+CGG 0.607837 4_3:+54987462 None:intergenic
GTCTGAGAACGTGAAACTGA+AGG 0.607986 4_3:-54986085 Msa0648520:CDS
CCTTCAAGCTGAGAAGGAGA+AGG 0.610724 4_3:-54987603 Msa0648520:CDS
AGCCGAATCTATTAAGAAGG+TGG 0.611971 4_3:-54985992 Msa0648520:CDS
ATTGCTTACATCAGGTGGGG+TGG 0.612190 4_3:+54988740 None:intergenic
GAAAATGAATGGAAAACCAA+AGG 0.613917 4_3:-54985701 Msa0648520:CDS
GAATGTGTTTGAGAACTCGA+AGG 0.623748 4_3:-54986328 Msa0648520:CDS
TAATAGGGTCTGCACATGAG+AGG 0.625836 4_3:+54986635 None:intergenic
AACCCGCTCAAGCTCCTCAG+TGG 0.633744 4_3:+54987340 None:intergenic
CTCAAGAAAGAACTCGACAA+GGG 0.633999 4_3:-54987110 Msa0648520:CDS
TCTCAAGAAAGAACTCGACA+AGG 0.634380 4_3:-54987111 Msa0648520:CDS
TTCCTGCAGATGGATAGCCT+CGG 0.644406 4_3:+54986125 None:intergenic
ATAAGATTCAGCCGTCCTTG+AGG 0.647778 4_3:+54987019 None:intergenic
TTATTTGCTTAAACAAACTG+AGG 0.648313 4_3:-54986211 Msa0648520:CDS
TTGAGAACTCGAAGGCTGAG+TGG 0.651278 4_3:-54986320 Msa0648520:CDS
GTTGAAAGAAGCACAAAGAG+TGG 0.652851 4_3:-54987564 Msa0648520:CDS
TGGAGGAGAGGAAATTCCAA+AGG 0.653330 4_3:-54985830 Msa0648520:CDS
GAATTGGGATGACATAAACA+AGG 0.659304 4_3:+54985104 None:intergenic
ATTCAAAGCCAGCTGTTGAG+CGG 0.660562 4_3:-54988782 Msa0648520:CDS
GCTACTCTTAAAGAGAAGGT+GGG 0.661481 4_3:-54986834 Msa0648520:CDS
AGCTTGCTCAAGAAGAAAGG+TGG 0.662119 4_3:-54985382 Msa0648520:CDS
GAAAACTGAAGAAGAGAATG+CGG 0.663328 4_3:-54986262 Msa0648520:CDS
AGTCAATGCTTGATGAAGCG+CGG 0.666394 4_3:-54986392 Msa0648520:CDS
TGATGCAGCTAAAGTTGCCG+AGG 0.669959 4_3:-54987261 Msa0648520:CDS
AGAACTTGAAACCTCAAGGA+CGG 0.671436 4_3:-54987030 Msa0648520:CDS
TCTGAAGGAAGTTGAGACCG+AGG 0.687621 4_3:-54986142 Msa0648520:CDS
CACTCTTGCCTCAACCACTG+AGG 0.695834 4_3:-54987354 Msa0648520:CDS
ACCAGAGAGAGAACTTCCAG+AGG 0.698874 4_3:-54985587 Msa0648520:CDS
GATGTGTGATGCTAAGAACC+AGG 0.701568 4_3:-54987300 Msa0648520:CDS
GAGTCAAAGACAGAAGAAGG+TGG 0.711580 4_3:-54985541 Msa0648520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTACTTTTTGT+CGG - chr4_3:54985510-54985529 Msa0648520:CDS 10.0%
!!! AATATAGATTTTATAAGAAA+TGG - chr4_3:54989693-54989712 Msa0648520:five_prime_UTR 10.0%
!!! ATATAGATTTTATAAGAAAT+GGG - chr4_3:54989694-54989713 Msa0648520:five_prime_UTR 10.0%
!!! TTTTTTTGTTGAATTATGAA+TGG + chr4_3:54985333-54985352 None:intergenic 15.0%
!! AAAAATAGTAATTGAAATGA+AGG + chr4_3:54986310-54986329 None:intergenic 15.0%
!!! TTCATTTCAATTACTATTTT+TGG - chr4_3:54986309-54986328 Msa0648520:CDS 15.0%
!!! TCATTTCAATTACTATTTTT+GGG - chr4_3:54986310-54986329 Msa0648520:CDS 15.0%
!!! TAATAATTTGACATTTTTGT+GGG - chr4_3:54986431-54986450 Msa0648520:CDS 15.0%
!!! AATATTGTTTAGGATTTTTT+TGG - chr4_3:54989722-54989741 Msa0648520:five_prime_UTR 15.0%
!!! GAAAATTGGTTTGAAATTAT+TGG + chr4_3:54985240-54985259 None:intergenic 20.0%
!! TCTATGTACAATTCAAAAAT+TGG - chr4_3:54985684-54985703 Msa0648520:CDS 20.0%
!! CTATGTACAATTCAAAAATT+GGG - chr4_3:54985685-54985704 Msa0648520:CDS 20.0%
!! CAACAATGTATTGTAAAATA+AGG + chr4_3:54985783-54985802 None:intergenic 20.0%
!!! AAATAAGAATTGTTTTCTTG+TGG - chr4_3:54985867-54985886 Msa0648520:CDS 20.0%
!!! CTAATAATTTGACATTTTTG+TGG - chr4_3:54986430-54986449 Msa0648520:CDS 20.0%
!!! AATAATTTGACATTTTTGTG+GGG - chr4_3:54986432-54986451 Msa0648520:CDS 20.0%
!! ATTCTGTAATGTCTATTATT+TGG - chr4_3:54986494-54986513 Msa0648520:CDS 20.0%
!! GTAAAATACTGTTAAACATA+AGG + chr4_3:54986554-54986573 None:intergenic 20.0%
!! ATTATTGATATTATGAAGCA+CGG - chr4_3:54986802-54986821 Msa0648520:CDS 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG + chr4_3:54988322-54988341 None:intergenic 20.0%
!! GGAAAAAGAAATAAATAGAT+TGG - chr4_3:54988704-54988723 Msa0648520:intron 20.0%
!!! ATTGGTTTGAAATTATTGGA+AGG + chr4_3:54985236-54985255 None:intergenic 25.0%
! GTAGTAAGTTAGAAGAAAAT+TGG + chr4_3:54985254-54985273 None:intergenic 25.0%
!! TTTTGTTGAATTATGAATGG+TGG + chr4_3:54985330-54985349 None:intergenic 25.0%
! TATACTGTTAAGATCTGAAT+TGG - chr4_3:54985440-54985459 Msa0648520:CDS 25.0%
! ATACTGTTAAGATCTGAATT+GGG - chr4_3:54985441-54985460 Msa0648520:CDS 25.0%
!!! GTAATTTGTTTTTTTGCTTG+AGG - chr4_3:54985534-54985553 Msa0648520:CDS 25.0%
! CTAGTAATTATGATATGCTA+TGG - chr4_3:54985566-54985585 Msa0648520:CDS 25.0%
!! ATGTTCATCTGTTGAAATTT+TGG - chr4_3:54985639-54985658 Msa0648520:CDS 25.0%
!! TGATTTTGTACAATTAAGCT+TGG - chr4_3:54985753-54985772 Msa0648520:CDS 25.0%
! TCAATTTCCAATCAAATAGA+TGG + chr4_3:54985900-54985919 None:intergenic 25.0%
!!! TTGTGTTTTGTTATCTTGAA+TGG - chr4_3:54985929-54985948 Msa0648520:CDS 25.0%
!! TTGCTAACTTTACTTACTTT+TGG + chr4_3:54986054-54986073 None:intergenic 25.0%
! AATCTATTATTGCTTACATC+AGG + chr4_3:54986210-54986229 None:intergenic 25.0%
! AATAGACATTACAGAATGAA+AGG + chr4_3:54986491-54986510 None:intergenic 25.0%
! TGTAATGTCTATTATTTGGT+TGG - chr4_3:54986498-54986517 Msa0648520:CDS 25.0%
! TAAGTAAAAACAAGTGACAT+GGG + chr4_3:54987031-54987050 None:intergenic 25.0%
! TTAAGTAAAAACAAGTGACA+TGG + chr4_3:54987032-54987051 None:intergenic 25.0%
! TGTACTTATTATGTATTGCT+TGG - chr4_3:54987214-54987233 Msa0648520:CDS 25.0%
! AATTGAAACTGTGAATAAGA+AGG - chr4_3:54987504-54987523 Msa0648520:CDS 25.0%
! CAATATAAGGTTATTATCAC+TGG + chr4_3:54987785-54987804 None:intergenic 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG + chr4_3:54988323-54988342 None:intergenic 25.0%
! AAACAAACTCATCAATGAAT+TGG - chr4_3:54988335-54988354 Msa0648520:intron 25.0%
! AGAAGAAGAAAAAAGCAAAA+AGG - chr4_3:54988371-54988390 Msa0648520:intron 25.0%
!!! GATTTGAAGTTAGTCTTAAA+AGG - chr4_3:54988507-54988526 Msa0648520:intron 25.0%
!!! TCTATTTATTTCTTTTTCCG+CGG + chr4_3:54988703-54988722 None:intergenic 25.0%
! TTATTTGCTTAAACAAACTG+AGG - chr4_3:54988728-54988747 Msa0648520:intron 25.0%
!! ATTTTGAATTCTACTTCTTC+TGG + chr4_3:54989290-54989309 None:intergenic 25.0%
! AAGAAGTAGAATTCAAAATG+TGG - chr4_3:54989291-54989310 Msa0648520:intron 25.0%
! AGAAGTAGAATTCAAAATGT+GGG - chr4_3:54989292-54989311 Msa0648520:intron 25.0%
! GTTATAGAGAACATTGATAA+TGG - chr4_3:54989458-54989477 Msa0648520:intron 25.0%
!!! TTGAATGTTGTTTCTATTTC+TGG + chr4_3:54989589-54989608 None:intergenic 25.0%
ATGTGAGAGAGAAAAAAGAA+CGG - chr4_3:54985122-54985141 Msa0648520:three_prime_UTR 30.0%
AACGGTTAAGAAAGATAATG+TGG - chr4_3:54985140-54985159 Msa0648520:three_prime_UTR 30.0%
!!! AAATTGAGTTGGTTTTCATG+TGG + chr4_3:54985180-54985199 None:intergenic 30.0%
CAGAAACTGAAAAATTGAGT+TGG + chr4_3:54985191-54985210 None:intergenic 30.0%
TTGAAATTATTGGAAGGAGA+AGG + chr4_3:54985230-54985249 None:intergenic 30.0%
GAGAAACACAACAACAATTT+AGG + chr4_3:54985283-54985302 None:intergenic 30.0%
!!! ATTTGTTTTTTTGCTTGAGG+AGG - chr4_3:54985537-54985556 Msa0648520:CDS 30.0%
AATTAAGCATCCAGAATCAT+TGG + chr4_3:54985845-54985864 None:intergenic 30.0%
CTTAGATCCATCTATTTGAT+TGG - chr4_3:54985890-54985909 Msa0648520:CDS 30.0%
!!! GAATGGTGTGTTACTTTTAA+TGG - chr4_3:54985946-54985965 Msa0648520:CDS 30.0%
TATTATTGCTTACATCAGGT+GGG + chr4_3:54986206-54986225 None:intergenic 30.0%
TGTCTATTATTTGGTTGGAT+TGG - chr4_3:54986503-54986522 Msa0648520:CDS 30.0%
!! TATTATTTGGTTGGATTGGT+TGG - chr4_3:54986507-54986526 Msa0648520:CDS 30.0%
AATACTGTTAAACATAAGGC+AGG + chr4_3:54986550-54986569 None:intergenic 30.0%
CACTAGATATTTGAATCAAC+TGG + chr4_3:54986618-54986637 None:intergenic 30.0%
AATTGACAGCAAAAAAGAAG+TGG + chr4_3:54986729-54986748 None:intergenic 30.0%
GATTCAAGTCATAAACCAAA+TGG + chr4_3:54986778-54986797 None:intergenic 30.0%
TTTCCAATTATTAGCTGTGT+CGG + chr4_3:54986869-54986888 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr4_3:54986900-54986919 Msa0648520:CDS 30.0%
TCATCTACTAATATGAAGCA+CGG + chr4_3:54986989-54987008 None:intergenic 30.0%
AGTAAAATTCGACTCTTGAT+TGG - chr4_3:54987092-54987111 Msa0648520:CDS 30.0%
GTAAAATTCGACTCTTGATT+GGG - chr4_3:54987093-54987112 Msa0648520:CDS 30.0%
! TTATCATGCTCTCTTTTGAA+AGG - chr4_3:54987176-54987195 Msa0648520:CDS 30.0%
AGAAGATCTAAAGAAAGCAA+AGG - chr4_3:54987306-54987325 Msa0648520:CDS 30.0%
TGAATAAGAAGGAAGAAGAA+TGG - chr4_3:54987515-54987534 Msa0648520:CDS 30.0%
CTGCTTTCAACTTCAATATA+AGG + chr4_3:54987798-54987817 None:intergenic 30.0%
AAGTTAAGGAACTAGAAATG+AGG - chr4_3:54987974-54987993 Msa0648520:intron 30.0%
AGTTAAGGAACTAGAAATGA+GGG - chr4_3:54987975-54987994 Msa0648520:intron 30.0%
TGAAAAGTCAAAGAAGATTG+AGG - chr4_3:54988212-54988231 Msa0648520:intron 30.0%
TCAATGAATTGGAGAATTCT+AGG - chr4_3:54988346-54988365 Msa0648520:intron 30.0%
CAATGAATTGGAGAATTCTA+GGG - chr4_3:54988347-54988366 Msa0648520:intron 30.0%
AGAAAAAAGCAAAAAGGCAA+TGG - chr4_3:54988377-54988396 Msa0648520:intron 30.0%
GTTGCTTAGAAAATTCTCTT+TGG + chr4_3:54988451-54988470 None:intergenic 30.0%
CTAACTTCAAATCTTCAATC+TGG + chr4_3:54988500-54988519 None:intergenic 30.0%
! TCTCTTCTTCAGTTTTCTTT+AGG + chr4_3:54988674-54988693 None:intergenic 30.0%
GAAACTGAAGGAGAATATAT+TGG - chr4_3:54988866-54988885 Msa0648520:CDS 30.0%
TCAGAAAATTCAACGACTTT+AGG + chr4_3:54989071-54989090 None:intergenic 30.0%
!! GTTGAATTTTCTGAAGAGAA+TGG - chr4_3:54989077-54989096 Msa0648520:intron 30.0%
GAAAATGAATGGAAAACCAA+AGG - chr4_3:54989238-54989257 Msa0648520:intron 30.0%
! GAGAGCTTTGATAAGATAAA+TGG - chr4_3:54989428-54989447 Msa0648520:intron 30.0%
ATCAATGTTCTCTATAACAG+TGG + chr4_3:54989456-54989475 None:intergenic 30.0%
!! ATAGAGAACATTGATAATGG+TGG - chr4_3:54989461-54989480 Msa0648520:intron 30.0%
!! TGTTGTTGTTCTTCTTTTAC+TGG + chr4_3:54989494-54989513 None:intergenic 30.0%
AAAGCTTTGCTTGGAAAATT+TGG - chr4_3:54989533-54989552 Msa0648520:intron 30.0%
ATGGGCTTGTAATATTGTTT+AGG - chr4_3:54989712-54989731 Msa0648520:five_prime_UTR 30.0%
!!! GTTTAGGATTTTTTTGGCTT+TGG - chr4_3:54989728-54989747 Msa0648520:five_prime_UTR 30.0%
! AATGGTGGAAAAAGAATAGT+TGG + chr4_3:54989811-54989830 None:intergenic 30.0%
TGACATAAACAAGGAACAAA+TGG + chr4_3:54989829-54989848 None:intergenic 30.0%
!!! AGTACTAGATTTTGAAGCCA+TGG + chr4_3:54985381-54985400 None:intergenic 35.0%
TGGCTTCAAAATCTAGTACT+AGG - chr4_3:54985381-54985400 Msa0648520:CDS 35.0%
! AGTACTAGGTTAGTCAAGTT+TGG - chr4_3:54985395-54985414 Msa0648520:CDS 35.0%
!!! TTACTTACTTTTGGTGTTGC+CGG + chr4_3:54986045-54986064 None:intergenic 35.0%
! GAAAGACGTGAATTTTGCAA+CGG + chr4_3:54986111-54986130 None:intergenic 35.0%
ATTATTGCTTACATCAGGTG+GGG + chr4_3:54986205-54986224 None:intergenic 35.0%
CTATTATTGCTTACATCAGG+TGG + chr4_3:54986207-54986226 None:intergenic 35.0%
TTCAGTAGACTTGAGATGTT+AGG + chr4_3:54986353-54986372 None:intergenic 35.0%
! GTCTACTGAAAAGTGTGATA+AGG - chr4_3:54986363-54986382 Msa0648520:CDS 35.0%
TATCGAATCGAGATATGACT+CGG + chr4_3:54986584-54986603 None:intergenic 35.0%
GATATTATGAAGCACGGATA+CGG - chr4_3:54986808-54986827 Msa0648520:CDS 35.0%
AAAATTCCGAGCTGTTGAAT+TGG - chr4_3:54987471-54987490 Msa0648520:CDS 35.0%
! AAAAAGAGCTTGAAAGTGTG+AGG - chr4_3:54987539-54987558 Msa0648520:CDS 35.0%
TTCTTGTGTTGAATCTAGCA+AGG + chr4_3:54987755-54987774 None:intergenic 35.0%
ATGTAGAACTTGAAACCTCA+AGG - chr4_3:54987905-54987924 Msa0648520:intron 35.0%
GGAGTGGAAAAAGAAAGTTA+AGG - chr4_3:54987960-54987979 Msa0648520:intron 35.0%
GGTTGAAGAATCAAACAAGT+TGG - chr4_3:54987996-54988015 Msa0648520:intron 35.0%
AGTTAAGGAAGAGAAAGATC+AGG - chr4_3:54988257-54988276 Msa0648520:intron 35.0%
GAAAACTGAAGAAGAGAATG+CGG - chr4_3:54988677-54988696 Msa0648520:intron 35.0%
AGGAAGAATCAAATGCCAAT+AGG - chr4_3:54988748-54988767 Msa0648520:intron 35.0%
GGAAGAATCAAATGCCAATA+GGG - chr4_3:54988749-54988768 Msa0648520:CDS 35.0%
TCAGTTGAAGGAAAATCTGA+AGG - chr4_3:54988782-54988801 Msa0648520:CDS 35.0%
CTCCACCTTCTTAATAGATT+CGG + chr4_3:54988952-54988971 None:intergenic 35.0%
AATCACACTGAGCATGAAAA+TGG - chr4_3:54989008-54989027 Msa0648520:intron 35.0%
GCATGAAAATGGTGATCTTT+CGG - chr4_3:54989019-54989038 Msa0648520:intron 35.0%
!! TTTTCTGAAGAGAATGGTCA+TGG - chr4_3:54989083-54989102 Msa0648520:intron 35.0%
! TTTGAGTTCTTCCTGATTGA+GGG + chr4_3:54989147-54989166 None:intergenic 35.0%
! CCATTCATTTTCACAGGTTT+AGG + chr4_3:54989230-54989249 None:intergenic 35.0%
CCTAAACCTGTGAAAATGAA+TGG - chr4_3:54989227-54989246 Msa0648520:intron 35.0%
! GGTTTTCCATTCATTTTCAC+AGG + chr4_3:54989236-54989255 None:intergenic 35.0%
AAGAAGAAGAAAGCTTTGCT+TGG - chr4_3:54989524-54989543 Msa0648520:intron 35.0%
!!! GATTTTTTTGGCTTTGGTTG+TGG - chr4_3:54989734-54989753 Msa0648520:five_prime_UTR 35.0%
TTGCTACCAACATGATGATA+TGG + chr4_3:54989764-54989783 None:intergenic 35.0%
CATAAACAAGGAACAAATGG+TGG + chr4_3:54989826-54989845 None:intergenic 35.0%
GAATTGGGATGACATAAACA+AGG + chr4_3:54989838-54989857 None:intergenic 35.0%
ATGTCATCCCAATTCAAATG+AGG - chr4_3:54989843-54989862 Msa0648520:five_prime_UTR 35.0%
TGTCATCCCAATTCAAATGA+GGG - chr4_3:54989844-54989863 Msa0648520:five_prime_UTR 35.0%
TGAAAGCCCTCATTTGAATT+GGG + chr4_3:54989853-54989872 None:intergenic 35.0%
! TACTTGTTACCTTGCTTCCA+TGG - chr4_3:54985361-54985380 Msa0648520:exon 40.0%
!!! ATTTTGAAGCCATGGAAGCA+AGG + chr4_3:54985373-54985392 None:intergenic 40.0%
!! GCTGTTGTTTCCAATGATTC+TGG - chr4_3:54985832-54985851 Msa0648520:CDS 40.0%
GCAAAATTCACGTCTTTCTG+TGG - chr4_3:54986113-54986132 Msa0648520:CDS 40.0%
TTGAACTCGAGATGAGATTC+AGG + chr4_3:54986656-54986675 None:intergenic 40.0%
GAACCATTCTAACGAATCTC+TGG - chr4_3:54986684-54986703 Msa0648520:CDS 40.0%
TAGCCAGAGATTCGTTAGAA+TGG + chr4_3:54986690-54986709 None:intergenic 40.0%
GACAGCAAAAAAGAAGTGGT+TGG + chr4_3:54986725-54986744 None:intergenic 40.0%
! GACACTTCTCTTTTGCCATT+TGG - chr4_3:54986760-54986779 Msa0648520:CDS 40.0%
! GTTGAAAGAAGCACAAAGAG+TGG - chr4_3:54987375-54987394 Msa0648520:CDS 40.0%
!! AGCTCGGAATTTTTCGATCT+CGG + chr4_3:54987464-54987483 None:intergenic 40.0%
GTTCTTAGCATCACACATCA+TGG + chr4_3:54987638-54987657 None:intergenic 40.0%
CATCAGCATGATTTAATGCC+TGG + chr4_3:54987660-54987679 None:intergenic 40.0%
TACTTTCTCAGCATGAACCT+CGG + chr4_3:54987698-54987717 None:intergenic 40.0%
AGCTGAATTGACACAGTTGA+AGG - chr4_3:54987729-54987748 Msa0648520:intron 40.0%
TCTCAAGAAAGAACTCGACA+AGG - chr4_3:54987828-54987847 Msa0648520:intron 40.0%
CTCAAGAAAGAACTCGACAA+GGG - chr4_3:54987829-54987848 Msa0648520:intron 40.0%
AGGGAATGAGTTATGATGAG+AGG - chr4_3:54987848-54987867 Msa0648520:intron 40.0%
AGAACTTGAAACCTCAAGGA+CGG - chr4_3:54987909-54987928 Msa0648520:intron 40.0%
TTATGCAAACAGTCTGCTTG+AGG - chr4_3:54987939-54987958 Msa0648520:intron 40.0%
CTGCTTCATTACAGATTCCA+AGG + chr4_3:54988040-54988059 None:intergenic 40.0%
AGCTGCTACTCTTAAAGAGA+AGG - chr4_3:54988101-54988120 Msa0648520:intron 40.0%
TGCTACTCTTAAAGAGAAGG+TGG - chr4_3:54988104-54988123 Msa0648520:intron 40.0%
GCTACTCTTAAAGAGAAGGT+GGG - chr4_3:54988105-54988124 Msa0648520:intron 40.0%
CTTCCTTAGCCATAAGAAGA+CGG + chr4_3:54988185-54988204 None:intergenic 40.0%
TTCCTTAACTGCCTCAAGTT+CGG + chr4_3:54988247-54988266 None:intergenic 40.0%
TTCTAAGCAACCAAGCTGAA+AGG - chr4_3:54988460-54988479 Msa0648520:intron 40.0%
TCTAAGCAACCAAGCTGAAA+GGG - chr4_3:54988461-54988480 Msa0648520:intron 40.0%
GAATGTGTTTGAGAACTCGA+AGG - chr4_3:54988611-54988630 Msa0648520:intron 40.0%
GGAAGCCGAATCTATTAAGA+AGG - chr4_3:54988944-54988963 Msa0648520:intron 40.0%
AGCCGAATCTATTAAGAAGG+TGG - chr4_3:54988947-54988966 Msa0648520:intron 40.0%
CGAATCTATTAAGAAGGTGG+AGG - chr4_3:54988950-54988969 Msa0648520:intron 40.0%
TTCATGCTCAGTGTGATTTC+TGG + chr4_3:54989006-54989025 None:intergenic 40.0%
GAAGAGAATGGTCATGGATA+TGG - chr4_3:54989089-54989108 Msa0648520:intron 40.0%
! GTTTGAGTTCTTCCTGATTG+AGG + chr4_3:54989148-54989167 None:intergenic 40.0%
TCTTTGCTCTCATCTTCCTT+TGG + chr4_3:54989257-54989276 None:intergenic 40.0%
AGGAAGATGAGAGCAAAGAA+AGG - chr4_3:54989258-54989277 Msa0648520:intron 40.0%
GGAAGATGAGAGCAAAGAAA+GGG - chr4_3:54989259-54989278 Msa0648520:intron 40.0%
GAGTTGCACGATTGAGAAAA+AGG - chr4_3:54989316-54989335 Msa0648520:intron 40.0%
ACTTCCAGAGGCTAAATCAT+TGG - chr4_3:54989364-54989383 Msa0648520:intron 40.0%
TCTTCCAATGATTTAGCCTC+TGG + chr4_3:54989371-54989390 None:intergenic 40.0%
AGAGGCTAAATCATTGGAAG+AGG - chr4_3:54989370-54989389 Msa0648520:intron 40.0%
ACTGAGTCAAAGACAGAAGA+AGG - chr4_3:54989395-54989414 Msa0648520:intron 40.0%
GGTTCTCCATATCATCATGT+TGG - chr4_3:54989755-54989774 Msa0648520:five_prime_UTR 40.0%
CTGAAAGCCCTCATTTGAAT+TGG + chr4_3:54989854-54989873 None:intergenic 40.0%
GAAAGATAATGTGGCCTGTC+TGG - chr4_3:54985149-54985168 Msa0648520:three_prime_UTR 45.0%
TTCATGTGGTTGTTCCAGAC+AGG + chr4_3:54985166-54985185 None:intergenic 45.0%
! TGGTGCTTTGTTGGAACTGT+CGG + chr4_3:54986022-54986041 None:intergenic 45.0%
!! TCAGATGCTGATTTGGTCAC+TGG + chr4_3:54986078-54986097 None:intergenic 45.0%
! CGTGAATTTTGCAACGGAGA+TGG + chr4_3:54986105-54986124 None:intergenic 45.0%
!! GGCTTTGAATTCACAGATCG+TGG + chr4_3:54986147-54986166 None:intergenic 45.0%
ATTCAAAGCCAGCTGTTGAG+CGG - chr4_3:54986157-54986176 Msa0648520:CDS 45.0%
! GGAAACATCTGAGATGTGCA+AGG - chr4_3:54986384-54986403 Msa0648520:CDS 45.0%
TAAGGCAGGAACATCTTCAG+CGG + chr4_3:54986536-54986555 None:intergenic 45.0%
ACGCCGACACAGCTAATAAT+TGG - chr4_3:54986863-54986882 Msa0648520:CDS 45.0%
GAGCTTCTCATTTGCTTCCT+CGG + chr4_3:54987401-54987420 None:intergenic 45.0%
CCTGTTCCAATTCAACAGCT+CGG + chr4_3:54987480-54987499 None:intergenic 45.0%
GATGTGTGATGCTAAGAACC+AGG - chr4_3:54987639-54987658 Msa0648520:CDS 45.0%
ATAAGATTCAGCCGTCCTTG+AGG + chr4_3:54987923-54987942 None:intergenic 45.0%
GAGATCTGCATCAGAATCCT+TGG - chr4_3:54988020-54988039 Msa0648520:intron 45.0%
GAGACAAAAAGCCGATCTTG+AGG - chr4_3:54988149-54988168 Msa0648520:intron 45.0%
! GCGTTCTGAATCCTCAAGAT+CGG + chr4_3:54988163-54988182 None:intergenic 45.0%
TTCAGAACGCCGTCTTCTTA+TGG - chr4_3:54988173-54988192 Msa0648520:intron 45.0%
ATCCGAACTTGAGGCAGTTA+AGG - chr4_3:54988242-54988261 Msa0648520:intron 45.0%
TAATAGGGTCTGCACATGAG+AGG + chr4_3:54988307-54988326 None:intergenic 45.0%
CATAGCTTTCCCTTTCAGCT+TGG + chr4_3:54988473-54988492 None:intergenic 45.0%
AGTCAATGCTTGATGAAGCG+CGG - chr4_3:54988547-54988566 Msa0648520:intron 45.0%
GTCTGAGAACGTGAAACTGA+AGG - chr4_3:54988854-54988873 Msa0648520:CDS 45.0%
AAAACGATGAACTCCGAGCT+AGG - chr4_3:54988922-54988941 Msa0648520:CDS 45.0%
AAACGATGAACTCCGAGCTA+GGG - chr4_3:54988923-54988942 Msa0648520:CDS 45.0%
GGAGGAGTTGTCAAAGTTAC+TGG - chr4_3:54988968-54988987 Msa0648520:intron 45.0%
TGATCTTTCGGACAGCGAAA+AGG - chr4_3:54989031-54989050 Msa0648520:intron 45.0%
GAGAATGGTCATGGATATGG+AGG - chr4_3:54989092-54989111 Msa0648520:intron 45.0%
TGGAGGAGAGGAAATTCCAA+AGG - chr4_3:54989109-54989128 Msa0648520:intron 45.0%
AGGGAAAGCTCAACAACCTT+TGG + chr4_3:54989128-54989147 None:intergenic 45.0%
TGTTGAGCTTTCCCTCAATC+AGG - chr4_3:54989133-54989152 Msa0648520:intron 45.0%
GAGTCAAAGACAGAAGAAGG+TGG - chr4_3:54989398-54989417 Msa0648520:intron 45.0%
AAGACAGAAGAAGGTGGTGA+TGG - chr4_3:54989404-54989423 Msa0648520:intron 45.0%
! GGAAGCTTGCTCAAGAAGAA+AGG - chr4_3:54989554-54989573 Msa0648520:intron 45.0%
! AGCTTGCTCAAGAAGAAAGG+TGG - chr4_3:54989557-54989576 Msa0648520:intron 45.0%
!! AAAAAAAAAAAAAACAAAAA+TGG + chr4_3:54985493-54985512 None:intergenic 5.0%
!! AATTTGATATTTAAATATTA+GGG + chr4_3:54989878-54989897 None:intergenic 5.0%
!! AAATTTGATATTTAAATATT+AGG + chr4_3:54989879-54989898 None:intergenic 5.0%
! GCTTTGTTGGAACTGTCGGA+TGG + chr4_3:54986018-54986037 None:intergenic 50.0%
! CAGTTCCAACAAAGCACCAC+CGG - chr4_3:54986023-54986042 Msa0648520:CDS 50.0%
!!! CTTACTTTTGGTGTTGCCGG+TGG + chr4_3:54986042-54986061 None:intergenic 50.0%
! TGGCGACTCAGATGCTGATT+TGG + chr4_3:54986085-54986104 None:intergenic 50.0%
ATTGCTTACATCAGGTGGGG+TGG + chr4_3:54986202-54986221 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr4_3:54986814-54986833 Msa0648520:CDS 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG - chr4_3:54986911-54986930 Msa0648520:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + chr4_3:54986978-54986997 None:intergenic 50.0%
CGACTCTTGATTGGGAAAGC+AGG - chr4_3:54987101-54987120 Msa0648520:CDS 50.0%
ACAAGCTCCAAGAGCTGCAA+AGG - chr4_3:54987249-54987268 Msa0648520:CDS 50.0%
CAAGCTCCAAGAGCTGCAAA+GGG - chr4_3:54987250-54987269 Msa0648520:CDS 50.0%
TCTGAACCCTTTGCAGCTCT+TGG + chr4_3:54987259-54987278 None:intergenic 50.0%
GCAGATCCTTCAAGCTGAGA+AGG - chr4_3:54987330-54987349 Msa0648520:CDS 50.0%
CCTTCTCCTTCTCAGCTTGA+AGG + chr4_3:54987339-54987358 None:intergenic 50.0%
CCTTCAAGCTGAGAAGGAGA+AGG - chr4_3:54987336-54987355 Msa0648520:CDS 50.0%
GGAAGCAAATGAGAAGCTCC+AGG - chr4_3:54987402-54987421 Msa0648520:CDS 50.0%
!! AGCATTGGTGGCTCAAAAGC+AGG - chr4_3:54987426-54987445 Msa0648520:CDS 50.0%
GGCTCAAAAGCAGGCTAAAG+AGG - chr4_3:54987435-54987454 Msa0648520:CDS 50.0%
CCGAGCTGTTGAATTGGAAC+AGG - chr4_3:54987477-54987496 Msa0648520:CDS 50.0%
GCTGTTGAATTGGAACAGGC+TGG - chr4_3:54987481-54987500 Msa0648520:CDS 50.0%
TGATGCAGCTAAAGTTGCCG+AGG - chr4_3:54987678-54987697 Msa0648520:CDS 50.0%
CAAACAGTCTGCTTGAGGAG+TGG - chr4_3:54987944-54987963 Msa0648520:intron 50.0%
ACGCCGTCTTCTTATGGCTA+AGG - chr4_3:54988179-54988198 Msa0648520:intron 50.0%
GGCTCTTGAATCCGAACTTG+AGG - chr4_3:54988233-54988252 Msa0648520:intron 50.0%
TTGAGAACTCGAAGGCTGAG+TGG - chr4_3:54988619-54988638 Msa0648520:intron 50.0%
TGAGAACTCGAAGGCTGAGT+GGG - chr4_3:54988620-54988639 Msa0648520:intron 50.0%
CTGAGCTTCTTCGTCCCTAT+TGG + chr4_3:54988766-54988785 None:intergenic 50.0%
GGACGAAGAAGCTCAGTTGA+AGG - chr4_3:54988770-54988789 Msa0648520:CDS 50.0%
TCTGAAGGAAGTTGAGACCG+AGG - chr4_3:54988797-54988816 Msa0648520:CDS 50.0%
TTCCTGCAGATGGATAGCCT+CGG + chr4_3:54988817-54988836 None:intergenic 50.0%
!! CCTTTAGAGCTTCCTGCAGA+TGG + chr4_3:54988827-54988846 None:intergenic 50.0%
! CCATCTGCAGGAAGCTCTAA+AGG - chr4_3:54988824-54988843 Msa0648520:CDS 50.0%
TAGATTCGGCTTCCCTAGCT+CGG + chr4_3:54988938-54988957 None:intergenic 50.0%
TGGTCATGGATATGGAGGAG+AGG - chr4_3:54989097-54989116 Msa0648520:intron 50.0%
ACCAGAGAGAGAACTTCCAG+AGG - chr4_3:54989352-54989371 Msa0648520:intron 50.0%
TGTTGCCGGTGGTGCTTTGT+TGG + chr4_3:54986031-54986050 None:intergenic 55.0%
! GCTGATTTCCGCTCAACAGC+TGG + chr4_3:54986168-54986187 None:intergenic 55.0%
! AGAAGCACAAAGAGTGGCCG+AGG - chr4_3:54987381-54987400 Msa0648520:CDS 55.0%
TGAGAAGCTCCAGGCAGCAT+TGG - chr4_3:54987411-54987430 Msa0648520:CDS 55.0%
TTTGAGCCACCAATGCTGCC+TGG + chr4_3:54987423-54987442 None:intergenic 55.0%
TGTGAGGAACCAGCATGCCT+TGG - chr4_3:54987555-54987574 Msa0648520:CDS 55.0%
GAACCAGCATGCCTTGGATG+TGG - chr4_3:54987561-54987580 Msa0648520:CDS 55.0%
CTCAGTGGTTGAGGCAAGAG+TGG + chr4_3:54987587-54987606 None:intergenic 55.0%
CACTCTTGCCTCAACCACTG+AGG - chr4_3:54987585-54987604 Msa0648520:CDS 55.0%
CTCAAGCTCCTCAGTGGTTG+AGG + chr4_3:54987596-54987615 None:intergenic 55.0%
CAACCACTGAGGAGCTTGAG+CGG - chr4_3:54987596-54987615 Msa0648520:CDS 55.0%
AACCACTGAGGAGCTTGAGC+GGG - chr4_3:54987597-54987616 Msa0648520:CDS 55.0%
TGAAGAAGAGAATGCGGCCG+CGG - chr4_3:54988683-54988702 Msa0648520:intron 55.0%
! GCCTCTGGAAGTTCTCTCTC+TGG + chr4_3:54989356-54989375 None:intergenic 55.0%
ACGGATACGGACACGGACAC+CGG - chr4_3:54986821-54986840 Msa0648520:CDS 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr4_3:54986843-54986862 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr4_3:54986917-54986936 Msa0648520:CDS 60.0%
ACACGACACGTGTCCGACAC+CGG - chr4_3:54986940-54986959 Msa0648520:CDS 60.0%
GATTAGGCGTGTCCCGGTGT+CGG + chr4_3:54986956-54986975 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr4_3:54986962-54986981 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr4_3:54986972-54986991 None:intergenic 60.0%
! GAAGCTCCAGGCAGCATTGG+TGG - chr4_3:54987414-54987433 Msa0648520:CDS 60.0%
TGGCCACATCCAAGGCATGC+TGG + chr4_3:54987567-54987586 None:intergenic 60.0%
GGCAAGAGTGGCCACATCCA+AGG + chr4_3:54987575-54987594 None:intergenic 60.0%
AACCCGCTCAAGCTCCTCAG+TGG + chr4_3:54987602-54987621 None:intergenic 60.0%
GACCGAGGCTATCCATCTGC+AGG - chr4_3:54988812-54988831 Msa0648520:CDS 60.0%
CACGGACACCGGACACGACA+CGG - chr4_3:54986832-54986851 Msa0648520:CDS 65.0%
CACGACACGTGTCCGACACC+GGG - chr4_3:54986941-54986960 Msa0648520:CDS 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr4_3:54986958-54986977 Msa0648520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54985060 54989901 54985060 ID=Msa0648520;Name=Msa0648520
chr4_3 mRNA 54985060 54989901 54985060 ID=Msa0648520-mRNA-1;Parent=Msa0648520;Name=Msa0648520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=320|1|1|1|1|1|3|306|858
chr4_3 exon 54985060 54987714 54985060 ID=Msa0648520-mRNA-1:exon:13980;Parent=Msa0648520-mRNA-1
chr4_3 exon 54988749 54988953 54988749 ID=Msa0648520-mRNA-1:exon:13979;Parent=Msa0648520-mRNA-1
chr4_3 exon 54989559 54989901 54989559 ID=Msa0648520-mRNA-1:exon:13978;Parent=Msa0648520-mRNA-1
chr4_3 five_prime_UTR 54989582 54989901 54989582 ID=Msa0648520-mRNA-1:five_prime_utr;Parent=Msa0648520-mRNA-1
chr4_3 CDS 54989559 54989581 54989559 ID=Msa0648520-mRNA-1:cds;Parent=Msa0648520-mRNA-1
chr4_3 CDS 54988749 54988953 54988749 ID=Msa0648520-mRNA-1:cds;Parent=Msa0648520-mRNA-1
chr4_3 CDS 54985366 54987714 54985366 ID=Msa0648520-mRNA-1:cds;Parent=Msa0648520-mRNA-1
chr4_3 three_prime_UTR 54985060 54985365 54985060 ID=Msa0648520-mRNA-1:three_prime_utr;Parent=Msa0648520-mRNA-1
Gene Sequence

>Msa0648520

ATGGCTTCAAAATCTAGTACTAGATCGAAACCATCCGACAGTTCCAACAAAGCACCACCGGCAACACCAAAAGTAAGTAAAGTTAGCAAACCAGTGACCAAATCAGCATCTGAGTCGCCATCTCCGTTGCAAAATTCACGTCTTTCTGTGGAAAAATCGCCACGATCTGTGAATTCAAAGCCAGCTGTTGAGCGGAAATCAGCAAAAGCTACTGCCACCCCACCTGATAAACAAGCTCCAAGAGCTGCAAAGGGTTCAGAGTTGCAAAATCAGTTGAATGTAGCTCAAGAAGATCTAAAGAAAGCAAAGGAGCAGATCCTTCAAGCTGAGAAGGAGAAGGTAAAAGCTATTGATGAGTTGAAAGAAGCACAAAGAGTGGCCGAGGAAGCAAATGAGAAGCTCCAGGCAGCATTGGTGGCTCAAAAGCAGGCTAAAGAGGAATCCGAGATCGAAAAATTCCGAGCTGTTGAATTGGAACAGGCTGGAATTGAAACTGTGAATAAGAAGGAAGAAGAATGGCAAAAAGAGCTTGAAAGTGTGAGGAACCAGCATGCCTTGGATGTGGCCACTCTTGCCTCAACCACTGAGGAGCTTGAGCGGGTTAAACAAGAACTCACCATGATGTGTGATGCTAAGAACCAGGCATTAAATCATGCTGATGATGCAGCTAAAGTTGCCGAGGTTCATGCTGAGAAAGTAGAAATTTATGCAGCTGAATTGACACAGTTGAAGGCCTTGCTAGATTCAACACAAGAAACAAAAGCCAGTGATAATAACCTTATATTGAAGTTGAAAGCAGAGATAGAAGCTCTCAAGAAAGAACTCGACAAGGGAATGAGTTATGATGAGAGGTTGACAGAGAAAGAAACTAAGATTGAACAGCTTAATGTAGAACTTGAAACCTCAAGGACGGCTGAATCTTATGCAAACAGTCTGCTTGAGGAGTGGAAAAAGAAAGTTAAGGAACTAGAAATGAGGGTTGAAGAATCAAACAAGTTGGAGAGATCTGCATCAGAATCCTTGGAATCTGTAATGAAGCAGCTAGAAGAAAGCAATGATCTGTTGCATGACGCAGAATCTGTAGCTGCTACTCTTAAAGAGAAGGTGGGATTGTTAGAAATGACAATTGTGAGACAAAAAGCCGATCTTGAGGATTCAGAACGCCGTCTTCTTATGGCTAAGGAAGAAAATCTTGAAAAGTCAAAGAAGATTGAGGCTCTTGAATCCGAACTTGAGGCAGTTAAGGAAGAGAAAGATCAGGCTTTGAACAATGAGCAGCTTGCAGCCTCTCATGTGCAGACCCTATTAGAAGAGAAAAACAAACTCATCAATGAATTGGAGAATTCTAGGGAAGAAGAAGAAAAAAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCTGCAGAATCTAGAGAAGCCAAAGAGAATTTTCTAAGCAACCAAGCTGAAAGGGAAAGCTATGAGAACCAGATTGAAGATTTGAAGTTAGTCTTAAAAGGTACTAATGAAAAATATGAGTCAATGCTTGATGAAGCGCGGCATGAAATTGATGTTCTCATATACAGTATTGAAAATTCTAAGAATGTGTTTGAGAACTCGAAGGCTGAGTGGGATCAGAGAGAGCTTGATCTAGTCAGCAGCCTAAAGAAAACTGAAGAAGAGAATGCGGCCGCGGAAAAAGAAATAAATAGATTGGTTTATTTGCTTAAACAAACTGAGGAAGAATCAAATGCCAATAGGGACGAAGAAGCTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGACCGAGGCTATCCATCTGCAGGAAGCTCTAAAGGAAGTAACGTCTGAGAACGTGAAACTGAAGGAGAATATATTGGACAAAGAGAATGAAATGCAGAATCTTTTTCAAGAAAACGATGAACTCCGAGCTAGGGAAGCCGAATCTATTAAGAAGGTGGAGGAGTTGTCAAAGTTACTGGATGAAGCTACAACCAGAAATCACACTGAGCATGAAAATGGTGATCTTTCGGACAGCGAAAAGGACTACGATTTGCTTCCTAAAGTCGTTGAATTTTCTGAAGAGAATGGTCATGGATATGGAGGAGAGGAAATTCCAAAGGTTGTTGAGCTTTCCCTCAATCAGGAAGAACTCAAACATAGCTTACTAGAAGAAAGTATGATCTTGAATGACAACGCTGATGAGAAAATCGAATCTCCTAAACCTGTGAAAATGAATGGAAAACCAAAGGAAGATGAGAGCAAAGAAAGGGATGATCCAGAAGAAGTAGAATTCAAAATGTGGGAGAGTTGCACGATTGAGAAAAAGGAGTTCTCTTTCTCACCAGAGAGAGAACTTCCAGAGGCTAAATCATTGGAAGAGGAAACTGAGTCAAAGACAGAAGAAGGTGGTGATGGTGAGAGCTTTGATAAGATAAATGGAACCACTGTTATAGAGAACATTGATAATGGTGGAAGCTCACCAGTAAAAGAAGAACAACAACAACAGTTGAAGAAGAAGAAGAAAGCTTTGCTTGGAAAATTTGGAAGCTTGCTCAAGAAGAAAGGTGGTAGCAACCAGAAATAG

Protein sequence

>Msa0648520

MASKSSTRSKPSDSSNKAPPATPKVSKVSKPVTKSASESPSPLQNSRLSVEKSPRSVNSKPAVERKSAKATATPPDKQAPRAAKGSELQNQLNVAQEDLKKAKEQILQAEKEKVKAIDELKEAQRVAEEANEKLQAALVAQKQAKEESEIEKFRAVELEQAGIETVNKKEEEWQKELESVRNQHALDVATLASTTEELERVKQELTMMCDAKNQALNHADDAAKVAEVHAEKVEIYAAELTQLKALLDSTQETKASDNNLILKLKAEIEALKKELDKGMSYDERLTEKETKIEQLNVELETSRTAESYANSLLEEWKKKVKELEMRVEESNKLERSASESLESVMKQLEESNDLLHDAESVAATLKEKVGLLEMTIVRQKADLEDSERRLLMAKEENLEKSKKIEALESELEAVKEEKDQALNNEQLAASHVQTLLEEKNKLINELENSREEEEKSKKAMESLASALHEVSAESREAKENFLSNQAERESYENQIEDLKLVLKGTNEKYESMLDEARHEIDVLIYSIENSKNVFENSKAEWDQRELDLVSSLKKTEEENAAAEKEINRLVYLLKQTEEESNANRDEEAQLKENLKEVETEAIHLQEALKEVTSENVKLKENILDKENEMQNLFQENDELRAREAESIKKVEELSKLLDEATTRNHTEHENGDLSDSEKDYDLLPKVVEFSEENGHGYGGEEIPKVVELSLNQEELKHSLLEESMILNDNADEKIESPKPVKMNGKPKEDESKERDDPEEVEFKMWESCTIEKKEFSFSPERELPEAKSLEEETESKTEEGGDGESFDKINGTTVIENIDNGGSSPVKEEQQQQLKKKKKALLGKFGSLLKKKGGSNQK*