AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608200 MtrunA17_Chr4g0039981 97.203 858 24 0 1 858 1 858 0.0 1628
Msa0608200 MtrunA17_Chr5g0395261 65.385 884 251 14 2 856 26 883 0.0 985
Msa0608200 MtrunA17_Chr3g0123761 30.682 352 217 5 312 663 83 407 8.19e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608200 AT5G16730.1 52.558 860 357 19 20 858 24 853 0.0 634
Msa0608200 AT3G02930.2 51.285 856 361 14 6 858 2 804 0.0 596
Msa0608200 AT3G02930.1 51.336 861 361 15 1 858 1 806 0.0 595
Msa0608200 AT3G02930.3 51.336 861 361 15 1 858 1 806 0.0 595
Msa0608200 AT1G65010.1 53.120 625 290 2 33 656 30 652 6.11e-175 541
Msa0608200 AT4G27595.1 49.145 702 327 10 1 690 1 684 1.32e-169 524
Msa0608200 AT4G27595.2 49.349 691 326 9 6 690 3 675 1.83e-168 521
Msa0608200 AT4G40020.1 30.469 256 167 2 404 659 123 367 1.20e-13 75.5
Msa0608200 AT2G37080.1 32.461 191 97 7 17 206 17 176 2.41e-12 70.9
Msa0608200 AT2G37080.2 32.461 191 97 7 17 206 17 176 2.41e-12 70.9
Msa0608200 AT2G37080.3 31.579 190 98 6 17 206 17 174 3.54e-12 70.5

Find 178 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGTTGTTTCTATTTC+TGG 0.107855 4_2:+55215913 None:intergenic
AAAGCTTTGCTTGGAAAATT+TGG 0.148163 4_2:-55215966 Msa0608200:CDS
TTCATGCTCAGTGTGATTTC+TGG 0.166546 4_2:+55216496 None:intergenic
TGAAATTGGTTTGAAATTAT+TGG 0.215276 4_2:+55220269 None:intergenic
CTGCTTTCAACTTCAATATA+AGG 0.227623 4_2:+55217704 None:intergenic
TCAGAAAATTCAACGACTTT+AGG 0.228754 4_2:+55216431 None:intergenic
TTGCTAACTTTATTTACTTT+TGG 0.239857 4_2:+55219448 None:intergenic
GATTTGAAGTTAGTCTTAAA+AGG 0.240438 4_2:-55216992 Msa0608200:CDS
TCAATGAATTGGAGAATTCT+AGG 0.267794 4_2:-55217153 Msa0608200:CDS
GAGAAACACAACAACAATTT+AGG 0.280321 4_2:+55220211 None:intergenic
GAGAGCTTTGATAAGATAAA+TGG 0.293654 4_2:-55216071 Msa0608200:CDS
CTGAAAGCCCTCATTTGAAT+TGG 0.300931 4_2:+55215648 None:intergenic
GAGTTGCACGATTGAGAAAA+AGG 0.311057 4_2:-55216183 Msa0608200:CDS
CCTTCTCCTTCTCAGCTTGA+AGG 0.311769 4_2:+55218163 None:intergenic
ATGGGCTTGTAATATTGTTT+AGG 0.313252 4_2:-55215787 Msa0608200:three_prime_UTR
TTCAGAACGCCGTCTTCTTA+TGG 0.322768 4_2:-55217326 Msa0608200:CDS
TCTTTGCTCTCATCTTCCTT+TGG 0.336435 4_2:+55216245 None:intergenic
GAAGAGAATGGTCATGGATA+TGG 0.341434 4_2:-55216410 Msa0608200:CDS
GTAGTAAGTTAGAAGAATAA+AGG 0.345041 4_2:+55220240 None:intergenic
TACTTGTTACTTTGCTTCCA+TGG 0.346474 4_2:-55220123 Msa0608200:exon
TGGCGACTCGGATGCTGATT+TGG 0.346797 4_2:+55219417 None:intergenic
GTTGCTTAGAAAATTCTCTT+TGG 0.347577 4_2:+55217051 None:intergenic
TCTGAACCCTTTGCAGCTCT+TGG 0.352340 4_2:+55218243 None:intergenic
GAAAGATAATGTGGCCTGTC+TGG 0.352818 4_2:-55220357 Msa0608200:five_prime_UTR
AAACAAACTCATCAATGAAT+TGG 0.355092 4_2:-55217164 Msa0608200:CDS
AATCACACTGAGCATGAAAA+TGG 0.356757 4_2:-55216491 Msa0608200:CDS
CTGAGCTTCTTCGTCCCTAT+TGG 0.359876 4_2:+55216736 None:intergenic
GGAGGAGTTGTCAAAGTTAC+TGG 0.363861 4_2:-55216531 Msa0608200:CDS
AAAATTCCGAGCTGTTGAAT+TGG 0.372773 4_2:-55218028 Msa0608200:CDS
CTCCACCTTCTTAATAGATT+CGG 0.374470 4_2:+55216550 None:intergenic
TTGCTACCAACATGATGATA+TGG 0.381455 4_2:+55215738 None:intergenic
AGGGAAAGCTCAACAACCTT+TGG 0.390841 4_2:+55216374 None:intergenic
TCGGATGCTGATTTGGTCAC+TGG 0.392227 4_2:+55219424 None:intergenic
TTCCTTAACTGCCTCAAGTT+CGG 0.393340 4_2:+55217255 None:intergenic
TTTGAGTTCTTCCTGATTGA+GGG 0.393979 4_2:+55216355 None:intergenic
TTTGAGCCACCAATGCTGCC+TGG 0.397662 4_2:+55218079 None:intergenic
CAATATAAGGTTATTATCAC+TGG 0.402454 4_2:+55217717 None:intergenic
AGGAAGAATCAAATGCCAAT+AGG 0.404807 4_2:-55216751 Msa0608200:CDS
GAAACTGAAGGAGAATATAT+TGG 0.409904 4_2:-55216633 Msa0608200:CDS
TGTTGCCGGTGGTGCTTTGT+TGG 0.413551 4_2:+55219471 None:intergenic
GCTGATTTCCGCTCAACAGC+TGG 0.414676 4_2:+55219334 None:intergenic
GCATGAAAATGGTGATCTTT+CGG 0.415307 4_2:-55216480 Msa0608200:CDS
GCCTCTGGAAGTTCTCTCTC+TGG 0.419412 4_2:+55216146 None:intergenic
ATCCGAACTTGAGGCAGTTA+AGG 0.419625 4_2:-55217257 Msa0608200:CDS
TCTTCCAATGATTTAGCCTC+TGG 0.426077 4_2:+55216131 None:intergenic
CTAACTTCAAATCTTCAATC+TGG 0.431089 4_2:+55217002 None:intergenic
CCGAGCTGTTGAATTGGAAC+AGG 0.431367 4_2:-55218022 Msa0608200:CDS
CATAGCTTTCCCTTTCAGCT+TGG 0.431387 4_2:+55217029 None:intergenic
TGTTGAGCTTTCCCTCAATC+AGG 0.432554 4_2:-55216366 Msa0608200:CDS
CCATCTGCAGGAAGCTCTAA+AGG 0.434538 4_2:-55216675 Msa0608200:CDS
GTTATAGAGAACATTGATAA+TGG 0.439389 4_2:-55216041 Msa0608200:CDS
GAGCTTCTCATTTGCTTCCT+CGG 0.442024 4_2:+55218101 None:intergenic
TGAAAGCCCTCATTTGAATT+GGG 0.443283 4_2:+55215649 None:intergenic
GTTTGAGTTCTTCCTGATTG+AGG 0.445779 4_2:+55216354 None:intergenic
CCTAAACCTGTGAAAATGAA+TGG 0.446361 4_2:-55216272 Msa0608200:CDS
TTCATGTGGTTGTTCCAGAC+AGG 0.448414 4_2:+55220343 None:intergenic
ACTTCCAGAGGCTAAATCAT+TGG 0.450557 4_2:-55216135 Msa0608200:CDS
TGACATAAACAAGGAACAAA+TGG 0.457908 4_2:+55215673 None:intergenic
GAGATCTGCATCAGAATCCT+TGG 0.462775 4_2:-55217479 Msa0608200:CDS
CTCAAGCTCCTCAGTGGTTG+AGG 0.472269 4_2:+55217906 None:intergenic
TCTAAGCAACCAAGCTGAAA+GGG 0.473285 4_2:-55217038 Msa0608200:CDS
GGAAGCTTGCTCAAGAAGAA+AGG 0.475338 4_2:-55215945 Msa0608200:CDS
AGCTGAATTGACACAGTTGA+AGG 0.478624 4_2:-55217770 Msa0608200:CDS
CCTTTAGAGCTTCCTGCAGA+TGG 0.481010 4_2:+55216675 None:intergenic
GGCTCAAAAGCAGGCTAAAG+AGG 0.482156 4_2:-55218064 Msa0608200:CDS
AAGAAGAAGAAAGCTTTGCT+TGG 0.483792 4_2:-55215975 Msa0608200:CDS
TGGCTTCAAAATCAAGTACT+AGG 0.484924 4_2:-55220103 Msa0608200:intron
AGGAAGATGAGAGCAAAGAA+AGG 0.487813 4_2:-55216241 Msa0608200:CDS
GGAAGAATCAAATGCCAATA+GGG 0.488686 4_2:-55216750 Msa0608200:CDS
CATCAGCATGATTTAATGCC+TGG 0.490454 4_2:+55217842 None:intergenic
ATCAATGTTCTCTATAACAG+TGG 0.492151 4_2:+55216046 None:intergenic
AGCATTGGTGGCTCAAAAGC+AGG 0.492354 4_2:-55218073 Msa0608200:CDS
AAAACGATGAACTCCGAGCT+AGG 0.492776 4_2:-55216577 Msa0608200:CDS
CTGCTTCATTACAGATTCCA+AGG 0.493723 4_2:+55217462 None:intergenic
TTGAAATTATTGGAAGGAGA+AGG 0.495882 4_2:+55220279 None:intergenic
AGAAGCACAAAGAGTGGCCG+AGG 0.498602 4_2:-55218118 Msa0608200:CDS
GAAGCTCCAGGCAGCATTGG+TGG 0.499796 4_2:-55218085 Msa0608200:CDS
ACAAGCTCCAAGAGCTGCAA+AGG 0.501010 4_2:-55218250 Msa0608200:CDS
AGTTAAGGAACTAGAAATGA+GGG 0.504114 4_2:-55217524 Msa0608200:CDS
TTCTAAGCAACCAAGCTGAA+AGG 0.505989 4_2:-55217039 Msa0608200:CDS
ATGTCATCCCAATTCAAATG+AGG 0.512668 4_2:-55215656 Msa0608200:three_prime_UTR
TGAGAAGCTCCAGGCAGCAT+TGG 0.514376 4_2:-55218088 Msa0608200:CDS
GAGAATGGTCATGGATATGG+AGG 0.517496 4_2:-55216407 Msa0608200:CDS
GCAAAATTCACGTCTTTCTG+TGG 0.518226 4_2:-55219386 Msa0608200:CDS
TAGATTCGGCTTCCCTAGCT+CGG 0.520735 4_2:+55216564 None:intergenic
TGGTGCTTTGTTGGAACTGT+CGG 0.523110 4_2:+55219480 None:intergenic
TGAAGAAGAGAATGCGGCCG+CGG 0.524949 4_2:-55216816 Msa0608200:CDS
TTCTTGTGTTGAATCTAGCA+AGG 0.527152 4_2:+55217747 None:intergenic
TGTCATCCCAATTCAAATGA+GGG 0.527827 4_2:-55215655 Msa0608200:three_prime_UTR
GGTTGAAGAATCAAACAAGT+TGG 0.530427 4_2:-55217503 Msa0608200:CDS
GACCGAGGCTATCCATCTGC+AGG 0.531409 4_2:-55216687 Msa0608200:CDS
GCAGATCCTTCAAGCTGAGA+AGG 0.531854 4_2:-55218169 Msa0608200:CDS
GGAAGCAAATGAGAAGCTCC+AGG 0.537000 4_2:-55218097 Msa0608200:CDS
AACCACTGAGGAGCTTGAGC+GGG 0.538320 4_2:-55217902 Msa0608200:CDS
AAGTTAAGGAACTAGAAATG+AGG 0.538694 4_2:-55217525 Msa0608200:CDS
CTCAGTGGTTGAGGCAAGAG+TGG 0.539143 4_2:+55217915 None:intergenic
GGACGAAGAAGCTCAGTTGA+AGG 0.541111 4_2:-55216729 Msa0608200:CDS
TGAATAAGAAGGAAGAAGAA+TGG 0.541280 4_2:-55217984 Msa0608200:CDS
GCTTACATCAGGTGGGGTGG+CGG 0.541552 4_2:+55219303 None:intergenic
AGAGGCTAAATCATTGGAAG+AGG 0.542206 4_2:-55216129 Msa0608200:CDS
AGTTAAGGAAGAGAAAGATC+AGG 0.542809 4_2:-55217242 Msa0608200:CDS
TGCTACTCTTAAAGAGAAGG+TGG 0.543694 4_2:-55217395 Msa0608200:CDS
TGATCTTTCGGACAGCGAAA+AGG 0.544136 4_2:-55216468 Msa0608200:CDS
ACGCCGTCTTCTTATGGCTA+AGG 0.545598 4_2:-55217320 Msa0608200:CDS
CAGTTCCAACAAAGCACCAC+CGG 0.546168 4_2:-55219476 Msa0608200:CDS
GCTGTTGAATTGGAACAGGC+TGG 0.548085 4_2:-55218018 Msa0608200:CDS
TGGCCACATCCAAGGCATGC+TGG 0.548388 4_2:+55217935 None:intergenic
GGCTTTGAATTCACAGATCG+TGG 0.550956 4_2:+55219355 None:intergenic
ATTGGTTTGAAATTATTGGA+AGG 0.551236 4_2:+55220273 None:intergenic
TGTGAGGAACCAGCATGCCT+TGG 0.551371 4_2:-55217944 Msa0608200:CDS
CAATGAATTGGAGAATTCTA+GGG 0.553198 4_2:-55217152 Msa0608200:CDS
GGTTCTCCATATCATCATGT+TGG 0.555729 4_2:-55215744 Msa0608200:three_prime_UTR
AATTGAAACTGTGAATAAGA+AGG 0.556477 4_2:-55217995 Msa0608200:CDS
GGAAGATGAGAGCAAAGAAA+GGG 0.556487 4_2:-55216240 Msa0608200:CDS
CAACCACTGAGGAGCTTGAG+CGG 0.561441 4_2:-55217903 Msa0608200:CDS
CTTCCTTAGCCATAAGAAGA+CGG 0.564152 4_2:+55217317 None:intergenic
CTATTATGGCTTACATCAGG+TGG 0.565172 4_2:+55219295 None:intergenic
TTGCAACGGAGATGGCGACT+CGG 0.565960 4_2:+55219405 None:intergenic
ACTGAGTCAAAGACAGAAGA+AGG 0.566826 4_2:-55216104 Msa0608200:CDS
TACTTTCTCAGCATGAACCT+CGG 0.567598 4_2:+55217804 None:intergenic
TGAAAAGTCAAAGAAGATTG+AGG 0.568592 4_2:-55217287 Msa0608200:CDS
TGGTCATGGATATGGAGGAG+AGG 0.569474 4_2:-55216402 Msa0608200:CDS
TATTATGGCTTACATCAGGT+GGG 0.570656 4_2:+55219296 None:intergenic
GGAAGCCGAATCTATTAAGA+AGG 0.570744 4_2:-55216555 Msa0608200:CDS
GGCAAGAGTGGCCACATCCA+AGG 0.575724 4_2:+55217927 None:intergenic
AAGAAGTAGAATTCAAAATG+TGG 0.576268 4_2:-55216208 Msa0608200:CDS
AAACGATGAACTCCGAGCTA+GGG 0.576737 4_2:-55216576 Msa0608200:CDS
AGAAGTAGAATTCAAAATGT+GGG 0.576995 4_2:-55216207 Msa0608200:CDS
TGAGAACTCGAAGGCTGAGT+GGG 0.577593 4_2:-55216879 Msa0608200:CDS
GTTCTTAGCATCACACATCA+TGG 0.582449 4_2:+55217864 None:intergenic
AGCTGCTACTCTTAAAGAGA+AGG 0.582698 4_2:-55217398 Msa0608200:CDS
CATAAACAAGGAACAAATGG+TGG 0.583214 4_2:+55215676 None:intergenic
ATAGAGAACATTGATAATGG+TGG 0.585848 4_2:-55216038 Msa0608200:CDS
AACGGTTAAGAAAGATAATG+TGG 0.587116 4_2:-55220366 Msa0608200:five_prime_UTR
TTATGCAAACAGTCTGCTTG+AGG 0.587993 4_2:-55217560 Msa0608200:CDS
GCTTTGTTGGAACTGTCGGA+TGG 0.588599 4_2:+55219484 None:intergenic
AGAAGATCTAAAGAAAGCAA+AGG 0.589350 4_2:-55218193 Msa0608200:CDS
ATGTAGAACTTGAAACCTCA+AGG 0.589981 4_2:-55217594 Msa0608200:CDS
GAACCAGCATGCCTTGGATG+TGG 0.590468 4_2:-55217938 Msa0608200:CDS
AAGACAGAAGAAGGTGGTGA+TGG 0.591342 4_2:-55216095 Msa0608200:CDS
AGGGAATGAGTTATGATGAG+AGG 0.592178 4_2:-55217651 Msa0608200:CDS
ATGGCTTACATCAGGTGGGG+TGG 0.594034 4_2:+55219300 None:intergenic
GCGTTCTGAATCCTCAAGAT+CGG 0.596202 4_2:+55217339 None:intergenic
GGCTCTTGAATCCGAACTTG+AGG 0.596607 4_2:-55217266 Msa0608200:CDS
CGAATCTATTAAGAAGGTGG+AGG 0.596983 4_2:-55216549 Msa0608200:CDS
TCAGTTGAAGGAAAATCTGA+AGG 0.598448 4_2:-55216717 Msa0608200:CDS
CAAGCTCCAAGAGCTGCAAA+GGG 0.600838 4_2:-55218249 Msa0608200:CDS
CAAACAGTCTGCTTGAGGAG+TGG 0.607787 4_2:-55217555 Msa0608200:CDS
CCTGTTCCAATTCAACAGCT+CGG 0.607837 4_2:+55218022 None:intergenic
GTCTGAGAACGTGAAACTGA+AGG 0.607986 4_2:-55216645 Msa0608200:CDS
CCTTCAAGCTGAGAAGGAGA+AGG 0.610724 4_2:-55218163 Msa0608200:CDS
AGCCGAATCTATTAAGAAGG+TGG 0.611971 4_2:-55216552 Msa0608200:CDS
GAAAATGAATGGAAAACCAA+AGG 0.613917 4_2:-55216261 Msa0608200:CDS
GAATGTGTTTGAGAACTCGA+AGG 0.623748 4_2:-55216888 Msa0608200:CDS
TAATAGGGTCTGCACATGAG+AGG 0.625836 4_2:+55217195 None:intergenic
AACCCGCTCAAGCTCCTCAG+TGG 0.633744 4_2:+55217900 None:intergenic
CTCAAGAAAGAACTCGACAA+GGG 0.633999 4_2:-55217670 Msa0608200:CDS
TCTCAAGAAAGAACTCGACA+AGG 0.634380 4_2:-55217671 Msa0608200:CDS
TTCCTGCAGATGGATAGCCT+CGG 0.644406 4_2:+55216685 None:intergenic
ATAAGATTCAGCCGTCCTTG+AGG 0.647778 4_2:+55217579 None:intergenic
TTATTTGCTTAAACAAACTG+AGG 0.648313 4_2:-55216771 Msa0608200:CDS
ATTATGGCTTACATCAGGTG+GGG 0.650435 4_2:+55219297 None:intergenic
TTGAGAACTCGAAGGCTGAG+TGG 0.651278 4_2:-55216880 Msa0608200:CDS
GTTGAAAGAAGCACAAAGAG+TGG 0.652851 4_2:-55218124 Msa0608200:CDS
TGGAGGAGAGGAAATTCCAA+AGG 0.653330 4_2:-55216390 Msa0608200:CDS
GAATTGGGATGACATAAACA+AGG 0.659304 4_2:+55215664 None:intergenic
ATTCAAAGCCAGCTGTTGAG+CGG 0.660562 4_2:-55219342 Msa0608200:CDS
GCTACTCTTAAAGAGAAGGT+GGG 0.661481 4_2:-55217394 Msa0608200:CDS
AGCTTGCTCAAGAAGAAAGG+TGG 0.662119 4_2:-55215942 Msa0608200:CDS
GAAAACTGAAGAAGAGAATG+CGG 0.663328 4_2:-55216822 Msa0608200:CDS
AGTCAATGCTTGATGAAGCG+CGG 0.666394 4_2:-55216952 Msa0608200:CDS
TGATGCAGCTAAAGTTGCCG+AGG 0.669959 4_2:-55217821 Msa0608200:CDS
AGAACTTGAAACCTCAAGGA+CGG 0.671436 4_2:-55217590 Msa0608200:CDS
TCTGAAGGAAGTTGAGACCG+AGG 0.687621 4_2:-55216702 Msa0608200:CDS
CACTCTTGCCTCAACCACTG+AGG 0.695834 4_2:-55217914 Msa0608200:CDS
ACCAGAGAGAGAACTTCCAG+AGG 0.698874 4_2:-55216147 Msa0608200:CDS
GATGTGTGATGCTAAGAACC+AGG 0.701568 4_2:-55217860 Msa0608200:CDS
GAGTCAAAGACAGAAGAAGG+TGG 0.711580 4_2:-55216101 Msa0608200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAACAAAAAAAAAA+TGG + chr4_2:55216029-55216048 None:intergenic 10.0%
!!! AATATAGATTTTATAAGAAA+TGG - chr4_2:55220214-55220233 Msa0608200:five_prime_UTR 10.0%
!!! ATATAGATTTTATAAGAAAT+GGG - chr4_2:55220215-55220234 Msa0608200:five_prime_UTR 10.0%
!!! TTTTTTGTTTTACTTTTTGT+CGG - chr4_2:55216033-55216052 Msa0608200:CDS 15.0%
!! AAAAATAGTAATTGAAATGA+AGG + chr4_2:55216831-55216850 None:intergenic 15.0%
!!! TTCATTTCAATTACTATTTT+TGG - chr4_2:55216830-55216849 Msa0608200:CDS 15.0%
!!! TCATTTCAATTACTATTTTT+GGG - chr4_2:55216831-55216850 Msa0608200:CDS 15.0%
!!! TAATAATTTGACATTTTTGT+GGG - chr4_2:55216952-55216971 Msa0608200:CDS 15.0%
!!! AATATTGTTTAGGATTTTTT+TGG - chr4_2:55220243-55220262 Msa0608200:five_prime_UTR 15.0%
!!! TGAAATTGGTTTGAAATTAT+TGG + chr4_2:55215754-55215773 None:intergenic 20.0%
!!! AATAAAGGTTTTTGTGAAAT+TGG + chr4_2:55215768-55215787 None:intergenic 20.0%
!!! TTTTTTTGTTGAACTATGAA+TGG + chr4_2:55215862-55215881 None:intergenic 20.0%
!! TCTATGTACAATTCAAAAAT+TGG - chr4_2:55216206-55216225 Msa0608200:CDS 20.0%
!! CTATGTACAATTCAAAAATT+GGG - chr4_2:55216207-55216226 Msa0608200:CDS 20.0%
!! TCAACAATGTATTGTAAATA+AGG + chr4_2:55216305-55216324 None:intergenic 20.0%
!!! AAATAAGAATTGTTTTCTTG+TGG - chr4_2:55216388-55216407 Msa0608200:CDS 20.0%
!!! TTGCTAACTTTATTTACTTT+TGG + chr4_2:55216575-55216594 None:intergenic 20.0%
!!! CTAATAATTTGACATTTTTG+TGG - chr4_2:55216951-55216970 Msa0608200:CDS 20.0%
!!! AATAATTTGACATTTTTGTG+GGG - chr4_2:55216953-55216972 Msa0608200:CDS 20.0%
!! ATTCTGTAATGTCTATTATT+TGG - chr4_2:55217015-55217034 Msa0608200:CDS 20.0%
!! GTAAAATACTGTTAAACATA+AGG + chr4_2:55217075-55217094 None:intergenic 20.0%
!! ATTATTGATATTATGAAGCA+CGG - chr4_2:55217323-55217342 Msa0608200:CDS 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG + chr4_2:55218843-55218862 None:intergenic 20.0%
!! GGAAAAAGAAATAAATAGAT+TGG - chr4_2:55219225-55219244 Msa0608200:intron 20.0%
!!! ATTGGTTTGAAATTATTGGA+AGG + chr4_2:55215750-55215769 None:intergenic 25.0%
! GTAGTAAGTTAGAAGAATAA+AGG + chr4_2:55215783-55215802 None:intergenic 25.0%
! TATACTGTTAAGATCTGAAT+TGG - chr4_2:55215976-55215995 Msa0608200:CDS 25.0%
! ATACTGTTAAGATCTGAATT+GGG - chr4_2:55215977-55215996 Msa0608200:CDS 25.0%
!!! TGTAATTTGTTTTTTGCTTG+AGG - chr4_2:55216056-55216075 Msa0608200:CDS 25.0%
! CTAGTAATTATGATATGCTA+TGG - chr4_2:55216088-55216107 Msa0608200:CDS 25.0%
!! ATGTTCATCTGTTGAAATTT+TGG - chr4_2:55216161-55216180 Msa0608200:CDS 25.0%
!! TGATTTTGTACAATTAAGCT+TGG - chr4_2:55216275-55216294 Msa0608200:CDS 25.0%
! TCAATTTCCAATCAAATAGA+TGG + chr4_2:55216421-55216440 None:intergenic 25.0%
!!! TTGTGTTTTGTTATCTTGAA+TGG - chr4_2:55216450-55216469 Msa0608200:CDS 25.0%
! ACACTAAATGCAATCTATTA+TGG + chr4_2:55216742-55216761 None:intergenic 25.0%
! AATAGACATTACAGAATGAA+AGG + chr4_2:55217012-55217031 None:intergenic 25.0%
! TGTAATGTCTATTATTTGGT+TGG - chr4_2:55217019-55217038 Msa0608200:CDS 25.0%
! TAAGTAAAAACAAGTGACAT+GGG + chr4_2:55217552-55217571 None:intergenic 25.0%
! TTAAGTAAAAACAAGTGACA+TGG + chr4_2:55217553-55217572 None:intergenic 25.0%
! TGTACTTATTATGTATTGCT+TGG - chr4_2:55217735-55217754 Msa0608200:CDS 25.0%
! AATTGAAACTGTGAATAAGA+AGG - chr4_2:55218025-55218044 Msa0608200:CDS 25.0%
! CAATATAAGGTTATTATCAC+TGG + chr4_2:55218306-55218325 None:intergenic 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG + chr4_2:55218844-55218863 None:intergenic 25.0%
! AAACAAACTCATCAATGAAT+TGG - chr4_2:55218856-55218875 Msa0608200:intron 25.0%
! AGAAGAAGAAAAAAGCAAAA+AGG - chr4_2:55218892-55218911 Msa0608200:intron 25.0%
!!! GATTTGAAGTTAGTCTTAAA+AGG - chr4_2:55219028-55219047 Msa0608200:intron 25.0%
!!! TCTATTTATTTCTTTTTCCG+CGG + chr4_2:55219224-55219243 None:intergenic 25.0%
! TTATTTGCTTAAACAAACTG+AGG - chr4_2:55219249-55219268 Msa0608200:intron 25.0%
!! ATTTTGAATTCTACTTCTTC+TGG + chr4_2:55219811-55219830 None:intergenic 25.0%
! AAGAAGTAGAATTCAAAATG+TGG - chr4_2:55219812-55219831 Msa0608200:intron 25.0%
! AGAAGTAGAATTCAAAATGT+GGG - chr4_2:55219813-55219832 Msa0608200:intron 25.0%
! GTTATAGAGAACATTGATAA+TGG - chr4_2:55219979-55219998 Msa0608200:intron 25.0%
!!! TTGAATGTTGTTTCTATTTC+TGG + chr4_2:55220110-55220129 None:intergenic 25.0%
AACGGTTAAGAAAGATAATG+TGG - chr4_2:55215654-55215673 Msa0608200:three_prime_UTR 30.0%
!!! AAATTGAGTTGGTTTTCATG+TGG + chr4_2:55215694-55215713 None:intergenic 30.0%
CAGAAACTGAAAAATTGAGT+TGG + chr4_2:55215705-55215724 None:intergenic 30.0%
TTGAAATTATTGGAAGGAGA+AGG + chr4_2:55215744-55215763 None:intergenic 30.0%
GAGAAACACAACAACAATTT+AGG + chr4_2:55215812-55215831 None:intergenic 30.0%
!!! AATTTGTTTTTTGCTTGAGG+AGG - chr4_2:55216059-55216078 Msa0608200:CDS 30.0%
AATTAAGCATCCAGAATCAT+TGG + chr4_2:55216366-55216385 None:intergenic 30.0%
CTTAGATCCATCTATTTGAT+TGG - chr4_2:55216411-55216430 Msa0608200:CDS 30.0%
!!! GAATGGTGTGTTACTTTTAA+TGG - chr4_2:55216467-55216486 Msa0608200:CDS 30.0%
!!! TTATTTACTTTTGGTGTTGC+CGG + chr4_2:55216566-55216585 None:intergenic 30.0%
AATCTATTATGGCTTACATC+AGG + chr4_2:55216731-55216750 None:intergenic 30.0%
TGTCTATTATTTGGTTGGAT+TGG - chr4_2:55217024-55217043 Msa0608200:CDS 30.0%
!! TATTATTTGGTTGGATTGGT+TGG - chr4_2:55217028-55217047 Msa0608200:CDS 30.0%
AATACTGTTAAACATAAGGC+AGG + chr4_2:55217071-55217090 None:intergenic 30.0%
CACTAGATATTTGAATCAAC+TGG + chr4_2:55217139-55217158 None:intergenic 30.0%
AATTGACAGCAAAAAAGAAG+TGG + chr4_2:55217250-55217269 None:intergenic 30.0%
GATTCAAGTCATAAACCAAA+TGG + chr4_2:55217299-55217318 None:intergenic 30.0%
TTTCCAATTATTAGCTGTGT+CGG + chr4_2:55217390-55217409 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr4_2:55217421-55217440 Msa0608200:CDS 30.0%
TCATCTACTAATATGAAGCA+CGG + chr4_2:55217510-55217529 None:intergenic 30.0%
AGTAAAATTCGACTCTTGAT+TGG - chr4_2:55217613-55217632 Msa0608200:CDS 30.0%
GTAAAATTCGACTCTTGATT+GGG - chr4_2:55217614-55217633 Msa0608200:CDS 30.0%
! TTATCATGCTCTCTTTTGAA+AGG - chr4_2:55217697-55217716 Msa0608200:CDS 30.0%
AGAAGATCTAAAGAAAGCAA+AGG - chr4_2:55217827-55217846 Msa0608200:CDS 30.0%
TGAATAAGAAGGAAGAAGAA+TGG - chr4_2:55218036-55218055 Msa0608200:CDS 30.0%
CTGCTTTCAACTTCAATATA+AGG + chr4_2:55218319-55218338 None:intergenic 30.0%
AAGTTAAGGAACTAGAAATG+AGG - chr4_2:55218495-55218514 Msa0608200:intron 30.0%
AGTTAAGGAACTAGAAATGA+GGG - chr4_2:55218496-55218515 Msa0608200:intron 30.0%
TGAAAAGTCAAAGAAGATTG+AGG - chr4_2:55218733-55218752 Msa0608200:intron 30.0%
TCAATGAATTGGAGAATTCT+AGG - chr4_2:55218867-55218886 Msa0608200:intron 30.0%
CAATGAATTGGAGAATTCTA+GGG - chr4_2:55218868-55218887 Msa0608200:intron 30.0%
AGAAAAAAGCAAAAAGGCAA+TGG - chr4_2:55218898-55218917 Msa0608200:intron 30.0%
GTTGCTTAGAAAATTCTCTT+TGG + chr4_2:55218972-55218991 None:intergenic 30.0%
CTAACTTCAAATCTTCAATC+TGG + chr4_2:55219021-55219040 None:intergenic 30.0%
! TCTCTTCTTCAGTTTTCTTT+AGG + chr4_2:55219195-55219214 None:intergenic 30.0%
GAAACTGAAGGAGAATATAT+TGG - chr4_2:55219387-55219406 Msa0608200:CDS 30.0%
TCAGAAAATTCAACGACTTT+AGG + chr4_2:55219592-55219611 None:intergenic 30.0%
!! GTTGAATTTTCTGAAGAGAA+TGG - chr4_2:55219598-55219617 Msa0608200:intron 30.0%
GAAAATGAATGGAAAACCAA+AGG - chr4_2:55219759-55219778 Msa0608200:intron 30.0%
! GAGAGCTTTGATAAGATAAA+TGG - chr4_2:55219949-55219968 Msa0608200:intron 30.0%
ATCAATGTTCTCTATAACAG+TGG + chr4_2:55219977-55219996 None:intergenic 30.0%
!! ATAGAGAACATTGATAATGG+TGG - chr4_2:55219982-55220001 Msa0608200:intron 30.0%
!! TGTTGTTGTTCTTCTTTTAC+TGG + chr4_2:55220015-55220034 None:intergenic 30.0%
AAAGCTTTGCTTGGAAAATT+TGG - chr4_2:55220054-55220073 Msa0608200:intron 30.0%
ATGGGCTTGTAATATTGTTT+AGG - chr4_2:55220233-55220252 Msa0608200:five_prime_UTR 30.0%
!!! GTTTAGGATTTTTTTGGCTT+TGG - chr4_2:55220249-55220268 Msa0608200:five_prime_UTR 30.0%
! AATGGTGGAAAAAGAATAGT+TGG + chr4_2:55220332-55220351 None:intergenic 30.0%
TGACATAAACAAGGAACAAA+TGG + chr4_2:55220350-55220369 None:intergenic 30.0%
!! TACTTGTTACTTTGCTTCCA+TGG - chr4_2:55215897-55215916 Msa0608200:three_prime_UTR 35.0%
!!! AGTACTTGATTTTGAAGCCA+TGG + chr4_2:55215917-55215936 None:intergenic 35.0%
TGGCTTCAAAATCAAGTACT+AGG - chr4_2:55215917-55215936 Msa0608200:exon 35.0%
! AGTACTAGGTTAGTCAAGTT+TGG - chr4_2:55215931-55215950 Msa0608200:CDS 35.0%
! GAAAGACGTGAATTTTGCAA+CGG + chr4_2:55216632-55216651 None:intergenic 35.0%
TATTATGGCTTACATCAGGT+GGG + chr4_2:55216727-55216746 None:intergenic 35.0%
TTCAGTAGACTTGAGATGTT+AGG + chr4_2:55216874-55216893 None:intergenic 35.0%
! GTCTACTGAAAAGTGTGATA+AGG - chr4_2:55216884-55216903 Msa0608200:CDS 35.0%
TATCGAATCGAGATATGACT+CGG + chr4_2:55217105-55217124 None:intergenic 35.0%
GATATTATGAAGCACGGATA+CGG - chr4_2:55217329-55217348 Msa0608200:CDS 35.0%
AAAATTCCGAGCTGTTGAAT+TGG - chr4_2:55217992-55218011 Msa0608200:CDS 35.0%
! AAAAAGAGCTTGAAAGTGTG+AGG - chr4_2:55218060-55218079 Msa0608200:CDS 35.0%
TTCTTGTGTTGAATCTAGCA+AGG + chr4_2:55218276-55218295 None:intergenic 35.0%
ATGTAGAACTTGAAACCTCA+AGG - chr4_2:55218426-55218445 Msa0608200:intron 35.0%
GGAGTGGAAAAAGAAAGTTA+AGG - chr4_2:55218481-55218500 Msa0608200:intron 35.0%
GGTTGAAGAATCAAACAAGT+TGG - chr4_2:55218517-55218536 Msa0608200:intron 35.0%
AGTTAAGGAAGAGAAAGATC+AGG - chr4_2:55218778-55218797 Msa0608200:intron 35.0%
GAAAACTGAAGAAGAGAATG+CGG - chr4_2:55219198-55219217 Msa0608200:intron 35.0%
AGGAAGAATCAAATGCCAAT+AGG - chr4_2:55219269-55219288 Msa0608200:intron 35.0%
GGAAGAATCAAATGCCAATA+GGG - chr4_2:55219270-55219289 Msa0608200:intron 35.0%
TCAGTTGAAGGAAAATCTGA+AGG - chr4_2:55219303-55219322 Msa0608200:intron 35.0%
CTCCACCTTCTTAATAGATT+CGG + chr4_2:55219473-55219492 None:intergenic 35.0%
AATCACACTGAGCATGAAAA+TGG - chr4_2:55219529-55219548 Msa0608200:intron 35.0%
GCATGAAAATGGTGATCTTT+CGG - chr4_2:55219540-55219559 Msa0608200:intron 35.0%
!! TTTTCTGAAGAGAATGGTCA+TGG - chr4_2:55219604-55219623 Msa0608200:intron 35.0%
! TTTGAGTTCTTCCTGATTGA+GGG + chr4_2:55219668-55219687 None:intergenic 35.0%
! CCATTCATTTTCACAGGTTT+AGG + chr4_2:55219751-55219770 None:intergenic 35.0%
CCTAAACCTGTGAAAATGAA+TGG - chr4_2:55219748-55219767 Msa0608200:intron 35.0%
! GGTTTTCCATTCATTTTCAC+AGG + chr4_2:55219757-55219776 None:intergenic 35.0%
AAGAAGAAGAAAGCTTTGCT+TGG - chr4_2:55220045-55220064 Msa0608200:intron 35.0%
!!! GATTTTTTTGGCTTTGGTTG+TGG - chr4_2:55220255-55220274 Msa0608200:five_prime_UTR 35.0%
TTGCTACCAACATGATGATA+TGG + chr4_2:55220285-55220304 None:intergenic 35.0%
CATAAACAAGGAACAAATGG+TGG + chr4_2:55220347-55220366 None:intergenic 35.0%
GAATTGGGATGACATAAACA+AGG + chr4_2:55220359-55220378 None:intergenic 35.0%
ATGTCATCCCAATTCAAATG+AGG - chr4_2:55220364-55220383 Msa0608200:five_prime_UTR 35.0%
TGTCATCCCAATTCAAATGA+GGG - chr4_2:55220365-55220384 Msa0608200:five_prime_UTR 35.0%
TGAAAGCCCTCATTTGAATT+GGG + chr4_2:55220374-55220393 None:intergenic 35.0%
!! GCTGTTGTTTCCAATGATTC+TGG - chr4_2:55216353-55216372 Msa0608200:CDS 40.0%
GCAAAATTCACGTCTTTCTG+TGG - chr4_2:55216634-55216653 Msa0608200:CDS 40.0%
ATTATGGCTTACATCAGGTG+GGG + chr4_2:55216726-55216745 None:intergenic 40.0%
CTATTATGGCTTACATCAGG+TGG + chr4_2:55216728-55216747 None:intergenic 40.0%
TTGAACTCGAGATGAGATTC+AGG + chr4_2:55217177-55217196 None:intergenic 40.0%
GAACCATTCTAACGAATCTC+TGG - chr4_2:55217205-55217224 Msa0608200:CDS 40.0%
TAGCCAGAGATTCGTTAGAA+TGG + chr4_2:55217211-55217230 None:intergenic 40.0%
GACAGCAAAAAAGAAGTGGT+TGG + chr4_2:55217246-55217265 None:intergenic 40.0%
! GACACTTCTCTTTTGCCATT+TGG - chr4_2:55217281-55217300 Msa0608200:CDS 40.0%
! GTTGAAAGAAGCACAAAGAG+TGG - chr4_2:55217896-55217915 Msa0608200:CDS 40.0%
!! AGCTCGGAATTTTTCGATCT+CGG + chr4_2:55217985-55218004 None:intergenic 40.0%
GTTCTTAGCATCACACATCA+TGG + chr4_2:55218159-55218178 None:intergenic 40.0%
CATCAGCATGATTTAATGCC+TGG + chr4_2:55218181-55218200 None:intergenic 40.0%
TACTTTCTCAGCATGAACCT+CGG + chr4_2:55218219-55218238 None:intergenic 40.0%
AGCTGAATTGACACAGTTGA+AGG - chr4_2:55218250-55218269 Msa0608200:CDS 40.0%
TCTCAAGAAAGAACTCGACA+AGG - chr4_2:55218349-55218368 Msa0608200:intron 40.0%
CTCAAGAAAGAACTCGACAA+GGG - chr4_2:55218350-55218369 Msa0608200:intron 40.0%
AGGGAATGAGTTATGATGAG+AGG - chr4_2:55218369-55218388 Msa0608200:intron 40.0%
AGAACTTGAAACCTCAAGGA+CGG - chr4_2:55218430-55218449 Msa0608200:intron 40.0%
TTATGCAAACAGTCTGCTTG+AGG - chr4_2:55218460-55218479 Msa0608200:intron 40.0%
CTGCTTCATTACAGATTCCA+AGG + chr4_2:55218561-55218580 None:intergenic 40.0%
AGCTGCTACTCTTAAAGAGA+AGG - chr4_2:55218622-55218641 Msa0608200:intron 40.0%
TGCTACTCTTAAAGAGAAGG+TGG - chr4_2:55218625-55218644 Msa0608200:intron 40.0%
GCTACTCTTAAAGAGAAGGT+GGG - chr4_2:55218626-55218645 Msa0608200:intron 40.0%
CTTCCTTAGCCATAAGAAGA+CGG + chr4_2:55218706-55218725 None:intergenic 40.0%
TTCCTTAACTGCCTCAAGTT+CGG + chr4_2:55218768-55218787 None:intergenic 40.0%
TTCTAAGCAACCAAGCTGAA+AGG - chr4_2:55218981-55219000 Msa0608200:intron 40.0%
TCTAAGCAACCAAGCTGAAA+GGG - chr4_2:55218982-55219001 Msa0608200:intron 40.0%
GAATGTGTTTGAGAACTCGA+AGG - chr4_2:55219132-55219151 Msa0608200:intron 40.0%
GGAAGCCGAATCTATTAAGA+AGG - chr4_2:55219465-55219484 Msa0608200:CDS 40.0%
AGCCGAATCTATTAAGAAGG+TGG - chr4_2:55219468-55219487 Msa0608200:CDS 40.0%
CGAATCTATTAAGAAGGTGG+AGG - chr4_2:55219471-55219490 Msa0608200:CDS 40.0%
TTCATGCTCAGTGTGATTTC+TGG + chr4_2:55219527-55219546 None:intergenic 40.0%
GAAGAGAATGGTCATGGATA+TGG - chr4_2:55219610-55219629 Msa0608200:intron 40.0%
! GTTTGAGTTCTTCCTGATTG+AGG + chr4_2:55219669-55219688 None:intergenic 40.0%
TCTTTGCTCTCATCTTCCTT+TGG + chr4_2:55219778-55219797 None:intergenic 40.0%
AGGAAGATGAGAGCAAAGAA+AGG - chr4_2:55219779-55219798 Msa0608200:intron 40.0%
GGAAGATGAGAGCAAAGAAA+GGG - chr4_2:55219780-55219799 Msa0608200:intron 40.0%
GAGTTGCACGATTGAGAAAA+AGG - chr4_2:55219837-55219856 Msa0608200:intron 40.0%
ACTTCCAGAGGCTAAATCAT+TGG - chr4_2:55219885-55219904 Msa0608200:intron 40.0%
TCTTCCAATGATTTAGCCTC+TGG + chr4_2:55219892-55219911 None:intergenic 40.0%
AGAGGCTAAATCATTGGAAG+AGG - chr4_2:55219891-55219910 Msa0608200:intron 40.0%
ACTGAGTCAAAGACAGAAGA+AGG - chr4_2:55219916-55219935 Msa0608200:intron 40.0%
GGTTCTCCATATCATCATGT+TGG - chr4_2:55220276-55220295 Msa0608200:five_prime_UTR 40.0%
GAAAGATAATGTGGCCTGTC+TGG - chr4_2:55215663-55215682 Msa0608200:three_prime_UTR 45.0%
TTCATGTGGTTGTTCCAGAC+AGG + chr4_2:55215680-55215699 None:intergenic 45.0%
! TGGTGCTTTGTTGGAACTGT+CGG + chr4_2:55216543-55216562 None:intergenic 45.0%
!!! TTTACTTTTGGTGTTGCCGG+TGG + chr4_2:55216563-55216582 None:intergenic 45.0%
! CGTGAATTTTGCAACGGAGA+TGG + chr4_2:55216626-55216645 None:intergenic 45.0%
!! GGCTTTGAATTCACAGATCG+TGG + chr4_2:55216668-55216687 None:intergenic 45.0%
ATTCAAAGCCAGCTGTTGAG+CGG - chr4_2:55216678-55216697 Msa0608200:CDS 45.0%
! GGAAACATCTGAGATGTGCA+AGG - chr4_2:55216905-55216924 Msa0608200:CDS 45.0%
TAAGGCAGGAACATCTTCAG+CGG + chr4_2:55217057-55217076 None:intergenic 45.0%
ACGCCGACACAGCTAATAAT+TGG - chr4_2:55217384-55217403 Msa0608200:CDS 45.0%
GAGCTTCTCATTTGCTTCCT+CGG + chr4_2:55217922-55217941 None:intergenic 45.0%
CCTGTTCCAATTCAACAGCT+CGG + chr4_2:55218001-55218020 None:intergenic 45.0%
GATGTGTGATGCTAAGAACC+AGG - chr4_2:55218160-55218179 Msa0608200:CDS 45.0%
ATAAGATTCAGCCGTCCTTG+AGG + chr4_2:55218444-55218463 None:intergenic 45.0%
GAGATCTGCATCAGAATCCT+TGG - chr4_2:55218541-55218560 Msa0608200:intron 45.0%
GAGACAAAAAGCCGATCTTG+AGG - chr4_2:55218670-55218689 Msa0608200:intron 45.0%
! GCGTTCTGAATCCTCAAGAT+CGG + chr4_2:55218684-55218703 None:intergenic 45.0%
TTCAGAACGCCGTCTTCTTA+TGG - chr4_2:55218694-55218713 Msa0608200:intron 45.0%
ATCCGAACTTGAGGCAGTTA+AGG - chr4_2:55218763-55218782 Msa0608200:intron 45.0%
TAATAGGGTCTGCACATGAG+AGG + chr4_2:55218828-55218847 None:intergenic 45.0%
CATAGCTTTCCCTTTCAGCT+TGG + chr4_2:55218994-55219013 None:intergenic 45.0%
AGTCAATGCTTGATGAAGCG+CGG - chr4_2:55219068-55219087 Msa0608200:intron 45.0%
GTCTGAGAACGTGAAACTGA+AGG - chr4_2:55219375-55219394 Msa0608200:CDS 45.0%
AAAACGATGAACTCCGAGCT+AGG - chr4_2:55219443-55219462 Msa0608200:CDS 45.0%
AAACGATGAACTCCGAGCTA+GGG - chr4_2:55219444-55219463 Msa0608200:CDS 45.0%
GGAGGAGTTGTCAAAGTTAC+TGG - chr4_2:55219489-55219508 Msa0608200:CDS 45.0%
TGATCTTTCGGACAGCGAAA+AGG - chr4_2:55219552-55219571 Msa0608200:intron 45.0%
GAGAATGGTCATGGATATGG+AGG - chr4_2:55219613-55219632 Msa0608200:intron 45.0%
TGGAGGAGAGGAAATTCCAA+AGG - chr4_2:55219630-55219649 Msa0608200:intron 45.0%
AGGGAAAGCTCAACAACCTT+TGG + chr4_2:55219649-55219668 None:intergenic 45.0%
TGTTGAGCTTTCCCTCAATC+AGG - chr4_2:55219654-55219673 Msa0608200:intron 45.0%
GAGTCAAAGACAGAAGAAGG+TGG - chr4_2:55219919-55219938 Msa0608200:intron 45.0%
AAGACAGAAGAAGGTGGTGA+TGG - chr4_2:55219925-55219944 Msa0608200:intron 45.0%
! GGAAGCTTGCTCAAGAAGAA+AGG - chr4_2:55220075-55220094 Msa0608200:intron 45.0%
! AGCTTGCTCAAGAAGAAAGG+TGG - chr4_2:55220078-55220097 Msa0608200:intron 45.0%
! GCTTTGTTGGAACTGTCGGA+TGG + chr4_2:55216539-55216558 None:intergenic 50.0%
! CAGTTCCAACAAAGCACCAC+CGG - chr4_2:55216544-55216563 Msa0608200:CDS 50.0%
!! TCGGATGCTGATTTGGTCAC+TGG + chr4_2:55216599-55216618 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr4_2:55217335-55217354 Msa0608200:CDS 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG - chr4_2:55217432-55217451 Msa0608200:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + chr4_2:55217499-55217518 None:intergenic 50.0%
CGACTCTTGATTGGGAAAGC+AGG - chr4_2:55217622-55217641 Msa0608200:CDS 50.0%
ACAAGCTCCAAGAGCTGCAA+AGG - chr4_2:55217770-55217789 Msa0608200:CDS 50.0%
CAAGCTCCAAGAGCTGCAAA+GGG - chr4_2:55217771-55217790 Msa0608200:CDS 50.0%
TCTGAACCCTTTGCAGCTCT+TGG + chr4_2:55217780-55217799 None:intergenic 50.0%
GCAGATCCTTCAAGCTGAGA+AGG - chr4_2:55217851-55217870 Msa0608200:CDS 50.0%
CCTTCTCCTTCTCAGCTTGA+AGG + chr4_2:55217860-55217879 None:intergenic 50.0%
CCTTCAAGCTGAGAAGGAGA+AGG - chr4_2:55217857-55217876 Msa0608200:CDS 50.0%
GGAAGCAAATGAGAAGCTCC+AGG - chr4_2:55217923-55217942 Msa0608200:CDS 50.0%
!! AGCATTGGTGGCTCAAAAGC+AGG - chr4_2:55217947-55217966 Msa0608200:CDS 50.0%
GGCTCAAAAGCAGGCTAAAG+AGG - chr4_2:55217956-55217975 Msa0608200:CDS 50.0%
CCGAGCTGTTGAATTGGAAC+AGG - chr4_2:55217998-55218017 Msa0608200:CDS 50.0%
GCTGTTGAATTGGAACAGGC+TGG - chr4_2:55218002-55218021 Msa0608200:CDS 50.0%
TGATGCAGCTAAAGTTGCCG+AGG - chr4_2:55218199-55218218 Msa0608200:CDS 50.0%
CAAACAGTCTGCTTGAGGAG+TGG - chr4_2:55218465-55218484 Msa0608200:intron 50.0%
ACGCCGTCTTCTTATGGCTA+AGG - chr4_2:55218700-55218719 Msa0608200:intron 50.0%
GGCTCTTGAATCCGAACTTG+AGG - chr4_2:55218754-55218773 Msa0608200:intron 50.0%
TTGAGAACTCGAAGGCTGAG+TGG - chr4_2:55219140-55219159 Msa0608200:intron 50.0%
TGAGAACTCGAAGGCTGAGT+GGG - chr4_2:55219141-55219160 Msa0608200:intron 50.0%
CTGAGCTTCTTCGTCCCTAT+TGG + chr4_2:55219287-55219306 None:intergenic 50.0%
GGACGAAGAAGCTCAGTTGA+AGG - chr4_2:55219291-55219310 Msa0608200:intron 50.0%
TCTGAAGGAAGTTGAGACCG+AGG - chr4_2:55219318-55219337 Msa0608200:CDS 50.0%
TTCCTGCAGATGGATAGCCT+CGG + chr4_2:55219338-55219357 None:intergenic 50.0%
!! CCTTTAGAGCTTCCTGCAGA+TGG + chr4_2:55219348-55219367 None:intergenic 50.0%
! CCATCTGCAGGAAGCTCTAA+AGG - chr4_2:55219345-55219364 Msa0608200:CDS 50.0%
TAGATTCGGCTTCCCTAGCT+CGG + chr4_2:55219459-55219478 None:intergenic 50.0%
TGGTCATGGATATGGAGGAG+AGG - chr4_2:55219618-55219637 Msa0608200:intron 50.0%
ACCAGAGAGAGAACTTCCAG+AGG - chr4_2:55219873-55219892 Msa0608200:intron 50.0%
TGTTGCCGGTGGTGCTTTGT+TGG + chr4_2:55216552-55216571 None:intergenic 55.0%
! TGGCGACTCGGATGCTGATT+TGG + chr4_2:55216606-55216625 None:intergenic 55.0%
TTGCAACGGAGATGGCGACT+CGG + chr4_2:55216618-55216637 None:intergenic 55.0%
! GCTGATTTCCGCTCAACAGC+TGG + chr4_2:55216689-55216708 None:intergenic 55.0%
ATGGCTTACATCAGGTGGGG+TGG + chr4_2:55216723-55216742 None:intergenic 55.0%
ACACGACACGTGTCCTACAC+CGG - chr4_2:55217461-55217480 Msa0608200:CDS 55.0%
! AGAAGCACAAAGAGTGGCCG+AGG - chr4_2:55217902-55217921 Msa0608200:CDS 55.0%
TGAGAAGCTCCAGGCAGCAT+TGG - chr4_2:55217932-55217951 Msa0608200:CDS 55.0%
TTTGAGCCACCAATGCTGCC+TGG + chr4_2:55217944-55217963 None:intergenic 55.0%
TGTGAGGAACCAGCATGCCT+TGG - chr4_2:55218076-55218095 Msa0608200:CDS 55.0%
GAACCAGCATGCCTTGGATG+TGG - chr4_2:55218082-55218101 Msa0608200:CDS 55.0%
CTCAGTGGTTGAGGCAAGAG+TGG + chr4_2:55218108-55218127 None:intergenic 55.0%
CACTCTTGCCTCAACCACTG+AGG - chr4_2:55218106-55218125 Msa0608200:CDS 55.0%
CTCAAGCTCCTCAGTGGTTG+AGG + chr4_2:55218117-55218136 None:intergenic 55.0%
CAACCACTGAGGAGCTTGAG+CGG - chr4_2:55218117-55218136 Msa0608200:CDS 55.0%
AACCACTGAGGAGCTTGAGC+GGG - chr4_2:55218118-55218137 Msa0608200:CDS 55.0%
TGAAGAAGAGAATGCGGCCG+CGG - chr4_2:55219204-55219223 Msa0608200:intron 55.0%
! GCCTCTGGAAGTTCTCTCTC+TGG + chr4_2:55219877-55219896 None:intergenic 55.0%
GCTTACATCAGGTGGGGTGG+CGG + chr4_2:55216720-55216739 None:intergenic 60.0%
ACGGATACGGACACGGACAC+CGG - chr4_2:55217342-55217361 Msa0608200:CDS 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr4_2:55217364-55217383 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr4_2:55217438-55217457 Msa0608200:CDS 60.0%
CACGACACGTGTCCTACACC+GGG - chr4_2:55217462-55217481 Msa0608200:CDS 60.0%
GATTAGGCGTGTCCCGGTGT+AGG + chr4_2:55217477-55217496 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr4_2:55217483-55217502 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr4_2:55217493-55217512 None:intergenic 60.0%
! GAAGCTCCAGGCAGCATTGG+TGG - chr4_2:55217935-55217954 Msa0608200:CDS 60.0%
TGGCCACATCCAAGGCATGC+TGG + chr4_2:55218088-55218107 None:intergenic 60.0%
GGCAAGAGTGGCCACATCCA+AGG + chr4_2:55218096-55218115 None:intergenic 60.0%
AACCCGCTCAAGCTCCTCAG+TGG + chr4_2:55218123-55218142 None:intergenic 60.0%
GACCGAGGCTATCCATCTGC+AGG - chr4_2:55219333-55219352 Msa0608200:CDS 60.0%
CACGGACACCGGACACGACA+CGG - chr4_2:55217353-55217372 Msa0608200:CDS 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr4_2:55217479-55217498 Msa0608200:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55215649 55220393 55215649 ID=Msa0608200;Name=Msa0608200
chr4_2 mRNA 55215649 55220393 55215649 ID=Msa0608200-mRNA-1;Parent=Msa0608200;Name=Msa0608200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=267|1|1|1|1|1|3|277|858
chr4_2 exon 55215649 55218274 55215649 ID=Msa0608200-mRNA-1:exon:14008;Parent=Msa0608200-mRNA-1
chr4_2 exon 55219309 55219513 55219309 ID=Msa0608200-mRNA-1:exon:14007;Parent=Msa0608200-mRNA-1
chr4_2 exon 55220104 55220393 55220104 ID=Msa0608200-mRNA-1:exon:14006;Parent=Msa0608200-mRNA-1
chr4_2 five_prime_UTR 55220127 55220393 55220127 ID=Msa0608200-mRNA-1:five_prime_utr;Parent=Msa0608200-mRNA-1
chr4_2 CDS 55220104 55220126 55220104 ID=Msa0608200-mRNA-1:cds;Parent=Msa0608200-mRNA-1
chr4_2 CDS 55219309 55219513 55219309 ID=Msa0608200-mRNA-1:cds;Parent=Msa0608200-mRNA-1
chr4_2 CDS 55215926 55218274 55215926 ID=Msa0608200-mRNA-1:cds;Parent=Msa0608200-mRNA-1
chr4_2 three_prime_UTR 55215649 55215925 55215649 ID=Msa0608200-mRNA-1:three_prime_utr;Parent=Msa0608200-mRNA-1
Gene Sequence

>Msa0608200

ATGGCTTCAAAATCAAGTACTAGATCGAAACCATCCGACAGTTCCAACAAAGCACCACCGGCAACACCAAAAGTAAATAAAGTTAGCAAACCAGTGACCAAATCAGCATCCGAGTCGCCATCTCCGTTGCAAAATTCACGTCTTTCTGTGGAAAAATCGCCACGATCTGTGAATTCAAAGCCAGCTGTTGAGCGGAAATCAGCAAAAGCTACCGCCACCCCACCTGATAAACAAGCTCCAAGAGCTGCAAAGGGTTCAGAGTTGCAGAATCAGTTGAATGTAGCTCAAGAAGATCTAAAGAAAGCAAAGGAGCAGATCCTTCAAGCTGAGAAGGAGAAGGTAAAAGCTATTGATGAGTTGAAAGAAGCACAAAGAGTGGCCGAGGAAGCAAATGAGAAGCTCCAGGCAGCATTGGTGGCTCAAAAGCAGGCTAAAGAGGAATCCGAGATCGAAAAATTCCGAGCTGTTGAATTGGAACAGGCTGGAATTGAAACTGTGAATAAGAAGGAAGAAGAATGGCAAAAAGAGCTTGAAAGTGTGAGGAACCAGCATGCCTTGGATGTGGCCACTCTTGCCTCAACCACTGAGGAGCTTGAGCGGGTTAAACAAGAACTCACCATGATGTGTGATGCTAAGAACCAGGCATTAAATCATGCTGATGATGCAGCTAAAGTTGCCGAGGTTCATGCTGAGAAAGTAGAAATTTATGCAGCTGAATTGACACAGTTGAAGGCCTTGCTAGATTCAACACAAGAAACAAAAGCCAGTGATAATAACCTTATATTGAAGTTGAAAGCAGAGATAGAAGCTCTCAAGAAAGAACTCGACAAGGGAATGAGTTATGATGAGAGGTTGACAGAGAAAGAAACTAAGATTGAACAGCTTAATGTAGAACTTGAAACCTCAAGGACGGCTGAATCTTATGCAAACAGTCTGCTTGAGGAGTGGAAAAAGAAAGTTAAGGAACTAGAAATGAGGGTTGAAGAATCAAACAAGTTGGAGAGATCTGCATCAGAATCCTTGGAATCTGTAATGAAGCAGCTAGAAGAAAGCAATGATCTGTTGCATGACGCAGAATCTGTAGCTGCTACTCTTAAAGAGAAGGTGGGATTGTTAGAAATGACAATTGTGAGACAAAAAGCCGATCTTGAGGATTCAGAACGCCGTCTTCTTATGGCTAAGGAAGAAAATCTTGAAAAGTCAAAGAAGATTGAGGCTCTTGAATCCGAACTTGAGGCAGTTAAGGAAGAGAAAGATCAGGCTTTGAACAATGAGCAGCTTGCAGCCTCTCATGTGCAGACCCTATTAGAAGAGAAAAACAAACTCATCAATGAATTGGAGAATTCTAGGGAAGAAGAAGAAAAAAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCTGCAGAATCTAGAGAAGCCAAAGAGAATTTTCTAAGCAACCAAGCTGAAAGGGAAAGCTATGAGAACCAGATTGAAGATTTGAAGTTAGTCTTAAAAGGTACTAATGAAAAATATGAGTCAATGCTTGATGAAGCGCGGCATGAAATTGATGTTCTCATATACAGTATTGAAAATTCTAAGAATGTGTTTGAGAACTCGAAGGCTGAGTGGGATCAGAGAGAGCTTGATCTAGTCAGCAGCCTAAAGAAAACTGAAGAAGAGAATGCGGCCGCGGAAAAAGAAATAAATAGATTGGTTTATTTGCTTAAACAAACTGAGGAAGAATCAAATGCCAATAGGGACGAAGAAGCTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGACCGAGGCTATCCATCTGCAGGAAGCTCTAAAGGAAGTAACGTCTGAGAACGTGAAACTGAAGGAGAATATATTGGACAAAGAGAATGAAATGCAGAATCTTTTTCAAGAAAACGATGAACTCCGAGCTAGGGAAGCCGAATCTATTAAGAAGGTGGAGGAGTTGTCAAAGTTACTGGATGAAGCTACAACCAGAAATCACACTGAGCATGAAAATGGTGATCTTTCGGACAGCGAAAAGGACTACGATTTGCTTCCTAAAGTCGTTGAATTTTCTGAAGAGAATGGTCATGGATATGGAGGAGAGGAAATTCCAAAGGTTGTTGAGCTTTCCCTCAATCAGGAAGAACTCAAACATAGCTTACTAGAAGAAAGTATGATCTTGAATGACAACGCTGATGAGAAAATCGAATCTCCTAAACCTGTGAAAATGAATGGAAAACCAAAGGAAGATGAGAGCAAAGAAAGGGATGATCCAGAAGAAGTAGAATTCAAAATGTGGGAGAGTTGCACGATTGAGAAAAAGGAGTTCTCTTTCTCACCAGAGAGAGAACTTCCAGAGGCTAAATCATTGGAAGAGGAAACTGAGTCAAAGACAGAAGAAGGTGGTGATGGTGAGAGCTTTGATAAGATAAATGGAACCACTGTTATAGAGAACATTGATAATGGTGGAAGCTCACCAGTAAAAGAAGAACAACAACAACAGTTGAAGAAGAAGAAGAAAGCTTTGCTTGGAAAATTTGGAAGCTTGCTCAAGAAGAAAGGTGGTAGCAACCAGAAATAG
Protein sequence

>Msa0608200

MASKSSTRSKPSDSSNKAPPATPKVNKVSKPVTKSASESPSPLQNSRLSVEKSPRSVNSKPAVERKSAKATATPPDKQAPRAAKGSELQNQLNVAQEDLKKAKEQILQAEKEKVKAIDELKEAQRVAEEANEKLQAALVAQKQAKEESEIEKFRAVELEQAGIETVNKKEEEWQKELESVRNQHALDVATLASTTEELERVKQELTMMCDAKNQALNHADDAAKVAEVHAEKVEIYAAELTQLKALLDSTQETKASDNNLILKLKAEIEALKKELDKGMSYDERLTEKETKIEQLNVELETSRTAESYANSLLEEWKKKVKELEMRVEESNKLERSASESLESVMKQLEESNDLLHDAESVAATLKEKVGLLEMTIVRQKADLEDSERRLLMAKEENLEKSKKIEALESELEAVKEEKDQALNNEQLAASHVQTLLEEKNKLINELENSREEEEKSKKAMESLASALHEVSAESREAKENFLSNQAERESYENQIEDLKLVLKGTNEKYESMLDEARHEIDVLIYSIENSKNVFENSKAEWDQRELDLVSSLKKTEEENAAAEKEINRLVYLLKQTEEESNANRDEEAQLKENLKEVETEAIHLQEALKEVTSENVKLKENILDKENEMQNLFQENDELRAREAESIKKVEELSKLLDEATTRNHTEHENGDLSDSEKDYDLLPKVVEFSEENGHGYGGEEIPKVVELSLNQEELKHSLLEESMILNDNADEKIESPKPVKMNGKPKEDESKERDDPEEVEFKMWESCTIEKKEFSFSPERELPEAKSLEEETESKTEEGGDGESFDKINGTTVIENIDNGGSSPVKEEQQQQLKKKKKALLGKFGSLLKKKGGSNQK*