Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050930 | XP_003589334.1 | 96.332 | 627 | 10 | 1 | 1 | 614 | 1 | 627 | 0.0 | 1251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050930 | sp|Q9SIW1|BLH7_ARATH | 59.929 | 282 | 65 | 7 | 173 | 430 | 117 | 374 | 8.78e-100 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050930 | G7I5U5 | 96.332 | 627 | 10 | 1 | 1 | 614 | 1 | 627 | 0.0 | 1251 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0050930 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003300 | Msa0050930 | 0.901616 | 2.237036e-78 | -8.615850e-47 |
| Msa0006110 | Msa0050930 | 0.829291 | 5.589525e-55 | -8.615850e-47 |
| Msa0029850 | Msa0050930 | 0.830404 | 2.993396e-55 | -8.615850e-47 |
| Msa0036140 | Msa0050930 | 0.819439 | 1.160656e-52 | -8.615850e-47 |
| Msa0036920 | Msa0050930 | 0.821085 | 4.869091e-53 | -8.615850e-47 |
| Msa0039330 | Msa0050930 | 0.802994 | 4.306473e-49 | -8.615850e-47 |
| Msa0042550 | Msa0050930 | 0.804863 | 1.761412e-49 | -8.615850e-47 |
| Msa0050930 | Msa0068740 | -0.800833 | 1.197063e-48 | -8.615850e-47 |
| Msa0050930 | Msa0077180 | 0.804083 | 2.561404e-49 | -8.615850e-47 |
| Msa0050930 | Msa0077450 | 0.828321 | 9.594357e-55 | -8.615850e-47 |
| Msa0050930 | Msa0083090 | 0.816808 | 4.568378e-52 | -8.615850e-47 |
| Msa0050930 | Msa0094600 | -0.852005 | 6.130121e-61 | -8.615850e-47 |
| Msa0050930 | Msa0095560 | 0.813486 | 2.498432e-51 | -8.615850e-47 |
| Msa0050930 | Msa0125050 | 0.801766 | 7.711100e-49 | -8.615850e-47 |
| Msa0050930 | Msa0129550 | 0.804822 | 1.796245e-49 | -8.615850e-47 |
| Msa0050930 | Msa0130970 | 0.819580 | 1.077771e-52 | -8.615850e-47 |
| Msa0050930 | Msa0144790 | 0.827602 | 1.429116e-54 | -8.615850e-47 |
| Msa0050930 | Msa0169820 | 0.829058 | 6.366262e-55 | -8.615850e-47 |
| Msa0050930 | Msa0170140 | 0.827213 | 1.771663e-54 | -8.615850e-47 |
| Msa0050930 | Msa0178510 | 0.817850 | 2.662608e-52 | -8.615850e-47 |
| Msa0050930 | Msa0183010 | -0.825579 | 4.340347e-54 | -8.615850e-47 |
| Msa0050930 | Msa0187830 | 0.807862 | 4.107511e-50 | -8.615850e-47 |
| Msa0050930 | Msa0200560 | 0.815685 | 8.145948e-52 | -8.615850e-47 |
| Msa0050930 | Msa0210450 | 0.805014 | 1.637992e-49 | -8.615850e-47 |
| Msa0050930 | Msa0212990 | 0.804962 | 1.679381e-49 | -8.615850e-47 |
| Msa0050930 | Msa0213040 | 0.812647 | 3.815820e-51 | -8.615850e-47 |
| Msa0050930 | Msa0230640 | -0.830555 | 2.749135e-55 | -8.615850e-47 |
| Msa0050930 | Msa0234440 | 0.849394 | 3.325897e-60 | -8.615850e-47 |
| Msa0050930 | Msa0236700 | -0.812223 | 4.724597e-51 | -8.615850e-47 |
| Msa0050930 | Msa0243250 | 0.849390 | 3.333969e-60 | -8.615850e-47 |
| Msa0050930 | Msa0253340 | 0.808795 | 2.598462e-50 | -8.615850e-47 |
| Msa0050930 | Msa0264780 | 0.806629 | 7.495860e-50 | -8.615850e-47 |
| Msa0050930 | Msa0272730 | 0.850955 | 1.215163e-60 | -8.615850e-47 |
| Msa0050930 | Msa0277420 | 0.840185 | 1.012487e-57 | -8.615850e-47 |
| Msa0050930 | Msa0280230 | 0.808094 | 3.666636e-50 | -8.615850e-47 |
| Msa0050930 | Msa0281640 | 0.831162 | 1.951364e-55 | -8.615850e-47 |
| Msa0050930 | Msa0292170 | 0.810146 | 1.332351e-50 | -8.615850e-47 |
| Msa0050930 | Msa0305190 | 0.806875 | 6.650106e-50 | -8.615850e-47 |
| Msa0050930 | Msa0308460 | 0.806476 | 8.076904e-50 | -8.615850e-47 |
| Msa0050930 | Msa0317270 | 0.818925 | 1.519438e-52 | -8.615850e-47 |
| Msa0050930 | Msa0320800 | 0.818695 | 1.714080e-52 | -8.615850e-47 |
| Msa0050930 | Msa0326520 | 0.806341 | 8.621049e-50 | -8.615850e-47 |
| Msa0050930 | Msa0344690 | -0.831395 | 1.710198e-55 | -8.615850e-47 |
| Msa0050930 | Msa0345970 | 0.805636 | 1.213384e-49 | -8.615850e-47 |
| Msa0050930 | Msa0350320 | -0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0050930 | Msa0350870 | 0.825162 | 5.447127e-54 | -8.615850e-47 |
| Msa0050930 | Msa0376590 | 0.829359 | 5.381464e-55 | -8.615850e-47 |
| Msa0050930 | Msa0381600 | -0.810812 | 9.569211e-51 | -8.615850e-47 |
| Msa0050930 | Msa0390960 | 0.809627 | 1.723529e-50 | -8.615850e-47 |
| Msa0050930 | Msa0393620 | 0.824356 | 8.437460e-54 | -8.615850e-47 |
| Msa0050930 | Msa0398200 | 0.827531 | 1.485922e-54 | -8.615850e-47 |
| Msa0050930 | Msa0409200 | 0.821327 | 4.282546e-53 | -8.615850e-47 |
| Msa0050930 | Msa0426900 | 0.802836 | 4.644152e-49 | -8.615850e-47 |
| Msa0050930 | Msa0429090 | 0.827765 | 1.305387e-54 | -8.615850e-47 |
| Msa0050930 | Msa0433410 | -0.824953 | 6.103341e-54 | -8.615850e-47 |
| Msa0050930 | Msa0436370 | 0.835034 | 2.122369e-56 | -8.615850e-47 |
| Msa0050930 | Msa0440750 | 0.805930 | 1.052154e-49 | -8.615850e-47 |
| Msa0050930 | Msa0443290 | 0.803719 | 3.048677e-49 | -8.615850e-47 |
| Msa0050930 | Msa0444750 | -0.868038 | 8.785739e-66 | -8.615850e-47 |
| Msa0050930 | Msa0452810 | -0.810589 | 1.069253e-50 | -8.615850e-47 |
| Msa0050930 | Msa0458440 | 0.810749 | 9.875407e-51 | -8.615850e-47 |
| Msa0050930 | Msa0469940 | -0.817959 | 2.515307e-52 | -8.615850e-47 |
| Msa0050930 | Msa0475500 | 0.824488 | 7.854207e-54 | -8.615850e-47 |
| Msa0050930 | Msa0476880 | 0.804641 | 1.959895e-49 | -8.615850e-47 |
| Msa0050930 | Msa0490870 | 0.806516 | 7.920329e-50 | -8.615850e-47 |
| Msa0050930 | Msa0516370 | 0.804620 | 1.979375e-49 | -8.615850e-47 |
| Msa0050930 | Msa0525610 | 0.808987 | 2.363663e-50 | -8.615850e-47 |
| Msa0050930 | Msa0526070 | -0.803021 | 4.252595e-49 | -8.615850e-47 |
| Msa0050930 | Msa0526100 | -0.834604 | 2.722270e-56 | -8.615850e-47 |
| Msa0050930 | Msa0536220 | 0.805480 | 1.307768e-49 | -8.615850e-47 |
| Msa0050930 | Msa0542480 | 0.805615 | 1.225258e-49 | -8.615850e-47 |
| Msa0050930 | Msa0548340 | 0.811568 | 6.561371e-51 | -8.615850e-47 |
| Msa0050930 | Msa0559500 | 0.830023 | 3.707908e-55 | -8.615850e-47 |
| Msa0050930 | Msa0572420 | 0.808273 | 3.358664e-50 | -8.615850e-47 |
| Msa0050930 | Msa0572480 | 0.854069 | 1.572919e-61 | -8.615850e-47 |
| Msa0050930 | Msa0574850 | 0.829891 | 3.992787e-55 | -8.615850e-47 |
| Msa0050930 | Msa0579660 | 0.814908 | 1.212340e-51 | -8.615850e-47 |
| Msa0050930 | Msa0580000 | 0.825752 | 3.950133e-54 | -8.615850e-47 |
| Msa0050930 | Msa0598160 | 0.808425 | 3.116510e-50 | -8.615850e-47 |
| Msa0050930 | Msa0613710 | 0.806260 | 8.966894e-50 | -8.615850e-47 |
| Msa0050930 | Msa0658570 | 0.814030 | 1.896018e-51 | -8.615850e-47 |
| Msa0050930 | Msa0661320 | 0.804253 | 2.360985e-49 | -8.615850e-47 |
| Msa0050930 | Msa0680660 | 0.803708 | 3.064935e-49 | -8.615850e-47 |
| Msa0050930 | Msa0688070 | 0.830072 | 3.608823e-55 | -8.615850e-47 |
| Msa0050930 | Msa0691050 | 0.805360 | 1.386260e-49 | -8.615850e-47 |
| Msa0050930 | Msa0698290 | 0.800148 | 1.650940e-48 | -8.615850e-47 |
| Msa0050930 | Msa0711830 | 0.802792 | 4.742845e-49 | -8.615850e-47 |
| Msa0050930 | Msa0712590 | 0.807993 | 3.852699e-50 | -8.615850e-47 |
| Msa0050930 | Msa0724210 | 0.808275 | 3.355099e-50 | -8.615850e-47 |
| Msa0050930 | Msa0745260 | -0.824043 | 9.997265e-54 | -8.615850e-47 |
| Msa0050930 | Msa0750240 | 0.816028 | 6.830066e-52 | -8.615850e-47 |
| Msa0050930 | Msa0751260 | 0.801144 | 1.034245e-48 | -8.615850e-47 |
| Msa0050930 | Msa0753720 | 0.834532 | 2.837848e-56 | -8.615850e-47 |
| Msa0050930 | Msa0760130 | 0.830440 | 2.932946e-55 | -8.615850e-47 |
| Msa0050930 | Msa0763890 | 0.801531 | 8.617382e-49 | -8.615850e-47 |
| Msa0050930 | Msa0763920 | 0.800591 | 1.341080e-48 | -8.615850e-47 |
| Msa0050930 | Msa0768680 | -0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0050930 | Msa0773590 | 0.802525 | 5.382898e-49 | -8.615850e-47 |
| Msa0050930 | Msa0807030 | 0.802347 | 5.858595e-49 | -8.615850e-47 |
| Msa0050930 | Msa0817110 | 0.816260 | 6.060363e-52 | -8.615850e-47 |
| Msa0050930 | Msa0818110 | 0.837590 | 4.751365e-57 | -8.615850e-47 |
| Msa0050930 | Msa0830510 | 0.823413 | 1.403554e-53 | -8.615850e-47 |
| Msa0050930 | Msa0831150 | 0.807326 | 5.339335e-50 | -8.615850e-47 |
| Msa0050930 | Msa0842770 | 0.803557 | 3.292753e-49 | -8.615850e-47 |
| Msa0050930 | Msa0843780 | -0.801329 | 9.476736e-49 | -8.615850e-47 |
| Msa0050930 | Msa0862110 | 0.806105 | 9.666313e-50 | -8.615850e-47 |
| Msa0050930 | Msa0866400 | 0.812475 | 4.160328e-51 | -8.615850e-47 |
| Msa0050930 | Msa0866410 | 0.825193 | 5.355944e-54 | -8.615850e-47 |
| Msa0050930 | Msa0868160 | 0.811050 | 8.498319e-51 | -8.615850e-47 |
| Msa0050930 | Msa0870530 | 0.819579 | 1.078418e-52 | -8.615850e-47 |
| Msa0050930 | Msa0870610 | 0.801371 | 9.293567e-49 | -8.615850e-47 |
| Msa0050930 | Msa0879550 | -0.800098 | 1.690346e-48 | -8.615850e-47 |
| Msa0050930 | Msa0892080 | 0.804935 | 1.700750e-49 | -8.615850e-47 |
| Msa0050930 | Msa0924310 | 0.820869 | 5.461545e-53 | -8.615850e-47 |
| Msa0050930 | Msa0926370 | 0.813638 | 2.312736e-51 | -8.615850e-47 |
| Msa0050930 | Msa0936210 | 0.823844 | 1.112836e-53 | -8.615850e-47 |
| Msa0050930 | Msa0936390 | 0.813721 | 2.217415e-51 | -8.615850e-47 |
| Msa0050930 | Msa0960530 | 0.805117 | 1.558643e-49 | -8.615850e-47 |
| Msa0050930 | Msa0965590 | 0.809659 | 1.696223e-50 | -8.615850e-47 |
| Msa0050930 | Msa0969450 | 0.811368 | 7.250509e-51 | -8.615850e-47 |
| Msa0050930 | Msa0969520 | 0.833646 | 4.731208e-56 | -8.615850e-47 |
| Msa0050930 | Msa0975940 | 0.803146 | 4.007438e-49 | -8.615850e-47 |
| Msa0050930 | Msa0981310 | 0.810487 | 1.124913e-50 | -8.615850e-47 |
| Msa0050930 | Msa0982240 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0050930 | Msa1008750 | 0.809258 | 2.068338e-50 | -8.615850e-47 |
| Msa0050930 | Msa1018990 | -0.803876 | 2.827597e-49 | -8.615850e-47 |
| Msa0050930 | Msa1021510 | 0.846587 | 1.978069e-59 | -8.615850e-47 |
| Msa0050930 | Msa1030720 | 0.804534 | 2.062415e-49 | -8.615850e-47 |
| Msa0050930 | Msa1031910 | 0.811428 | 7.036689e-51 | -8.615850e-47 |
| Msa0050930 | Msa1039710 | -0.812162 | 4.870281e-51 | -8.615850e-47 |
| Msa0050930 | Msa1068200 | -0.819157 | 1.345779e-52 | -8.615850e-47 |
| Msa0050930 | Msa1074530 | 0.800308 | 1.531744e-48 | -8.615850e-47 |
| Msa0050930 | Msa1075220 | -0.825997 | 3.453827e-54 | -8.615850e-47 |
| Msa0050930 | Msa1079430 | 0.839069 | 1.975114e-57 | -8.615850e-47 |
| Msa0050930 | Msa1080160 | 0.822874 | 1.875674e-53 | -8.615850e-47 |
| Msa0050930 | Msa1084260 | 0.815355 | 9.646245e-52 | -8.615850e-47 |
| Msa0050930 | Msa1096060 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
| Msa0050930 | Msa1098250 | 0.814664 | 1.373236e-51 | -8.615850e-47 |
| Msa0050930 | Msa1098270 | 0.822040 | 2.930033e-53 | -8.615850e-47 |
| Msa0050930 | Msa1105500 | 0.837749 | 4.325216e-57 | -8.615850e-47 |
| Msa0050930 | Msa1116130 | -0.808151 | 3.566135e-50 | -8.615850e-47 |
| Msa0050930 | Msa1118610 | 0.803892 | 2.805535e-49 | -8.615850e-47 |
| Msa0050930 | Msa1118760 | 0.832349 | 9.947124e-56 | -8.615850e-47 |
| Msa0050930 | Msa1121490 | 0.827622 | 1.413098e-54 | -8.615850e-47 |
| Msa0050930 | Msa1122370 | -0.803052 | 4.189323e-49 | -8.615850e-47 |
| Msa0050930 | Msa1127770 | 0.815753 | 7.864416e-52 | -8.615850e-47 |
| Msa0050930 | Msa1139000 | -0.835136 | 2.000300e-56 | -8.615850e-47 |
| Msa0050930 | Msa1144720 | -0.818575 | 1.824640e-52 | -8.615850e-47 |
| Msa0050930 | Msa1149710 | 0.812006 | 5.267530e-51 | -8.615850e-47 |
| Msa0050930 | Msa1156340 | -0.808574 | 2.896997e-50 | -8.615850e-47 |
| Msa0050930 | Msa1158310 | 0.822954 | 1.796344e-53 | -8.615850e-47 |
| Msa0050930 | Msa1158660 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0050930 | Msa1158810 | 0.812317 | 4.505542e-51 | -8.615850e-47 |
| Msa0050930 | Msa1162550 | -0.848550 | 5.705710e-60 | -8.615850e-47 |
| Msa0050930 | Msa1166500 | -0.802119 | 6.525399e-49 | -8.615850e-47 |
| Msa0050930 | Msa1177780 | 0.824939 | 6.149469e-54 | -8.615850e-47 |
| Msa0050930 | Msa1188710 | 0.811522 | 6.711944e-51 | -8.615850e-47 |
| Msa0050930 | Msa1224480 | 0.828976 | 6.663753e-55 | -8.615850e-47 |
| Msa0050930 | Msa1227330 | 0.824652 | 7.187035e-54 | -8.615850e-47 |
| Msa0050930 | Msa1239720 | 0.842791 | 2.084154e-58 | -8.615850e-47 |
| Msa0050930 | Msa1243100 | 0.821398 | 4.125028e-53 | -8.615850e-47 |
| Msa0050930 | Msa1255060 | 0.804512 | 2.084641e-49 | -8.615850e-47 |
| Msa0050930 | Msa1257800 | -0.823478 | 1.355375e-53 | -8.615850e-47 |
| Msa0050930 | Msa1264330 | -0.819213 | 1.307248e-52 | -8.615850e-47 |
| Msa0050930 | Msa1264860 | -0.810400 | 1.174578e-50 | -8.615850e-47 |
| Msa0050930 | Msa1267610 | 0.840540 | 8.176255e-58 | -8.615850e-47 |
| Msa0050930 | Msa1333730 | 0.819985 | 8.712618e-53 | -8.615850e-47 |
| Msa0050930 | Msa1359920 | 0.826239 | 3.025498e-54 | -8.615850e-47 |
| Msa0050930 | Msa1366300 | 0.813799 | 2.131325e-51 | -8.615850e-47 |
| Msa0050930 | Msa1372150 | 0.808553 | 2.927491e-50 | -8.615850e-47 |
| Msa0050930 | Msa1376890 | 0.811783 | 5.890510e-51 | -8.615850e-47 |
| Msa0050930 | Msa1378940 | 0.824392 | 8.272968e-54 | -8.615850e-47 |
| Msa0050930 | Msa1379590 | 0.817631 | 2.983913e-52 | -8.615850e-47 |
| Msa0050930 | Msa1379850 | 0.837310 | 5.606531e-57 | -8.615850e-47 |
| Msa0050930 | Msa1392260 | 0.814759 | 1.308052e-51 | -8.615850e-47 |
| Msa0050930 | Msa1398890 | 0.803215 | 3.877017e-49 | -8.615850e-47 |
| Msa0050930 | Msa1402270 | 0.800835 | 1.196213e-48 | -8.615850e-47 |
| Msa0050930 | Msa1408620 | -0.813956 | 1.968931e-51 | -8.615850e-47 |
| Msa0050930 | Msa1410210 | 0.816247 | 6.100301e-52 | -8.615850e-47 |
| Msa0050930 | Msa1418440 | 0.840571 | 8.024332e-58 | -8.615850e-47 |
| Msa0050930 | Msa1424640 | 0.816985 | 4.170446e-52 | -8.615850e-47 |
| Msa0050930 | Msa1433220 | 0.810961 | 8.885960e-51 | -8.615850e-47 |
| Msa0050930 | Msa1435400 | 0.839621 | 1.420387e-57 | -8.615850e-47 |
| Msa0050930 | Msa1440940 | 0.867049 | 1.821794e-65 | -8.615850e-47 |
| Msa0050930 | Msa1445030 | 0.807996 | 3.847508e-50 | -8.615850e-47 |
| Msa0050930 | Msa1447150 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
| Msa0050930 | Msa1451620 | -0.805774 | 1.134771e-49 | -8.615850e-47 |
| Msa0050930 | Msa1459050 | 0.896834 | 2.520476e-76 | -8.615850e-47 |
| Msa0050930 | Msa1461810 | -0.801405 | 9.144986e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050930 | MtrunA17_Chr1g0155681 | 96.332 | 627 | 10 | 1 | 1 | 614 | 1 | 627 | 0.0 | 1251 |
| Msa0050930 | MtrunA17_Chr3g0141941 | 64.693 | 456 | 115 | 11 | 1 | 432 | 1 | 434 | 0.0 | 543 |
| Msa0050930 | MtrunA17_Chr3g0141941 | 61.000 | 100 | 28 | 5 | 526 | 614 | 418 | 517 | 2.94e-22 | 100 |
| Msa0050930 | MtrunA17_Chr1g0177751 | 54.941 | 253 | 86 | 5 | 172 | 404 | 163 | 407 | 1.14e-79 | 264 |
| Msa0050930 | MtrunA17_Chr7g0267481 | 55.390 | 269 | 94 | 5 | 172 | 420 | 173 | 435 | 1.54e-77 | 259 |
| Msa0050930 | MtrunA17_Chr8g0373801 | 50.365 | 274 | 101 | 5 | 173 | 421 | 391 | 654 | 1.03e-76 | 261 |
| Msa0050930 | MtrunA17_Chr5g0403251 | 48.582 | 282 | 108 | 6 | 165 | 421 | 333 | 602 | 1.22e-75 | 256 |
| Msa0050930 | MtrunA17_Chr4g0025521 | 54.478 | 268 | 94 | 5 | 171 | 418 | 218 | 477 | 2.32e-75 | 254 |
| Msa0050930 | MtrunA17_Chr3g0141931 | 49.296 | 284 | 86 | 9 | 173 | 422 | 168 | 427 | 1.51e-68 | 229 |
| Msa0050930 | MtrunA17_Chr8g0387321 | 49.035 | 259 | 93 | 6 | 173 | 406 | 188 | 432 | 1.67e-67 | 231 |
| Msa0050930 | MtrunA17_Chr4g0028701 | 35.309 | 405 | 181 | 11 | 173 | 520 | 248 | 628 | 3.14e-55 | 198 |
| Msa0050930 | MtrunA17_Chr7g0240371 | 39.286 | 308 | 130 | 9 | 174 | 449 | 141 | 423 | 6.55e-53 | 189 |
| Msa0050930 | MtrunA17_Chr4g0008591 | 41.473 | 258 | 108 | 6 | 173 | 413 | 199 | 430 | 4.68e-50 | 183 |
| Msa0050930 | MtrunA17_Chr2g0327021 | 46.114 | 193 | 85 | 2 | 249 | 422 | 326 | 518 | 2.66e-47 | 176 |
| Msa0050930 | MtrunA17_Chr1g0151681 | 36.923 | 260 | 134 | 5 | 172 | 412 | 245 | 493 | 5.83e-40 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050930 | AT2G16400.1 | 59.929 | 282 | 65 | 7 | 173 | 430 | 117 | 374 | 8.93e-101 | 315 |
| Msa0050930 | AT1G19700.1 | 48.556 | 381 | 119 | 10 | 79 | 416 | 78 | 424 | 2.65e-98 | 310 |
| Msa0050930 | AT1G19700.3 | 48.556 | 381 | 119 | 10 | 79 | 416 | 78 | 424 | 2.65e-98 | 310 |
| Msa0050930 | AT1G19700.5 | 48.556 | 381 | 119 | 10 | 79 | 416 | 78 | 424 | 2.65e-98 | 310 |
| Msa0050930 | AT1G19700.4 | 48.556 | 381 | 119 | 10 | 79 | 416 | 78 | 424 | 2.65e-98 | 310 |
| Msa0050930 | AT1G19700.2 | 48.556 | 381 | 119 | 10 | 79 | 416 | 78 | 424 | 2.65e-98 | 310 |
| Msa0050930 | AT1G75410.1 | 58.824 | 272 | 68 | 6 | 171 | 417 | 168 | 420 | 1.69e-96 | 305 |
| Msa0050930 | AT1G75410.2 | 58.824 | 272 | 68 | 6 | 171 | 417 | 168 | 420 | 1.69e-96 | 305 |
| Msa0050930 | AT4G34610.2 | 53.538 | 325 | 100 | 7 | 173 | 469 | 143 | 444 | 1.26e-95 | 303 |
| Msa0050930 | AT4G34610.4 | 53.538 | 325 | 100 | 7 | 173 | 469 | 143 | 444 | 1.26e-95 | 303 |
| Msa0050930 | AT4G34610.3 | 53.538 | 325 | 100 | 7 | 173 | 469 | 143 | 444 | 1.26e-95 | 303 |
| Msa0050930 | AT4G34610.1 | 53.538 | 325 | 100 | 7 | 173 | 469 | 143 | 444 | 1.26e-95 | 303 |
| Msa0050930 | AT1G75410.3 | 54.656 | 247 | 68 | 6 | 169 | 390 | 166 | 393 | 5.88e-75 | 245 |
| Msa0050930 | AT2G23760.2 | 49.057 | 265 | 97 | 5 | 173 | 411 | 240 | 492 | 5.55e-71 | 241 |
| Msa0050930 | AT2G23760.1 | 49.057 | 265 | 97 | 5 | 173 | 411 | 240 | 492 | 5.55e-71 | 241 |
| Msa0050930 | AT2G23760.3 | 49.057 | 265 | 97 | 5 | 173 | 411 | 240 | 492 | 5.55e-71 | 241 |
| Msa0050930 | AT4G36870.2 | 49.813 | 267 | 93 | 6 | 173 | 412 | 315 | 567 | 8.11e-71 | 243 |
| Msa0050930 | AT4G36870.1 | 49.813 | 267 | 93 | 6 | 173 | 412 | 315 | 567 | 8.11e-71 | 243 |
| Msa0050930 | AT2G35940.3 | 51.724 | 261 | 97 | 5 | 170 | 404 | 189 | 446 | 8.83e-71 | 242 |
| Msa0050930 | AT2G35940.1 | 51.724 | 261 | 97 | 5 | 170 | 404 | 189 | 446 | 8.83e-71 | 242 |
| Msa0050930 | AT2G35940.2 | 51.724 | 261 | 97 | 5 | 170 | 404 | 189 | 446 | 8.83e-71 | 242 |
| Msa0050930 | AT2G23760.4 | 41.009 | 317 | 97 | 6 | 173 | 411 | 240 | 544 | 3.83e-61 | 215 |
| Msa0050930 | AT5G41410.1 | 45.818 | 275 | 106 | 6 | 173 | 413 | 196 | 461 | 4.50e-61 | 214 |
| Msa0050930 | AT2G27220.1 | 42.857 | 266 | 97 | 7 | 171 | 419 | 77 | 304 | 3.25e-58 | 202 |
| Msa0050930 | AT2G27220.3 | 42.857 | 266 | 97 | 7 | 171 | 419 | 77 | 304 | 3.25e-58 | 202 |
| Msa0050930 | AT2G27220.2 | 43.678 | 261 | 120 | 7 | 171 | 419 | 77 | 322 | 1.37e-57 | 201 |
| Msa0050930 | AT1G75430.1 | 40.293 | 273 | 122 | 8 | 172 | 417 | 18 | 276 | 2.27e-55 | 190 |
| Msa0050930 | AT4G36870.4 | 46.341 | 246 | 91 | 6 | 173 | 391 | 315 | 546 | 1.13e-54 | 195 |
| Msa0050930 | AT4G36870.3 | 46.311 | 244 | 90 | 6 | 173 | 389 | 315 | 544 | 8.06e-54 | 193 |
| Msa0050930 | AT5G02030.1 | 40.520 | 269 | 107 | 7 | 174 | 413 | 174 | 418 | 4.05e-48 | 177 |
| Msa0050930 | AT2G27990.1 | 43.460 | 237 | 105 | 6 | 216 | 432 | 289 | 516 | 1.19e-46 | 173 |
| Msa0050930 | AT4G32980.1 | 39.526 | 253 | 123 | 8 | 174 | 412 | 205 | 441 | 4.26e-39 | 150 |
| Msa0050930 | AT4G32980.2 | 39.526 | 253 | 123 | 8 | 174 | 412 | 205 | 441 | 4.26e-39 | 150 |
| Msa0050930 | AT1G75430.2 | 32.444 | 225 | 111 | 8 | 172 | 369 | 18 | 228 | 2.23e-23 | 100 |
| Msa0050930 | AT2G27990.2 | 37.427 | 171 | 81 | 5 | 216 | 369 | 289 | 450 | 2.59e-20 | 94.7 |
Find 196 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATATCAGTTTGAAATT+TGG | 0.123735 | 1_2:-4940352 | Msa0050930:three_prime_UTR |
| TCATAATTGTACCTGGTTTC+TGG | 0.152099 | 1_2:+4941423 | None:intergenic |
| AAAGAGAAATAGTACCTTTC+AGG | 0.209078 | 1_2:+4944098 | None:intergenic |
| TCCTTTGAGTCAATTGAATT+TGG | 0.219438 | 1_2:+4941774 | None:intergenic |
| TTCGAGTGTGGGATGATAAA+AGG | 0.235165 | 1_2:-4941018 | Msa0050930:CDS |
| TTATGCAGCCATCACCATTT+TGG | 0.238602 | 1_2:+4940765 | None:intergenic |
| TCCAAACACATCAAAATCTT+TGG | 0.243530 | 1_2:-4940158 | Msa0050930:three_prime_UTR |
| TGCATGGCATCTTTGTCTTC+TGG | 0.248717 | 1_2:-4942934 | Msa0050930:CDS |
| CAAGTTGATTCCATTGTTTA+AGG | 0.268533 | 1_2:-4943376 | Msa0050930:five_prime_UTR |
| TGCGGAACGACAGCATTTAT+TGG | 0.269167 | 1_2:-4942572 | Msa0050930:CDS |
| GAGATAGGTGGATTTGAATA+AGG | 0.271180 | 1_2:+4940794 | None:intergenic |
| CATCATCAATATCATGAATA+AGG | 0.288318 | 1_2:-4939867 | Msa0050930:three_prime_UTR |
| TCTTACGCGGAGATGATATC+TGG | 0.303124 | 1_2:-4943276 | Msa0050930:CDS |
| TTAATGCGAGGGTGCGTCTT+TGG | 0.310569 | 1_2:-4941144 | Msa0050930:CDS |
| CCAATGATGACATCAATAAA+AGG | 0.314376 | 1_2:-4940625 | Msa0050930:CDS |
| GATCAGATTGCCCTTCATTA+AGG | 0.326393 | 1_2:+4942854 | None:intergenic |
| CGGTTTGTTTCAAGCCCTTT+CGG | 0.335842 | 1_2:+4942737 | None:intergenic |
| AGTATTGACACAGAGCTTTC+AGG | 0.345023 | 1_2:+4941632 | None:intergenic |
| CCTATCTCAATCAACCAAAA+TGG | 0.345586 | 1_2:-4940779 | Msa0050930:CDS |
| AATGTGATGGATTCTAGAAT+TGG | 0.353123 | 1_2:-4940860 | Msa0050930:CDS |
| AACTCTGAAAGTGATGGATT+TGG | 0.353605 | 1_2:-4940653 | Msa0050930:CDS |
| GAATAACTGCTGATCCTTGC+AGG | 0.353930 | 1_2:+4942827 | None:intergenic |
| GAATATGCTGTCTATTGATC+AGG | 0.361084 | 1_2:-4943169 | Msa0050930:CDS |
| TGTTCATGTTAAACCTTTGT+TGG | 0.369527 | 1_2:+4940822 | None:intergenic |
| CAATGCGTTCACATTGTACT+AGG | 0.370121 | 1_2:+4939820 | None:intergenic |
| ATCAGAATTCATCATATTCA+TGG | 0.380736 | 1_2:-4940257 | Msa0050930:three_prime_UTR |
| TCATCGTCTCTCAGAGCTTT+CGG | 0.386352 | 1_2:+4941043 | None:intergenic |
| AGAGAGGAAGAGGAGGGAAA+AGG | 0.390156 | 1_2:+4944127 | None:intergenic |
| GTTGAAGTTTATGACATCTA+TGG | 0.390672 | 1_2:-4943202 | Msa0050930:CDS |
| CTTTCTGCTCCCTTAAACAA+TGG | 0.392318 | 1_2:+4943366 | None:intergenic |
| GATAAATCATCATAAGTTGT+AGG | 0.393638 | 1_2:+4940731 | None:intergenic |
| TTGTTTGCATTAGAACCATT+AGG | 0.396087 | 1_2:+4942616 | None:intergenic |
| CAAGTATCTTCAGGCCCTAA+TGG | 0.396669 | 1_2:-4942631 | Msa0050930:CDS |
| CAAAGAAGAGTTTGGTGATT+CGG | 0.398248 | 1_2:-4941098 | Msa0050930:CDS |
| TTGTAATATTGTGGGGTGAT+TGG | 0.401084 | 1_2:-4939941 | Msa0050930:three_prime_UTR |
| AGGGCCTGTCTCTTAGCCTT+GGG | 0.402513 | 1_2:-4943071 | Msa0050930:CDS |
| TATAATCCACATCCTTCAAT+AGG | 0.405384 | 1_2:-4942877 | Msa0050930:CDS |
| TCAAAGGAGCCTTGGAGAAC+AGG | 0.407571 | 1_2:-4941759 | Msa0050930:CDS |
| TGTTTGCATTAGAACCATTA+GGG | 0.408633 | 1_2:+4942617 | None:intergenic |
| GGATACATTGTAAGCAAGAT+TGG | 0.408759 | 1_2:+4943321 | None:intergenic |
| CAGGGCCTGTCTCTTAGCCT+TGG | 0.411685 | 1_2:-4943072 | Msa0050930:CDS |
| ATTCATATCAGGTGGCGAAT+TGG | 0.412122 | 1_2:-4941171 | Msa0050930:intron |
| GAACAACAAGGTCAAATTGC+AGG | 0.412751 | 1_2:-4940956 | Msa0050930:CDS |
| CCCGAAGAAAACGCTTGGTT+CGG | 0.414480 | 1_2:+4943300 | None:intergenic |
| GGAAAGCAACAACACAAGTT+TGG | 0.415587 | 1_2:-4940539 | Msa0050930:CDS |
| GAAGTGAGAAGAAGGAAGAA+AGG | 0.417964 | 1_2:+4944151 | None:intergenic |
| CCTTAACTCTCATTACCTTA+AGG | 0.423186 | 1_2:-4942794 | Msa0050930:CDS |
| GAAGGGGTCTGCATCTCTTA+AGG | 0.423750 | 1_2:-4942971 | Msa0050930:CDS |
| TGAATTGAAAGAACCGTGTT+TGG | 0.424045 | 1_2:-4940485 | Msa0050930:three_prime_UTR |
| ATCCTCCTCAACCACAGAAT+TGG | 0.427692 | 1_2:-4940915 | Msa0050930:CDS |
| ATCATGTTGGCAAGACAAAC+AGG | 0.427985 | 1_2:-4941451 | Msa0050930:CDS |
| AAAGGGAAGAAGAGGTTAAG+AGG | 0.428172 | 1_2:+4944169 | None:intergenic |
| AAGTTGATTCCATTGTTTAA+GGG | 0.429773 | 1_2:-4943375 | Msa0050930:five_prime_UTR |
| GGAAACACGGTGGCTATATC+AGG | 0.433514 | 1_2:+4940178 | None:intergenic |
| TTATCAGAGTTGAATAACTT+TGG | 0.446808 | 1_2:-4940713 | Msa0050930:CDS |
| ACAGCGAAAGTGACGGGAAA+TGG | 0.449081 | 1_2:+4941817 | None:intergenic |
| TGCGCAAATCTCAAACTTGA+AGG | 0.449976 | 1_2:-4942989 | Msa0050930:CDS |
| TAGTCTAACAAATCAGTATC+TGG | 0.450445 | 1_2:+4940578 | None:intergenic |
| ACGAGTCCGAACTGTGTCCT+TGG | 0.450686 | 1_2:+4943120 | None:intergenic |
| CTTAAGGTAATGAGAGTTAA+GGG | 0.452147 | 1_2:+4942795 | None:intergenic |
| GAAATAGTACCTTTCAGGAT+AGG | 0.454102 | 1_2:+4944103 | None:intergenic |
| CCTTAAGGTAATGAGAGTTA+AGG | 0.455316 | 1_2:+4942794 | None:intergenic |
| TAGCGAGGTGAAACTGTTGC+CGG | 0.455506 | 1_2:+4943017 | None:intergenic |
| AAATGGTGATGGCTGCATAA+TGG | 0.456126 | 1_2:-4940762 | Msa0050930:CDS |
| GAAGTTCCTGTGCTGCCTTA+AGG | 0.456385 | 1_2:+4942779 | None:intergenic |
| TCTATCCAATTCTGTGGTTG+AGG | 0.458494 | 1_2:+4940910 | None:intergenic |
| CGAGCAAAACGTACAATGCC+AGG | 0.460386 | 1_2:-4943091 | Msa0050930:CDS |
| TTGTACATTTCTTCGACCAT+TGG | 0.464693 | 1_2:+4941118 | None:intergenic |
| TTTGACATGGTTGCTGGTTG+CGG | 0.469668 | 1_2:-4941875 | Msa0050930:CDS |
| GACTATCACTTCACAGACTC+TGG | 0.470328 | 1_2:-4940560 | Msa0050930:CDS |
| AAATAGTACCTTTCAGGATA+GGG | 0.470438 | 1_2:+4944104 | None:intergenic |
| GATTTCAAAACAATGTCAAA+AGG | 0.470576 | 1_2:-4942909 | Msa0050930:CDS |
| GAAAAGGTGAAGTGAGAAGA+AGG | 0.473764 | 1_2:+4944143 | None:intergenic |
| TTAAGGCCTATTGAAGGATG+TGG | 0.474446 | 1_2:+4942871 | None:intergenic |
| CCTTCATTAAGGCCTATTGA+AGG | 0.476704 | 1_2:+4942865 | None:intergenic |
| ATGTGATGGATTCTAGAATT+GGG | 0.476805 | 1_2:-4940859 | Msa0050930:CDS |
| CGAAAGGGCTTGAAACAAAC+CGG | 0.477844 | 1_2:-4942736 | Msa0050930:CDS |
| TCGAGTGTGGGATGATAAAA+GGG | 0.478699 | 1_2:-4941017 | Msa0050930:CDS |
| GATAGGGAGAGAGGAAGAGG+AGG | 0.479297 | 1_2:+4944120 | None:intergenic |
| CAGGATAGGGAGAGAGGAAG+AGG | 0.481167 | 1_2:+4944117 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.481440 | 1_2:-4941106 | Msa0050930:CDS |
| GGATTCAAAGTAGTGATCAT+TGG | 0.484660 | 1_2:-4940886 | Msa0050930:CDS |
| CAATCTATGCAAGTATCTTC+AGG | 0.487753 | 1_2:-4942640 | Msa0050930:CDS |
| TTGAATAACTTTGGTGTTGG+TGG | 0.488559 | 1_2:-4940704 | Msa0050930:CDS |
| CCTTCAATAGGCCTTAATGA+AGG | 0.490236 | 1_2:-4942865 | Msa0050930:CDS |
| AAGTGAGAAGAAGGAAGAAA+GGG | 0.492956 | 1_2:+4944152 | None:intergenic |
| GAAGGAAGAAAGGGAAGAAG+AGG | 0.495040 | 1_2:+4944161 | None:intergenic |
| CAATTGACTCAAAGGAGCCT+TGG | 0.496196 | 1_2:-4941767 | Msa0050930:CDS |
| GACAAGTTAATGAATGTTGA+TGG | 0.500544 | 1_2:-4940983 | Msa0050930:CDS |
| ACGCAAACAGCGAAAGTGAC+GGG | 0.500857 | 1_2:+4941811 | None:intergenic |
| ACAGATTCACTGTAATTATG+AGG | 0.502023 | 1_2:+4943240 | None:intergenic |
| TCCTTTCAATATCAGTATCC+CGG | 0.503550 | 1_2:-4943036 | Msa0050930:CDS |
| TCAACCACAGAATTGGATAG+AGG | 0.504097 | 1_2:-4940908 | Msa0050930:CDS |
| AGCAAGAGCAGTGTATGGTT+CGG | 0.505239 | 1_2:+4941847 | None:intergenic |
| TGAGAGTTAAGGGCATTGTT+CGG | 0.506066 | 1_2:+4942805 | None:intergenic |
| ACAACATTGACCGTTGGATC+AGG | 0.506924 | 1_2:+4940319 | None:intergenic |
| GCCAAATTCAATTGACTCAA+AGG | 0.508585 | 1_2:-4941775 | Msa0050930:CDS |
| GATGCTTCCAAAGATTCTGA+TGG | 0.513635 | 1_2:-4942676 | Msa0050930:CDS |
| CGCAAAGCAAGAGCAGTGTA+TGG | 0.513848 | 1_2:+4941842 | None:intergenic |
| ATAGGGAGAGAGGAAGAGGA+GGG | 0.514450 | 1_2:+4944121 | None:intergenic |
| GAAATAGTTAATGTCCGAAA+GGG | 0.516547 | 1_2:-4942751 | Msa0050930:CDS |
| CAAGGCTAAGAGACAGGCCC+TGG | 0.521258 | 1_2:+4943073 | None:intergenic |
| TCCTCTCTCCCTATCCTGAA+AGG | 0.524469 | 1_2:-4944112 | Msa0050930:intron |
| ACAAACTCGTGCAACAAATG+TGG | 0.529085 | 1_2:+4940512 | None:intergenic |
| TTGTCCCAAGGCTAAGAGAC+AGG | 0.530080 | 1_2:+4943067 | None:intergenic |
| TGGATCGCTCGTACTAGCAT+TGG | 0.530376 | 1_2:+4943140 | None:intergenic |
| AATAAATGCTGTCGTTCCGC+AGG | 0.530460 | 1_2:+4942574 | None:intergenic |
| GGGCTTGAAACAAACCGGAT+TGG | 0.530868 | 1_2:-4942731 | Msa0050930:CDS |
| AATCCCTCTATCCAATTCTG+TGG | 0.532847 | 1_2:+4940904 | None:intergenic |
| AACAGGCTTGACCAGAAACC+AGG | 0.533633 | 1_2:-4941434 | Msa0050930:intron |
| CGCAAATCTCAAACTTGAAG+GGG | 0.537507 | 1_2:-4942987 | Msa0050930:CDS |
| TGTTTGCGTGATGCTATTAG+CGG | 0.542554 | 1_2:-4941797 | Msa0050930:CDS |
| ATAGGGGAACCTACGGATGA+AGG | 0.542920 | 1_2:+4941585 | None:intergenic |
| TTTCACTTGCATTAGAGTTG+AGG | 0.543423 | 1_2:-4940676 | Msa0050930:CDS |
| ATGGCATCTTTGTCTTCTGG+AGG | 0.543573 | 1_2:-4942931 | Msa0050930:CDS |
| ATTTCAAAACAATGTCAAAA+GGG | 0.546039 | 1_2:-4942908 | Msa0050930:CDS |
| AGCGATCCAAGGACACAGTT+CGG | 0.549071 | 1_2:-4943126 | Msa0050930:CDS |
| GTTACCACATCAACGGTTGT+TGG | 0.551612 | 1_2:-4940416 | Msa0050930:three_prime_UTR |
| ACACAAAGCAACAGCAGCAT+AGG | 0.560816 | 1_2:+4940060 | None:intergenic |
| AATATGCTGTCTATTGATCA+GGG | 0.561372 | 1_2:-4943168 | Msa0050930:CDS |
| TCATTACCTTAAGGCAGCAC+AGG | 0.563750 | 1_2:-4942785 | Msa0050930:CDS |
| AAGAATCCACAGTGTGGGGA+AGG | 0.564198 | 1_2:+4944220 | None:intergenic |
| AGCGAGGTGAAACTGTTGCC+GGG | 0.566022 | 1_2:+4943018 | None:intergenic |
| TTGAGGAACTCTGAAAGTGA+TGG | 0.567032 | 1_2:-4940659 | Msa0050930:CDS |
| GCGCAAATCTCAAACTTGAA+GGG | 0.567269 | 1_2:-4942988 | Msa0050930:CDS |
| GAGACAAGAATCCACAGTGT+GGG | 0.568549 | 1_2:+4944215 | None:intergenic |
| CTTCAATAGGCCTTAATGAA+GGG | 0.568757 | 1_2:-4942864 | Msa0050930:CDS |
| ATCCAATTCTGTGGTTGAGG+AGG | 0.571241 | 1_2:+4940913 | None:intergenic |
| CTGTGTCAATACTCCGTGCA+TGG | 0.572034 | 1_2:-4941622 | Msa0050930:CDS |
| ACCTTTCAGGATAGGGAGAG+AGG | 0.572140 | 1_2:+4944111 | None:intergenic |
| ATTTGGTATTAGTTATCCGA+AGG | 0.572160 | 1_2:-4941485 | Msa0050930:intron |
| TCAATCAACCAAAATGGTGA+TGG | 0.572460 | 1_2:-4940773 | Msa0050930:CDS |
| CAAAACAATGTCAAAAGGGA+GGG | 0.573643 | 1_2:-4942904 | Msa0050930:CDS |
| ACTGCTGATCCTTGCAGGCA+CGG | 0.574395 | 1_2:+4942832 | None:intergenic |
| CAAACTCGTGCAACAAATGT+GGG | 0.576826 | 1_2:+4940513 | None:intergenic |
| AAGATCCCGAAGAAAACGCT+TGG | 0.576848 | 1_2:+4943295 | None:intergenic |
| CGAATTGGTTTATTAATGCG+AGG | 0.577323 | 1_2:-4941156 | Msa0050930:CDS |
| TGAAATAGTTAATGTCCGAA+AGG | 0.577336 | 1_2:-4942752 | Msa0050930:CDS |
| CTTACGCGGAGATGATATCT+GGG | 0.578743 | 1_2:-4943275 | Msa0050930:CDS |
| AAATGCAAGGTGACCAACAA+AGG | 0.584563 | 1_2:-4940835 | Msa0050930:CDS |
| GGATACTGATATTGAAAGGA+AGG | 0.586079 | 1_2:+4943039 | None:intergenic |
| TCTAGAATTGGGAAAATGCA+AGG | 0.587723 | 1_2:-4940848 | Msa0050930:CDS |
| CGATCCAACAACCGTTGATG+TGG | 0.588635 | 1_2:+4940412 | None:intergenic |
| GTATTCCCTCCTGTTCTCCA+AGG | 0.589107 | 1_2:+4941750 | None:intergenic |
| GCTATATCAGGACGCACGAT+CGG | 0.589739 | 1_2:+4940190 | None:intergenic |
| CAACCACAGAATTGGATAGA+GGG | 0.589884 | 1_2:-4940907 | Msa0050930:CDS |
| TGCATCTCTTAAGGATGATG+AGG | 0.590655 | 1_2:-4942962 | Msa0050930:CDS |
| ATGCTAGTACGAGCGATCCA+AGG | 0.594612 | 1_2:-4943137 | Msa0050930:CDS |
| CATAATTACAGTGAATCTGT+AGG | 0.596692 | 1_2:-4943237 | Msa0050930:CDS |
| AAAGAACCGTGTTTGGAGAG+CGG | 0.596908 | 1_2:-4940478 | Msa0050930:three_prime_UTR |
| CAATCTGATCCGTGCCTGCA+AGG | 0.597181 | 1_2:-4942841 | Msa0050930:CDS |
| GTCATCACAACATTGACCGT+TGG | 0.599072 | 1_2:+4940313 | None:intergenic |
| ACTCTAATGCAAGTGAAACA+TGG | 0.600932 | 1_2:+4940681 | None:intergenic |
| GCCGGGATACTGATATTGAA+AGG | 0.601547 | 1_2:+4943035 | None:intergenic |
| AAGGAGCCTTGGAGAACAGG+AGG | 0.601817 | 1_2:-4941756 | Msa0050930:CDS |
| ATCATCCGATCCTGATCCAA+CGG | 0.601994 | 1_2:-4940329 | Msa0050930:three_prime_UTR |
| AACAACAAGGTCAAATTGCA+GGG | 0.603207 | 1_2:-4940955 | Msa0050930:CDS |
| CACGCAAACAGCGAAAGTGA+CGG | 0.607447 | 1_2:+4941810 | None:intergenic |
| TCAAAACAATGTCAAAAGGG+AGG | 0.609941 | 1_2:-4942905 | Msa0050930:CDS |
| ATTGACCGTTGGATCAGGAT+CGG | 0.612279 | 1_2:+4940324 | None:intergenic |
| TGATCATTGGACAAATGTGA+TGG | 0.613913 | 1_2:-4940873 | Msa0050930:CDS |
| GAGTTGAATAACTTTGGTGT+TGG | 0.616287 | 1_2:-4940707 | Msa0050930:CDS |
| GAATTGGTTTATTAATGCGA+GGG | 0.617226 | 1_2:-4941155 | Msa0050930:CDS |
| GGATGATGAGGCTGAGTGCA+TGG | 0.618918 | 1_2:-4942950 | Msa0050930:CDS |
| GGTGCGTCTTTGGAAACCAA+TGG | 0.625023 | 1_2:-4941134 | Msa0050930:CDS |
| GGATTCAGAGAAAATCATGT+TGG | 0.625560 | 1_2:-4941464 | Msa0050930:CDS |
| AGACAAGAATCCACAGTGTG+GGG | 0.626810 | 1_2:+4944216 | None:intergenic |
| TAAAAGGCGTAATCAAACAA+TGG | 0.626825 | 1_2:-4940609 | Msa0050930:CDS |
| GTCTGACCTTCCCCACACTG+TGG | 0.629189 | 1_2:-4944226 | Msa0050930:five_prime_UTR |
| ATATGTCCGCTCTCCAAACA+CGG | 0.629785 | 1_2:+4940472 | None:intergenic |
| TAACGCAGTTACCACATCAA+CGG | 0.633228 | 1_2:-4940423 | Msa0050930:three_prime_UTR |
| GATTTGCGCATTCATTAGCG+AGG | 0.633287 | 1_2:+4943002 | None:intergenic |
| AGACGATGATGTTCGAGTGT+GGG | 0.634657 | 1_2:-4941029 | Msa0050930:CDS |
| AAGGTTTACCTCATCCAACA+TGG | 0.638250 | 1_2:+4942528 | None:intergenic |
| TTCATGTGAGCTATCGCCTG+CGG | 0.643410 | 1_2:-4942590 | Msa0050930:CDS |
| TGTGGGGAAGGTCAGACAAG+TGG | 0.650144 | 1_2:+4944232 | None:intergenic |
| GAGACGATGATGTTCGAGTG+TGG | 0.650382 | 1_2:-4941030 | Msa0050930:CDS |
| AGAGACAAGAATCCACAGTG+TGG | 0.658894 | 1_2:+4944214 | None:intergenic |
| AGGAAGGCATCATTGTCCCA+AGG | 0.659671 | 1_2:+4943055 | None:intergenic |
| TGATCGACATAGCGGAGACG+AGG | 0.663796 | 1_2:+4941728 | None:intergenic |
| AGGAGCCTTGGAGAACAGGA+GGG | 0.665826 | 1_2:-4941755 | Msa0050930:CDS |
| AATGCTCGAAGAGCCATGCA+CGG | 0.666429 | 1_2:+4941609 | None:intergenic |
| GAGCAAAACGTACAATGCCA+GGG | 0.666769 | 1_2:-4943090 | Msa0050930:CDS |
| TTGGTGTAATGAGACAAGCT+TGG | 0.669718 | 1_2:-4941673 | Msa0050930:CDS |
| CAAGCTTGGAGACCTCAGAG+AGG | 0.678920 | 1_2:-4941659 | Msa0050930:CDS |
| AGATTAGCTTTAAAGCAACA+AGG | 0.680083 | 1_2:-4943432 | Msa0050930:five_prime_UTR |
| TATAGCTTTATGATTCACTG+TGG | 0.698749 | 1_2:+4940016 | None:intergenic |
| ATATGCTGTCTATTGATCAG+GGG | 0.700074 | 1_2:-4943167 | Msa0050930:CDS |
| GTTGATGGTGCTGAACAACA+AGG | 0.707575 | 1_2:-4940968 | Msa0050930:CDS |
| TAAGCTGCTGATCGACATAG+CGG | 0.719259 | 1_2:+4941720 | None:intergenic |
| CTTTCAGGAAGTCCTCTCTG+AGG | 0.726595 | 1_2:+4941647 | None:intergenic |
| GGTAACTGCGTTAATGCATG+AGG | 0.729879 | 1_2:+4940433 | None:intergenic |
| ATGCATGAGATTGTTGACTG+TGG | 0.741443 | 1_2:-4940283 | Msa0050930:three_prime_UTR |
| ACCGTGCAAAATATACACGT+AGG | 0.777231 | 1_2:-4939981 | Msa0050930:three_prime_UTR |
| TGATGTGTTTGGAAACACGG+TGG | 0.799998 | 1_2:+4940168 | None:intergenic |
| GTAGCTTTGAGATAGATGTG+CGG | 0.807225 | 1_2:+4940229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAAAGTGAAAAATA+AGG | - | chr1_2:4940044-4940063 | Msa0050930:three_prime_UTR | 10.0% |
| !!! | TTTTGCTTATAAAAAAAAAT+GGG | - | chr1_2:4940254-4940273 | Msa0050930:three_prime_UTR | 10.0% |
| !!! | TTTATTAATTTTCCTAATTA+AGG | - | chr1_2:4940560-4940579 | Msa0050930:CDS | 10.0% |
| !!! | AATTTGTTTTAAATTTCATT+TGG | - | chr1_2:4942553-4942572 | Msa0050930:CDS | 10.0% |
| !!! | TTTTTTAATGTTTTTTTTGA+AGG | - | chr1_2:4943923-4943942 | Msa0050930:intron | 10.0% |
| !! | TAATTATTGCTAAAAAAAGA+TGG | - | chr1_2:4940075-4940094 | Msa0050930:three_prime_UTR | 15.0% |
| !!! | CTTTTGCTTATAAAAAAAAA+TGG | - | chr1_2:4940253-4940272 | Msa0050930:three_prime_UTR | 15.0% |
| !!! | ATTTATATGTTTTATACGTA+TGG | + | chr1_2:4941582-4941601 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAATGAGTATA+GGG | + | chr1_2:4942490-4942509 | None:intergenic | 15.0% |
| !! | AATGAAAAAAAAATGAGTAT+AGG | + | chr1_2:4942491-4942510 | None:intergenic | 15.0% |
| !!! | ACTCATTTTTTTTTCATTAA+TGG | - | chr1_2:4942493-4942512 | Msa0050930:intron | 15.0% |
| !! | AATGTAAAATGATTTATGTT+TGG | + | chr1_2:4942764-4942783 | None:intergenic | 15.0% |
| !!! | TAAAATATCAGTTTGAAATT+TGG | - | chr1_2:4943703-4943722 | Msa0050930:intron | 15.0% |
| !! | ATTTCAAAACAATGTCAAAA+GGG | - | chr1_2:4941147-4941166 | Msa0050930:CDS | 20.0% |
| !! | TGAAAAAAAAATGAGTATAG+GGG | + | chr1_2:4942489-4942508 | None:intergenic | 20.0% |
| !! | ATCACTATTTAATTCATATC+AGG | - | chr1_2:4942873-4942892 | Msa0050930:CDS | 20.0% |
| !!! | ATAGTGTTTTGTAATATTGT+GGG | - | chr1_2:4944106-4944125 | Msa0050930:intron | 20.0% |
| ! | TTATTGCTAAAAAAAGATGG+TGG | - | chr1_2:4940078-4940097 | Msa0050930:three_prime_UTR | 25.0% |
| ! | TGACTTCAAAAACTACAATA+GGG | - | chr1_2:4940377-4940396 | Msa0050930:three_prime_UTR | 25.0% |
| ! | TGCTATTAAAGACCTTAATT+AGG | + | chr1_2:4940575-4940594 | None:intergenic | 25.0% |
| ! | AGTTAAAATAATCCAAAGTG+AGG | + | chr1_2:4940602-4940621 | None:intergenic | 25.0% |
| !!! | TATTTTAGTAATCTTGTTGC+TGG | - | chr1_2:4940650-4940669 | Msa0050930:CDS | 25.0% |
| !! | AAGTTGATTCCATTGTTTAA+GGG | - | chr1_2:4940680-4940699 | Msa0050930:CDS | 25.0% |
| ! | GATTTCAAAACAATGTCAAA+AGG | - | chr1_2:4941146-4941165 | Msa0050930:CDS | 25.0% |
| ! | AAACCTTTACACTGTATTAT+TGG | - | chr1_2:4941543-4941562 | Msa0050930:intron | 25.0% |
| ! | AATCCAATAATACAGTGTAA+AGG | + | chr1_2:4941549-4941568 | None:intergenic | 25.0% |
| ! | CTTAACAACTTTAAGCTTAT+GGG | - | chr1_2:4941614-4941633 | Msa0050930:CDS | 25.0% |
| ! | GTAATCAGAAGTTTAGTAAA+TGG | + | chr1_2:4941703-4941722 | None:intergenic | 25.0% |
| ! | ATATTACAATAGTGTGTGAA+TGG | - | chr1_2:4941846-4941865 | Msa0050930:CDS | 25.0% |
| !!! | ACAGTTGATTTTAACACATT+TGG | - | chr1_2:4941947-4941966 | Msa0050930:intron | 25.0% |
| ! | CTACAAGTTATAATCAATTC+TGG | + | chr1_2:4942000-4942019 | None:intergenic | 25.0% |
| ! | TTGAGGTTAAAAGTCAATTA+TGG | + | chr1_2:4942045-4942064 | None:intergenic | 25.0% |
| ! | AACCTCAAATTAATTGTTAG+TGG | - | chr1_2:4942057-4942076 | Msa0050930:intron | 25.0% |
| ! | AAAACATTCATAATTGTACC+TGG | + | chr1_2:4942642-4942661 | None:intergenic | 25.0% |
| ! | ACTATTTAATTCATATCAGG+TGG | - | chr1_2:4942876-4942895 | Msa0050930:CDS | 25.0% |
| ! | GATAAATCATCATAAGTTGT+AGG | + | chr1_2:4943327-4943346 | None:intergenic | 25.0% |
| ! | TTATCAGAGTTGAATAACTT+TGG | - | chr1_2:4943342-4943361 | Msa0050930:five_prime_UTR | 25.0% |
| ! | ATCAGAATTCATCATATTCA+TGG | - | chr1_2:4943798-4943817 | Msa0050930:intron | 25.0% |
| !!! | TTCTAGTTTCTACTTTTTTG+AGG | + | chr1_2:4943968-4943987 | None:intergenic | 25.0% |
| !! | GATAGTGTTTTGTAATATTG+TGG | - | chr1_2:4944105-4944124 | Msa0050930:intron | 25.0% |
| !! | TAGTGTTTTGTAATATTGTG+GGG | - | chr1_2:4944107-4944126 | Msa0050930:intron | 25.0% |
| ! | CATCATCAATATCATGAATA+AGG | - | chr1_2:4944188-4944207 | Msa0050930:five_prime_UTR | 25.0% |
| AAATAGTACCTTTCAGGATA+GGG | + | chr1_2:4939954-4939973 | None:intergenic | 30.0% | |
| AAAGAGAAATAGTACCTTTC+AGG | + | chr1_2:4939960-4939979 | None:intergenic | 30.0% | |
| TACACAAACTCTGTTTCAAA+GGG | - | chr1_2:4940134-4940153 | Msa0050930:three_prime_UTR | 30.0% | |
| GTGACTTCAAAAACTACAAT+AGG | - | chr1_2:4940376-4940395 | Msa0050930:three_prime_UTR | 30.0% | |
| ! | TAATAGCATTTTCCTCACTT+TGG | - | chr1_2:4940587-4940606 | Msa0050930:CDS | 30.0% |
| !! | AGATTAGCTTTAAAGCAACA+AGG | - | chr1_2:4940623-4940642 | Msa0050930:CDS | 30.0% |
| !! | CAAGTTGATTCCATTGTTTA+AGG | - | chr1_2:4940679-4940698 | Msa0050930:CDS | 30.0% |
| ACAGATTCACTGTAATTATG+AGG | + | chr1_2:4940818-4940837 | None:intergenic | 30.0% | |
| CATAATTACAGTGAATCTGT+AGG | - | chr1_2:4940818-4940837 | Msa0050930:CDS | 30.0% | |
| GTTGAAGTTTATGACATCTA+TGG | - | chr1_2:4940853-4940872 | Msa0050930:CDS | 30.0% | |
| AATATGCTGTCTATTGATCA+GGG | - | chr1_2:4940887-4940906 | Msa0050930:CDS | 30.0% | |
| TATAATCCACATCCTTCAAT+AGG | - | chr1_2:4941178-4941197 | Msa0050930:intron | 30.0% | |
| CTTAAGGTAATGAGAGTTAA+GGG | + | chr1_2:4941263-4941282 | None:intergenic | 30.0% | |
| TGAAATAGTTAATGTCCGAA+AGG | - | chr1_2:4941303-4941322 | Msa0050930:intron | 30.0% | |
| GAAATAGTTAATGTCCGAAA+GGG | - | chr1_2:4941304-4941323 | Msa0050930:intron | 30.0% | |
| !!! | ACTTTGTTGTTTTTCCAATC+CGG | + | chr1_2:4941341-4941360 | None:intergenic | 30.0% |
| ! | AGATTTTCCATCAGAATCTT+TGG | + | chr1_2:4941389-4941408 | None:intergenic | 30.0% |
| TGTTTGCATTAGAACCATTA+GGG | + | chr1_2:4941441-4941460 | None:intergenic | 30.0% | |
| TTGTTTGCATTAGAACCATT+AGG | + | chr1_2:4941442-4941461 | None:intergenic | 30.0% | |
| ! | AACAAAACTTTTGTCCATGT+TGG | - | chr1_2:4941513-4941532 | Msa0050930:intron | 30.0% |
| CACTGTATTATTGGATTACA+AGG | - | chr1_2:4941552-4941571 | Msa0050930:intron | 30.0% | |
| GCTTAACAACTTTAAGCTTA+TGG | - | chr1_2:4941613-4941632 | Msa0050930:CDS | 30.0% | |
| TAGTATGTAACAAACGATTG+AGG | - | chr1_2:4941763-4941782 | Msa0050930:CDS | 30.0% | |
| ACGATTCAACCAAATAGAAA+GGG | + | chr1_2:4941804-4941823 | None:intergenic | 30.0% | |
| ATTTATCTTACCTTTGCATG+AGG | - | chr1_2:4941903-4941922 | Msa0050930:intron | 30.0% | |
| ! | ATCAATTTTACCTCATGCAA+AGG | + | chr1_2:4941916-4941935 | None:intergenic | 30.0% |
| ! | TGAGGTAAAATTGATTCTGA+AGG | - | chr1_2:4941921-4941940 | Msa0050930:intron | 30.0% |
| CAAGTTATAATCAATTCTGG+AGG | + | chr1_2:4941997-4942016 | None:intergenic | 30.0% | |
| AGGTTAAAAGTCAATTATGG+AGG | + | chr1_2:4942042-4942061 | None:intergenic | 30.0% | |
| ! | CACCACTAACAATTAATTTG+AGG | + | chr1_2:4942062-4942081 | None:intergenic | 30.0% |
| TCCTTTGAGTCAATTGAATT+TGG | + | chr1_2:4942284-4942303 | None:intergenic | 30.0% | |
| ATTTGGTATTAGTTATCCGA+AGG | - | chr1_2:4942570-4942589 | Msa0050930:CDS | 30.0% | |
| ! | ATGATTTTCTCTGAATCCTT+CGG | + | chr1_2:4942589-4942608 | None:intergenic | 30.0% |
| GTATTCTGATTAAGATCCAA+GGG | - | chr1_2:4942684-4942703 | Msa0050930:CDS | 30.0% | |
| TAACATACACTTTAAGTGTC+AGG | + | chr1_2:4942718-4942737 | None:intergenic | 30.0% | |
| ! | TAAGTCATATTCCTGTCTTT+TGG | - | chr1_2:4942837-4942856 | Msa0050930:CDS | 30.0% |
| ! | GAATTGGTTTATTAATGCGA+GGG | - | chr1_2:4942900-4942919 | Msa0050930:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr1_2:4942949-4942968 | Msa0050930:CDS | 30.0% | |
| GACAAGTTAATGAATGTTGA+TGG | - | chr1_2:4943072-4943091 | Msa0050930:CDS | 30.0% | |
| !! | AATGTGATGGATTCTAGAAT+TGG | - | chr1_2:4943195-4943214 | Msa0050930:CDS | 30.0% |
| !! | ATGTGATGGATTCTAGAATT+GGG | - | chr1_2:4943196-4943215 | Msa0050930:CDS | 30.0% |
| TGTTCATGTTAAACCTTTGT+TGG | + | chr1_2:4943236-4943255 | None:intergenic | 30.0% | |
| ! | CCTTTTATTGATGTCATCAT+TGG | + | chr1_2:4943433-4943452 | None:intergenic | 30.0% |
| CCAATGATGACATCAATAAA+AGG | - | chr1_2:4943430-4943449 | Msa0050930:five_prime_UTR | 30.0% | |
| ! | TAAAAGGCGTAATCAAACAA+TGG | - | chr1_2:4943446-4943465 | Msa0050930:intron | 30.0% |
| TAGTCTAACAAATCAGTATC+TGG | + | chr1_2:4943480-4943499 | None:intergenic | 30.0% | |
| ! | TTTTGATGTGTTTGGAAACA+CGG | + | chr1_2:4943893-4943912 | None:intergenic | 30.0% |
| TCCAAACACATCAAAATCTT+TGG | - | chr1_2:4943897-4943916 | Msa0050930:intron | 30.0% | |
| !! | TCCAAAGATTTTGATGTGTT+TGG | + | chr1_2:4943901-4943920 | None:intergenic | 30.0% |
| !! | TATAGCTTTATGATTCACTG+TGG | + | chr1_2:4944042-4944061 | None:intergenic | 30.0% |
| AAGTGAGAAGAAGGAAGAAA+GGG | + | chr1_2:4939906-4939925 | None:intergenic | 35.0% | |
| GAAATAGTACCTTTCAGGAT+AGG | + | chr1_2:4939955-4939974 | None:intergenic | 35.0% | |
| ! | AAAAAAGATGGTGGTGATGA+TGG | - | chr1_2:4940087-4940106 | Msa0050930:three_prime_UTR | 35.0% |
| GTACACAAACTCTGTTTCAA+AGG | - | chr1_2:4940133-4940152 | Msa0050930:three_prime_UTR | 35.0% | |
| AAACACACACAGAGACAAAA+TGG | + | chr1_2:4940480-4940499 | None:intergenic | 35.0% | |
| GGATACATTGTAAGCAAGAT+TGG | + | chr1_2:4940737-4940756 | None:intergenic | 35.0% | |
| GAATATGCTGTCTATTGATC+AGG | - | chr1_2:4940886-4940905 | Msa0050930:CDS | 35.0% | |
| ATATGCTGTCTATTGATCAG+GGG | - | chr1_2:4940888-4940907 | Msa0050930:CDS | 35.0% | |
| GGATACTGATATTGAAAGGA+AGG | + | chr1_2:4941019-4941038 | None:intergenic | 35.0% | |
| TCCTTTCAATATCAGTATCC+CGG | - | chr1_2:4941019-4941038 | Msa0050930:CDS | 35.0% | |
| TCAAAACAATGTCAAAAGGG+AGG | - | chr1_2:4941150-4941169 | Msa0050930:CDS | 35.0% | |
| CAAAACAATGTCAAAAGGGA+GGG | - | chr1_2:4941151-4941170 | Msa0050930:CDS | 35.0% | |
| CTTCAATAGGCCTTAATGAA+GGG | - | chr1_2:4941191-4941210 | Msa0050930:intron | 35.0% | |
| CCTTAAGGTAATGAGAGTTA+AGG | + | chr1_2:4941264-4941283 | None:intergenic | 35.0% | |
| CCTTAACTCTCATTACCTTA+AGG | - | chr1_2:4941261-4941280 | Msa0050930:intron | 35.0% | |
| CAATCTATGCAAGTATCTTC+AGG | - | chr1_2:4941415-4941434 | Msa0050930:intron | 35.0% | |
| AGCAGTGAATTGGTTACAAA+AGG | - | chr1_2:4941739-4941758 | Msa0050930:CDS | 35.0% | |
| ACATATTGCCCCTTTCTATT+TGG | - | chr1_2:4941792-4941811 | Msa0050930:CDS | 35.0% | |
| CGATTCAACCAAATAGAAAG+GGG | + | chr1_2:4941803-4941822 | None:intergenic | 35.0% | |
| GACGATTCAACCAAATAGAA+AGG | + | chr1_2:4941805-4941824 | None:intergenic | 35.0% | |
| ! | GCATTTGATGACAGTATTGT+CGG | + | chr1_2:4942143-4942162 | None:intergenic | 35.0% |
| ! | TGTTGTGTCATCTTTTGACA+TGG | - | chr1_2:4942167-4942186 | Msa0050930:intron | 35.0% |
| ! | GCCAAATTCAATTGACTCAA+AGG | - | chr1_2:4942280-4942299 | Msa0050930:intron | 35.0% |
| GGATTCAGAGAAAATCATGT+TGG | - | chr1_2:4942591-4942610 | Msa0050930:CDS | 35.0% | |
| TCATAATTGTACCTGGTTTC+TGG | + | chr1_2:4942635-4942654 | None:intergenic | 35.0% | |
| CGTATTCTGATTAAGATCCA+AGG | - | chr1_2:4942683-4942702 | Msa0050930:CDS | 35.0% | |
| ! | CGAATTGGTTTATTAATGCG+AGG | - | chr1_2:4942899-4942918 | Msa0050930:CDS | 35.0% |
| TTGTACATTTCTTCGACCAT+TGG | + | chr1_2:4942940-4942959 | None:intergenic | 35.0% | |
| ! | CAAAGAAGAGTTTGGTGATT+CGG | - | chr1_2:4942957-4942976 | Msa0050930:CDS | 35.0% |
| AACAACAAGGTCAAATTGCA+GGG | - | chr1_2:4943100-4943119 | Msa0050930:CDS | 35.0% | |
| GGATTCAAAGTAGTGATCAT+TGG | - | chr1_2:4943169-4943188 | Msa0050930:CDS | 35.0% | |
| TGATCATTGGACAAATGTGA+TGG | - | chr1_2:4943182-4943201 | Msa0050930:CDS | 35.0% | |
| ! | TCTAGAATTGGGAAAATGCA+AGG | - | chr1_2:4943207-4943226 | Msa0050930:CDS | 35.0% |
| ! | GAGATAGGTGGATTTGAATA+AGG | + | chr1_2:4943264-4943283 | None:intergenic | 35.0% |
| !! | TTTTGGTTGATTGAGATAGG+TGG | + | chr1_2:4943276-4943295 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTGATTGAGAT+AGG | + | chr1_2:4943279-4943298 | None:intergenic | 35.0% |
| CCTATCTCAATCAACCAAAA+TGG | - | chr1_2:4943276-4943295 | Msa0050930:CDS | 35.0% | |
| TCAATCAACCAAAATGGTGA+TGG | - | chr1_2:4943282-4943301 | Msa0050930:CDS | 35.0% | |
| ! | GAGTTGAATAACTTTGGTGT+TGG | - | chr1_2:4943348-4943367 | Msa0050930:five_prime_UTR | 35.0% |
| !! | TTGAATAACTTTGGTGTTGG+TGG | - | chr1_2:4943351-4943370 | Msa0050930:five_prime_UTR | 35.0% |
| ACTCTAATGCAAGTGAAACA+TGG | + | chr1_2:4943377-4943396 | None:intergenic | 35.0% | |
| TTTCACTTGCATTAGAGTTG+AGG | - | chr1_2:4943379-4943398 | Msa0050930:five_prime_UTR | 35.0% | |
| !! | AACTCTGAAAGTGATGGATT+TGG | - | chr1_2:4943402-4943421 | Msa0050930:five_prime_UTR | 35.0% |
| TGAATTGAAAGAACCGTGTT+TGG | - | chr1_2:4943570-4943589 | Msa0050930:intron | 35.0% | |
| ! | ACCTACGTGTATATTTTGCA+CGG | + | chr1_2:4944078-4944097 | None:intergenic | 35.0% |
| TTGTAATATTGTGGGGTGAT+TGG | - | chr1_2:4944114-4944133 | Msa0050930:five_prime_UTR | 35.0% | |
| ! | GTATGTGCAGCAATTTTGTA+AGG | - | chr1_2:4944143-4944162 | Msa0050930:five_prime_UTR | 35.0% |
| AAAGGGAAGAAGAGGTTAAG+AGG | + | chr1_2:4939889-4939908 | None:intergenic | 40.0% | |
| GAAGTGAGAAGAAGGAAGAA+AGG | + | chr1_2:4939907-4939926 | None:intergenic | 40.0% | |
| GAAAAGGTGAAGTGAGAAGA+AGG | + | chr1_2:4939915-4939934 | None:intergenic | 40.0% | |
| CTTTCTGCTCCCTTAAACAA+TGG | + | chr1_2:4940692-4940711 | None:intergenic | 40.0% | |
| TGCGCAAATCTCAAACTTGA+AGG | - | chr1_2:4941066-4941085 | Msa0050930:CDS | 40.0% | |
| GCGCAAATCTCAAACTTGAA+GGG | - | chr1_2:4941067-4941086 | Msa0050930:CDS | 40.0% | |
| CGCAAATCTCAAACTTGAAG+GGG | - | chr1_2:4941068-4941087 | Msa0050930:CDS | 40.0% | |
| TGCATCTCTTAAGGATGATG+AGG | - | chr1_2:4941093-4941112 | Msa0050930:CDS | 40.0% | |
| TTAAGGCCTATTGAAGGATG+TGG | + | chr1_2:4941187-4941206 | None:intergenic | 40.0% | |
| CCTTCATTAAGGCCTATTGA+AGG | + | chr1_2:4941193-4941212 | None:intergenic | 40.0% | |
| CCTTCAATAGGCCTTAATGA+AGG | - | chr1_2:4941190-4941209 | Msa0050930:intron | 40.0% | |
| GATCAGATTGCCCTTCATTA+AGG | + | chr1_2:4941204-4941223 | None:intergenic | 40.0% | |
| !! | TGAGAGTTAAGGGCATTGTT+CGG | + | chr1_2:4941253-4941272 | None:intergenic | 40.0% |
| ! | CAACAAAGTTTTCGTGATGC+TGG | - | chr1_2:4941352-4941371 | Msa0050930:intron | 40.0% |
| GATGCTTCCAAAGATTCTGA+TGG | - | chr1_2:4941379-4941398 | Msa0050930:intron | 40.0% | |
| ! | ACTTTTGTCCATGTTGGATG+AGG | - | chr1_2:4941519-4941538 | Msa0050930:intron | 40.0% |
| AAGGTTTACCTCATCCAACA+TGG | + | chr1_2:4941530-4941549 | None:intergenic | 40.0% | |
| CAGTAGCAATAGCAGTGAAT+TGG | - | chr1_2:4941729-4941748 | Msa0050930:CDS | 40.0% | |
| ! | TCATCTTTTGACATGGTTGC+TGG | - | chr1_2:4942174-4942193 | Msa0050930:intron | 40.0% |
| TGTTTGCGTGATGCTATTAG+CGG | - | chr1_2:4942258-4942277 | Msa0050930:intron | 40.0% | |
| TTGGTGTAATGAGACAAGCT+TGG | - | chr1_2:4942382-4942401 | Msa0050930:intron | 40.0% | |
| !! | AGTATTGACACAGAGCTTTC+AGG | + | chr1_2:4942426-4942445 | None:intergenic | 40.0% |
| AATGAGTATAGGGGAACCTA+CGG | + | chr1_2:4942480-4942499 | None:intergenic | 40.0% | |
| ATCATGTTGGCAAGACAAAC+AGG | - | chr1_2:4942604-4942623 | Msa0050930:CDS | 40.0% | |
| !! | GTGTCAGGTTATTTTACCCT+TGG | + | chr1_2:4942703-4942722 | None:intergenic | 40.0% |
| ATTCATATCAGGTGGCGAAT+TGG | - | chr1_2:4942884-4942903 | Msa0050930:CDS | 40.0% | |
| TTCGAGTGTGGGATGATAAA+AGG | - | chr1_2:4943037-4943056 | Msa0050930:CDS | 40.0% | |
| TCGAGTGTGGGATGATAAAA+GGG | - | chr1_2:4943038-4943057 | Msa0050930:CDS | 40.0% | |
| GAACAACAAGGTCAAATTGC+AGG | - | chr1_2:4943099-4943118 | Msa0050930:CDS | 40.0% | |
| TCTATCCAATTCTGTGGTTG+AGG | + | chr1_2:4943148-4943167 | None:intergenic | 40.0% | |
| TCAACCACAGAATTGGATAG+AGG | - | chr1_2:4943147-4943166 | Msa0050930:CDS | 40.0% | |
| CAACCACAGAATTGGATAGA+GGG | - | chr1_2:4943148-4943167 | Msa0050930:CDS | 40.0% | |
| AATCCCTCTATCCAATTCTG+TGG | + | chr1_2:4943154-4943173 | None:intergenic | 40.0% | |
| AAATGCAAGGTGACCAACAA+AGG | - | chr1_2:4943220-4943239 | Msa0050930:CDS | 40.0% | |
| ! | TTATGCAGCCATCACCATTT+TGG | + | chr1_2:4943293-4943312 | None:intergenic | 40.0% |
| !! | AAATGGTGATGGCTGCATAA+TGG | - | chr1_2:4943293-4943312 | Msa0050930:CDS | 40.0% |
| ! | TTGAGGAACTCTGAAAGTGA+TGG | - | chr1_2:4943396-4943415 | Msa0050930:five_prime_UTR | 40.0% |
| GGAAAGCAACAACACAAGTT+TGG | - | chr1_2:4943516-4943535 | Msa0050930:intron | 40.0% | |
| CAAACTCGTGCAACAAATGT+GGG | + | chr1_2:4943545-4943564 | None:intergenic | 40.0% | |
| ACAAACTCGTGCAACAAATG+TGG | + | chr1_2:4943546-4943565 | None:intergenic | 40.0% | |
| TAACGCAGTTACCACATCAA+CGG | - | chr1_2:4943632-4943651 | Msa0050930:intron | 40.0% | |
| ! | ATGCATGAGATTGTTGACTG+TGG | - | chr1_2:4943772-4943791 | Msa0050930:intron | 40.0% |
| !! | GTAGCTTTGAGATAGATGTG+CGG | + | chr1_2:4943829-4943848 | None:intergenic | 40.0% |
| ACCGTGCAAAATATACACGT+AGG | - | chr1_2:4944074-4944093 | Msa0050930:intron | 40.0% | |
| CAATGCGTTCACATTGTACT+AGG | + | chr1_2:4944238-4944257 | None:intergenic | 40.0% | |
| AGACAAGAATCCACAGTGTG+GGG | + | chr1_2:4939842-4939861 | None:intergenic | 45.0% | |
| GAGACAAGAATCCACAGTGT+GGG | + | chr1_2:4939843-4939862 | None:intergenic | 45.0% | |
| AGAGACAAGAATCCACAGTG+TGG | + | chr1_2:4939844-4939863 | None:intergenic | 45.0% | |
| GAAGGAAGAAAGGGAAGAAG+AGG | + | chr1_2:4939897-4939916 | None:intergenic | 45.0% | |
| ! | AGAGACAAAATGGAGGTACG+AGG | + | chr1_2:4940470-4940489 | None:intergenic | 45.0% |
| CACACACAGAGACAAAATGG+AGG | + | chr1_2:4940477-4940496 | None:intergenic | 45.0% | |
| ! | TCCGAACCAAGCGTTTTCTT+CGG | - | chr1_2:4940754-4940773 | Msa0050930:CDS | 45.0% |
| AAGATCCCGAAGAAAACGCT+TGG | + | chr1_2:4940763-4940782 | None:intergenic | 45.0% | |
| ! | GTTTTCTTCGGGATCTTACG+CGG | - | chr1_2:4940766-4940785 | Msa0050930:CDS | 45.0% |
| TCTTACGCGGAGATGATATC+TGG | - | chr1_2:4940779-4940798 | Msa0050930:CDS | 45.0% | |
| CTTACGCGGAGATGATATCT+GGG | - | chr1_2:4940780-4940799 | Msa0050930:CDS | 45.0% | |
| GAGCAAAACGTACAATGCCA+GGG | - | chr1_2:4940965-4940984 | Msa0050930:CDS | 45.0% | |
| GCCGGGATACTGATATTGAA+AGG | + | chr1_2:4941023-4941042 | None:intergenic | 45.0% | |
| GATTTGCGCATTCATTAGCG+AGG | + | chr1_2:4941056-4941075 | None:intergenic | 45.0% | |
| TGCATGGCATCTTTGTCTTC+TGG | - | chr1_2:4941121-4941140 | Msa0050930:CDS | 45.0% | |
| ATGGCATCTTTGTCTTCTGG+AGG | - | chr1_2:4941124-4941143 | Msa0050930:CDS | 45.0% | |
| GAATAACTGCTGATCCTTGC+AGG | + | chr1_2:4941231-4941250 | None:intergenic | 45.0% | |
| TCATTACCTTAAGGCAGCAC+AGG | - | chr1_2:4941270-4941289 | Msa0050930:intron | 45.0% | |
| ! | CGGTTTGTTTCAAGCCCTTT+CGG | + | chr1_2:4941321-4941340 | None:intergenic | 45.0% |
| CGAAAGGGCTTGAAACAAAC+CGG | - | chr1_2:4941319-4941338 | Msa0050930:intron | 45.0% | |
| CAAGTATCTTCAGGCCCTAA+TGG | - | chr1_2:4941424-4941443 | Msa0050930:intron | 45.0% | |
| AATAAATGCTGTCGTTCCGC+AGG | + | chr1_2:4941484-4941503 | None:intergenic | 45.0% | |
| TGCGGAACGACAGCATTTAT+TGG | - | chr1_2:4941483-4941502 | Msa0050930:intron | 45.0% | |
| ! | TTTGACATGGTTGCTGGTTG+CGG | - | chr1_2:4942180-4942199 | Msa0050930:intron | 45.0% |
| AGCAAGAGCAGTGTATGGTT+CGG | + | chr1_2:4942211-4942230 | None:intergenic | 45.0% | |
| ! | CAATTGACTCAAAGGAGCCT+TGG | - | chr1_2:4942288-4942307 | Msa0050930:intron | 45.0% |
| TAAGCTGCTGATCGACATAG+CGG | + | chr1_2:4942338-4942357 | None:intergenic | 45.0% | |
| CAAAAAGCTCTTCAGCAGCT+TGG | - | chr1_2:4942363-4942382 | Msa0050930:intron | 45.0% | |
| AATATGACTTAGTGCGCGTC+TGG | + | chr1_2:4942828-4942847 | None:intergenic | 45.0% | |
| GCAAGTAGCAACCAAAAGAC+AGG | + | chr1_2:4942851-4942870 | None:intergenic | 45.0% | |
| TCATCGTCTCTCAGAGCTTT+CGG | + | chr1_2:4943015-4943034 | None:intergenic | 45.0% | |
| AGACGATGATGTTCGAGTGT+GGG | - | chr1_2:4943026-4943045 | Msa0050930:CDS | 45.0% | |
| !! | GTTGATGGTGCTGAACAACA+AGG | - | chr1_2:4943087-4943106 | Msa0050930:CDS | 45.0% |
| ATCCTCCTCAACCACAGAAT+TGG | - | chr1_2:4943140-4943159 | Msa0050930:CDS | 45.0% | |
| ATCCAATTCTGTGGTTGAGG+AGG | + | chr1_2:4943145-4943164 | None:intergenic | 45.0% | |
| GACTATCACTTCACAGACTC+TGG | - | chr1_2:4943495-4943514 | Msa0050930:intron | 45.0% | |
| AAAGAACCGTGTTTGGAGAG+CGG | - | chr1_2:4943577-4943596 | Msa0050930:intron | 45.0% | |
| ATATGTCCGCTCTCCAAACA+CGG | + | chr1_2:4943586-4943605 | None:intergenic | 45.0% | |
| GGTAACTGCGTTAATGCATG+AGG | + | chr1_2:4943625-4943644 | None:intergenic | 45.0% | |
| GTTACCACATCAACGGTTGT+TGG | - | chr1_2:4943639-4943658 | Msa0050930:intron | 45.0% | |
| ATCATCCGATCCTGATCCAA+CGG | - | chr1_2:4943726-4943745 | Msa0050930:intron | 45.0% | |
| ATTGACCGTTGGATCAGGAT+CGG | + | chr1_2:4943734-4943753 | None:intergenic | 45.0% | |
| ACAACATTGACCGTTGGATC+AGG | + | chr1_2:4943739-4943758 | None:intergenic | 45.0% | |
| GTCATCACAACATTGACCGT+TGG | + | chr1_2:4943745-4943764 | None:intergenic | 45.0% | |
| TGATGTGTTTGGAAACACGG+TGG | + | chr1_2:4943890-4943909 | None:intergenic | 45.0% | |
| ACACAAAGCAACAGCAGCAT+AGG | + | chr1_2:4943998-4944017 | None:intergenic | 45.0% | |
| AAGAATCCACAGTGTGGGGA+AGG | + | chr1_2:4939838-4939857 | None:intergenic | 50.0% | |
| AGAGAGGAAGAGGAGGGAAA+AGG | + | chr1_2:4939931-4939950 | None:intergenic | 50.0% | |
| ATAGGGAGAGAGGAAGAGGA+GGG | + | chr1_2:4939937-4939956 | None:intergenic | 50.0% | |
| TCCTCTCTCCCTATCCTGAA+AGG | - | chr1_2:4939943-4939962 | Msa0050930:three_prime_UTR | 50.0% | |
| ACCTTTCAGGATAGGGAGAG+AGG | + | chr1_2:4939947-4939966 | None:intergenic | 50.0% | |
| CCCGAAGAAAACGCTTGGTT+CGG | + | chr1_2:4940758-4940777 | None:intergenic | 50.0% | |
| ! | CCGAACCAAGCGTTTTCTTC+GGG | - | chr1_2:4940755-4940774 | Msa0050930:CDS | 50.0% |
| TGGATCGCTCGTACTAGCAT+TGG | + | chr1_2:4940918-4940937 | None:intergenic | 50.0% | |
| ATGCTAGTACGAGCGATCCA+AGG | - | chr1_2:4940918-4940937 | Msa0050930:CDS | 50.0% | |
| AGCGATCCAAGGACACAGTT+CGG | - | chr1_2:4940929-4940948 | Msa0050930:CDS | 50.0% | |
| CGAGCAAAACGTACAATGCC+AGG | - | chr1_2:4940964-4940983 | Msa0050930:CDS | 50.0% | |
| TTGTCCCAAGGCTAAGAGAC+AGG | + | chr1_2:4940991-4941010 | None:intergenic | 50.0% | |
| !! | AGGAAGGCATCATTGTCCCA+AGG | + | chr1_2:4941003-4941022 | None:intergenic | 50.0% |
| TAGCGAGGTGAAACTGTTGC+CGG | + | chr1_2:4941041-4941060 | None:intergenic | 50.0% | |
| GAAGGGGTCTGCATCTCTTA+AGG | - | chr1_2:4941084-4941103 | Msa0050930:CDS | 50.0% | |
| GAAGTTCCTGTGCTGCCTTA+AGG | + | chr1_2:4941279-4941298 | None:intergenic | 50.0% | |
| GGGCTTGAAACAAACCGGAT+TGG | - | chr1_2:4941324-4941343 | Msa0050930:intron | 50.0% | |
| TTCATGTGAGCTATCGCCTG+CGG | - | chr1_2:4941465-4941484 | Msa0050930:CDS | 50.0% | |
| CGCAAAGCAAGAGCAGTGTA+TGG | + | chr1_2:4942216-4942235 | None:intergenic | 50.0% | |
| ! | ACAGCGAAAGTGACGGGAAA+TGG | + | chr1_2:4942241-4942260 | None:intergenic | 50.0% |
| ACGCAAACAGCGAAAGTGAC+GGG | + | chr1_2:4942247-4942266 | None:intergenic | 50.0% | |
| CACGCAAACAGCGAAAGTGA+CGG | + | chr1_2:4942248-4942267 | None:intergenic | 50.0% | |
| TCAAAGGAGCCTTGGAGAAC+AGG | - | chr1_2:4942296-4942315 | Msa0050930:intron | 50.0% | |
| GTATTCCCTCCTGTTCTCCA+AGG | + | chr1_2:4942308-4942327 | None:intergenic | 50.0% | |
| CTTTCAGGAAGTCCTCTCTG+AGG | + | chr1_2:4942411-4942430 | None:intergenic | 50.0% | |
| CTGTGTCAATACTCCGTGCA+TGG | - | chr1_2:4942433-4942452 | Msa0050930:intron | 50.0% | |
| AATGCTCGAAGAGCCATGCA+CGG | + | chr1_2:4942449-4942468 | None:intergenic | 50.0% | |
| CGAGCATTTCCTTCATCCGT+AGG | - | chr1_2:4942461-4942480 | Msa0050930:intron | 50.0% | |
| ATAGGGGAACCTACGGATGA+AGG | + | chr1_2:4942473-4942492 | None:intergenic | 50.0% | |
| AACAGGCTTGACCAGAAACC+AGG | - | chr1_2:4942621-4942640 | Msa0050930:CDS | 50.0% | |
| ! | TTAATGCGAGGGTGCGTCTT+TGG | - | chr1_2:4942911-4942930 | Msa0050930:CDS | 50.0% |
| ! | GGTGCGTCTTTGGAAACCAA+TGG | - | chr1_2:4942921-4942940 | Msa0050930:CDS | 50.0% |
| GAGACGATGATGTTCGAGTG+TGG | - | chr1_2:4943025-4943044 | Msa0050930:CDS | 50.0% | |
| CGATCCAACAACCGTTGATG+TGG | + | chr1_2:4943646-4943665 | None:intergenic | 50.0% | |
| GCTATATCAGGACGCACGAT+CGG | + | chr1_2:4943868-4943887 | None:intergenic | 50.0% | |
| GGAAACACGGTGGCTATATC+AGG | + | chr1_2:4943880-4943899 | None:intergenic | 50.0% | |
| TGTGGGGAAGGTCAGACAAG+TGG | + | chr1_2:4939826-4939845 | None:intergenic | 55.0% | |
| GATAGGGAGAGAGGAAGAGG+AGG | + | chr1_2:4939938-4939957 | None:intergenic | 55.0% | |
| CAGGATAGGGAGAGAGGAAG+AGG | + | chr1_2:4939941-4939960 | None:intergenic | 55.0% | |
| ACGAGTCCGAACTGTGTCCT+TGG | + | chr1_2:4940938-4940957 | None:intergenic | 55.0% | |
| ! | AGGGCCTGTCTCTTAGCCTT+GGG | - | chr1_2:4940984-4941003 | Msa0050930:CDS | 55.0% |
| AGCGAGGTGAAACTGTTGCC+GGG | + | chr1_2:4941040-4941059 | None:intergenic | 55.0% | |
| GGATGATGAGGCTGAGTGCA+TGG | - | chr1_2:4941105-4941124 | Msa0050930:CDS | 55.0% | |
| CAATCTGATCCGTGCCTGCA+AGG | - | chr1_2:4941214-4941233 | Msa0050930:intron | 55.0% | |
| ACTGCTGATCCTTGCAGGCA+CGG | + | chr1_2:4941226-4941245 | None:intergenic | 55.0% | |
| AAGGAGCCTTGGAGAACAGG+AGG | - | chr1_2:4942299-4942318 | Msa0050930:intron | 55.0% | |
| AGGAGCCTTGGAGAACAGGA+GGG | - | chr1_2:4942300-4942319 | Msa0050930:intron | 55.0% | |
| ! | TGATCGACATAGCGGAGACG+AGG | + | chr1_2:4942330-4942349 | None:intergenic | 55.0% |
| CAAGCTTGGAGACCTCAGAG+AGG | - | chr1_2:4942396-4942415 | Msa0050930:intron | 55.0% | |
| GTCTGACCTTCCCCACACTG+TGG | - | chr1_2:4939829-4939848 | Msa0050930:three_prime_UTR | 60.0% | |
| CAAGGCTAAGAGACAGGCCC+TGG | + | chr1_2:4940985-4941004 | None:intergenic | 60.0% | |
| CAGGGCCTGTCTCTTAGCCT+TGG | - | chr1_2:4940983-4941002 | Msa0050930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4939812 | 4944265 | 4939812 | ID=Msa0050930;Name=Msa0050930 |
| chr1_2 | mRNA | 4939812 | 4944265 | 4939812 | ID=Msa0050930-mRNA-1;Parent=Msa0050930;Name=Msa0050930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=277|0.75|0.8|1|0.75|0.8|5|693|614 |
| chr1_2 | exon | 4939812 | 4941182 | 4939812 | ID=Msa0050930-mRNA-1:exon:1353;Parent=Msa0050930-mRNA-1 |
| chr1_2 | exon | 4941435 | 4941495 | 4941435 | ID=Msa0050930-mRNA-1:exon:1352;Parent=Msa0050930-mRNA-1 |
| chr1_2 | exon | 4941599 | 4941912 | 4941599 | ID=Msa0050930-mRNA-1:exon:1351;Parent=Msa0050930-mRNA-1 |
| chr1_2 | exon | 4942537 | 4943452 | 4942537 | ID=Msa0050930-mRNA-1:exon:1350;Parent=Msa0050930-mRNA-1 |
| chr1_2 | exon | 4944113 | 4944265 | 4944113 | ID=Msa0050930-mRNA-1:exon:1349;Parent=Msa0050930-mRNA-1 |
| chr1_2 | five_prime_UTR | 4944113 | 4944265 | 4944113 | ID=Msa0050930-mRNA-1:five_prime_utr;Parent=Msa0050930-mRNA-1 |
| chr1_2 | five_prime_UTR | 4943329 | 4943452 | 4943329 | ID=Msa0050930-mRNA-1:five_prime_utr;Parent=Msa0050930-mRNA-1 |
| chr1_2 | CDS | 4942537 | 4943328 | 4942537 | ID=Msa0050930-mRNA-1:cds;Parent=Msa0050930-mRNA-1 |
| chr1_2 | CDS | 4941599 | 4941912 | 4941599 | ID=Msa0050930-mRNA-1:cds;Parent=Msa0050930-mRNA-1 |
| chr1_2 | CDS | 4941435 | 4941495 | 4941435 | ID=Msa0050930-mRNA-1:cds;Parent=Msa0050930-mRNA-1 |
| chr1_2 | CDS | 4940505 | 4941182 | 4940505 | ID=Msa0050930-mRNA-1:cds;Parent=Msa0050930-mRNA-1 |
| chr1_2 | three_prime_UTR | 4939812 | 4940504 | 4939812 | ID=Msa0050930-mRNA-1:three_prime_utr;Parent=Msa0050930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
