AlfalfaGEDB | Msa0691050

M. sativa cultivar zhongmu-4 / Msa0691050

KEGG: -
GO: GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005856 GO:0005875 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0099086 GO:0140013 GO:1901360 GO:1903046
PFAM: PF05701.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691050	XP_013456645.1	97.436	858	22	0	1	858	1	858	0.0	1632

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691050	sp\|Q9LFE4\|Y5673_ARATH	52.558	860	357	19	20	858	24	853	0.0	635

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691050	A0A072UMR5	97.436	858	22	0	1	858	1	858	0.0	1632

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0691050	-0.830546	2.762826e-55	-8.615850e-47
Msa0003300	Msa0691050	0.813783	2.149098e-51	-8.615850e-47
Msa0006110	Msa0691050	0.802255	6.118146e-49	-8.615850e-47
Msa0007660	Msa0691050	0.805741	1.152885e-49	-8.615850e-47
Msa0008290	Msa0691050	0.824766	6.756560e-54	-8.615850e-47
Msa0014570	Msa0691050	0.849841	2.495332e-60	-8.615850e-47
Msa0014710	Msa0691050	0.821663	3.581990e-53	-8.615850e-47
Msa0022310	Msa0691050	0.877086	8.332673e-69	-8.615850e-47
Msa0022550	Msa0691050	0.810832	9.475378e-51	-8.615850e-47
Msa0022750	Msa0691050	-0.830502	2.832298e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691050	MtrunA17_Chr4g0039981	97.436	858	22	0	1	858	1	858	0.0	1632
Msa0691050	MtrunA17_Chr5g0395261	65.498	884	250	14	2	856	26	883	0.0	986
Msa0691050	MtrunA17_Chr3g0123761	30.682	352	217	5	312	663	83	407	8.19e-23	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691050	AT5G16730.1	52.558	860	357	19	20	858	24	853	0.0	635
Msa0691050	AT3G02930.2	51.285	856	361	14	6	858	2	804	0.0	596
Msa0691050	AT3G02930.1	51.336	861	361	15	1	858	1	806	0.0	595
Msa0691050	AT3G02930.3	51.336	861	361	15	1	858	1	806	0.0	595
Msa0691050	AT1G65010.1	53.120	625	290	2	33	656	30	652	6.11e-175	541
Msa0691050	AT4G27595.1	49.073	701	329	9	1	690	1	684	6.52e-170	525
Msa0691050	AT4G27595.2	49.275	690	328	8	6	690	3	675	8.99e-169	521
Msa0691050	AT4G40020.1	30.469	256	167	2	404	659	123	367	1.20e-13	75.5
Msa0691050	AT2G37080.1	32.461	191	97	7	17	206	17	176	1.13e-12	72.0
Msa0691050	AT2G37080.2	32.461	191	97	7	17	206	17	176	1.13e-12	72.0

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Find 177 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATGAACTCCGAGCT+AGG	0.492776	4_4:-58987934	Msa0691050:CDS
AAAATTCCGAGCTGTTGAAT+TGG	0.372773	4_4:-58989385	Msa0691050:CDS
AAACAAACTCATCAATGAAT+TGG	0.355092	4_4:-58988521	Msa0691050:CDS
AAACGATGAACTCCGAGCTA+GGG	0.576737	4_4:-58987933	Msa0691050:CDS
AAAGCTTTGCTTGGAAAATT+TGG	0.148163	4_4:-58987323	Msa0691050:CDS
AAATTTGATATTTAAATATT+AGG	0.111752	4_4:+58986984	None:intergenic
AACCACTGAGGAGCTTGAGC+GGG	0.538320	4_4:-58989259	Msa0691050:CDS
AACCCGCTCAAGCTCCTCAG+TGG	0.633744	4_4:+58989257	None:intergenic
AACGGTTAAGAAAGATAATG+TGG	0.587116	4_4:-58991725	Msa0691050:five_prime_UTR
AAGAAGAAGAAAGCTTTGCT+TGG	0.483792	4_4:-58987332	Msa0691050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTGAGAGAGAAAAAAGAA+CGG	-	chr4_4:58987043-58987062	Msa0691050:three_prime_UTR	30.0%
AACGGTTAAGAAAGATAATG+TGG	-	chr4_4:58987061-58987080	Msa0691050:three_prime_UTR	30.0%
CAGAAACTGAAAAATTGAGT+TGG	+	chr4_4:58987112-58987131	None:intergenic	30.0%
TTGAAATTATTGGAAGGAGA+AGG	+	chr4_4:58987151-58987170	None:intergenic	30.0%
GAGAAACACAACAACAATTT+AGG	+	chr4_4:58987219-58987238	None:intergenic	30.0%
AATTAAGCATCCAGAATCAT+TGG	+	chr4_4:58987775-58987794	None:intergenic	30.0%
CTTAGATCCATCTATTTGAT+TGG	-	chr4_4:58987820-58987839	Msa0691050:CDS	30.0%
TATTATTGCTTACATCAGGT+GGG	+	chr4_4:58988136-58988155	None:intergenic	30.0%
TGTCTATTATTTGGTTGGAT+TGG	-	chr4_4:58988433-58988452	Msa0691050:CDS	30.0%
AATACTGTTAAACATAAGGC+AGG	+	chr4_4:58988480-58988499	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	58986981	58991827	58986981	ID=Msa0691050;Name=Msa0691050
chr4_4	mRNA	58986981	58991827	58986981	ID=Msa0691050-mRNA-1;Parent=Msa0691050;Name=Msa0691050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=344\|1\|1\|1\|1\|1\|3\|302\|858
chr4_4	exon	58986981	58989631	58986981	ID=Msa0691050-mRNA-1:exon:15970;Parent=Msa0691050-mRNA-1
chr4_4	exon	58990666	58990870	58990666	ID=Msa0691050-mRNA-1:exon:15969;Parent=Msa0691050-mRNA-1
chr4_4	exon	58991461	58991827	58991461	ID=Msa0691050-mRNA-1:exon:15968;Parent=Msa0691050-mRNA-1
chr4_4	five_prime_UTR	58991484	58991827	58991484	ID=Msa0691050-mRNA-1:five_prime_utr;Parent=Msa0691050-mRNA-1
chr4_4	CDS	58991461	58991483	58991461	ID=Msa0691050-mRNA-1:cds;Parent=Msa0691050-mRNA-1
chr4_4	CDS	58990666	58990870	58990666	ID=Msa0691050-mRNA-1:cds;Parent=Msa0691050-mRNA-1
chr4_4	CDS	58987283	58989631	58987283	ID=Msa0691050-mRNA-1:cds;Parent=Msa0691050-mRNA-1
chr4_4	three_prime_UTR	58986981	58987282	58986981	ID=Msa0691050-mRNA-1:three_prime_utr;Parent=Msa0691050-mRNA-1

Gene Sequence

>Msa0691050

ATGGCTTCAAAATCAAGTACTAGATCGAAACCATCCGACAATTCCAACAAAGCACCACCGGCAACACCAAAAGTAAGTAAAGTTAGCAAACCAGTGACCAAATCAGCATCTGAGTCGCCATCTCCGTTGCAAAATTCACGTCTTTCTGTGGAAAAATCGCCACGATCTGTGAATTCAAAGCCAGCTGTTGAGCGGAAATCAGCAAAAGCTACTGCCACCCCACCTGATAAACAAGCTCCAAGAGCTGCAAAGGGTTCAGAGTTGCAGAATCAGTTGAATGTAGCTCAAGAAGATCTAAAGAAAGCAAAAGAGCAGATCCTTCAAGCTGAGAAGGAGAAGGTAAAAGCTATTGATGAGTTGAAAGAAGCACAAAGAGTGGCCGAGGAAGCAAATGAGAAGCTCCAGGCAGCATTGGTGGCTCAAAAGCAGGCTAAAGAGGAATCCGAGATCGAAAAATTCCGAGCTGTTGAATTGGAACAGGCTGGAATTGAAACTGTGAATAAGAAGGAAGAAGAATGGCAAAAAGAGCTTGAAAGTGTGAGGAACCAGCATGCCTTGGATGTGGCCACTCTTGCCTCAACCACTGAGGAGCTTGAGCGGGTTAAACAAGAACTCACCATGATGTGTGATGCTAAGAACCAGGCATTAAATCATGCTGATGATGCAGCTAAAGTTGCCGAGGTTCATGCTGAGAAAGTAGAAATTTATGCAGCTGAATTGACACAGTTGAAGGCCTTGCTAGATTCAACACAAGAAACAAAAGCCAGTGATAATAACCTTATATTGAAGTTGAAAGCAGAGATAGAAGCTCTCAAGAAAGAACTCGACAAGGGAATGAGTTATGATGAGAGGTTGACAGAGAAAGAAACTAAGATTGAACAGCTTAATGTAGAACTTGAAACCTCAAGGACGGCTGAATCTTATGCAAACAGTCTGCTTGAGGAGTGGAAAAAGAAAGTTAAGGAACTAGAAATGAGGGTTGAAGAATCAAACAAGTTGGAGAGATCTGCATCAGAATCCTTGGAATCTGTAATGAAGCAGCTAGAAGAAAGCAATGATCTGTTGCATGACGCAGAATCTGTAGCTGCTACTCTTAAAGAGAAGGTGGGATTGTTAGAAATGACAATTGTGAGACAAAAAGCCGATCTTGAGGATTCAGAACGCCGTCTTCTTATGGCTAAGGAAGAAAATCTTGAAAAGTCAAAGAAGATTGAGGCTCTTGAATCCGAACTTGAGGCAGTTAAGGAAGAGAAAGATCAGGCTTTGAACAATGAGCAGCTTGCAGCCTCTCATGTGCAGACCCTATTAGAAGAGAAAAACAAACTCATCAATGAATTGGAGAATTCTAGGGAAGAAGAAGAAAAAAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCTGCAGAATCTAGAGAAGCCAAAGAGAATTTTCTAAGCAACCAAGCTGAAAGGGAAAGCTATGAGAACCAGATTGAAGATTTGAAGTTAGTCTTAAAAGGTACTAATGAAAAATATGAGTCAATGCTTGATGAAGCGCGGCATGAAATTGATGTTCTCATATACAGTATTGAAAATTCTAAGAATGTGTTTGAGAACTCGAAGGCTGAGTGGGATCAGAGAGAGCTTGATCTAGTCAGCAGCCTAAAGAAAACTGAAGAAGAGAATGCGGCCGCGGAAAAAGAAATAAATAGATTGGTTTATTTGCTTAAACAAACTGAGGAAGAATCAAATGCCAATAGGGACGAAGAAGCTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGACCGAGGCTATCCATCTGCAGGAAGCTCTAAAGGAAGTAACGTCTGAGAACGTGAAACTGAAGGAGAATATATTGGACAAAGAGAATGAAATGCAGAATCTTTTTCAAGAAAACGATGAACTCCGAGCTAGGGAAGCCGAATCTATTAAGAAGGTGGAGGAGTTGTCAAAGTTACTGGATGAAGCTACAACCAGAAATCACACTGAGCATGAAAATGGTGATCTTTCGGACAGCGAAAAGGACTACGATTTGCTTCCTAAAGTCGTTGAATTTTCTGAAGAGAATGGTCATGGATATGGAGGAGAGGAAATTCCAAAGGTTGTTGAGCTTTCCCTCAATCAGGAAGAACTCAAACATAGCTTACTAGAAGAAAGTATGATCTTGAATGACAACGCTGATGAGAAAATCGAATCTCCTAAACCTGTGAAAATGAATGGAAAACCAAAGGAAGATGAGAGCAAAGAAAGGGATGATCCAGAAGAAGTAGAATTCAAAATGTGGGAGAGTTGCACGATTGAGAAAAAGGAGTTCTCTTTCTCACCAGAGAGAGAACTTCCAGAGGCTAAATCATTGGAAGAGGAAACTGAGTCAAAGACAGAAGAAGGTGGTGATGGTGAGAGCTTTGATAAGATAAATGGAACCACTGTTATAGAGAACATTGATAATGGTGGAAGCTCACCAGTAAAAGAAGAACAACAACAACAGTTGAAGAAGAAGAAGAAAGCTTTGCTTGGAAAATTTGGAAGCTTGCTCAAGAAGAAAGGTGGTAGCAACCAGAAATAG

Protein sequence

>Msa0691050

MASKSSTRSKPSDNSNKAPPATPKVSKVSKPVTKSASESPSPLQNSRLSVEKSPRSVNSKPAVERKSAKATATPPDKQAPRAAKGSELQNQLNVAQEDLKKAKEQILQAEKEKVKAIDELKEAQRVAEEANEKLQAALVAQKQAKEESEIEKFRAVELEQAGIETVNKKEEEWQKELESVRNQHALDVATLASTTEELERVKQELTMMCDAKNQALNHADDAAKVAEVHAEKVEIYAAELTQLKALLDSTQETKASDNNLILKLKAEIEALKKELDKGMSYDERLTEKETKIEQLNVELETSRTAESYANSLLEEWKKKVKELEMRVEESNKLERSASESLESVMKQLEESNDLLHDAESVAATLKEKVGLLEMTIVRQKADLEDSERRLLMAKEENLEKSKKIEALESELEAVKEEKDQALNNEQLAASHVQTLLEEKNKLINELENSREEEEKSKKAMESLASALHEVSAESREAKENFLSNQAERESYENQIEDLKLVLKGTNEKYESMLDEARHEIDVLIYSIENSKNVFENSKAEWDQRELDLVSSLKKTEEENAAAEKEINRLVYLLKQTEEESNANRDEEAQLKENLKEVETEAIHLQEALKEVTSENVKLKENILDKENEMQNLFQENDELRAREAESIKKVEELSKLLDEATTRNHTEHENGDLSDSEKDYDLLPKVVEFSEENGHGYGGEEIPKVVELSLNQEELKHSLLEESMILNDNADEKIESPKPVKMNGKPKEDESKERDDPEEVEFKMWESCTIEKKEFSFSPERELPEAKSLEEETESKTEEGGDGESFDKINGTTVIENIDNGGSSPVKEEQQQQLKKKKKALLGKFGSLLKKKGGSNQK*