AlfalfaGEDB | Msa1123170

M. sativa cultivar zhongmu-4 / Msa1123170

KEGG: K16578
GO: GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904
PFAM: PF12348.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123170	XP_003625469.2	98.485	1188	11	2	7	1187	262	1449	0.0	2402

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123170	sp\|Q8RWY6\|CLASP_ARATH	71.814	1185	316	11	7	1183	262	1436	0.0	1651

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123170	G7KZK2	98.485	1188	11	2	7	1187	262	1449	0.0	2402

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0902040	Msa1123170	0.833698	4.593921e-56	-8.615850e-47
Msa0958490	Msa1123170	0.802678	5.005054e-49	-8.615850e-47
Msa1042400	Msa1123170	0.949712	7.291214e-108	-8.615850e-47
Msa1078230	Msa1123170	0.917290	6.355158e-86	-8.615850e-47
Msa1123170	Msa1123290	0.927925	5.946866e-92	-8.615850e-47
Msa1123170	Msa1123310	0.915858	3.568487e-85	-8.615850e-47
Msa1123170	Msa1213820	0.804898	1.732112e-49	-8.615850e-47
Msa1123170	Msa1259680	0.800144	1.653864e-48	-8.615850e-47
Msa1123170	Msa1296250	0.800287	1.547192e-48	-8.615850e-47
Msa1123170	Msa1437840	0.944084	3.728279e-103	-8.615850e-47

Showing 1 to 10 of 10 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123170	MtrunA17_Chr7g0262651	98.485	1188	11	2	7	1187	262	1449	0.0	2402
Msa1123170	MtrunA17_Chr1g0182801	79.461	1188	227	7	7	1187	262	1439	0.0	1903

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123170	AT2G20190.1	71.814	1185	316	11	7	1183	262	1436	0.0	1651

Showing 1 to 1 of 1 entries

Previous1Next

Find 263 sgRNAs with CRISPR-Local

Find 915 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAGGTAGAAACGA+GGG	0.646628	7_3:+73917265	None:intergenic
AAACATGCAATGAATGCAGA+AGG	0.618604	7_3:-73923528	Msa1123170:CDS
AAACTATATATATAGAACAA+AGG	0.638742	7_3:+73914698	None:intergenic
AAAGCTTCATGAAGAGATGC+TGG	0.514105	7_3:+73923990	None:intergenic
AAAGGCGGATCACGAGACGA+TGG	0.642101	7_3:+73924494	None:intergenic
AAAGGTAGTAACCGAAATGG+TGG	0.617234	7_3:-73924398	Msa1123170:CDS
AAAGTTTCCTTCTCTATAAG+GGG	0.566261	7_3:+73924157	None:intergenic
AACACCCAACAAACATTGAC+AGG	0.525730	7_3:+73914656	None:intergenic
AACATCTGCAATTGTTGCAA+TGG	0.551677	7_3:-73924888	Msa1123170:CDS
AACCAGCCGAATATCTTCCA+AGG	0.622634	7_3:+73923160	None:intergenic

Showing 1 to 10 of 263 entries

Previous1 2 3 4 5…27Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATCGGAGTATATCTTGATA+GGG	+	chr7_3:73914576-73914595	None:intergenic	30.0%
TTATCGGAGTATATCTTGAT+AGG	+	chr7_3:73914577-73914596	None:intergenic	30.0%
TATCAAGATATACTCCGATA+AGG	-	chr7_3:73914576-73914595	Msa1123170:three_prime_UTR	30.0%
TGACATAGTTTCATTGATGA+AGG	+	chr7_3:73914931-73914950	None:intergenic	30.0%
AGGAAAATAAAATGCTACCA+TGG	-	chr7_3:73914966-73914985	Msa1123170:CDS	30.0%
GGAAAATAAAATGCTACCAT+GGG	-	chr7_3:73914967-73914986	Msa1123170:CDS	30.0%
TATCTACTGACATAAACACT+TGG	-	chr7_3:73915016-73915035	Msa1123170:intron	30.0%
TCAAATAAACCAATCCAAAC+AGG	-	chr7_3:73915274-73915293	Msa1123170:intron	30.0%
AATAAGATGAAACCAGCTTA+TGG	+	chr7_3:73915349-73915368	None:intergenic	30.0%
TATATGTTAAACGCTTATGC+TGG	-	chr7_3:73915474-73915493	Msa1123170:intron	30.0%

Showing 1 to 10 of 915 entries

Previous1 2 3 4 5…92Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	73914520	73928438	73914520	ID=Msa1123170;Name=Msa1123170
chr7_3	mRNA	73914520	73928438	73914520	ID=Msa1123170-mRNA-1;Parent=Msa1123170;Name=Msa1123170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.73\|0.62\|1\|1\|1\|16\|319\|1187
chr7_3	exon	73914520	73915000	73914520	ID=Msa1123170-mRNA-1:exon:19569;Parent=Msa1123170-mRNA-1
chr7_3	exon	73917228	73917329	73917228	ID=Msa1123170-mRNA-1:exon:19568;Parent=Msa1123170-mRNA-1
chr7_3	exon	73918617	73918685	73918617	ID=Msa1123170-mRNA-1:exon:19567;Parent=Msa1123170-mRNA-1
chr7_3	exon	73918804	73918872	73918804	ID=Msa1123170-mRNA-1:exon:19566;Parent=Msa1123170-mRNA-1
chr7_3	exon	73918957	73919031	73918957	ID=Msa1123170-mRNA-1:exon:19565;Parent=Msa1123170-mRNA-1
chr7_3	exon	73919200	73919304	73919200	ID=Msa1123170-mRNA-1:exon:19564;Parent=Msa1123170-mRNA-1
chr7_3	exon	73921958	73922059	73921958	ID=Msa1123170-mRNA-1:exon:19563;Parent=Msa1123170-mRNA-1
chr7_3	exon	73922720	73924527	73922720	ID=Msa1123170-mRNA-1:exon:19562;Parent=Msa1123170-mRNA-1
chr7_3	exon	73924675	73925032	73924675	ID=Msa1123170-mRNA-1:exon:19561;Parent=Msa1123170-mRNA-1
chr7_3	exon	73925115	73925213	73925115	ID=Msa1123170-mRNA-1:exon:19560;Parent=Msa1123170-mRNA-1
chr7_3	exon	73926077	73926194	73926077	ID=Msa1123170-mRNA-1:exon:19559;Parent=Msa1123170-mRNA-1
chr7_3	exon	73926265	73926350	73926265	ID=Msa1123170-mRNA-1:exon:19558;Parent=Msa1123170-mRNA-1
chr7_3	exon	73926436	73926504	73926436	ID=Msa1123170-mRNA-1:exon:19557;Parent=Msa1123170-mRNA-1
chr7_3	exon	73926582	73926656	73926582	ID=Msa1123170-mRNA-1:exon:19556;Parent=Msa1123170-mRNA-1
chr7_3	exon	73926959	73927056	73926959	ID=Msa1123170-mRNA-1:exon:19555;Parent=Msa1123170-mRNA-1
chr7_3	exon	73928270	73928438	73928270	ID=Msa1123170-mRNA-1:exon:19554;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73928270	73928438	73928270	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73926959	73927056	73926959	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73926582	73926656	73926582	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73926436	73926504	73926436	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73926265	73926350	73926265	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73926077	73926194	73926077	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73925115	73925213	73925115	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73924675	73925032	73924675	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73922720	73924527	73922720	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73921958	73922059	73921958	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73919200	73919304	73919200	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73918957	73919031	73918957	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73918804	73918872	73918804	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73918617	73918685	73918617	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73917228	73917329	73917228	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	CDS	73914839	73915000	73914839	ID=Msa1123170-mRNA-1:cds;Parent=Msa1123170-mRNA-1
chr7_3	three_prime_UTR	73914520	73914838	73914520	ID=Msa1123170-mRNA-1:three_prime_utr;Parent=Msa1123170-mRNA-1

Gene Sequence

>Msa1123170

TTGTTTATTAAATCACGAGCAGCAGAAGGTGATGTCACGGAGAAACCTGTAGACCCTATCAAGATATACTCCGATAAGGAGTTAGTCAGGGAAATCGAGAAGATTGCATCTATCCTTGTGCCTGAAAAAGACTGGTCCGTTCGTATTGCTGCTATGCAGAGAATTGAAGGCGCTGCTGATTATCCATGTTTTCGTGGACTCCTGAAGCAACTTGGCGGACCTTTAAGCACACAATTGTCAGACAGAAGATCTAGCATCGTAAAGCAGGCTTGCCATTTATTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTTGAAGCATATGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGTATAGCTGATTGTGCTAAAAATGACCGGAATGCAGTGCTTCGTGCAAGGTGTTGTGAGTATGCTCTTTTGGTCCTAGAACATTGGCCAGATGCACCAGAAATACATCGTTCGGCTGAGTTATATGAGGATATGATAAAGTGTTGCGTTTCAGATGCAATGAGCGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTCGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGTTATCCAACGGTTAATAAATGAAGAGGATGGAGGAATACACAGGCGACATGCTTCACCTTCCATTCGTGATAGAGGTGCACTGACGTCGTTACCCAGTCAAGCCTCTGCTTCGTCTAATCCACCTGGTTATGGAACATCTGCAATTGTTGCAATGGATAGAAGTTCAAGTTTATCGTCGGGGACATCTGTCTCCTCTGGTGTACTTCTTTCACAGGCAAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCACTGCTATTGAAAGCATGCTTAGAGGCTTGAATATGTCTGATAAGCATAATGGATCATCTCTCCGGTCATCAAGTTTGGATCTAGAAGTTGACCCTCCATCGTCTCGTGATCCGCCTTTTCCAGCTGCTGCCTCTGCATCCCATCATTTGACAAGCTCTTCAACAACAGAGCCTACTGCTTATGGTGTCTATAAAGGTAGTAACCGAAATGGTGGTCTGGGCTTGTCCGACATAATCACTCAAATTCAAGCTACCAAAGATTCTGCCAAGTCATCATATCATAGTAATGTTGAAATTGAGCCTTTACCATCCTCATATTCAACTAGAAGGGCTTCTGAAAGATTACAAGAAAGGAGTTCTGCTGATGACAATAGTGACATCAGGGAGGCTAGGCGATTTATAAACCACAACACTGATAAGCAGTATCTGGATGCCCCTTATAGAGAAGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTTCAGAGGCCACTAGTGAGAAAGAATGCAACTGGACGTATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAACCAGCTATCTCTTGGAGAAATGTCAAGTTATTCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGGTCAGGTTCTGACTGGTCTTCCAGGGTTGCTGCCTTTAACTATCTTCACTCGTTGTTGCAGCAAGGTCCAAAGGGAACTCTAGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCTCACCATAAAGTTGCACAGGCTGCTCTTTCAACACTAGCAGATATAGTTCCAGCATGTCGAAAGCCTTTTGAGGGATACATGGAAAGAATATTACCACACGTCTTTTCCCGGTTAATTGATCCTAAAGAGGTTGTTAGGCAGCCATGTTCAACAACATTGGGAGTTGTTAGCAAAACGTACAGTGTCGATTCTCTCTTACCTGCACTGTTACGTTCACTAGATGAACAAAGGTCTCCAAAGGCTAAATTGGCCGTGATTGAATTTGCAATCAATTCCTTTAACAAACATGCAATGAATGCAGAAGGTGCTGCTAATATTGGCATATTAAAATTGTGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAGAATACGAAGCTTAAAGAAGCAGCTATTACATGCATTATTTCAGTGTATAATCACTTTGATTCGACCGCAGTTCTTAATTTCATTCTGAGTTTGTCAGTGGAAGAGCAAAATTCTCTGAGACGAGCCCTAAAACAGTACACCCCTCGCATTGAAGTAGACCTAGTAAACTATCTACAGAACAAGAAAGAGCGGCAACGTTCCAAGTCTTCCTATGATCCATCTGATGTTGTAGGAACGTCATCTGAAGATGGGTATGTTGGTTTCTCTAGGAAAGCTCATTACCTTGGAAGATATTCGGCTGGTTCCCTAGATAGTGATGGTGGCAGGAAGTGGAGCTCTCAGGATTCAACTCTTTTGAAATCGAGTCTTGGTCCAGCAGCTTCTGTTGAATGTGAGGATCATAATCATAGTCATAACCATAATCTTGAGACTGACTCTAATTGTGACAGTCCTGGTTCAAAACCCAAAGATCTTGCATATTCAGTCAATCCAATGGGTCAAAATTTTGGCTCTCAATCTAGCCAACTTGGACAAGTGGACAGTAGCATGAATTTCGAGGGTCTTTCAACTCCTCGTTTAGATGTTAACGGTCTGATCTCATTAGAGCGTTTAAATGTTGGTGAAGGCTATGCACTTGACAAAGAACTTCCTTCTGCATTGGAACTTAATCACCACTCAACTGAAGCTGTAAAGATCAATTCCATGGCAGACACTGGGCCCAGCATTCCTCAAATTCTTCATATGATATGCAATGCTGATGACGGTAGCCCTGTTTCAAGTAAACAGACTGCACTTCAACAGTTATTTGAAGCTTCTACAACAAATGACCAGTCTGTTTGGACCAAGTACTTCAATCAGATTTTGACGGTTGTGCTTGAGGTGCTGGATGATTCCGATTCCTCTGTCAGAGAGCTCACTCTTTCGTTGATAGTTGAAATGCTCAAAAACCAGAAAGATGCCCTGGAGAATTCAGTTGAGATTGTAATTGAGAAGCTGCTTCATGTTACAAAAGATATCGTTCCTAAGGTTTCAAATGAAGCAGAGCATTGCCTGACCATTGTTTTATCTCAGTCTGATCCATTCAGATGTTTGAGTGTTATTGTCCCTCTACTGGTTACCGATGATGAGAAAACACTTGTCACTTGCATTAATTGCTTAACAAAGCTTGTGGGCAGGCTCTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTACCTTCTCTTTTTGAAGCTTTTGGAAACCAGAGTGCAGATGTTCGCAAGACCGTTGTTTTCTGTCTCGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGCCTTAACAGCACACAGTTGAAGCTGGTCACAATTTATGCGAATCGAATCTCACAAGCCAGGACAGGCAAAGCAATTGATACCGTTCATGATTAG

Protein sequence

>Msa1123170

LFIKSRAAEGDVTEKPVDPIKIYSDKELVREIEKIASILVPEKDWSVRIAAMQRIEGAADYPCFRGLLKQLGGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEAYAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSAELYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALTSLPSQASASSNPPGYGTSAIVAMDRSSSLSSGTSVSSGVLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLNMSDKHNGSSLRSSSLDLEVDPPSSRDPPFPAAASASHHLTSSSTTEPTAYGVYKGSNRNGGLGLSDIITQIQATKDSAKSSYHSNVEIEPLPSSYSTRRASERLQERSSADDNSDIREARRFINHNTDKQYLDAPYREGNFRESHNSYVPNFQRPLVRKNATGRMSAGRRRSFDDNQLSLGEMSSYSDGPASLHEALSEGLRSGSDWSSRVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKEVVRQPCSTTLGVVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNAEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYNHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLVNYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGFSRKAHYLGRYSAGSLDSDGGRKWSSQDSTLLKSSLGPAASVECEDHNHSHNHNLETDSNCDSPGSKPKDLAYSVNPMGQNFGSQSSQLGQVDSSMNFEGLSTPRLDVNGLISLERLNVGEGYALDKELPSALELNHHSTEAVKINSMADTGPSIPQILHMICNADDGSPVSSKQTALQQLFEASTTNDQSVWTKYFNQILTVVLEVLDDSDSSVRELTLSLIVEMLKNQKDALENSVEIVIEKLLHVTKDIVPKVSNEAEHCLTIVLSQSDPFRCLSVIVPLLVTDDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPSLFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDTVHD*