AlfalfaGEDB | Msa0902040

M. sativa cultivar zhongmu-4 / Msa0902040

KEGG: K08876
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005813 GO:0005815 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902040	XP_013453074.1	95.436	745	19	3	1	738	1	737	0.0	1409

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902040	sp\|Q55GS2\|SCY1_DICDI	36.711	602	333	16	4	588	2	572	6.31e-121	384

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902040	A0A072UBV6	95.436	745	19	3	1	738	1	737	0.0	1409

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0606120	Msa0902040	0.838198	3.316759e-57	-8.615850e-47
Msa0902040	Msa0958490	0.886331	3.752048e-72	-8.615850e-47
Msa0902040	Msa0958520	0.848788	4.901541e-60	-8.615850e-47
Msa0902040	Msa1042400	0.834902	2.291623e-56	-8.615850e-47
Msa0902040	Msa1078230	0.809054	2.287382e-50	-8.615850e-47
Msa0902040	Msa1123170	0.833698	4.593921e-56	-8.615850e-47
Msa0902040	Msa1123290	0.818943	1.505481e-52	-8.615850e-47
Msa0902040	Msa1123310	0.816133	6.469956e-52	-8.615850e-47
Msa0902040	Msa1437840	0.821940	3.089772e-53	-8.615850e-47
Msa0902040	Msa1463590	0.831049	2.080551e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902040	MtrunA17_Chr6g0485441	95.436	745	19	3	1	738	1	737	0.0	1409
Msa0902040	MtrunA17_Chr1g0189431	84.106	151	19	1	1	146	1	151	8.51e-84	263
Msa0902040	MtrunA17_Chr1g0189451	78.667	150	26	2	588	737	1	144	7.65e-69	224
Msa0902040	MtrunA17_Chr4g0013741	22.671	569	366	15	53	576	96	635	1.17e-21	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902040	AT2G40730.1	75.067	746	166	6	1	737	1	735	0.0	1080
Msa0902040	AT1G71410.1	20.824	461	305	9	27	446	70	511	3.23e-17	87.0
Msa0902040	AT1G71410.2	20.824	461	305	9	27	446	70	511	3.23e-17	87.0
Msa0902040	AT1G22870.4	21.382	463	304	8	25	446	68	511	1.81e-16	84.3
Msa0902040	AT1G22870.1	20.915	459	307	7	27	446	70	511	3.18e-16	83.6
Msa0902040	AT1G22870.3	21.637	342	241	4	128	446	9	346	9.90e-15	78.6

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Find 248 sgRNAs with CRISPR-Local

Find 809 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGATGTTCGATCTA+AGG	0.342598	6_1:+99758973	Msa0902040:intron
AAAGAAGTTGTTGGTGGATC+TGG	0.357725	6_1:+99752004	Msa0902040:CDS
AAAGCATCTATCGAAGTTAC+AGG	0.393427	6_1:+99757572	Msa0902040:CDS
AAAGCTCTGCTCAGCTAAAC+CGG	0.431408	6_1:+99763002	Msa0902040:three_prime_UTR
AAATACAACTATATCTTGCT+AGG	0.503221	6_1:+99757902	Msa0902040:CDS
AAATATGGCAGAGACTACTG+GGG	0.748805	6_1:+99759727	Msa0902040:CDS
AAATTCCACCAAGGTTGAGC+AGG	0.454216	6_1:+99762808	Msa0902040:CDS
AAATTCCTGAAAGAAGTTGT+TGG	0.517801	6_1:+99751995	Msa0902040:CDS
AACAACGGTACTTGTGCTTA+TGG	0.307454	6_1:-99751918	None:intergenic
AACATTAGGAAGAATCCGAG+TGG	0.723039	6_1:-99758288	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCCTGAAAGAAGTTGT+TGG	+	chr6_1:99751995-99752014	Msa0902040:CDS	30.0%
ATAATTGATTGTTACCTTGG+AGG	-	chr6_1:99752110-99752129	None:intergenic	30.0%
ATTGAATGTAATCACATGTG+TGG	-	chr6_1:99752386-99752405	None:intergenic	30.0%
ATGTATATTACAGAGCATGA+CGG	+	chr6_1:99753106-99753125	Msa0902040:intron	30.0%
GAGTATTCTTGAGCTAAATA+TGG	+	chr6_1:99753268-99753287	Msa0902040:intron	30.0%
TTACAAACTTTGTCTATTGC+AGG	+	chr6_1:99753335-99753354	Msa0902040:intron	30.0%
ATGTTCTATCAGAGTTTGAT+GGG	+	chr6_1:99753427-99753446	Msa0902040:CDS	30.0%
AGACAAAATCAAACTTAAGC+CGG	-	chr6_1:99753656-99753675	None:intergenic	30.0%
CAATGAAGTGAAACAAAACA+CGG	-	chr6_1:99753687-99753706	None:intergenic	30.0%
CATCATAAACCTCCATTTAA+GGG	-	chr6_1:99753742-99753761	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	99751789	99763565	99751789	ID=Msa0902040;Name=Msa0902040
chr6_1	mRNA	99751789	99763565	99751789	ID=Msa0902040-mRNA-1;Parent=Msa0902040;Name=Msa0902040-mRNA-1;_AED=0.12;_eAED=0.13;_QI=200\|0.8\|0.80\|1\|1\|1\|21\|672\|742
chr6_1	exon	99751789	99752114	99751789	ID=Msa0902040-mRNA-1:exon:17584;Parent=Msa0902040-mRNA-1
chr6_1	exon	99752203	99752286	99752203	ID=Msa0902040-mRNA-1:exon:17585;Parent=Msa0902040-mRNA-1
chr6_1	exon	99752530	99752681	99752530	ID=Msa0902040-mRNA-1:exon:17586;Parent=Msa0902040-mRNA-1
chr6_1	exon	99753193	99753265	99753193	ID=Msa0902040-mRNA-1:exon:17587;Parent=Msa0902040-mRNA-1
chr6_1	exon	99753357	99753479	99753357	ID=Msa0902040-mRNA-1:exon:17588;Parent=Msa0902040-mRNA-1
chr6_1	exon	99753855	99753963	99753855	ID=Msa0902040-mRNA-1:exon:17589;Parent=Msa0902040-mRNA-1
chr6_1	exon	99754773	99754852	99754773	ID=Msa0902040-mRNA-1:exon:17590;Parent=Msa0902040-mRNA-1
chr6_1	exon	99754997	99755078	99754997	ID=Msa0902040-mRNA-1:exon:17591;Parent=Msa0902040-mRNA-1
chr6_1	exon	99755856	99755995	99755856	ID=Msa0902040-mRNA-1:exon:17592;Parent=Msa0902040-mRNA-1
chr6_1	exon	99756089	99756199	99756089	ID=Msa0902040-mRNA-1:exon:17593;Parent=Msa0902040-mRNA-1
chr6_1	exon	99756290	99756406	99756290	ID=Msa0902040-mRNA-1:exon:17594;Parent=Msa0902040-mRNA-1
chr6_1	exon	99756534	99756623	99756534	ID=Msa0902040-mRNA-1:exon:17595;Parent=Msa0902040-mRNA-1
chr6_1	exon	99757540	99757593	99757540	ID=Msa0902040-mRNA-1:exon:17596;Parent=Msa0902040-mRNA-1
chr6_1	exon	99757874	99757952	99757874	ID=Msa0902040-mRNA-1:exon:17597;Parent=Msa0902040-mRNA-1
chr6_1	exon	99758044	99758133	99758044	ID=Msa0902040-mRNA-1:exon:17598;Parent=Msa0902040-mRNA-1
chr6_1	exon	99758237	99758336	99758237	ID=Msa0902040-mRNA-1:exon:17599;Parent=Msa0902040-mRNA-1
chr6_1	exon	99758979	99759048	99758979	ID=Msa0902040-mRNA-1:exon:17600;Parent=Msa0902040-mRNA-1
chr6_1	exon	99759725	99759798	99759725	ID=Msa0902040-mRNA-1:exon:17601;Parent=Msa0902040-mRNA-1
chr6_1	exon	99761080	99761186	99761080	ID=Msa0902040-mRNA-1:exon:17602;Parent=Msa0902040-mRNA-1
chr6_1	exon	99762089	99762352	99762089	ID=Msa0902040-mRNA-1:exon:17603;Parent=Msa0902040-mRNA-1
chr6_1	exon	99762790	99763565	99762790	ID=Msa0902040-mRNA-1:exon:17604;Parent=Msa0902040-mRNA-1
chr6_1	five_prime_UTR	99751789	99751988	99751789	ID=Msa0902040-mRNA-1:five_prime_utr;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99751989	99752114	99751989	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99752203	99752286	99752203	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99752530	99752681	99752530	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99753193	99753265	99753193	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99753357	99753479	99753357	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99753855	99753963	99753855	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99754773	99754852	99754773	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99754997	99755078	99754997	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99755856	99755995	99755856	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99756089	99756199	99756089	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99756290	99756406	99756290	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99756534	99756623	99756534	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99757540	99757593	99757540	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99757874	99757952	99757874	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99758044	99758133	99758044	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99758237	99758336	99758237	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99758979	99759048	99758979	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99759725	99759798	99759725	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99761080	99761186	99761080	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99762089	99762352	99762089	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	CDS	99762790	99762893	99762790	ID=Msa0902040-mRNA-1:cds;Parent=Msa0902040-mRNA-1
chr6_1	three_prime_UTR	99762894	99763565	99762894	ID=Msa0902040-mRNA-1:three_prime_utr;Parent=Msa0902040-mRNA-1

Gene Sequence

>Msa0902040

ATGTTCAAATTCCTGAAAGAAGTTGTTGGTGGATCTGGAACTGGCCTCAGAGATCTCCCATACAACATCGGCGAACCTTACCCTTCCGCTTGGGGCTCTTGGCTTCATCATCGCGGTACCTCCAAGGTTTCAATTTTTTCATTATCTGGAACCAATGCCCAGGATGGACATTTAGCTGCGGGTCGTAATGGTGTCAAGCGTCTACGAACTGTTAGGCATCCAAATATTTTGTCATTTCTTCATAGTTCTGAGATTGAAACTTTTGATGGCGGTTCTTCTAAGGTTACAATTTATATTGTGACTGAACCTGTAATGCCACTTTCAGATAAGATTCAGGAGTTAGGTCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGACTGCTTCAAATAGCGAAAGCCGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGCAATGTTTGCTTGGCTAGTGTTGTTGTCACGCCAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGTAATGAGACATCCTCTACGCAAATGCTGCAATATGCATGGCTTGTTGCAACACAATACAAATCAACGGAGCTAGCAAAATCCGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGAATGGGTTGTCTAATCTATGAGCTGTTCTCTGGTTTGAAGTTGAGCAAAACAGAGGACTTACGTAACACTGCCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGGCTACTCAGTTCCACGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAGAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAGGACACTTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTAAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTTCTTCCAACAATAATTAAACTCTTTGCCTCCAATGATCGAGCTGTCCGTGTCAGCCTTCTCCAACATATTGAACAATTCGGAGAGTCATTATCAGCTCAAGCTGTTGATGAACAGGTTTACCCTCATGTTGCTACTGGTTTCTCTGATACATCTGCTTTTTTGAGGGAACTTACTCTCAAGTCCATGTTAGTTCTGGCTCCGAAGCTGTCTCAAAGGACCTTGTCTGGGTCATTATTAAAGCATCTATCGAAGTTACAGGTCGATGAGAGGCTGCGATGCGACGAACAAATACAACTATATCTTGCTAGGAAATATTGCAAGCTACTTAAACGAAGGGGACTACTTTTGCAGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACCTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCAACTATGACATCAATGAAATTGCCACTCGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGATGTTCGATCTAAGGCATTTCAAGCTATTGATCAATTTTTGCAAATGGCAAAGCAACACTACGAGAAGACAAATATGGCAGAGACTACTGGGGGTGCAAGCGATGGAAGTTTATCAATTCCAGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACTCTAAAGGGCAAGCCTTCTGATCATGCTCCAGTTGCTTCTGTGAGTTCTAGTGCCCTTACACCAACATCTTCTAATGCCAGCTCAGGCATTCTAGTTGCAGACACTCCTTCAACAGCACCTATCCGTGTAAATTCCACACCAGATTTCACTGACCACCATGCCCCTACATCTCCTACATCAACGGATGGCTGGGGGGAGCTAGAGAATGGAATTGATGAGGAACCTGAAAATGACAAGGATGGGTGGGATGATTTAGAACCACTTGAAGAAACAAAGCCAACTCCAGCTCTTACTAACATTCAAGCAGCTCAAAGGCGGCCAGTTGTTCAACCTGTTTCACAGACAAAAGCTTCAAGTTCGCGACCCAAAATTCCACCAAGGTTGAGCAGGGATGAAGATGAAGATTTGTGGGGTGCCATAGCAGCTCCCGCTCCAACAATCAAAGACCTTTAA

Protein sequence

>Msa0902040

MFKFLKEVVGGSGTGLRDLPYNIGEPYPSAWGSWLHHRGTSKVSIFSLSGTNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSSEIETFDGGSSKVTIYIVTEPVMPLSDKIQELGLEGTQRDEYYAWGLLQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEFDGSNETSSTQMLQYAWLVATQYKSTELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSGLKLSKTEDLRNTASIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFASNDRAVRVSLLQHIEQFGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTLSGSLLKHLSKLQVDERLRCDEQIQLYLARKYCKLLKRRGLLLQTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSNYDINEIATRILPNVVVLTIDPDSDVRSKAFQAIDQFLQMAKQHYEKTNMAETTGGASDGSLSIPGNASLLGWAMSSLTLKGKPSDHAPVASVSSSALTPTSSNASSGILVADTPSTAPIRVNSTPDFTDHHAPTSPTSTDGWGELENGIDEEPENDKDGWDDLEPLEETKPTPALTNIQAAQRRPVVQPVSQTKASSSRPKIPPRLSRDEDEDLWGAIAAPAPTIKDL*