AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691050 MtrunA17_Chr4g0039981 97.436 858 22 0 1 858 1 858 0.0 1632
Msa0691050 MtrunA17_Chr5g0395261 65.498 884 250 14 2 856 26 883 0.0 986
Msa0691050 MtrunA17_Chr3g0123761 30.682 352 217 5 312 663 83 407 8.19e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691050 AT5G16730.1 52.558 860 357 19 20 858 24 853 0.0 635
Msa0691050 AT3G02930.2 51.285 856 361 14 6 858 2 804 0.0 596
Msa0691050 AT3G02930.1 51.336 861 361 15 1 858 1 806 0.0 595
Msa0691050 AT3G02930.3 51.336 861 361 15 1 858 1 806 0.0 595
Msa0691050 AT1G65010.1 53.120 625 290 2 33 656 30 652 6.11e-175 541
Msa0691050 AT4G27595.1 49.073 701 329 9 1 690 1 684 6.52e-170 525
Msa0691050 AT4G27595.2 49.275 690 328 8 6 690 3 675 8.99e-169 521
Msa0691050 AT4G40020.1 30.469 256 167 2 404 659 123 367 1.20e-13 75.5
Msa0691050 AT2G37080.1 32.461 191 97 7 17 206 17 176 1.13e-12 72.0
Msa0691050 AT2G37080.2 32.461 191 97 7 17 206 17 176 1.13e-12 72.0
Msa0691050 AT2G37080.3 31.579 190 98 6 17 206 17 174 1.65e-12 71.6

Find 177 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGTTGTTTCTATTTC+TGG 0.107855 4_4:+58987270 None:intergenic
AAATTTGATATTTAAATATT+AGG 0.111752 4_4:+58986984 None:intergenic
AAAGCTTTGCTTGGAAAATT+TGG 0.148163 4_4:-58987323 Msa0691050:CDS
TTCATGCTCAGTGTGATTTC+TGG 0.166546 4_4:+58987853 None:intergenic
TGAAATTGGTTTGAAATTAT+TGG 0.215276 4_4:+58991628 None:intergenic
CTGCTTTCAACTTCAATATA+AGG 0.227623 4_4:+58989061 None:intergenic
TCAGAAAATTCAACGACTTT+AGG 0.228754 4_4:+58987788 None:intergenic
AATTTGATATTTAAATATTA+GGG 0.236212 4_4:+58986985 None:intergenic
GATTTGAAGTTAGTCTTAAA+AGG 0.240438 4_4:-58988349 Msa0691050:CDS
TTGCTAACTTTACTTACTTT+TGG 0.242464 4_4:+58990805 None:intergenic
TCAATGAATTGGAGAATTCT+AGG 0.267794 4_4:-58988510 Msa0691050:CDS
GAGAAACACAACAACAATTT+AGG 0.280321 4_4:+58991570 None:intergenic
GAGAGCTTTGATAAGATAAA+TGG 0.293654 4_4:-58987428 Msa0691050:CDS
CTGAAAGCCCTCATTTGAAT+TGG 0.300931 4_4:+58987009 None:intergenic
GAGTTGCACGATTGAGAAAA+AGG 0.311057 4_4:-58987540 Msa0691050:CDS
CCTTCTCCTTCTCAGCTTGA+AGG 0.311769 4_4:+58989520 None:intergenic
ATGGGCTTGTAATATTGTTT+AGG 0.313252 4_4:-58987148 Msa0691050:three_prime_UTR
TTCAGAACGCCGTCTTCTTA+TGG 0.322768 4_4:-58988683 Msa0691050:CDS
TCTTTGCTCTCATCTTCCTT+TGG 0.336435 4_4:+58987602 None:intergenic
GAAGAGAATGGTCATGGATA+TGG 0.341434 4_4:-58987767 Msa0691050:CDS
GTAGTAAGTTAGAAGAATAA+AGG 0.345041 4_4:+58991599 None:intergenic
TACTTGTTACTTTGCTTCCA+TGG 0.346474 4_4:-58991480 Msa0691050:exon
GTTGCTTAGAAAATTCTCTT+TGG 0.347577 4_4:+58988408 None:intergenic
TCTGAACCCTTTGCAGCTCT+TGG 0.352340 4_4:+58989600 None:intergenic
GAAAGATAATGTGGCCTGTC+TGG 0.352818 4_4:-58991716 Msa0691050:five_prime_UTR
AAACAAACTCATCAATGAAT+TGG 0.355092 4_4:-58988521 Msa0691050:CDS
AATCACACTGAGCATGAAAA+TGG 0.356757 4_4:-58987848 Msa0691050:CDS
CTGAGCTTCTTCGTCCCTAT+TGG 0.359876 4_4:+58988093 None:intergenic
GGAGGAGTTGTCAAAGTTAC+TGG 0.363861 4_4:-58987888 Msa0691050:CDS
AAAATTCCGAGCTGTTGAAT+TGG 0.372773 4_4:-58989385 Msa0691050:CDS
TGGCGACTCAGATGCTGATT+TGG 0.373526 4_4:+58990774 None:intergenic
CTCCACCTTCTTAATAGATT+CGG 0.374470 4_4:+58987907 None:intergenic
TTGCTACCAACATGATGATA+TGG 0.381455 4_4:+58987099 None:intergenic
AGGGAAAGCTCAACAACCTT+TGG 0.390841 4_4:+58987731 None:intergenic
TTCCTTAACTGCCTCAAGTT+CGG 0.393340 4_4:+58988612 None:intergenic
TTTGAGTTCTTCCTGATTGA+GGG 0.393979 4_4:+58987712 None:intergenic
TTTGAGCCACCAATGCTGCC+TGG 0.397662 4_4:+58989436 None:intergenic
CAATATAAGGTTATTATCAC+TGG 0.402454 4_4:+58989074 None:intergenic
AGGAAGAATCAAATGCCAAT+AGG 0.404807 4_4:-58988108 Msa0691050:CDS
GAAACTGAAGGAGAATATAT+TGG 0.409904 4_4:-58987990 Msa0691050:CDS
TGTTGCCGGTGGTGCTTTGT+TGG 0.413551 4_4:+58990828 None:intergenic
GCTGATTTCCGCTCAACAGC+TGG 0.414676 4_4:+58990691 None:intergenic
GCATGAAAATGGTGATCTTT+CGG 0.415307 4_4:-58987837 Msa0691050:CDS
GCCTCTGGAAGTTCTCTCTC+TGG 0.419412 4_4:+58987503 None:intergenic
ATCCGAACTTGAGGCAGTTA+AGG 0.419625 4_4:-58988614 Msa0691050:CDS
TGGTGCTTTGTTGGAATTGT+CGG 0.419748 4_4:+58990837 None:intergenic
TCTTCCAATGATTTAGCCTC+TGG 0.426077 4_4:+58987488 None:intergenic
CTAACTTCAAATCTTCAATC+TGG 0.431089 4_4:+58988359 None:intergenic
CCGAGCTGTTGAATTGGAAC+AGG 0.431367 4_4:-58989379 Msa0691050:CDS
CATAGCTTTCCCTTTCAGCT+TGG 0.431387 4_4:+58988386 None:intergenic
TGTTGAGCTTTCCCTCAATC+AGG 0.432554 4_4:-58987723 Msa0691050:CDS
CCATCTGCAGGAAGCTCTAA+AGG 0.434538 4_4:-58988032 Msa0691050:CDS
TCAGATGCTGATTTGGTCAC+TGG 0.435750 4_4:+58990781 None:intergenic
GTTATAGAGAACATTGATAA+TGG 0.439389 4_4:-58987398 Msa0691050:CDS
GAGCTTCTCATTTGCTTCCT+CGG 0.442024 4_4:+58989458 None:intergenic
TGAAAGCCCTCATTTGAATT+GGG 0.443283 4_4:+58987010 None:intergenic
GTTTGAGTTCTTCCTGATTG+AGG 0.445779 4_4:+58987711 None:intergenic
CCTAAACCTGTGAAAATGAA+TGG 0.446361 4_4:-58987629 Msa0691050:CDS
TTCATGTGGTTGTTCCAGAC+AGG 0.448414 4_4:+58991702 None:intergenic
ACTTCCAGAGGCTAAATCAT+TGG 0.450557 4_4:-58987492 Msa0691050:CDS
TGACATAAACAAGGAACAAA+TGG 0.457908 4_4:+58987034 None:intergenic
GAGATCTGCATCAGAATCCT+TGG 0.462775 4_4:-58988836 Msa0691050:CDS
CTCAAGCTCCTCAGTGGTTG+AGG 0.472269 4_4:+58989263 None:intergenic
TCTAAGCAACCAAGCTGAAA+GGG 0.473285 4_4:-58988395 Msa0691050:CDS
GGAAGCTTGCTCAAGAAGAA+AGG 0.475338 4_4:-58987302 Msa0691050:CDS
AGCTGAATTGACACAGTTGA+AGG 0.478624 4_4:-58989127 Msa0691050:CDS
CCTTTAGAGCTTCCTGCAGA+TGG 0.481010 4_4:+58988032 None:intergenic
GGCTCAAAAGCAGGCTAAAG+AGG 0.482156 4_4:-58989421 Msa0691050:CDS
AAGAAGAAGAAAGCTTTGCT+TGG 0.483792 4_4:-58987332 Msa0691050:CDS
TGGCTTCAAAATCAAGTACT+AGG 0.484924 4_4:-58991460 Msa0691050:intron
AGGAAGATGAGAGCAAAGAA+AGG 0.487813 4_4:-58987598 Msa0691050:CDS
GGAAGAATCAAATGCCAATA+GGG 0.488686 4_4:-58988107 Msa0691050:CDS
CATCAGCATGATTTAATGCC+TGG 0.490454 4_4:+58989199 None:intergenic
ATCAATGTTCTCTATAACAG+TGG 0.492151 4_4:+58987403 None:intergenic
AGCATTGGTGGCTCAAAAGC+AGG 0.492354 4_4:-58989430 Msa0691050:CDS
AAAACGATGAACTCCGAGCT+AGG 0.492776 4_4:-58987934 Msa0691050:CDS
CTGCTTCATTACAGATTCCA+AGG 0.493723 4_4:+58988819 None:intergenic
TTGAAATTATTGGAAGGAGA+AGG 0.495882 4_4:+58991638 None:intergenic
AGAAGCACAAAGAGTGGCCG+AGG 0.498602 4_4:-58989475 Msa0691050:CDS
GAAGCTCCAGGCAGCATTGG+TGG 0.499796 4_4:-58989442 Msa0691050:CDS
ACAAGCTCCAAGAGCTGCAA+AGG 0.501010 4_4:-58989607 Msa0691050:CDS
AGTTAAGGAACTAGAAATGA+GGG 0.504114 4_4:-58988881 Msa0691050:CDS
TTCTAAGCAACCAAGCTGAA+AGG 0.505989 4_4:-58988396 Msa0691050:CDS
ATGTCATCCCAATTCAAATG+AGG 0.512668 4_4:-58987017 Msa0691050:three_prime_UTR
TGAGAAGCTCCAGGCAGCAT+TGG 0.514376 4_4:-58989445 Msa0691050:CDS
CTATTATTGCTTACATCAGG+TGG 0.516293 4_4:+58990652 None:intergenic
GAGAATGGTCATGGATATGG+AGG 0.517496 4_4:-58987764 Msa0691050:CDS
GCAAAATTCACGTCTTTCTG+TGG 0.518226 4_4:-58990743 Msa0691050:CDS
TAGATTCGGCTTCCCTAGCT+CGG 0.520735 4_4:+58987921 None:intergenic
TGAAGAAGAGAATGCGGCCG+CGG 0.524949 4_4:-58988173 Msa0691050:CDS
TTCTTGTGTTGAATCTAGCA+AGG 0.527152 4_4:+58989104 None:intergenic
TGTCATCCCAATTCAAATGA+GGG 0.527827 4_4:-58987016 Msa0691050:three_prime_UTR
GGTTGAAGAATCAAACAAGT+TGG 0.530427 4_4:-58988860 Msa0691050:CDS
GACCGAGGCTATCCATCTGC+AGG 0.531409 4_4:-58988044 Msa0691050:CDS
GCAGATCCTTCAAGCTGAGA+AGG 0.531854 4_4:-58989526 Msa0691050:CDS
CAATTCCAACAAAGCACCAC+CGG 0.535286 4_4:-58990833 Msa0691050:CDS
GGAAGCAAATGAGAAGCTCC+AGG 0.537000 4_4:-58989454 Msa0691050:CDS
AACCACTGAGGAGCTTGAGC+GGG 0.538320 4_4:-58989259 Msa0691050:CDS
AAGTTAAGGAACTAGAAATG+AGG 0.538694 4_4:-58988882 Msa0691050:CDS
CTCAGTGGTTGAGGCAAGAG+TGG 0.539143 4_4:+58989272 None:intergenic
GGACGAAGAAGCTCAGTTGA+AGG 0.541111 4_4:-58988086 Msa0691050:CDS
TGAATAAGAAGGAAGAAGAA+TGG 0.541280 4_4:-58989341 Msa0691050:CDS
AGAGGCTAAATCATTGGAAG+AGG 0.542206 4_4:-58987486 Msa0691050:CDS
AGTTAAGGAAGAGAAAGATC+AGG 0.542809 4_4:-58988599 Msa0691050:CDS
TGCTACTCTTAAAGAGAAGG+TGG 0.543694 4_4:-58988752 Msa0691050:CDS
TGATCTTTCGGACAGCGAAA+AGG 0.544136 4_4:-58987825 Msa0691050:CDS
ACGCCGTCTTCTTATGGCTA+AGG 0.545598 4_4:-58988677 Msa0691050:CDS
GCTGTTGAATTGGAACAGGC+TGG 0.548085 4_4:-58989375 Msa0691050:CDS
TGGCCACATCCAAGGCATGC+TGG 0.548388 4_4:+58989292 None:intergenic
GGCTTTGAATTCACAGATCG+TGG 0.550956 4_4:+58990712 None:intergenic
ATTGGTTTGAAATTATTGGA+AGG 0.551236 4_4:+58991632 None:intergenic
TGTGAGGAACCAGCATGCCT+TGG 0.551371 4_4:-58989301 Msa0691050:CDS
CAATGAATTGGAGAATTCTA+GGG 0.553198 4_4:-58988509 Msa0691050:CDS
TATTATTGCTTACATCAGGT+GGG 0.554905 4_4:+58990653 None:intergenic
GGTTCTCCATATCATCATGT+TGG 0.555729 4_4:-58987105 Msa0691050:three_prime_UTR
AATTGAAACTGTGAATAAGA+AGG 0.556477 4_4:-58989352 Msa0691050:CDS
GGAAGATGAGAGCAAAGAAA+GGG 0.556487 4_4:-58987597 Msa0691050:CDS
CAACCACTGAGGAGCTTGAG+CGG 0.561441 4_4:-58989260 Msa0691050:CDS
CTTCCTTAGCCATAAGAAGA+CGG 0.564152 4_4:+58988674 None:intergenic
ACTGAGTCAAAGACAGAAGA+AGG 0.566826 4_4:-58987461 Msa0691050:CDS
TACTTTCTCAGCATGAACCT+CGG 0.567598 4_4:+58989161 None:intergenic
TGAAAAGTCAAAGAAGATTG+AGG 0.568592 4_4:-58988644 Msa0691050:CDS
TGGTCATGGATATGGAGGAG+AGG 0.569474 4_4:-58987759 Msa0691050:CDS
GGAAGCCGAATCTATTAAGA+AGG 0.570744 4_4:-58987912 Msa0691050:CDS
GGCAAGAGTGGCCACATCCA+AGG 0.575724 4_4:+58989284 None:intergenic
AAGAAGTAGAATTCAAAATG+TGG 0.576268 4_4:-58987565 Msa0691050:CDS
AAACGATGAACTCCGAGCTA+GGG 0.576737 4_4:-58987933 Msa0691050:CDS
AGAAGTAGAATTCAAAATGT+GGG 0.576995 4_4:-58987564 Msa0691050:CDS
TGAGAACTCGAAGGCTGAGT+GGG 0.577593 4_4:-58988236 Msa0691050:CDS
GTTCTTAGCATCACACATCA+TGG 0.582449 4_4:+58989221 None:intergenic
AGCTGCTACTCTTAAAGAGA+AGG 0.582698 4_4:-58988755 Msa0691050:CDS
CATAAACAAGGAACAAATGG+TGG 0.583214 4_4:+58987037 None:intergenic
ATTATTGCTTACATCAGGTG+GGG 0.583904 4_4:+58990654 None:intergenic
ATAGAGAACATTGATAATGG+TGG 0.585848 4_4:-58987395 Msa0691050:CDS
GCTTTGTTGGAATTGTCGGA+TGG 0.586226 4_4:+58990841 None:intergenic
AACGGTTAAGAAAGATAATG+TGG 0.587116 4_4:-58991725 Msa0691050:five_prime_UTR
TTATGCAAACAGTCTGCTTG+AGG 0.587993 4_4:-58988917 Msa0691050:CDS
ATGTAGAACTTGAAACCTCA+AGG 0.589981 4_4:-58988951 Msa0691050:CDS
GAACCAGCATGCCTTGGATG+TGG 0.590468 4_4:-58989295 Msa0691050:CDS
AAGACAGAAGAAGGTGGTGA+TGG 0.591342 4_4:-58987452 Msa0691050:CDS
AGGGAATGAGTTATGATGAG+AGG 0.592178 4_4:-58989008 Msa0691050:CDS
GCGTTCTGAATCCTCAAGAT+CGG 0.596202 4_4:+58988696 None:intergenic
GGCTCTTGAATCCGAACTTG+AGG 0.596607 4_4:-58988623 Msa0691050:CDS
CGAATCTATTAAGAAGGTGG+AGG 0.596983 4_4:-58987906 Msa0691050:CDS
TCAGTTGAAGGAAAATCTGA+AGG 0.598448 4_4:-58988074 Msa0691050:CDS
CAAGCTCCAAGAGCTGCAAA+GGG 0.600838 4_4:-58989606 Msa0691050:CDS
CAAACAGTCTGCTTGAGGAG+TGG 0.607787 4_4:-58988912 Msa0691050:CDS
CCTGTTCCAATTCAACAGCT+CGG 0.607837 4_4:+58989379 None:intergenic
GTCTGAGAACGTGAAACTGA+AGG 0.607986 4_4:-58988002 Msa0691050:CDS
CCTTCAAGCTGAGAAGGAGA+AGG 0.610724 4_4:-58989520 Msa0691050:CDS
AGCCGAATCTATTAAGAAGG+TGG 0.611971 4_4:-58987909 Msa0691050:CDS
ATTGCTTACATCAGGTGGGG+TGG 0.612190 4_4:+58990657 None:intergenic
GAAAATGAATGGAAAACCAA+AGG 0.613917 4_4:-58987618 Msa0691050:CDS
GAATGTGTTTGAGAACTCGA+AGG 0.623748 4_4:-58988245 Msa0691050:CDS
TAATAGGGTCTGCACATGAG+AGG 0.625836 4_4:+58988552 None:intergenic
AACCCGCTCAAGCTCCTCAG+TGG 0.633744 4_4:+58989257 None:intergenic
CTCAAGAAAGAACTCGACAA+GGG 0.633999 4_4:-58989027 Msa0691050:CDS
TCTCAAGAAAGAACTCGACA+AGG 0.634380 4_4:-58989028 Msa0691050:CDS
TTCCTGCAGATGGATAGCCT+CGG 0.644406 4_4:+58988042 None:intergenic
ATAAGATTCAGCCGTCCTTG+AGG 0.647778 4_4:+58988936 None:intergenic
TTATTTGCTTAAACAAACTG+AGG 0.648313 4_4:-58988128 Msa0691050:CDS
TTGAGAACTCGAAGGCTGAG+TGG 0.651278 4_4:-58988237 Msa0691050:CDS
GTTGAAAGAAGCACAAAGAG+TGG 0.652851 4_4:-58989481 Msa0691050:CDS
TGGAGGAGAGGAAATTCCAA+AGG 0.653330 4_4:-58987747 Msa0691050:CDS
GAATTGGGATGACATAAACA+AGG 0.659304 4_4:+58987025 None:intergenic
ATTCAAAGCCAGCTGTTGAG+CGG 0.660562 4_4:-58990699 Msa0691050:CDS
GCTACTCTTAAAGAGAAGGT+GGG 0.661481 4_4:-58988751 Msa0691050:CDS
AGCTTGCTCAAGAAGAAAGG+TGG 0.662119 4_4:-58987299 Msa0691050:CDS
GAAAACTGAAGAAGAGAATG+CGG 0.663328 4_4:-58988179 Msa0691050:CDS
AGTCAATGCTTGATGAAGCG+CGG 0.666394 4_4:-58988309 Msa0691050:CDS
TGATGCAGCTAAAGTTGCCG+AGG 0.669959 4_4:-58989178 Msa0691050:CDS
AGAACTTGAAACCTCAAGGA+CGG 0.671436 4_4:-58988947 Msa0691050:CDS
TCTGAAGGAAGTTGAGACCG+AGG 0.687621 4_4:-58988059 Msa0691050:CDS
CACTCTTGCCTCAACCACTG+AGG 0.695834 4_4:-58989271 Msa0691050:CDS
ACCAGAGAGAGAACTTCCAG+AGG 0.698874 4_4:-58987504 Msa0691050:CDS
GATGTGTGATGCTAAGAACC+AGG 0.701568 4_4:-58989217 Msa0691050:CDS
GAGTCAAAGACAGAAGAAGG+TGG 0.711580 4_4:-58987458 Msa0691050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTAAAACAAAAAAAAA+TGG + chr4_4:58987438-58987457 None:intergenic 10.0%
!!! AATATAGATTTTATAAGAAA+TGG - chr4_4:58991619-58991638 Msa0691050:five_prime_UTR 10.0%
!!! ATATAGATTTTATAAGAAAT+GGG - chr4_4:58991620-58991639 Msa0691050:five_prime_UTR 10.0%
!!! TTTTTTGTTTTACTTTTTGT+CGG - chr4_4:58987441-58987460 Msa0691050:CDS 15.0%
!! AAAAATAGTAATTGAAATGA+AGG + chr4_4:58988240-58988259 None:intergenic 15.0%
!!! TTCATTTCAATTACTATTTT+TGG - chr4_4:58988239-58988258 Msa0691050:CDS 15.0%
!!! TCATTTCAATTACTATTTTT+GGG - chr4_4:58988240-58988259 Msa0691050:CDS 15.0%
!!! TAATAATTTGACATTTTTGT+GGG - chr4_4:58988361-58988380 Msa0691050:CDS 15.0%
!!! AATATTGTTTAGGATTTTTT+TGG - chr4_4:58991648-58991667 Msa0691050:five_prime_UTR 15.0%
!!! TGAAATTGGTTTGAAATTAT+TGG + chr4_4:58987161-58987180 None:intergenic 20.0%
!!! AATAAAGGTTTTTGTGAAAT+TGG + chr4_4:58987175-58987194 None:intergenic 20.0%
!!! TTTTTTTGTTGAACTATGAA+TGG + chr4_4:58987269-58987288 None:intergenic 20.0%
!! TCTATGTACAATTCAAAAAT+TGG - chr4_4:58987614-58987633 Msa0691050:CDS 20.0%
!! CTATGTACAATTCAAAAATT+GGG - chr4_4:58987615-58987634 Msa0691050:CDS 20.0%
!! CAACAATGTATTGTAAAATA+AGG + chr4_4:58987713-58987732 None:intergenic 20.0%
!!! AAATAAGAATTGTTTTCTTG+TGG - chr4_4:58987797-58987816 Msa0691050:CDS 20.0%
!!! CTAATAATTTGACATTTTTG+TGG - chr4_4:58988360-58988379 Msa0691050:CDS 20.0%
!!! AATAATTTGACATTTTTGTG+GGG - chr4_4:58988362-58988381 Msa0691050:CDS 20.0%
!! ATTCTGTAATGTCTATTATT+TGG - chr4_4:58988424-58988443 Msa0691050:CDS 20.0%
!! GTAAAATACTGTTAAACATA+AGG + chr4_4:58988484-58988503 None:intergenic 20.0%
!! ATTATTGATATTATGAAGCA+CGG - chr4_4:58988732-58988751 Msa0691050:CDS 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG + chr4_4:58990252-58990271 None:intergenic 20.0%
!! GGAAAAAGAAATAAATAGAT+TGG - chr4_4:58990634-58990653 Msa0691050:intron 20.0%
!!! ATTGGTTTGAAATTATTGGA+AGG + chr4_4:58987157-58987176 None:intergenic 25.0%
! GTAGTAAGTTAGAAGAATAA+AGG + chr4_4:58987190-58987209 None:intergenic 25.0%
! TATACTGTTAAGATCTGAAT+TGG - chr4_4:58987385-58987404 Msa0691050:CDS 25.0%
! ATACTGTTAAGATCTGAATT+GGG - chr4_4:58987386-58987405 Msa0691050:CDS 25.0%
!!! TGTAATTTGTTTTTTGCTTG+AGG - chr4_4:58987464-58987483 Msa0691050:CDS 25.0%
! CTAGTAATTATGATATGCTA+TGG - chr4_4:58987496-58987515 Msa0691050:CDS 25.0%
!! ATGTTCATCTGTTGAAATTT+TGG - chr4_4:58987569-58987588 Msa0691050:CDS 25.0%
!! TGATTTTGTACAATTAAGCT+TGG - chr4_4:58987683-58987702 Msa0691050:CDS 25.0%
! TCAATTTCCAATCAAATAGA+TGG + chr4_4:58987830-58987849 None:intergenic 25.0%
!!! TTGTGTTTTGTTATCTTGAA+TGG - chr4_4:58987859-58987878 Msa0691050:CDS 25.0%
!! TTGCTAACTTTACTTACTTT+TGG + chr4_4:58987984-58988003 None:intergenic 25.0%
! AATCTATTATTGCTTACATC+AGG + chr4_4:58988140-58988159 None:intergenic 25.0%
! AATAGACATTACAGAATGAA+AGG + chr4_4:58988421-58988440 None:intergenic 25.0%
! TGTAATGTCTATTATTTGGT+TGG - chr4_4:58988428-58988447 Msa0691050:CDS 25.0%
! TAAGTAAAAACAAGTGACAT+GGG + chr4_4:58988961-58988980 None:intergenic 25.0%
! TTAAGTAAAAACAAGTGACA+TGG + chr4_4:58988962-58988981 None:intergenic 25.0%
! TGTACTTATTATGTATTGCT+TGG - chr4_4:58989144-58989163 Msa0691050:CDS 25.0%
! AATTGAAACTGTGAATAAGA+AGG - chr4_4:58989434-58989453 Msa0691050:CDS 25.0%
! CAATATAAGGTTATTATCAC+TGG + chr4_4:58989715-58989734 None:intergenic 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG + chr4_4:58990253-58990272 None:intergenic 25.0%
! AAACAAACTCATCAATGAAT+TGG - chr4_4:58990265-58990284 Msa0691050:intron 25.0%
! AGAAGAAGAAAAAAGCAAAA+AGG - chr4_4:58990301-58990320 Msa0691050:intron 25.0%
!!! GATTTGAAGTTAGTCTTAAA+AGG - chr4_4:58990437-58990456 Msa0691050:intron 25.0%
!!! TCTATTTATTTCTTTTTCCG+CGG + chr4_4:58990633-58990652 None:intergenic 25.0%
! TTATTTGCTTAAACAAACTG+AGG - chr4_4:58990658-58990677 Msa0691050:intron 25.0%
!! ATTTTGAATTCTACTTCTTC+TGG + chr4_4:58991220-58991239 None:intergenic 25.0%
! AAGAAGTAGAATTCAAAATG+TGG - chr4_4:58991221-58991240 Msa0691050:intron 25.0%
! AGAAGTAGAATTCAAAATGT+GGG - chr4_4:58991222-58991241 Msa0691050:intron 25.0%
! GTTATAGAGAACATTGATAA+TGG - chr4_4:58991388-58991407 Msa0691050:intron 25.0%
!!! TTGAATGTTGTTTCTATTTC+TGG + chr4_4:58991519-58991538 None:intergenic 25.0%
ATGTGAGAGAGAAAAAAGAA+CGG - chr4_4:58987043-58987062 Msa0691050:three_prime_UTR 30.0%
AACGGTTAAGAAAGATAATG+TGG - chr4_4:58987061-58987080 Msa0691050:three_prime_UTR 30.0%
!!! AAATTGAGTTGGTTTTCATG+TGG + chr4_4:58987101-58987120 None:intergenic 30.0%
CAGAAACTGAAAAATTGAGT+TGG + chr4_4:58987112-58987131 None:intergenic 30.0%
TTGAAATTATTGGAAGGAGA+AGG + chr4_4:58987151-58987170 None:intergenic 30.0%
GAGAAACACAACAACAATTT+AGG + chr4_4:58987219-58987238 None:intergenic 30.0%
!!! AATTTGTTTTTTGCTTGAGG+AGG - chr4_4:58987467-58987486 Msa0691050:CDS 30.0%
AATTAAGCATCCAGAATCAT+TGG + chr4_4:58987775-58987794 None:intergenic 30.0%
CTTAGATCCATCTATTTGAT+TGG - chr4_4:58987820-58987839 Msa0691050:CDS 30.0%
!!! GAATGGTGTGTTACTTTTAA+TGG - chr4_4:58987876-58987895 Msa0691050:CDS 30.0%
TATTATTGCTTACATCAGGT+GGG + chr4_4:58988136-58988155 None:intergenic 30.0%
TGTCTATTATTTGGTTGGAT+TGG - chr4_4:58988433-58988452 Msa0691050:CDS 30.0%
!! TATTATTTGGTTGGATTGGT+TGG - chr4_4:58988437-58988456 Msa0691050:CDS 30.0%
AATACTGTTAAACATAAGGC+AGG + chr4_4:58988480-58988499 None:intergenic 30.0%
CACTAGATATTTGAATCAAC+TGG + chr4_4:58988548-58988567 None:intergenic 30.0%
AATTGACAGCAAAAAAGAAG+TGG + chr4_4:58988659-58988678 None:intergenic 30.0%
GATTCAAGTCATAAACCAAA+TGG + chr4_4:58988708-58988727 None:intergenic 30.0%
TTTCCAATTATTAGCTGTGT+CGG + chr4_4:58988799-58988818 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr4_4:58988830-58988849 Msa0691050:CDS 30.0%
TCATCTACTAATATGAAGCA+CGG + chr4_4:58988919-58988938 None:intergenic 30.0%
AGTAAAATTCGACTCTTGAT+TGG - chr4_4:58989022-58989041 Msa0691050:CDS 30.0%
GTAAAATTCGACTCTTGATT+GGG - chr4_4:58989023-58989042 Msa0691050:CDS 30.0%
! TTATCATGCTCTCTTTTGAA+AGG - chr4_4:58989106-58989125 Msa0691050:CDS 30.0%
TGAATAAGAAGGAAGAAGAA+TGG - chr4_4:58989445-58989464 Msa0691050:CDS 30.0%
CTGCTTTCAACTTCAATATA+AGG + chr4_4:58989728-58989747 None:intergenic 30.0%
AAGTTAAGGAACTAGAAATG+AGG - chr4_4:58989904-58989923 Msa0691050:intron 30.0%
AGTTAAGGAACTAGAAATGA+GGG - chr4_4:58989905-58989924 Msa0691050:intron 30.0%
TGAAAAGTCAAAGAAGATTG+AGG - chr4_4:58990142-58990161 Msa0691050:intron 30.0%
TCAATGAATTGGAGAATTCT+AGG - chr4_4:58990276-58990295 Msa0691050:intron 30.0%
CAATGAATTGGAGAATTCTA+GGG - chr4_4:58990277-58990296 Msa0691050:intron 30.0%
AGAAAAAAGCAAAAAGGCAA+TGG - chr4_4:58990307-58990326 Msa0691050:intron 30.0%
GTTGCTTAGAAAATTCTCTT+TGG + chr4_4:58990381-58990400 None:intergenic 30.0%
CTAACTTCAAATCTTCAATC+TGG + chr4_4:58990430-58990449 None:intergenic 30.0%
! TCTCTTCTTCAGTTTTCTTT+AGG + chr4_4:58990604-58990623 None:intergenic 30.0%
GAAACTGAAGGAGAATATAT+TGG - chr4_4:58990796-58990815 Msa0691050:CDS 30.0%
TCAGAAAATTCAACGACTTT+AGG + chr4_4:58991001-58991020 None:intergenic 30.0%
!! GTTGAATTTTCTGAAGAGAA+TGG - chr4_4:58991007-58991026 Msa0691050:intron 30.0%
GAAAATGAATGGAAAACCAA+AGG - chr4_4:58991168-58991187 Msa0691050:intron 30.0%
! GAGAGCTTTGATAAGATAAA+TGG - chr4_4:58991358-58991377 Msa0691050:intron 30.0%
ATCAATGTTCTCTATAACAG+TGG + chr4_4:58991386-58991405 None:intergenic 30.0%
!! ATAGAGAACATTGATAATGG+TGG - chr4_4:58991391-58991410 Msa0691050:intron 30.0%
!! TGTTGTTGTTCTTCTTTTAC+TGG + chr4_4:58991424-58991443 None:intergenic 30.0%
AAAGCTTTGCTTGGAAAATT+TGG - chr4_4:58991463-58991482 Msa0691050:CDS 30.0%
ATGGGCTTGTAATATTGTTT+AGG - chr4_4:58991638-58991657 Msa0691050:five_prime_UTR 30.0%
!!! GTTTAGGATTTTTTTGGCTT+TGG - chr4_4:58991654-58991673 Msa0691050:five_prime_UTR 30.0%
! AATGGTGGAAAAAGAATAGT+TGG + chr4_4:58991737-58991756 None:intergenic 30.0%
TGACATAAACAAGGAACAAA+TGG + chr4_4:58991755-58991774 None:intergenic 30.0%
!! TACTTGTTACTTTGCTTCCA+TGG - chr4_4:58987306-58987325 Msa0691050:CDS 35.0%
!!! AGTACTTGATTTTGAAGCCA+TGG + chr4_4:58987326-58987345 None:intergenic 35.0%
TGGCTTCAAAATCAAGTACT+AGG - chr4_4:58987326-58987345 Msa0691050:CDS 35.0%
! AGTACTAGGTTAGTCAAGTT+TGG - chr4_4:58987340-58987359 Msa0691050:CDS 35.0%
!!! TTACTTACTTTTGGTGTTGC+CGG + chr4_4:58987975-58987994 None:intergenic 35.0%
! GAAAGACGTGAATTTTGCAA+CGG + chr4_4:58988041-58988060 None:intergenic 35.0%
ATTATTGCTTACATCAGGTG+GGG + chr4_4:58988135-58988154 None:intergenic 35.0%
CTATTATTGCTTACATCAGG+TGG + chr4_4:58988137-58988156 None:intergenic 35.0%
TTCAGTAGACTTGAGATGTT+AGG + chr4_4:58988283-58988302 None:intergenic 35.0%
! GTCTACTGAAAAGTGTGATA+AGG - chr4_4:58988293-58988312 Msa0691050:CDS 35.0%
TATCGAATCGAGATATGACT+CGG + chr4_4:58988514-58988533 None:intergenic 35.0%
GATATTATGAAGCACGGATA+CGG - chr4_4:58988738-58988757 Msa0691050:CDS 35.0%
AAAATTCCGAGCTGTTGAAT+TGG - chr4_4:58989401-58989420 Msa0691050:CDS 35.0%
! AAAAAGAGCTTGAAAGTGTG+AGG - chr4_4:58989469-58989488 Msa0691050:CDS 35.0%
TTCTTGTGTTGAATCTAGCA+AGG + chr4_4:58989685-58989704 None:intergenic 35.0%
ATGTAGAACTTGAAACCTCA+AGG - chr4_4:58989835-58989854 Msa0691050:intron 35.0%
GGAGTGGAAAAAGAAAGTTA+AGG - chr4_4:58989890-58989909 Msa0691050:intron 35.0%
GGTTGAAGAATCAAACAAGT+TGG - chr4_4:58989926-58989945 Msa0691050:intron 35.0%
AGTTAAGGAAGAGAAAGATC+AGG - chr4_4:58990187-58990206 Msa0691050:intron 35.0%
GAAAACTGAAGAAGAGAATG+CGG - chr4_4:58990607-58990626 Msa0691050:intron 35.0%
AGGAAGAATCAAATGCCAAT+AGG - chr4_4:58990678-58990697 Msa0691050:CDS 35.0%
GGAAGAATCAAATGCCAATA+GGG - chr4_4:58990679-58990698 Msa0691050:CDS 35.0%
TCAGTTGAAGGAAAATCTGA+AGG - chr4_4:58990712-58990731 Msa0691050:CDS 35.0%
CTCCACCTTCTTAATAGATT+CGG + chr4_4:58990882-58990901 None:intergenic 35.0%
AATCACACTGAGCATGAAAA+TGG - chr4_4:58990938-58990957 Msa0691050:intron 35.0%
GCATGAAAATGGTGATCTTT+CGG - chr4_4:58990949-58990968 Msa0691050:intron 35.0%
!! TTTTCTGAAGAGAATGGTCA+TGG - chr4_4:58991013-58991032 Msa0691050:intron 35.0%
! TTTGAGTTCTTCCTGATTGA+GGG + chr4_4:58991077-58991096 None:intergenic 35.0%
! CCATTCATTTTCACAGGTTT+AGG + chr4_4:58991160-58991179 None:intergenic 35.0%
CCTAAACCTGTGAAAATGAA+TGG - chr4_4:58991157-58991176 Msa0691050:intron 35.0%
! GGTTTTCCATTCATTTTCAC+AGG + chr4_4:58991166-58991185 None:intergenic 35.0%
AAGAAGAAGAAAGCTTTGCT+TGG - chr4_4:58991454-58991473 Msa0691050:intron 35.0%
!!! GATTTTTTTGGCTTTGGTTG+TGG - chr4_4:58991660-58991679 Msa0691050:five_prime_UTR 35.0%
TTGCTACCAACATGATGATA+TGG + chr4_4:58991690-58991709 None:intergenic 35.0%
CATAAACAAGGAACAAATGG+TGG + chr4_4:58991752-58991771 None:intergenic 35.0%
GAATTGGGATGACATAAACA+AGG + chr4_4:58991764-58991783 None:intergenic 35.0%
ATGTCATCCCAATTCAAATG+AGG - chr4_4:58991769-58991788 Msa0691050:five_prime_UTR 35.0%
TGTCATCCCAATTCAAATGA+GGG - chr4_4:58991770-58991789 Msa0691050:five_prime_UTR 35.0%
TGAAAGCCCTCATTTGAATT+GGG + chr4_4:58991779-58991798 None:intergenic 35.0%
!! GCTGTTGTTTCCAATGATTC+TGG - chr4_4:58987762-58987781 Msa0691050:CDS 40.0%
! TGGTGCTTTGTTGGAATTGT+CGG + chr4_4:58987952-58987971 None:intergenic 40.0%
GCAAAATTCACGTCTTTCTG+TGG - chr4_4:58988043-58988062 Msa0691050:CDS 40.0%
TTGAACTCGAGATGAGATTC+AGG + chr4_4:58988586-58988605 None:intergenic 40.0%
GAACCATTCTAACGAATCTC+TGG - chr4_4:58988614-58988633 Msa0691050:CDS 40.0%
TAGCCAGAGATTCGTTAGAA+TGG + chr4_4:58988620-58988639 None:intergenic 40.0%
GACAGCAAAAAAGAAGTGGT+TGG + chr4_4:58988655-58988674 None:intergenic 40.0%
! GACACTTCTCTTTTGCCATT+TGG - chr4_4:58988690-58988709 Msa0691050:CDS 40.0%
! GTTGAAAGAAGCACAAAGAG+TGG - chr4_4:58989305-58989324 Msa0691050:CDS 40.0%
!! AGCTCGGAATTTTTCGATCT+CGG + chr4_4:58989394-58989413 None:intergenic 40.0%
GTTCTTAGCATCACACATCA+TGG + chr4_4:58989568-58989587 None:intergenic 40.0%
CATCAGCATGATTTAATGCC+TGG + chr4_4:58989590-58989609 None:intergenic 40.0%
TACTTTCTCAGCATGAACCT+CGG + chr4_4:58989628-58989647 None:intergenic 40.0%
AGCTGAATTGACACAGTTGA+AGG - chr4_4:58989659-58989678 Msa0691050:intron 40.0%
TCTCAAGAAAGAACTCGACA+AGG - chr4_4:58989758-58989777 Msa0691050:intron 40.0%
CTCAAGAAAGAACTCGACAA+GGG - chr4_4:58989759-58989778 Msa0691050:intron 40.0%
AGGGAATGAGTTATGATGAG+AGG - chr4_4:58989778-58989797 Msa0691050:intron 40.0%
AGAACTTGAAACCTCAAGGA+CGG - chr4_4:58989839-58989858 Msa0691050:intron 40.0%
TTATGCAAACAGTCTGCTTG+AGG - chr4_4:58989869-58989888 Msa0691050:intron 40.0%
CTGCTTCATTACAGATTCCA+AGG + chr4_4:58989970-58989989 None:intergenic 40.0%
AGCTGCTACTCTTAAAGAGA+AGG - chr4_4:58990031-58990050 Msa0691050:intron 40.0%
TGCTACTCTTAAAGAGAAGG+TGG - chr4_4:58990034-58990053 Msa0691050:intron 40.0%
GCTACTCTTAAAGAGAAGGT+GGG - chr4_4:58990035-58990054 Msa0691050:intron 40.0%
CTTCCTTAGCCATAAGAAGA+CGG + chr4_4:58990115-58990134 None:intergenic 40.0%
TTCCTTAACTGCCTCAAGTT+CGG + chr4_4:58990177-58990196 None:intergenic 40.0%
TTCTAAGCAACCAAGCTGAA+AGG - chr4_4:58990390-58990409 Msa0691050:intron 40.0%
TCTAAGCAACCAAGCTGAAA+GGG - chr4_4:58990391-58990410 Msa0691050:intron 40.0%
GAATGTGTTTGAGAACTCGA+AGG - chr4_4:58990541-58990560 Msa0691050:intron 40.0%
GGAAGCCGAATCTATTAAGA+AGG - chr4_4:58990874-58990893 Msa0691050:intron 40.0%
AGCCGAATCTATTAAGAAGG+TGG - chr4_4:58990877-58990896 Msa0691050:intron 40.0%
CGAATCTATTAAGAAGGTGG+AGG - chr4_4:58990880-58990899 Msa0691050:intron 40.0%
TTCATGCTCAGTGTGATTTC+TGG + chr4_4:58990936-58990955 None:intergenic 40.0%
GAAGAGAATGGTCATGGATA+TGG - chr4_4:58991019-58991038 Msa0691050:intron 40.0%
! GTTTGAGTTCTTCCTGATTG+AGG + chr4_4:58991078-58991097 None:intergenic 40.0%
TCTTTGCTCTCATCTTCCTT+TGG + chr4_4:58991187-58991206 None:intergenic 40.0%
AGGAAGATGAGAGCAAAGAA+AGG - chr4_4:58991188-58991207 Msa0691050:intron 40.0%
GGAAGATGAGAGCAAAGAAA+GGG - chr4_4:58991189-58991208 Msa0691050:intron 40.0%
GAGTTGCACGATTGAGAAAA+AGG - chr4_4:58991246-58991265 Msa0691050:intron 40.0%
ACTTCCAGAGGCTAAATCAT+TGG - chr4_4:58991294-58991313 Msa0691050:intron 40.0%
TCTTCCAATGATTTAGCCTC+TGG + chr4_4:58991301-58991320 None:intergenic 40.0%
AGAGGCTAAATCATTGGAAG+AGG - chr4_4:58991300-58991319 Msa0691050:intron 40.0%
ACTGAGTCAAAGACAGAAGA+AGG - chr4_4:58991325-58991344 Msa0691050:intron 40.0%
GGTTCTCCATATCATCATGT+TGG - chr4_4:58991681-58991700 Msa0691050:five_prime_UTR 40.0%
CTGAAAGCCCTCATTTGAAT+TGG + chr4_4:58991780-58991799 None:intergenic 40.0%
GAAAGATAATGTGGCCTGTC+TGG - chr4_4:58987070-58987089 Msa0691050:three_prime_UTR 45.0%
TTCATGTGGTTGTTCCAGAC+AGG + chr4_4:58987087-58987106 None:intergenic 45.0%
! GCTTTGTTGGAATTGTCGGA+TGG + chr4_4:58987948-58987967 None:intergenic 45.0%
! CAATTCCAACAAAGCACCAC+CGG - chr4_4:58987953-58987972 Msa0691050:CDS 45.0%
!! TCAGATGCTGATTTGGTCAC+TGG + chr4_4:58988008-58988027 None:intergenic 45.0%
! CGTGAATTTTGCAACGGAGA+TGG + chr4_4:58988035-58988054 None:intergenic 45.0%
!! GGCTTTGAATTCACAGATCG+TGG + chr4_4:58988077-58988096 None:intergenic 45.0%
ATTCAAAGCCAGCTGTTGAG+CGG - chr4_4:58988087-58988106 Msa0691050:CDS 45.0%
! GGAAACATCTGAGATGTGCA+AGG - chr4_4:58988314-58988333 Msa0691050:CDS 45.0%
TAAGGCAGGAACATCTTCAG+CGG + chr4_4:58988466-58988485 None:intergenic 45.0%
ACGCCGACACAGCTAATAAT+TGG - chr4_4:58988793-58988812 Msa0691050:CDS 45.0%
GAGCTTCTCATTTGCTTCCT+CGG + chr4_4:58989331-58989350 None:intergenic 45.0%
CCTGTTCCAATTCAACAGCT+CGG + chr4_4:58989410-58989429 None:intergenic 45.0%
GATGTGTGATGCTAAGAACC+AGG - chr4_4:58989569-58989588 Msa0691050:CDS 45.0%
ATAAGATTCAGCCGTCCTTG+AGG + chr4_4:58989853-58989872 None:intergenic 45.0%
GAGATCTGCATCAGAATCCT+TGG - chr4_4:58989950-58989969 Msa0691050:intron 45.0%
GAGACAAAAAGCCGATCTTG+AGG - chr4_4:58990079-58990098 Msa0691050:intron 45.0%
! GCGTTCTGAATCCTCAAGAT+CGG + chr4_4:58990093-58990112 None:intergenic 45.0%
TTCAGAACGCCGTCTTCTTA+TGG - chr4_4:58990103-58990122 Msa0691050:intron 45.0%
ATCCGAACTTGAGGCAGTTA+AGG - chr4_4:58990172-58990191 Msa0691050:intron 45.0%
TAATAGGGTCTGCACATGAG+AGG + chr4_4:58990237-58990256 None:intergenic 45.0%
CATAGCTTTCCCTTTCAGCT+TGG + chr4_4:58990403-58990422 None:intergenic 45.0%
AGTCAATGCTTGATGAAGCG+CGG - chr4_4:58990477-58990496 Msa0691050:intron 45.0%
GTCTGAGAACGTGAAACTGA+AGG - chr4_4:58990784-58990803 Msa0691050:CDS 45.0%
AAAACGATGAACTCCGAGCT+AGG - chr4_4:58990852-58990871 Msa0691050:intron 45.0%
AAACGATGAACTCCGAGCTA+GGG - chr4_4:58990853-58990872 Msa0691050:intron 45.0%
GGAGGAGTTGTCAAAGTTAC+TGG - chr4_4:58990898-58990917 Msa0691050:intron 45.0%
TGATCTTTCGGACAGCGAAA+AGG - chr4_4:58990961-58990980 Msa0691050:intron 45.0%
GAGAATGGTCATGGATATGG+AGG - chr4_4:58991022-58991041 Msa0691050:intron 45.0%
TGGAGGAGAGGAAATTCCAA+AGG - chr4_4:58991039-58991058 Msa0691050:intron 45.0%
AGGGAAAGCTCAACAACCTT+TGG + chr4_4:58991058-58991077 None:intergenic 45.0%
TGTTGAGCTTTCCCTCAATC+AGG - chr4_4:58991063-58991082 Msa0691050:intron 45.0%
GAGTCAAAGACAGAAGAAGG+TGG - chr4_4:58991328-58991347 Msa0691050:intron 45.0%
AAGACAGAAGAAGGTGGTGA+TGG - chr4_4:58991334-58991353 Msa0691050:intron 45.0%
! GGAAGCTTGCTCAAGAAGAA+AGG - chr4_4:58991484-58991503 Msa0691050:five_prime_UTR 45.0%
! AGCTTGCTCAAGAAGAAAGG+TGG - chr4_4:58991487-58991506 Msa0691050:five_prime_UTR 45.0%
!! AATTTGATATTTAAATATTA+GGG + chr4_4:58991804-58991823 None:intergenic 5.0%
!! AAATTTGATATTTAAATATT+AGG + chr4_4:58991805-58991824 None:intergenic 5.0%
!!! CTTACTTTTGGTGTTGCCGG+TGG + chr4_4:58987972-58987991 None:intergenic 50.0%
! TGGCGACTCAGATGCTGATT+TGG + chr4_4:58988015-58988034 None:intergenic 50.0%
ATTGCTTACATCAGGTGGGG+TGG + chr4_4:58988132-58988151 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr4_4:58988744-58988763 Msa0691050:CDS 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG - chr4_4:58988841-58988860 Msa0691050:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + chr4_4:58988908-58988927 None:intergenic 50.0%
CGACTCTTGATTGGGAAAGC+AGG - chr4_4:58989031-58989050 Msa0691050:CDS 50.0%
ACAAGCTCCAAGAGCTGCAA+AGG - chr4_4:58989179-58989198 Msa0691050:CDS 50.0%
CAAGCTCCAAGAGCTGCAAA+GGG - chr4_4:58989180-58989199 Msa0691050:CDS 50.0%
TCTGAACCCTTTGCAGCTCT+TGG + chr4_4:58989189-58989208 None:intergenic 50.0%
GCAGATCCTTCAAGCTGAGA+AGG - chr4_4:58989260-58989279 Msa0691050:CDS 50.0%
CCTTCTCCTTCTCAGCTTGA+AGG + chr4_4:58989269-58989288 None:intergenic 50.0%
CCTTCAAGCTGAGAAGGAGA+AGG - chr4_4:58989266-58989285 Msa0691050:CDS 50.0%
GGAAGCAAATGAGAAGCTCC+AGG - chr4_4:58989332-58989351 Msa0691050:CDS 50.0%
!! AGCATTGGTGGCTCAAAAGC+AGG - chr4_4:58989356-58989375 Msa0691050:CDS 50.0%
GGCTCAAAAGCAGGCTAAAG+AGG - chr4_4:58989365-58989384 Msa0691050:CDS 50.0%
CCGAGCTGTTGAATTGGAAC+AGG - chr4_4:58989407-58989426 Msa0691050:CDS 50.0%
GCTGTTGAATTGGAACAGGC+TGG - chr4_4:58989411-58989430 Msa0691050:CDS 50.0%
TGATGCAGCTAAAGTTGCCG+AGG - chr4_4:58989608-58989627 Msa0691050:CDS 50.0%
CAAACAGTCTGCTTGAGGAG+TGG - chr4_4:58989874-58989893 Msa0691050:intron 50.0%
ACGCCGTCTTCTTATGGCTA+AGG - chr4_4:58990109-58990128 Msa0691050:intron 50.0%
GGCTCTTGAATCCGAACTTG+AGG - chr4_4:58990163-58990182 Msa0691050:intron 50.0%
TTGAGAACTCGAAGGCTGAG+TGG - chr4_4:58990549-58990568 Msa0691050:intron 50.0%
TGAGAACTCGAAGGCTGAGT+GGG - chr4_4:58990550-58990569 Msa0691050:intron 50.0%
CTGAGCTTCTTCGTCCCTAT+TGG + chr4_4:58990696-58990715 None:intergenic 50.0%
GGACGAAGAAGCTCAGTTGA+AGG - chr4_4:58990700-58990719 Msa0691050:CDS 50.0%
TCTGAAGGAAGTTGAGACCG+AGG - chr4_4:58990727-58990746 Msa0691050:CDS 50.0%
TTCCTGCAGATGGATAGCCT+CGG + chr4_4:58990747-58990766 None:intergenic 50.0%
!! CCTTTAGAGCTTCCTGCAGA+TGG + chr4_4:58990757-58990776 None:intergenic 50.0%
! CCATCTGCAGGAAGCTCTAA+AGG - chr4_4:58990754-58990773 Msa0691050:CDS 50.0%
TAGATTCGGCTTCCCTAGCT+CGG + chr4_4:58990868-58990887 None:intergenic 50.0%
TGGTCATGGATATGGAGGAG+AGG - chr4_4:58991027-58991046 Msa0691050:intron 50.0%
ACCAGAGAGAGAACTTCCAG+AGG - chr4_4:58991282-58991301 Msa0691050:intron 50.0%
TGTTGCCGGTGGTGCTTTGT+TGG + chr4_4:58987961-58987980 None:intergenic 55.0%
! GCTGATTTCCGCTCAACAGC+TGG + chr4_4:58988098-58988117 None:intergenic 55.0%
! AGAAGCACAAAGAGTGGCCG+AGG - chr4_4:58989311-58989330 Msa0691050:CDS 55.0%
TGAGAAGCTCCAGGCAGCAT+TGG - chr4_4:58989341-58989360 Msa0691050:CDS 55.0%
TTTGAGCCACCAATGCTGCC+TGG + chr4_4:58989353-58989372 None:intergenic 55.0%
TGTGAGGAACCAGCATGCCT+TGG - chr4_4:58989485-58989504 Msa0691050:CDS 55.0%
GAACCAGCATGCCTTGGATG+TGG - chr4_4:58989491-58989510 Msa0691050:CDS 55.0%
CTCAGTGGTTGAGGCAAGAG+TGG + chr4_4:58989517-58989536 None:intergenic 55.0%
CACTCTTGCCTCAACCACTG+AGG - chr4_4:58989515-58989534 Msa0691050:CDS 55.0%
CTCAAGCTCCTCAGTGGTTG+AGG + chr4_4:58989526-58989545 None:intergenic 55.0%
CAACCACTGAGGAGCTTGAG+CGG - chr4_4:58989526-58989545 Msa0691050:CDS 55.0%
AACCACTGAGGAGCTTGAGC+GGG - chr4_4:58989527-58989546 Msa0691050:CDS 55.0%
TGAAGAAGAGAATGCGGCCG+CGG - chr4_4:58990613-58990632 Msa0691050:intron 55.0%
! GCCTCTGGAAGTTCTCTCTC+TGG + chr4_4:58991286-58991305 None:intergenic 55.0%
ACGGATACGGACACGGACAC+CGG - chr4_4:58988751-58988770 Msa0691050:CDS 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr4_4:58988773-58988792 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr4_4:58988847-58988866 Msa0691050:CDS 60.0%
ACACGACACGTGTCCGACAC+CGG - chr4_4:58988870-58988889 Msa0691050:CDS 60.0%
GATTAGGCGTGTCCCGGTGT+CGG + chr4_4:58988886-58988905 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr4_4:58988892-58988911 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr4_4:58988902-58988921 None:intergenic 60.0%
! GAAGCTCCAGGCAGCATTGG+TGG - chr4_4:58989344-58989363 Msa0691050:CDS 60.0%
TGGCCACATCCAAGGCATGC+TGG + chr4_4:58989497-58989516 None:intergenic 60.0%
GGCAAGAGTGGCCACATCCA+AGG + chr4_4:58989505-58989524 None:intergenic 60.0%
AACCCGCTCAAGCTCCTCAG+TGG + chr4_4:58989532-58989551 None:intergenic 60.0%
GACCGAGGCTATCCATCTGC+AGG - chr4_4:58990742-58990761 Msa0691050:CDS 60.0%
CACGGACACCGGACACGACA+CGG - chr4_4:58988762-58988781 Msa0691050:CDS 65.0%
CACGACACGTGTCCGACACC+GGG - chr4_4:58988871-58988890 Msa0691050:CDS 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr4_4:58988888-58988907 Msa0691050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 58986981 58991827 58986981 ID=Msa0691050;Name=Msa0691050
chr4_4 mRNA 58986981 58991827 58986981 ID=Msa0691050-mRNA-1;Parent=Msa0691050;Name=Msa0691050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=344|1|1|1|1|1|3|302|858
chr4_4 exon 58986981 58989631 58986981 ID=Msa0691050-mRNA-1:exon:15970;Parent=Msa0691050-mRNA-1
chr4_4 exon 58990666 58990870 58990666 ID=Msa0691050-mRNA-1:exon:15969;Parent=Msa0691050-mRNA-1
chr4_4 exon 58991461 58991827 58991461 ID=Msa0691050-mRNA-1:exon:15968;Parent=Msa0691050-mRNA-1
chr4_4 five_prime_UTR 58991484 58991827 58991484 ID=Msa0691050-mRNA-1:five_prime_utr;Parent=Msa0691050-mRNA-1
chr4_4 CDS 58991461 58991483 58991461 ID=Msa0691050-mRNA-1:cds;Parent=Msa0691050-mRNA-1
chr4_4 CDS 58990666 58990870 58990666 ID=Msa0691050-mRNA-1:cds;Parent=Msa0691050-mRNA-1
chr4_4 CDS 58987283 58989631 58987283 ID=Msa0691050-mRNA-1:cds;Parent=Msa0691050-mRNA-1
chr4_4 three_prime_UTR 58986981 58987282 58986981 ID=Msa0691050-mRNA-1:three_prime_utr;Parent=Msa0691050-mRNA-1
Gene Sequence

>Msa0691050

ATGGCTTCAAAATCAAGTACTAGATCGAAACCATCCGACAATTCCAACAAAGCACCACCGGCAACACCAAAAGTAAGTAAAGTTAGCAAACCAGTGACCAAATCAGCATCTGAGTCGCCATCTCCGTTGCAAAATTCACGTCTTTCTGTGGAAAAATCGCCACGATCTGTGAATTCAAAGCCAGCTGTTGAGCGGAAATCAGCAAAAGCTACTGCCACCCCACCTGATAAACAAGCTCCAAGAGCTGCAAAGGGTTCAGAGTTGCAGAATCAGTTGAATGTAGCTCAAGAAGATCTAAAGAAAGCAAAAGAGCAGATCCTTCAAGCTGAGAAGGAGAAGGTAAAAGCTATTGATGAGTTGAAAGAAGCACAAAGAGTGGCCGAGGAAGCAAATGAGAAGCTCCAGGCAGCATTGGTGGCTCAAAAGCAGGCTAAAGAGGAATCCGAGATCGAAAAATTCCGAGCTGTTGAATTGGAACAGGCTGGAATTGAAACTGTGAATAAGAAGGAAGAAGAATGGCAAAAAGAGCTTGAAAGTGTGAGGAACCAGCATGCCTTGGATGTGGCCACTCTTGCCTCAACCACTGAGGAGCTTGAGCGGGTTAAACAAGAACTCACCATGATGTGTGATGCTAAGAACCAGGCATTAAATCATGCTGATGATGCAGCTAAAGTTGCCGAGGTTCATGCTGAGAAAGTAGAAATTTATGCAGCTGAATTGACACAGTTGAAGGCCTTGCTAGATTCAACACAAGAAACAAAAGCCAGTGATAATAACCTTATATTGAAGTTGAAAGCAGAGATAGAAGCTCTCAAGAAAGAACTCGACAAGGGAATGAGTTATGATGAGAGGTTGACAGAGAAAGAAACTAAGATTGAACAGCTTAATGTAGAACTTGAAACCTCAAGGACGGCTGAATCTTATGCAAACAGTCTGCTTGAGGAGTGGAAAAAGAAAGTTAAGGAACTAGAAATGAGGGTTGAAGAATCAAACAAGTTGGAGAGATCTGCATCAGAATCCTTGGAATCTGTAATGAAGCAGCTAGAAGAAAGCAATGATCTGTTGCATGACGCAGAATCTGTAGCTGCTACTCTTAAAGAGAAGGTGGGATTGTTAGAAATGACAATTGTGAGACAAAAAGCCGATCTTGAGGATTCAGAACGCCGTCTTCTTATGGCTAAGGAAGAAAATCTTGAAAAGTCAAAGAAGATTGAGGCTCTTGAATCCGAACTTGAGGCAGTTAAGGAAGAGAAAGATCAGGCTTTGAACAATGAGCAGCTTGCAGCCTCTCATGTGCAGACCCTATTAGAAGAGAAAAACAAACTCATCAATGAATTGGAGAATTCTAGGGAAGAAGAAGAAAAAAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCTGCAGAATCTAGAGAAGCCAAAGAGAATTTTCTAAGCAACCAAGCTGAAAGGGAAAGCTATGAGAACCAGATTGAAGATTTGAAGTTAGTCTTAAAAGGTACTAATGAAAAATATGAGTCAATGCTTGATGAAGCGCGGCATGAAATTGATGTTCTCATATACAGTATTGAAAATTCTAAGAATGTGTTTGAGAACTCGAAGGCTGAGTGGGATCAGAGAGAGCTTGATCTAGTCAGCAGCCTAAAGAAAACTGAAGAAGAGAATGCGGCCGCGGAAAAAGAAATAAATAGATTGGTTTATTTGCTTAAACAAACTGAGGAAGAATCAAATGCCAATAGGGACGAAGAAGCTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGACCGAGGCTATCCATCTGCAGGAAGCTCTAAAGGAAGTAACGTCTGAGAACGTGAAACTGAAGGAGAATATATTGGACAAAGAGAATGAAATGCAGAATCTTTTTCAAGAAAACGATGAACTCCGAGCTAGGGAAGCCGAATCTATTAAGAAGGTGGAGGAGTTGTCAAAGTTACTGGATGAAGCTACAACCAGAAATCACACTGAGCATGAAAATGGTGATCTTTCGGACAGCGAAAAGGACTACGATTTGCTTCCTAAAGTCGTTGAATTTTCTGAAGAGAATGGTCATGGATATGGAGGAGAGGAAATTCCAAAGGTTGTTGAGCTTTCCCTCAATCAGGAAGAACTCAAACATAGCTTACTAGAAGAAAGTATGATCTTGAATGACAACGCTGATGAGAAAATCGAATCTCCTAAACCTGTGAAAATGAATGGAAAACCAAAGGAAGATGAGAGCAAAGAAAGGGATGATCCAGAAGAAGTAGAATTCAAAATGTGGGAGAGTTGCACGATTGAGAAAAAGGAGTTCTCTTTCTCACCAGAGAGAGAACTTCCAGAGGCTAAATCATTGGAAGAGGAAACTGAGTCAAAGACAGAAGAAGGTGGTGATGGTGAGAGCTTTGATAAGATAAATGGAACCACTGTTATAGAGAACATTGATAATGGTGGAAGCTCACCAGTAAAAGAAGAACAACAACAACAGTTGAAGAAGAAGAAGAAAGCTTTGCTTGGAAAATTTGGAAGCTTGCTCAAGAAGAAAGGTGGTAGCAACCAGAAATAG

Protein sequence

>Msa0691050

MASKSSTRSKPSDNSNKAPPATPKVSKVSKPVTKSASESPSPLQNSRLSVEKSPRSVNSKPAVERKSAKATATPPDKQAPRAAKGSELQNQLNVAQEDLKKAKEQILQAEKEKVKAIDELKEAQRVAEEANEKLQAALVAQKQAKEESEIEKFRAVELEQAGIETVNKKEEEWQKELESVRNQHALDVATLASTTEELERVKQELTMMCDAKNQALNHADDAAKVAEVHAEKVEIYAAELTQLKALLDSTQETKASDNNLILKLKAEIEALKKELDKGMSYDERLTEKETKIEQLNVELETSRTAESYANSLLEEWKKKVKELEMRVEESNKLERSASESLESVMKQLEESNDLLHDAESVAATLKEKVGLLEMTIVRQKADLEDSERRLLMAKEENLEKSKKIEALESELEAVKEEKDQALNNEQLAASHVQTLLEEKNKLINELENSREEEEKSKKAMESLASALHEVSAESREAKENFLSNQAERESYENQIEDLKLVLKGTNEKYESMLDEARHEIDVLIYSIENSKNVFENSKAEWDQRELDLVSSLKKTEEENAAAEKEINRLVYLLKQTEEESNANRDEEAQLKENLKEVETEAIHLQEALKEVTSENVKLKENILDKENEMQNLFQENDELRAREAESIKKVEELSKLLDEATTRNHTEHENGDLSDSEKDYDLLPKVVEFSEENGHGYGGEEIPKVVELSLNQEELKHSLLEESMILNDNADEKIESPKPVKMNGKPKEDESKERDDPEEVEFKMWESCTIEKKEFSFSPERELPEAKSLEEETESKTEEGGDGESFDKINGTTVIENIDNGGSSPVKEEQQQQLKKKKKALLGKFGSLLKKKGGSNQK*